setup.py

from __future__ import print_function
import setuptools
from setuptools.command.install import install
from setuptools.command.develop import develop
import subprocess
import numpy
from setuptools.extension import Extension
from Cython.Build import cythonize

#pip install -e git+http://github.com/mazinlab/mkidpipeline.git@develop#egg=mkidpipeline


# example_extension = Extension(
#     name="mkidpipeline.some.module",
#     sources=['mkidpipeline/some/module.pyx'],
#     include_dirs=[numpy.get_include()],
#     extra_compile_args=["-std=c99", "-O3", '-pthread']
# )


def compile_and_install_software():
    """Used the subprocess module to compile/install the C software.
    e.g. subprocess.check_call('/usr/local/hdf5/bin/h5cc -shlib -pthread -O3 -o bin2hdf bin2hdf.c',
                              cwd=src_path, shell=True)
    """
    pass


class CustomInstall(install, object):
    """Custom handler for the 'install' command."""
    def run(self):
        compile_and_install_software()
        super(CustomInstall, self).run()


class CustomDevelop(develop, object):
    """Custom handler for the 'install' command."""
    def run(self):
        compile_and_install_software()
        super(CustomDevelop,self).run()


with open("README.md", "r") as fh:
    long_description = fh.read()

setuptools.setup(
    name="mkidpipeline",
    version="0.1",
    author="MazinLab",
    author_email="mazinlab@ucsb.edu",
    description="An UVOIR MKID Data Reduction Package",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/MazinLab/MKIDPipeline",
    packages=setuptools.find_packages(),
    ext_modules=cythonize([]),
    classifiers=(
        "Programming Language :: Python :: 3",
        "License :: OSI Approved :: MIT License",
        "Operating System :: POSIX",
        "Development Status :: 1 - Planning",
        "Intended Audience :: Science/Research"),
    zip_safe=False,
    cmdclass={'install': CustomInstall, 'develop': CustomDevelop},
    scripts=['scripts/mkidpipe']
)