Question about unique alignments visualization

[gitcruz]

Hi Maria,

My understanding is that one the nucmer alignments are preprocessed with DotPrep.py, the visualization tool shows the longest unique alignments (based on their cumulative length) and the "Unique: Fully Load" button loads also the short unique ones. I am right? Is there a default value for picking the longest unique ones or the online tool is just showing the top N alignments?

Thanks,
Fernando