Skip to content

Commit 2e4dd3b

Browse files
committed
updated website and minor changes
1 parent 92d96c5 commit 2e4dd3b

76 files changed

Lines changed: 454 additions & 168 deletions

File tree

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

.gitignore

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -7,4 +7,4 @@
77
.ipynb_checkpoints
88
inst/doc
99
.*
10-
!/.gitignore
10+
!/.gitignore

DESCRIPTION

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -2,9 +2,9 @@ Package: SelectSim
22
Title: Selected Events Linked by Evolutionary Conditions across human Tumors
33
Version: 0.0.1.3
44
Authors@R:
5-
person("Arvind", "Iyer", , "ayalurarvind@gamil.com", role = c("aut", "cre"),comment = c(ORCID = "0000-0002-8247-700X"))
6-
person("Marco", "Mina", , "marco.mina.85@gmail.com", role = c("aut", "cre"))
7-
person("Giovanni", "Ciriello", , "givoanni.cirello@unil.ch", role = c("aut","cre"),comment = c(ORCID ="0000-0003-2021-8683"))
5+
c(person("Arvind", "Iyer", , "ayalurarvind@gamil.com", role = c("aut", "cre"),comment = c(ORCID = "0000-0002-8247-700X")),
6+
person("Marco", "Mina", , "marco.mina.85@gmail.com", role = c("aut")),
7+
person("Giovanni", "Ciriello", , "givoanni.cirello@unil.ch", role = c("aut"),comment = c(ORCID ="0000-0003-2021-8683")))
88
Description: This R package implements the SelectSim methodology to infer evolutionary dependencies between functional alterations in cancer.
99
License: MIT + file LICENSE
1010
Encoding: UTF-8

_pkgdown.yml

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
url: https://csogroup.github.io/SelectSim/
22
template:
33
bootstrap: 5
4-
bootswatch: materia
4+
bootswatch: journal
55

docs/404.html

Lines changed: 2 additions & 2 deletions
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

docs/INSTALLATION.html

Lines changed: 2 additions & 2 deletions
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

docs/LICENSE-text.html

Lines changed: 2 additions & 2 deletions
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

docs/LICENSE.html

Lines changed: 2 additions & 2 deletions
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

docs/articles/data_processing.html

Lines changed: 4 additions & 4 deletions
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

docs/articles/doc.css

Lines changed: 145 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,145 @@
1+
body {
2+
font-family: 'Helvetica Neue', sans;
3+
background: #ffffff;
4+
color: #222;
5+
margin: 2em auto;
6+
padding: 0 2em;
7+
/*width: 48em;*/
8+
line-height: 1.5em;
9+
font-size: 16px;
10+
font-weight: 300;
11+
}
12+
13+
img {
14+
margin: 0;
15+
border: 0;
16+
}
17+
18+
p {
19+
margin: 1em 0;
20+
}
21+
22+
a {
23+
color: #00213D;
24+
}
25+
26+
a:visited {
27+
color: #00213D;
28+
background-color: transparent;
29+
}
30+
31+
a:active {
32+
color: #318100;
33+
background-color: transparent;
34+
}
35+
36+
a:hover {
37+
text-decoration: none;
38+
}
39+
40+
p img {
41+
border: 0;
42+
margin: 0;
43+
}
44+
45+
h1, h2, h3, h4, h5, h6 {
46+
color: #003a6b;
47+
background-color: transparent;
48+
margin: 1em 0;
49+
font-weight: normal;
50+
}
51+
52+
h1 {
53+
font-size: 180%;
54+
}
55+
56+
h2 {
57+
font-size: 160%;
58+
}
59+
60+
h3 {
61+
font-size: 140%;
62+
}
63+
64+
h4 {
65+
font-size: 110%;
66+
}
67+
68+
h5 {
69+
font-size: 105%;
70+
}
71+
72+
h6 {
73+
font-size: 100%;
74+
}
75+
76+
dt {
77+
font-style: italic;
78+
}
79+
80+
dd {
81+
margin-bottom: 1.5em;
82+
}
83+
84+
li {
85+
line-height: 1.5em;
86+
}
87+
88+
code {
89+
padding: 0.1em;
90+
font-size: 14px;
91+
font-family: "Menlo", monospace;
92+
background-color: #f5f5f5;
93+
border: 1px solid #efefef;
94+
}
95+
96+
pre {
97+
font-family: "Menlo", monospace;
98+
background-color: #fff;
99+
padding: 0.5em;
100+
line-height: 1.25em;
101+
border: 1px solid #efefef;
102+
border-bottom: 1px solid #ddd;
103+
-webkit-box-shadow: 0 1px 3px 0 #eee;
104+
-moz-box-shadow: 0 1px 3px 0 #eee;
105+
-ms-box-shadow: 0 1px 3px 0 #eee;
106+
box-shadow: 0 1px 3px 0 #eee;
107+
}
108+
109+
pre code {
110+
background-color: transparent;
111+
border-width: 0;
112+
}
113+
114+
blockquote {
115+
border-top: 1px solid #efefef;
116+
border-bottom: 1px solid #ddd;
117+
-webkit-box-shadow: 0 1px 3px 0 #eee;
118+
-moz-box-shadow: 0 1px 3px 0 #eee;
119+
-ms-box-shadow: 0 1px 3px 0 #eee;
120+
box-shadow: 0 1px 3px 0 #eee;
121+
}
122+
123+
table {
124+
border-collapse: collapse;
125+
border: 1px solid #efefef;
126+
border-bottom: 1px solid #ddd;
127+
-webkit-box-shadow: 0 1px 3px 0 #eee;
128+
-moz-box-shadow: 0 1px 3px 0 #eee;
129+
-ms-box-shadow: 0 1px 3px 0 #eee;
130+
box-shadow: 0 1px 3px 0 #eee;
131+
}
132+
133+
td, th {
134+
border: 1px solid #ddd;
135+
padding: 0.5em;
136+
}
137+
138+
th {
139+
background-color: #f5f5f5;
140+
}
141+
142+
143+
div.main-container {
144+
max-width: 1800px !important;
145+
}

docs/articles/index.html

Lines changed: 2 additions & 2 deletions
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

0 commit comments

Comments
 (0)