test: eliminate remaining test warnings for warning-free test suite

This completes the test warning cleanup effort started in #1344 and #1342,
achieving a fully warning-free test suite when running 'make test'.

Changes include:
- Added explicit type hints for session registry attributes
- Fixed AsyncMock usage in session_registry tests with proper SSETransport fixtures
- Added done_callback to fire-and-forget asyncio futures to prevent warnings
- Implemented proper logging handler cleanup in LoggingService.shutdown()
- Replaced deprecated Pydantic v1 .dict() with v2 .model_dump()
- Fixed line continuation formatting in content_moderation plugin
- Added pytest-integration-mark dependency to pyproject.toml

All tests now pass without warnings, improving test output clarity and
ensuring proper resource cleanup during test execution.

Signed-off-by: Jonathan Springer <jonpspri@gmail.com>

Author: jonpspri

mcpgateway/cache/session_registry.py

@@ -50,6 +50,7 @@
 
 # Standard
 import asyncio
+from asyncio import Task
 from datetime import datetime, timezone
 import json
 import logging
@@ -184,7 +185,7 @@ def __init__(
         # Set up backend-specific components
         if self._backend == "memory":
             # Nothing special needed for memory backend
-            self._session_message = None
+            self._session_message: dict[str, Any] | None = None
 
         elif self._backend == "none":
             # No session tracking - this is just a dummy registry
@@ -296,7 +297,7 @@ def __init__(
         self._sessions: Dict[str, Any] = {}  # Local transport cache
         self._client_capabilities: Dict[str, Dict[str, Any]] = {}  # Client capabilities by session_id
         self._lock = asyncio.Lock()
-        self._cleanup_task = None
+        self._cleanup_task: Task | None = None
 
     async def initialize(self) -> None:
         """Initialize the registry with async setup.
@@ -702,7 +703,7 @@ async def broadcast(self, session_id: str, message: Dict[str, Any]) -> None:
             else:
                 msg_json = json.dumps(str(message))
 
-            self._session_message: Dict[str, Any] = {"session_id": session_id, "message": msg_json}
+            self._session_message: Dict[str, Any] | None = {"session_id": session_id, "message": msg_json}
 
         elif self._backend == "redis":
             try:
@@ -840,7 +841,7 @@ async def respond(
         elif self._backend == "memory":
             # if self._session_message:
             transport = self.get_session_sync(session_id)
-            if transport:
+            if transport and self._session_message:
                 message = json.loads(str(self._session_message.get("message")))
                 await self.generate_response(message=message, transport=transport, server_id=server_id, user=user, base_url=base_url)
 
@@ -868,7 +869,7 @@ async def respond(
 
         elif self._backend == "database":
 
-            def _db_read_session(session_id: str) -> SessionRecord:
+            def _db_read_session(session_id: str) -> SessionRecord | None:
                 """Check if session still exists in the database.
 
                 Queries the SessionRecord table to verify that the session
@@ -903,7 +904,7 @@ def _db_read_session(session_id: str) -> SessionRecord:
                 finally:
                     db_session.close()
 
-            def _db_read(session_id: str) -> SessionMessageRecord:
+            def _db_read(session_id: str) -> SessionMessageRecord | None:
                 """Read pending message for a session from the database.
 
                 Retrieves the first (oldest) unprocessed message for the given
@@ -1348,23 +1349,23 @@ async def generate_response(self, message: Dict[str, Any], transport: SSETranspo
         result = {}
 
         if "method" in message and "id" in message:
+            method = message["method"]
+            params = message.get("params", {})
+            params["server_id"] = server_id
+            req_id = message["id"]
+
+            rpc_input = {
+                "jsonrpc": "2.0",
+                "method": method,
+                "params": params,
+                "id": req_id,
+            }
+            # Get the token from the current authentication context
+            # The user object doesn't contain the token directly, we need to reconstruct it
+            # Since we don't have access to the original headers here, we need a different approach
+            # We'll extract the token from the session or create a new admin token
+            token = None
             try:
-                method = message["method"]
-                params = message.get("params", {})
-                params["server_id"] = server_id
-                req_id = message["id"]
-
-                rpc_input = {
-                    "jsonrpc": "2.0",
-                    "method": method,
-                    "params": params,
-                    "id": req_id,
-                }
-                # Get the token from the current authentication context
-                # The user object doesn't contain the token directly, we need to reconstruct it
-                # Since we don't have access to the original headers here, we need a different approach
-                # We'll extract the token from the session or create a new admin token
-                token = None
                 if hasattr(user, "get") and "auth_token" in user:
                     token = user["auth_token"]
                 else:

mcpgateway/services/logging_service.py

@@ -154,8 +154,8 @@ def emit(self, record: logging.LogRecord) -> None:
                     # No running loop, can't store
                     return
 
-            # Schedule the coroutine
-            asyncio.run_coroutine_threadsafe(
+            # Schedule the coroutine and store the future (fire-and-forget)
+            future = asyncio.run_coroutine_threadsafe(
                 self.storage.add_log(
                     level=log_level,
                     message=message,
@@ -167,6 +167,8 @@ def emit(self, record: logging.LogRecord) -> None:
                 ),
                 self.loop,
             )
+            # Add a done callback to catch any exceptions without blocking
+            future.add_done_callback(lambda f: f.exception() if not f.cancelled() else None)
         except Exception:
             # Silently fail to avoid logging recursion
             pass  # nosec B110 - Intentional to prevent logging recursion
@@ -204,6 +206,7 @@ def __init__(self) -> None:
         self._subscribers: List[asyncio.Queue[_LogMessage]] = []
         self._loggers: Dict[str, logging.Logger] = {}
         self._storage: LogStorageService | None = None  # Will be initialized if admin UI is enabled
+        self._storage_handler: Optional[StorageHandler] = None  # Track the storage handler for cleanup
 
     async def initialize(self) -> None:
         """Initialize logging service.
@@ -249,10 +252,10 @@ async def initialize(self) -> None:
             self._storage = LogStorageService()
 
             # Add storage handler to capture all logs
-            storage_handler = StorageHandler(self._storage)
-            storage_handler.setFormatter(text_formatter)
-            storage_handler.setLevel(getattr(logging, settings.log_level.upper()))
-            root_logger.addHandler(storage_handler)
+            self._storage_handler = StorageHandler(self._storage)
+            self._storage_handler.setFormatter(text_formatter)
+            self._storage_handler.setLevel(getattr(logging, settings.log_level.upper()))
+            root_logger.addHandler(self._storage_handler)
 
             logging.info(f"Log storage initialized with {settings.log_buffer_size_mb}MB buffer")
 
@@ -271,6 +274,12 @@ async def shutdown(self) -> None:
             >>> asyncio.run(service.shutdown())
 
         """
+        # Remove storage handler from root logger if it was added
+        if self._storage_handler:
+            root_logger = logging.getLogger()
+            root_logger.removeHandler(self._storage_handler)
+            self._storage_handler = None
+
         # Clear subscribers
         self._subscribers.clear()
         logging.info("Logging service shutdown")

mcpgateway/transports/streamablehttp_transport.py

@@ -505,7 +505,7 @@ async def get_prompt(prompt_id: str, arguments: dict[str, str] | None = None) ->
             if not result or not result.messages:
                 logger.warning(f"No content returned by prompt: {prompt_id}")
                 return []
-            message_dicts = [message.dict() for message in result.messages]
+            message_dicts = [message.model_dump() for message in result.messages]
             return types.GetPromptResult(messages=message_dicts, description=result.description)
     except Exception as e:
         logger.exception(f"Error getting prompt '{prompt_id}': {e}")

plugins/content_moderation/content_moderation.py

@@ -523,7 +523,12 @@ async def _moderate_with_patterns(self, text: str) -> ModerationResult:
                     break
 
         return ModerationResult(
-            flagged=flagged, categories=categories, action=action, provider=ModerationProvider.IBM_WATSON, confidence=max_score, details={"method": "pattern_matching"}  # Default fallback
+            flagged=flagged,
+            categories=categories,
+            action=action,
+            provider=ModerationProvider.IBM_WATSON,
+            confidence=max_score,
+            details={"method": "pattern_matching"},  # Default fallback
         )
 
     async def _extract_text_content(self, payload: Any) -> List[str]:
@@ -555,7 +560,7 @@ async def prompt_pre_fetch(self, payload: PromptPrehookPayload, _context: Plugin
 
                 if self._cfg.audit_decisions:
                     logger.info(
-                        f"Content moderation - Prompt: {payload.prompt_id}, Result: {result.flagged}, " f"Action: {result.action}, Provider: {result.provider}, " f"Confidence: {result.confidence:.2f}"
+                        f"Content moderation - Prompt: {payload.prompt_id}, Result: {result.flagged}, Action: {result.action}, Provider: {result.provider}, Confidence: {result.confidence:.2f}"
                     )
 
                 if result.action == ModerationAction.BLOCK:
@@ -572,7 +577,7 @@ async def prompt_pre_fetch(self, payload: PromptPrehookPayload, _context: Plugin
                                 "flagged_text_preview": text[:100] + "..." if len(text) > 100 else text,
                             },
                         ),
-                        metadata={"moderation_result": result.dict(), "provider": result.provider.value},
+                        metadata={"moderation_result": result.model_dump(), "provider": result.provider.value},
                     )
                 elif result.modified_content:
                     # Modify the payload with redacted/transformed content
@@ -598,7 +603,7 @@ async def tool_pre_invoke(self, payload: ToolPreInvokePayload, _context: PluginC
                 result = await self._moderate_content(text)
 
                 if self._cfg.audit_decisions:
-                    logger.info(f"Content moderation - Tool: {payload.name}, Result: {result.flagged}, " f"Action: {result.action}, Provider: {result.provider}")
+                    logger.info(f"Content moderation - Tool: {payload.name}, Result: {result.flagged}, Action: {result.action}, Provider: {result.provider}")
 
                 if result.action == ModerationAction.BLOCK:
                     return ToolPreInvokeResult(

pyproject.toml

@@ -129,6 +129,7 @@ dev = [
     "pytest-env>=1.1.5",
     "pytest-examples>=0.0.18",
     "pytest-httpx>=0.35.0",
+    "pytest-integration-mark>=0.2.0",
     "pytest-md-report>=0.7.0",
     "pytest-rerunfailures>=16.0.1",
     "pytest-timeout>=2.4.0",