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GSA O3MAT EMBER Study Scripts

This repository contains documentation and scripts used for the GSA O3MAT EMBER study. The codebase is organized into two main components: Fire Emissions processing and NACC model workflows.

Directory Structure

1. FireEmissions

Contains tools, scripts, and documentation for processing fire emissions data, including BlueSky Pipeline (BSP) configurations, HMS data processing, and SMOKE model run scripts.

  • bsp/: BlueSky Pipeline scripts and configurations.
    • Contains JSON/YAML config files (bsp_config_*.json, configue_bluesky.yml).
    • Scripts for running BSP (run_bsp.csh) and post-processing.
    • Utilities for adding HAPs and generating FF10 files.
  • finn/: Scripts for processing Fire INventory from NCAR (FINN) data (combine_finn.py).
  • fire_activities/: Tools for handling fire activity data.
    • HMS (Hazard Mapping System) processing scripts (get_HMS.py, HMS_Processing.ipynb).
    • Perimeter handling (get_nbac_perimeters.csh, setup_perimeters.v2.csh).
  • sf2py/: Source code and data sources for preparing inputs, likely bridging SmartFire or similar tools to Python workflows.
  • smoke/: SMOKE model run scripts for various fire sectors.
    • Scripts for Wildfires (ptfire-wild) and Prescribed burns (ptfire-rx).
    • Regional scripts for Canada and Mexico.
    • Configuration files for exclusions and directory definitions.
  • Documentation: EMBER Fire Technical Documentation.docx provides detailed technical information.

2. NACC

Contains scripts and instructions for running the NACC (NOAA's Assimilation and Climate Change) model components, specifically related to FV3 and cloud workflows.

  • Documentation: HOW_TO_run_NACC_cloud.README provides instructions for running NACC in the cloud.
  • Data Management:
    • aws_pull_data.csh: Script to retrieve data from AWS.
    • batch_merge_nacc.csh & merge.sh: Scripts for merging model outputs.
  • Execution:
    • compile.NACC.csh: Script to compile the NACC model.
    • parallel.EMBER-run-nacc-fv3.csh: Script for parallel execution of NACC-FV3.
  • Quality Assurance: QA_Check.ipynb for validating outputs
  • Bugfix: Directory NACC/bugfix contains descriptions of issues (NACC/bugfix/README.md) and modified fortran codes

Usage

Please refer to O3MAT_Task2_FinalReport for detailed description and usage.