GLIB 2.29 required during short_read_analysis

[Mikes92]

Hello! I'm trying to run OPERA-MS from the docker-hub file with apptainer. I've installed the perl modules and crated the symlink for perl as noted in other issues, and I'm now getting an error that i've tracked down to intermediate_files/coverage_estimates/short_read_analysis.err that states/lib/x86_64-linux-gnu/libm.so.6: version GLIBC_2.29' not found`

when I run ldd --version in the container i get back GLIBC=2.27

i'm not really sure what to do here, i'd prefer to run as a container rather than build OPERA-MS directly, and I built direct from dockerhub because apptainer cannot build directly from the included dockerfile in the gitrepo but i suspect it would have the same problem?

any thoughts would be helpful, thank you!

Mike

[jsgounot]

Hi Mike, thanks for reporting this. I'll need time to discuss this with some team members with Docker experience first.

[Mikes92]

Hey of course. I tried to forced Ubuntu 20.04 and rebuild the container but I ran into many issues and decided to downloaded and use OPERA-MS directly from git and I think it worked. though I ran into a minor issue that I will add to an ongoing thread. thanks!