Defaults to placing log and tmp dirs in home dir

[afolarin]

ngsprojectdir:
@echo "Make Top level project directories"
mkdir -v -p $(INSTALLDIR)/ngs_projects &&
mkdir -v -p $(INSTALLDIR)/ngs_projects/raw_fastq &&
mkdir -v -p $(INSTALLDIR)/ngs_projects/config_files &&
mkdir -v -p $(INSTALLDIR)/ngs_projects/run_logs &&
mkdir -v -p $(INSTALLDIR)/ngs_projects/ngseasy_resources &&
mkdir -v -p $(HOME)/ngseasy_logs &&
mkdir -v -p $(HOME)/ngseasy_tmp

should why put log and tmp in the home dir ?
mkdir -v -p $(HOME)/ngseasy_logs
mkdir -v -p $(HOME)/ngseasy_tmp

[snewhouse]

yeah - all this needs cleaning up...rush job