TwoTimeScales/_pkgdown.yml at main · AngelaCar/TwoTimeScales · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
url: https://angelacar.github.io/TwoTimeScales/

home:
  title: Analysis of event data with two time scales

template:
  bootstrap: 5
  bootswatch: sandstone

navbar:
  title: "TwoTimeScales"
  left:
    - icon: fa-home
      href: index.html
      aria-label: Homepage
    - text: "Vignettes"
      href: articles/index.html
  right:
    - icon: fa-file-code-o
      text: "functions"
      href: reference/index.html
    - icon: fa-github fa-lg fab
      text: "github"
      href: https://github.com/AngelaCar/TwoTimeScales

articles:
  - title: "Introduction to TwoTimeScales"
    desc: >
      This vignette provides an introduction to the TwoTimeScales package.
    contents:
      - TwoTimeScales
  - title: "Smooth hazards with one time scale"
    desc: >
      This vignette describes in detail how to use the functions in the package
      to estimate smooth hazards over one time scale and how to visualize the
      results
    contents:
      - onetime
  - title: "Smooth hazards with two time scales"
    desc: >
      This vignette describes in detail how to use the functions in the package
      to estimate smooth hazards over two time scales
    contents:
      - twotimes
  - title: "Visualizing smooth hazards with two time scales"
    desc: >
      This vignette is dedicated to the plotting functions of the package
    contents:
      - visualization

reference:
- title: Data
- contents:
  - reccolon2ts
- title: Data processing
- contents:
  - prepare_data
  - prepare_data_LMMsolver
  - make_bins
  - exposures_events_1d
  - exposures_events_2d
  - exposures_events_Lexis
  - print.data2ts
- title: One time scale
- contents:
  - fit1ts
  - fit1tsmodel_ucminf
  - grid_search_1d
  - get_aic_fit_1d
  - get_bic_fit_1d
  - iwls_1d
  - GLAM_1d_covariates
  - get_hazard_1d
  - get_hazard_1d_LMM
  - get_hr
- title: Two time scales
- contents:
  - fit2ts
  - fit2tsmodel_ucminf
  - fitpgam
  - fitvcm
  - grid_search_2d
  - get_aic_fit_2d
  - get_bic_fit_2d
  - getAIC_BIC_LMM
  - GLAM_2d_no_covariates
  - GLAM_2d_covariates
  - get_hazard_2d
  - get_hazard_2d_LMM
  - get_hr
  - haz2ts_summary
  - haz2tsLMM_summary
  - haz2tsPGAM_summary
  - haz2tsVCM_summary
  - make_grid
  - predict_haz2ts_pointwise
  - predict_haz2ts
  - select_model2ts
- title: Plotting functions
- contents:
  - plot.haz1ts
  - plot.haz1tsLMM
  - plot.haz2ts
  - plot.haz2tsLMM
  - plot.haz2tsPGAM
  - plot.haz2tsVCM
  - plot_slices
  - imageplot_2ts
  - imageplot_SE
  - covariates_plot
- title: Competing risks functions
- contents:
  - cumhaz2ts
  - surv2ts
  - cuminc2ts
  - predict_cif2ts_pointwise
  - predict_comprisks2ts