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1. PHATE PHATE Public

   PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

   Python 526 79

2. MAGIC MAGIC Public

   MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

   Jupyter Notebook 375 98

3. SAUCIE SAUCIE Public

   Python 101 28

4. MELD MELD Public

   Quantifying experimental perturbations at single cell resolution

   Python 112 10

5. Multiscale_PHATE Multiscale_PHATE Public

   Creating multi-resolution embeddings and clusters from high dimensional data

   Jupyter Notebook 56 11

6. TrajectoryNet TrajectoryNet Public

   TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics

   Jupyter Notebook 129 16