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test-flatmap

This is a simple flatmap for testing purposes. Included are features used by the keast-5 ApiNATOMY neuron population, including spinal cord segments containing lamina VII gray matter. Because neuronConnectivity in the manifest specifies all of the keast-bladder model, parts of keast-4, keast-9, keast-10, and keast-20 also appear.

Map generation

$ python runmaker.py --output ../map-server/flatmaps  --source ../map-sources/test-flatmap/manifest.json --background-tiles --ignore-git
INFO: Generated map: id: test-flatmap, uuid: None, models: NCBITaxon:1, output: ../map-server/flatmaps/test-flatmap

Upload to SPARC Ubuntu system

IP address is 34.209.7.109

$ cd ../map-server/flatmaps
$ tar czf test-flatmap.tar.gz test-flatmap/
$ scp test-flatmap.tar.gz sparc:

Extract archive

$ ssh sparc
$ cd services/devel-flatmap-server/flatmaps/
$ tar xzf ~/test-flatmap.tar.gz
$ rm ~/test-flatmap.tar.gz
$ exit

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A repository to store test flatmaps

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