Conditional amino acid analysis

[xiw588]

Hi, I am curious if it is possible to run conditional amino acid analysis at certain position, if it is, what is actually being conditional on? Same concept for the conditional allele analysis, in this case should be the top significant residue. Or it is conditional on haplotypes (in other words alleles?)

Not sure if I explained my question clearly.

Thanks a lot!

[xiw588]

Hi, following up on this! Thanks a lot!

[xiw588]

To clarify my question, I am wondering if it is possible to run haplotypes conditional analysis within one gene. For example as the figure shows here, for position 11 and 71. Thanks a lot