more rubocop fixes

Author: shilpigoeldev

lib/import/colorectal/providers/leeds/leeds_handler_new_colorectal.rb

@@ -206,10 +206,7 @@ def process_result_variant_rec(genocolorectal, record, genotypes)
                          end
             return if @pos_gene.blank?
 
-            @cdna_mutations = @result&.match(CDNA_REGEX)
-            @exonic_mutations = @result&.match(EXON_VARIANT_REGEX)
-            @protein_impact = @result&.match(PROTEIN_REGEX)
-
+            extract_mutations_from_src(@result)
             process_variant_rec(genocolorectal, teststatus, record, genotypes)
           end
 
@@ -221,20 +218,22 @@ def process_protein_impact_variant_rec(genocolorectal, record, genotypes)
             gene = @value1&.scan(COLORECTAL_GENES_REGEX)
             @pos_gene = gene.flatten.uniq
             @pos_gene = ['PMS2'] if @value1 =~ /NM_000535.5/
-            teststatus = case @value1
-                         when /C1/, /C2/
-                           10
-                         else
-                           2
-                         end
             return if @pos_gene.blank?
 
-            @cdna_mutations = @value1&.match(CDNA_REGEX)
-            @exonic_mutations = @value1&.match(EXON_VARIANT_REGEX)
-            @protein_impact = @value1&.match(PROTEIN_REGEX)
+            teststatus = determine_protein_impact_test_status
+            extract_mutations_from_src(@value1)
             process_variant_rec(genocolorectal, teststatus, record, genotypes)
           end
 
+          def determine_protein_impact_test_status
+            case @value1
+            when /C1/, /C2/
+              10
+            else
+              2
+            end
+          end
+
           def gene_variant_rec?(genocolorectal, record, genotypes)
             return false if @value2.nil?
 
@@ -269,9 +268,7 @@ def first_of_report_variant_rec?(genocolorectal, record, genotypes)
 
             @pos_gene = [$LAST_MATCH_INFO[:colorectal]]
             if @pos_gene.present?
-              @cdna_mutations = @report&.match(CDNA_REGEX)
-              @exonic_mutations = @report&.match(EXON_VARIANT_REGEX)
-              @protein_impact = @report&.match(PROTEIN_REGEX)
+              extract_mutations_from_src(@report)
               process_variant_rec(genocolorectal, 2, record, genotypes)
               negative_genes = @genes_panel - @pos_gene
               process_status_genes(1, negative_genes, genocolorectal, genotypes)
@@ -405,6 +402,12 @@ def result_variant_absent_targ_rec?(genotype, genotypes)
             true
           end
 
+          def extract_mutations_from_src(src)
+            @cdna_mutations = src&.match(CDNA_REGEX)
+            @exonic_mutations = src&.match(EXON_VARIANT_REGEX)
+            @protein_impact = src&.match(PROTEIN_REGEX)
+          end
+
           def add_geneticinheritance(genocolorectal)
             geneticinheritance = if @value12 =~ /mosaic/i ||
                                     @result =~ /VAF/ || @result =~ /dosage ~0\./