I saw that currently we aren't using any presets for minimap2 mappings: https://github.com/bcgsc/goldrush-edit/blob/0cf23889ee9fe7854e55c3e8a03eb6cb8df7d98d/scripts/goldrush-edit-make#L56 It would be interesting to do some tests to see if setting `-x map-ont` has any impact on the final polishing