Tree not found?

[mkandziora]

Trying a random example:
physcraper_run.py -s pg_127 -t tree804 -tb -db PATH_TO_LOCAL -o pg_127

Traceback (most recent call last):
File "/root/physcraper_27072020/venv3/bin/physcraper_run.py", line 7, in
exec(compile(f.read(), file, 'exec'))
File "/root/physcraper_27072020/physcraper-main/bin/physcraper_run.py", line 180, in
configfile = conf)
File "/root/physcraper_27072020/physcraper-main/physcraper/opentree_helpers.py", line 371, in scraper_from_opentree
tree_id=tree_id)
File "/root/physcraper_27072020/physcraper-main/physcraper/opentree_helpers.py", line 259, in generate_ATT_from_phylesystem
return_format="otu_id"))
TypeError: 'NoneType' object is not iterable

[snacktavish]

Ah, it looks like this error happens when the ingroup isn't specified in the input tree. I'll add a fix.

[snacktavish]

Fixed in e2cf02b, merged to main