SimiCviz/NAMESPACE at main · ML4BM-Lab/SimiCviz · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
# Generated by roxygen2: do not edit by hand

export(AUCProcessor)
export(SimiCvizExperiment)
export(auc_list_to_df)
export(calculate_activity_scores)
export(calculate_dissimilarity)
export(calculate_ecdf_auc)
export(compute_auc)
export(export_SimiCviz_csv)
export(get_auc)
export(get_tf_network)
export(is.SimiCvizExperiment)
export(load_SimiCPipeline)
export(load_cell_labels)
export(load_collected_auc)
export(load_expression_matrix)
export(load_from_csv)
export(plot_auc_cumulative)
export(plot_auc_distributions)
export(plot_auc_heatmap)
export(plot_auc_summary_statistics)
export(plot_dissimilarity_heatmap)
export(plot_r2_distribution)
export(plot_target_weights)
export(plot_tf_network_heatmap)
export(plot_tf_weights)
export(read_auc_csv)
export(read_auc_pickle)
export(read_pickle)
export(read_weights_csv)
export(read_weights_pickle)
export(save_collected_auc)
export(setCellLabels)
export(setLabelNames)
exportClasses(AUCProcessor)
exportClasses(SimiCvizExperiment)
exportMethods(compute_auc)
exportMethods(get_auc)
exportMethods(show)
import(ggplot2)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,SnowParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpnworkers)
importFrom(dplyr,"%>%")
importFrom(graphics,abline)
importFrom(graphics,grid)
importFrom(graphics,hist)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,title)
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(methods,show)
importFrom(utils,head)
importFrom(utils,read.csv)