Minor updates so that compatible with python3

Author: stevenkboyd

n88/documentation/faim/9.0/doc/manual/Faim User Manual version 9.0.pdf

@@ -7932,7 +7932,7 @@ <h4 id="_preliminaries_first_lines_of_python">7.5.2. Preliminaries: first lines
 </div>
 <div class="listingblock">
 <div class="content">
-<pre>script_version = 3</pre>
+<pre>script_version = 4</pre>
 </div>
 </div>
 <div class="paragraph">
@@ -8010,7 +8010,7 @@ <h4 id="_reading_the_input_file">7.5.3. Reading the input file</h4>
 </div>
 <div class="listingblock">
 <div class="content">
-<pre>print "Reading", args.input_file
+<pre>print(f"Reading, {args.input_file}")
 reader = vtk.vtkXMLImageDataReader()
 reader.SetFileName(args.input_file)
 reader.Update()
@@ -8054,10 +8054,10 @@ <h4 id="_reading_the_input_file">7.5.3. Reading the input file</h4>
 <div class="listingblock">
 <div class="content">
 <pre>if not image:
-    print "No image data read."
+    print("No image data read.")
     sys.exit(1)
 
-print "Read image with dimensions", image.GetDimensions()</pre>
+print(f"Read image with point dimensions: {image.GetDimensions()}")</pre>
 </div>
 </div>
 <div class="paragraph">
@@ -8110,7 +8110,7 @@ <h4 id="_ensuring_connectivity">7.5.4. Ensuring connectivity</h4>
 </div>
 <div class="listingblock">
 <div class="content">
-<pre>print "Applying connectivity filter."
+<pre>print("Applying connectivity filter.")
 connectivity_filter = vtkbone.vtkboneImageConnectivityFilter()
 connectivity_filter.SetExtractionModeToLargestRegion()
 connectivity_filter.SetInputData(image)
@@ -8163,8 +8163,7 @@ <h4 id="_generating_a_mesh_2">7.5.5. Generating a mesh</h4>
 geometry_generator.Update()
 geometry = geometry_generator.GetOutput()
 
-print "Generated %d elements and %d nodes." % \
-      (geometry.GetNumberOfCells(), geometry.GetNumberOfPoints())</pre>
+print(f"Generated {geometry.GetNumberOfCells()} elements and {geometry.GetNumberOfPoints()} nodes.")</pre>
 </div>
 </div>
 <div class="paragraph">
@@ -8203,7 +8202,7 @@ <h4 id="_generating_a_mesh_2">7.5.5. Generating a mesh</h4>
 <div class="content">
 <pre>writer = vtk.vtkXMLUnstructuredGridWriter()
 geometry_file = "geometry.vtu"
-print "Writing geometry to", geometry_file
+print(f"Writing geometry to {geometry_file}")
 writer.SetFileName(geometry_file)
 writer.SetInputData(geometry)
 writer.Write()</pre>
@@ -8224,7 +8223,7 @@ <h4 id="_defining_materials_and_creating_a_material_table">7.5.6. Defining mater
 </div>
 <div class="listingblock">
 <div class="content">
-<pre>print "Creating a linear isotropic material."
+<pre>print("Creating a linear isotropic material.")
 material = vtkbone.vtkboneLinearIsotropicMaterial()
 material.SetName("linear_iso_material") <img src="./images/icons/callouts/1.png" alt="1">
 material.SetYoungsModulus(6829) <img src="./images/icons/callouts/2.png" alt="2">
@@ -8268,7 +8267,7 @@ <h4 id="_defining_materials_and_creating_a_material_table">7.5.6. Defining mater
 mt_generator.SetMaterialIdList(image.GetCellData().GetScalars()) <img src="./images/icons/callouts/1.png" alt="1">
 mt_generator.Update()
 material_table = mt_generator.GetOutput()
-print "Generated material table with %d entries." % material_table.GetNumberOfMaterials()</pre>
+print(f"Generated material table with {material_table.GetNumberOfMaterials()} entries.")</pre>
 </div>
 </div>
 <div class="colist arabic">
@@ -8294,7 +8293,7 @@ <h4 id="_applying_a_compression_test">7.5.7. Applying a compression test</h4>
 <div class="content">
 <pre># Apply a compression test (uniaxial)
 
-print "Applying a uniaxial compression test."
+print("Applying a uniaxial compression test.")
 generator = vtkbone.vtkboneApplyCompressionTest()
 generator.SetInputData(0, geometry) <img src="./images/icons/callouts/1.png" alt="1">
 generator.SetInputData(1, material_table) <img src="./images/icons/callouts/2.png" alt="2">
@@ -8333,7 +8332,7 @@ <h4 id="_writing_an_n88model_file">7.5.8. Writing an n88model file</h4>
 # Remove directory, so file ends up in current directory.
 output_file = os.path.split(output_file)[1]
 
-print "Writing n88model file:", output_file
+print(f"Writing n88model file: {output_file}")
 writer = vtkbone.vtkboneN88ModelWriter()
 writer.SetInputData(model)
 writer.SetFileName(output_file)
@@ -8390,7 +8389,7 @@ <h4 id="_modifying_the_file_history_and_log">7.5.9. Modifying the file history a
 </div>
 <div class="listingblock">
 <div class="content">
-<pre>model.AppendHistory("Created by apply_compression.py version %s ." % script_version)</pre>
+<pre>model.AppendHistory(f"Created by cube_compression.py version {script_version}.")</pre>
 </div>
 </div>
 <div class="paragraph">
@@ -8672,7 +8671,7 @@ <h4 id="_generating_the_image_data">7.6.3. Generating the image data</h4>
 <div class="content">
 <pre># Optional: write out image data to examine it
 
-print ("Writing geometry file: beam_image.vti")
+print("Writing geometry file: beam_image.vti")
 writer = vtk.vtkXMLImageDataWriter()
 writer.SetInputData(image)
 writer.SetFileName("beam_image.vti")
@@ -8762,7 +8761,7 @@ <h4 id="_generating_a_base_model_without_boundary_conditions">7.6.4. Generating
 <div class="content">
 <pre># Write an n88model file
 
-print "Writing n88model file:", args.output_file
+print(f"Writing n88model file: {args.output_file}")
 writer = vtkbone.vtkboneN88ModelWriter()
 writer.SetInputData(model)
 writer.SetFileName(args.output_file)
@@ -9149,13 +9148,14 @@ <h4 id="_documenting_the_model_in_the_file_log">7.6.9. Documenting the model in
 <div class="content">
 <pre># Update history and log
 
-model.AppendHistory("Created by create_cantilever.py version %s ." % script_version)
+model.AppendHistory(f"Created by create_cantilever.py version {script_version} .")
 
 model.AppendLog(
-"""create_cantilever.py
-Cantilever beam model with applied force on far face of %s .
-Using vtkbone version %s .
-""" % (args.applied_force, vtkbone.vtkboneVersion.GetVTKBONEVersion()))</pre>
+    f"""create_cantilever.py
+    Cantilever beam model with applied force on far face edge of {args.applied_force} .
+    Using vtkbone version {vtkbone.vtkboneVersion.GetvtkboneVersion()} .
+    """
+)</pre>
 </div>
 </div>
 <div class="paragraph">
@@ -9744,7 +9744,7 @@ <h4 id="_incremental_loading_and_hysteresis">7.7.7. Incremental loading and hyst
 
 # Read existing model (including possible solution)
 
-print "Reading n88model file:", args.input_file
+print(f"Reading n88model file: {args.input_file}")
 reader = vtkbone.vtkboneN88ModelReader()
 reader.SetFileName (args.input_file)
 reader.Update()
@@ -9781,17 +9781,18 @@ <h4 id="_incremental_loading_and_hysteresis">7.7.7. Incremental loading and hyst
 <div class="content">
 <pre># Update history and log
 
-model.AppendHistory("Modified modify_force.py version %s ." % script_version)
+model.AppendHistory(f"Modified modify_force.py version {script_version} .")
 
 model.AppendLog(
 """modify_force.py
-Changed applied force on far face edge to %s .
-Using VTKBONE version %s .
-""" % (args.applied_force, vtkbone.vtkboneVersion.GetVTKBONEVersion()))
+Changed applied force on far face edge to {args.applied_force} .
+Using vtkbone version {vtkbone.vtkboneVersion.GetvtkboneVersion()} .
+"""
+)
 
 # Write an n88model file
 
-print "Writing n88model file:", args.output_file
+print(f"Writing n88model file: {args.output_file}")
 writer = vtkbone.vtkboneN88ModelWriter()
 writer.SetInputData(model)
 writer.SetFileName(args.output_file)
@@ -10220,9 +10221,10 @@ <h4 id="_preliminaries_first_lines_of_python_2">7.8.2. Preliminaries: first line
     The first argument is printed with a time stamp.
     Subsequent arguments are printed one to a line without a timestamp.
     """
-    print "%8.2f %s" % (time.time()-start_time, msg)
+    print(f"{(time.time()-start_time):8.2f} {msg}")
     for line in additionalLines:
-        print " " * 9 + line
+        print(" "*9 + line)
+
 start_time = time.time()</pre>
 </div>
 </div>
@@ -10288,7 +10290,7 @@ <h4 id="_using_a_configuration_file_to_store_parameters">7.8.3. Using a configur
 <p>A bit of code to get the configuration file name from the command line.</p>
 </li>
 <li>
-<p>One line to execute the configuration file as Python code.</p>
+<p>A few lines to execute the configuration file as Python code.</p>
 </li>
 <li>
 <p>Some lines to print out all the values that we expected to read in. This is very good practice so when you run it, you can verify that everything is as you expect.</p>
@@ -10301,14 +10303,16 @@ <h4 id="_using_a_configuration_file_to_store_parameters">7.8.3. Using a configur
 <div class="listingblock">
 <div class="content">
 <pre>if len(sys.argv) != 2:
-  print "Usage: python screwpullout.py example.conf"
+  print("Usage: python screwpullout.py example.conf")
   sys.exit(1)
 config_file = sys.argv[1]
 
 # Read in configuration file.
 message("Reading configuration file " + config_file)
 # Here we are actually executing it as python code.
-execfile(config_file)
+with open(config_file) as f:
+    code = compile(f.read(), config_file, 'exec')
+    exec(code)
 
 # Print out values that we read in.  This also has the effect of causing
 # this script to die if configuration values are missing (which is a good thing).
@@ -17598,7 +17602,7 @@ <h2 id="_colophon">Colophon</h2>
 </div>
 <div id="footer">
 <div id="footer-text">
-Last updated 2020-04-30 21:19:16 -0600
+Last updated 2021-06-18 12:47:47 -0600
 </div>
 </div>
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