Skip to content

How to reduce memory useage? #172

@qingzengLi

Description

@qingzengLi

Thank you for developing such a useful tool.
I have a cell–gene expression matrix with ~30,000 genes and ~60,000 cells. I attempted to run DoubletDetection on this dataset, and even when submitting the job to a node with 1 TB of RAM, it still exceeded the memory limit and failed.

Could you please advise on how to reduce the memory usage or handle such large datasets with DoubletDetection? Any recommendations or best practices would be greatly appreciated.

Thank you very much!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions