From 78e8601a9ca1e6420feaf64abab4fd6cc82e3b2a Mon Sep 17 00:00:00 2001 From: Thomas BERTHOMIER Date: Thu, 1 May 2025 16:35:53 +0200 Subject: [PATCH] Correcting maxatac data pointing it to constants --- maxatac/utilities/system_tools.py | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/maxatac/utilities/system_tools.py b/maxatac/utilities/system_tools.py index 17b96ab..c745bc2 100644 --- a/maxatac/utilities/system_tools.py +++ b/maxatac/utilities/system_tools.py @@ -4,7 +4,7 @@ import sys import subprocess from os import path, getcwd, makedirs, error, walk, environ -from maxatac.utilities.constants import CPP_LOG_LEVEL +from maxatac.utilities.constants import CPP_LOG_LEVEL, maxatac_data_path from re import match from multiprocessing import cpu_count @@ -205,9 +205,6 @@ def update_reference_genome_paths(args): """ logging.info(f"Generating Paths for genome build: {args.genome} \n") - # build maxatac data path - maxatac_data_path = os.path.join(os.path.expanduser('~'), "opt", "maxatac", "data") - # build genome specific paths blacklist_path = os.path.join(maxatac_data_path, f"{args.genome}/{args.genome}_maxatac_blacklist.bed") # maxATAC extended blacklist as bed