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Merge pull request vortexgpgpu#248 from rahul7rajdn/apptainer
Apptainer for Vortex
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‎.gitignore‎

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/.vscode
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*.cache
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*.code-workspace
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miscs/apptainer/vortex.sif

‎docs/fpga_setup.md‎

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$ source /tools/reconfig/xilinx/Vitis/2023.1/settings64.sh
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```
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If you are using an apptainer,
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```
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$ export LD_LIBRARY_PATH=/opt/boost-1.66/lib/:/opt/openssl-1.1/lib/:$LD_LIBRARY_PATH
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```
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### Check Installed FPGA Platforms
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`platforminfo -l` which tells us the correct name of the platform installed on the current fpga node. It should be used for the `PLATFORM` variable below. Otherwise, if there is an error then there was an issue with the previous two commands.
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‎miscs/apptainer/README.md‎

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# Apptainer Build Process
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Use the Slurm scheduler to request an interactive job on Flubber9
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```
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salloc -p rg-fpga --nodes=1 --ntasks-per-node=64 --mem=16G --nodelist flubber9 --time=01:00:00
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```
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Go to `apptainer` directory
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```
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$ pwd
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vortex/miscs/apptainer
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$ apptainer build --no-https vortex.sif vortex.def
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```
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To start the apptainer,
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```
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$ chmod +x run_apptainer.sh
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$ ./run_apptainer.sh
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```
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| Note: Set env variables in `run_apptainer.sh` accordingly.
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Inside the Apptainer,
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```
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# should show devices connected to machine on which you are running this command
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Apptainer> lsusb
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```
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# Vortex Simulation inside Apptainer
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Go to bind of vortex repo,
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```
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Apptainer> cd /home/vortex
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Apptainer> mkdir build
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Apptainer> cd build
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Apptainer> ../configure --xlen=32 --tooldir=$HOME/tools
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Skip the below 3 steps, If tools are already present in the $HOME/tools
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Apptainer> sed -i 's/\btar /tar --no-same-owner /g' ci/toolchain_install.sh
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Apptainer> ./ci/toolchain_install.sh --all
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Apptainer> sed -i 's/\btar --no-same-owner /tar /g' ci/toolchain_install.sh
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Apptainer> source ./ci/toolchain_env.sh
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Apptainer> verilator --version
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```
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### Running SIMX, RTLSIM and XRTSIM
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```
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Compile the Vortex codebase
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Apptainer> make -s
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Run the programs by specifying the appropriate driver as shown below:
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SIMX
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Apptainer> ./ci/blackbox.sh --cores=2 --app=demo --driver=simx
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RTLSIM
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Apptainer> ./ci/blackbox.sh --cores=2 --app=demo --driver=rtlsim
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XRTSIM
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Apptainer> ./ci/blackbox.sh --cores=2 --app=demo --driver=xrt
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```
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### Vortex Bitstream on FPGA
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Common Commands
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```
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Apptainer> source /opt/xilinx/xrt/setup.sh
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Apptainer> source /tools/reconfig/xilinx/Vitis/2023.1/settings64.sh
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Apptainer> platforminfo -l
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```
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##### Building Vortex Bitstream
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```
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Apptainer> pwd
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/home/vortex/build
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Apptainer> source ci/toolchain_env.sh
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Apptainer> verilator --version
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Verilator 5.026 2024-06-15 rev v5.026-43-g065f36ab5
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Apptainer> cd hw/syn/xilinx/xrt
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Apptainer> PREFIX=test1 PLATFORM=xilinx_u50_gen3x16_xdma_5_202210_1 TARGET=hw NUM_CORES=1 make > build_u50_hw_1c.log 2>&1 &
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Creates ../test1_xilinx_u50_gen3x16_xdma_5_202210_1_hw/bin/vortex_afu.xclbin
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```
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##### Running Vortex Bitstream on FPGA
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```
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Apptainer> cd ../../../../
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Apptainer> pwd
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/home/vortex/build
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Apptainer> make -C runtime/ clean
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Apptainer> FPGA_BIN_DIR=hw/syn/xilinx/xrt/test1_xilinx_u50_gen3x16_xdma_5_202210_1_hw/bin TARGET=hw PLATFORM=xilinx_u50_gen3x16_xdma_5_202210_1 ./ci/blackbox.sh --driver=xrt --app=demo
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Verify following line being printed:
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info: device name=xilinx_u50_gen3x16_xdma_base_5, memory_capacity=0x200000000 bytes, memory_banks=32.
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```

‎miscs/apptainer/boost-package.deb‎

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‎miscs/apptainer/install_boost_openssl.sh‎

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#!/bin/bash
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set -e # Exit on error
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echo "Installing Boost and OpenSSL from .deb packages"
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# Extract and install Boost
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echo "Extracting Boost..."
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ar -x boost-package.deb
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ls
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mkdir -p /tmp/boost-extract
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tar --zstd --no-same-owner -xvf data.tar.zst -C /tmp/boost-extract
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ls -l /tmp/boost-extract/
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cp -r /tmp/boost-extract/opt/boost-1.66/ /opt/
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ls -l /opt/boost-1.66/
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rm -rf data.tar
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# Extract and install OpenSSL
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echo "Extracting OpenSSL..."
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ar -x openssl-package.deb
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mkdir -p /tmp/openssl-extract
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tar --zstd --no-same-owner -xvf data.tar.zst -C /tmp/openssl-extract
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ls -l /tmp/openssl-extract/
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cp -r /tmp/openssl-extract/opt/openssl-1.1/ /opt/
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ls -l /opt/openssl-1.1/
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rm -rf data.tar
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echo "Boost and OpenSSL installation complete!"

‎miscs/apptainer/openssl-package.deb‎

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‎miscs/apptainer/run_apptainer.sh‎

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#!/bin/bash
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# Set environment variables with fallback default values.
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# The :- means if the variable CONTAINER_IMAGE is not set or is empty, then use the default value vortex.sif
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export GIT_REPO_PATH=${GIT_REPO_PATH:-~/USERSCRATCH/vortex}
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export CONTAINER_IMAGE=${CONTAINER_IMAGE:-vortex.sif}
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export DEVNULL_BIND=${DEVNULL_BIND:-~/USERSCRATCH/devnull}
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export VORTEX_TOOLCHAIN_PATH=${VORTEX_TOOLCHAIN_PATH:-~/USERSCRATCH/tools}
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# Launch the Apptainer container with the bind mount
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apptainer shell --fakeroot --cleanenv --writable-tmpfs \
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--bind /dev/bus/usb,/sys/bus/pci \
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--bind /projects:/projects \
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--bind /lib/firmware:/lib/firmware \
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--bind /opt/xilinx/:/opt/xilinx/ \
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--bind /tools:/tools \
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--bind /netscratch:/netscratch \
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--bind "$VORTEX_TOOLCHAIN_PATH":/home/tools \
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--bind "$GIT_REPO_PATH":/home/vortex \
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"$CONTAINER_IMAGE"

‎miscs/apptainer/vortex.def‎

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Bootstrap: docker
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From: ubuntu:22.04
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%files
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install_boost_openssl.sh .
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openssl-package.deb .
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boost-package.deb .
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%post
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echo "Setting up the environment..."
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touch /var/log/apt/term.log
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if [ -f /var/log/apt/term.log ]; then
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chown root:adm /var/log/apt/term.log || true
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fi
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# Set environment variable to avoid interactive prompts during installation
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export DEBIAN_FRONTEND=noninteractive
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echo 'APT::Sandbox::User "root";' > /etc/apt/apt.conf.d/no-sandbox
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mkdir -p /netscratch
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# Update and install base dependencies (including wget here)
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apt-get update
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apt-get install -y libc6 fakeroot wget git vim
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# Fix dependency issues
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apt-get install -f -y || true
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dpkg --configure -a || true
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# Reinstall problematic packages
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apt-get remove --purge -y dbus fontconfig-config || true
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apt-get install -y dbus fontconfig-config || true
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rm -f /var/lib/dpkg/lock-frontend
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rm -f /var/lib/dpkg/lock
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rm -f /var/cache/apt/archives/lock
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# Adjust permissions for dbus helper
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chown -R root:root /usr/lib/dbus-1.0/dbus-daemon-launch-helper || true
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# Install necessary packages
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apt-get install -y fontconfig libfontconfig1 libpangoft2-1.0-0 libbluray2 \
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libpangocairo-1.0-0 libavformat58 libpango-1.0-0 \
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openjdk-11-jre-headless libcairo2 librsvg2-2 librsvg2-common \
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openjdk-11-jre-zero libtheora0 libavcodec58 libcairo-gobject2 \
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ca-certificates-java libchromaprint1 software-properties-common perl-modules bzip2 \
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unzip zlib1g-dev libtinfo5 g++ usbutils gawk bison gcc make tar python3.9 locales zstd uuid-dev ccache || true
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ln -s /usr/bin/python3 /usr/bin/python
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locale-gen en_US.UTF-8
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update-locale LANG=en_US.UTF-8 LANGUAGE=en_US.UTF-8 LC_ALL=en_US.UTF-8
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# Run dpkg to ensure configuration is complete
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dpkg --configure -a || true
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# Clean up apt cache
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apt-get clean
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rm -rf /var/lib/apt/lists/*
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echo "Setting up the environment..."
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# Install CMake 3.26
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echo "Installing CMake 3.26..."
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wget https://github.com/Kitware/CMake/releases/download/v3.26.0/cmake-3.26.0-linux-x86_64.sh -O /tmp/cmake.sh
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chmod +x /tmp/cmake.sh
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mkdir -p /opt/cmake
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/tmp/cmake.sh --skip-license --prefix=/opt/cmake
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ln -sf /opt/cmake/bin/cmake /usr/local/bin/cmake
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rm -f /tmp/cmake.sh
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# Copy the boost and openssl installation script into the container
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cp install_boost_openssl.sh /tmp/
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# Execute the installation script
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chmod +x /tmp/install_boost_openssl.sh
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/tmp/install_boost_openssl.sh
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# Clean up
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rm -f /tmp/install_boost_openssl.sh
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%environment
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export LANG=en_US.UTF-8
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export LANGUAGE=en_US.UTF-8
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export LC_ALL=en_US.UTF-8
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export HOME=/home
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export LD_LIBRARY_PATH=/opt/boost-1.66/lib:/opt/openssl-1.1/lib:$LD_LIBRARY_PATH
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%runscript
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exec /bin/bash
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%labels
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Author Rahul, Udit
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Version 2.0
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%test
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locale
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lsusb || echo "lsusb not available"
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ls -l /dev/null
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echo "Container test successful!"

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