samOptiPro/NAMESPACE.bak at main · DIASPARAproject/samOptiPro · GitHub

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# Generated by roxygen2: do not edit by hand

export(.compile_mcmc_with_build)
export(.default_sanitize_roots)
export(.sop_max)
export(as_mcmc_list)
export(assess_performance)
export(build_conf_with_monitors)
export(checkInits)
export(checkInitsAndRun)
export(compute_WAIC)
export(compute_diag_from_mcmc)
export(compute_diag_from_mcmc_vect)
export(configure_hmc_safely)
export(configure_hmc_safely_bis)
export(diagnose_model_structure)
export(diagnostics_by_target)
export(ensure_monitors_exist)
export(identify_bottlenecks)
export(identify_bottlenecks_family)
export(merge_mcmc_samples)
export(normalize_constants_generic)
export(plot_bottlenecks)
export(plot_bottlenecks_fast)
export(plot_bottlenecks_index)
export(plot_convergence_checks)
export(plot_convergence_rhat_sampled_fast)
export(plot_family_ess_bar)
export(plot_family_rhat_bar)
export(plot_mcmc_histograms)
export(profile_sampler_times)
export(proxy_step_sd)
export(run_baseline_coda)
export(run_baseline_config)
export(run_hmc_all_nodes)
export(run_structure_and_hmc_test)
export(sampler_df)
export(sampler_df_from_conf)
export(sampler_env_dump)
export(sampler_env_numeric_fields)
export(sampler_functions_from_conf)
export(sampler_scale)
export(sampler_scales_after_run)
export(sampler_scales_from_run)
export(sampler_targets)
export(test_strategy)
export(test_strategy_family)
export(test_strategy_family_fast)
importFrom(coda,as.mcmc)
importFrom(coda,mcmc)
importFrom(coda,mcmc.list)
importFrom(data.table,as.data.table)
importFrom(data.table,fwrite)
importFrom(data.table,rbindlist)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(nimble,buildMCMC)
importFrom(nimble,compileNimble)
importFrom(nimble,nimbleOptions)
importFrom(stats,cov)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(utils,head)