From fcd6f07c6470c8997839ba65d95e4156475c05ad Mon Sep 17 00:00:00 2001
From: Jose Nimo <nimojose@gmail.com>
Date: Mon, 20 Oct 2025 14:45:16 +0200
Subject: [PATCH 1/2] CHANGED: CI triggers, release and docs

---
 .github/workflows/docs.yml    |  6 ++++--
 .github/workflows/publish.yml |  7 +++----
 .github/workflows/test.yml    | 16 ++++++++--------
 3 files changed, 15 insertions(+), 14 deletions(-)

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index eee667a..23026bc 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -2,8 +2,10 @@ name: docs
 
 on:
   push:
-    tags:
-      - "v*"
+    branches:
+      - main
+    paths:
+      - 'docs/**'
 
 jobs:
   build-docs:
diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index c967213..cf9a9b9 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -1,9 +1,8 @@
 name: Publish to pypi
 
 on:
-  push:
-    tags:
-      - "v*" 
+  release:
+    types: [published]
 
 jobs:
   publish:
@@ -17,7 +16,7 @@ jobs:
         with:
           python-version-file: "pyproject.toml"
 
-      - name: Install the latest version of uv
+      - name: Install uv
         uses: astral-sh/setup-uv@v6
         with:
           enable-cache: true
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index b53bad0..e7c677c 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -13,7 +13,7 @@ jobs:
         strategy:
             fail-fast: false
             matrix:
-              os: [windows-latest, macos-latest, ubuntu-latest  ]
+              os: [windows-latest, macos-latest, ubuntu-latest]
               python: ["3.11", "3.12", "3.13"]
 
         env:
@@ -39,13 +39,13 @@ jobs:
                   DISPLAY: :42
               run: uv run pytest --cov --color=yes --cov-report=xml
 
-            # - name: Upload coverage to Codecov
-            #   uses: codecov/codecov-action@v5
-            #   with:
-            #       name: coverage
-            #       verbose: true
-            #   env:
-            #       CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+            - name: Upload coverage to Codecov
+              uses: codecov/codecov-action@v5
+              with:
+                  name: coverage
+                  verbose: true
+              env:
+                  CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
             - name: Build Wheel
               run: "uv build"

From f84d5ca533e29fcbaca08cb80a93041780a0e0e3 Mon Sep 17 00:00:00 2001
From: Jose Nimo <nimojose@gmail.com>
Date: Mon, 20 Oct 2025 14:46:46 +0200
Subject: [PATCH 2/2] chore: version bump

---
 pyproject.toml | 2 +-
 uv.lock        | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 0282a74..afaa659 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "openDVP"
-version = "0.7.3"
+version = "0.7.4"
 description = "open-sourced Deep Visual Proteomics toolkit"
 readme = "README.md"
 requires-python = ">=3.11, <3.14"
diff --git a/uv.lock b/uv.lock
index b29c8ba..bc5f88b 100644
--- a/uv.lock
+++ b/uv.lock
@@ -2433,7 +2433,7 @@ wheels = [
 
 [[package]]
 name = "opendvp"
-version = "0.7.3"
+version = "0.7.4"
 source = { editable = "." }
 dependencies = [
     { name = "adjusttext" },