BOSS-RUNS/pyproject.toml at main · IsabelMarleen/BOSS-RUNS · GitHub

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[tool.hatch.version]
path = "boss/__init__.py"


[build-system]
requires = ["hatchling>1.26.1"]
build-backend = "hatchling.build"


[project]
name = "boss_runs"
description = "Dynamic, adaptive sampling during nanopore sequencing"
dynamic = ["version"]
readme = "README.md"
requires-python = ">=3.10,<3.13"
dependencies = [
    "readfish[all]==2024.3.0",
    "Bottleneck~=1.3.7",
    "scipy~=1.12.0",
    "numba~=0.59.0",
    "mappy~=2.28",
    "psutil~=7.0.0",
]


[project.urls]
homepage = "https://github.com/goldman-gp-ebi/BOSS-RUNS/"


[tool.hatch.envs.dev]
dev-mode = true
dependencies = [
  "pytest",
  "pytest-cov",
  "pytest-timeout",
]


[project.scripts]
boss = "boss.BOSS:main"


[tool.hatch.build.targets.sdist]
only_include = [
  "boss/**",
  "README.md",
  "LICENSE",
]


[tool.hatch.build.targets.wheel]
packages = ["boss"]


[tool.pytest.ini_options]
log_cli = true
log_cli_level = "INFO"
log_cli_format = "%(asctime)s [%(levelname)8s] %(message)s (%(filename)s:%(lineno)s)"
log_cli_date_format = "%Y-%m-%d %H:%M:%S"