From df42f31c92882b4b636b9da563e72fe56dc4aa62 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Mon, 23 Feb 2026 17:46:38 -0800 Subject: [PATCH 01/24] changes for azure blob --- Makefile | 4 +- pyproject.toml | 4 + serve/Dockerfile | 2 +- .../inferenceserver/README_object_storage.md | 277 +- serve/inferenceserver/api_server/config.py | 38 +- .../inferenceserver/api_server/cpu_worker.py | 154 +- .../api_server/object_storage.py | 354 +- serve/inferenceserver/requirements.txt | 5 + serve/inferenceserver/scripts/startup.sh | 9 + uv.lock | 7689 +++++++++-------- 10 files changed, 4573 insertions(+), 3963 deletions(-) diff --git a/Makefile b/Makefile index 13ddf2b7a..3b7df1525 100644 --- a/Makefile +++ b/Makefile @@ -97,9 +97,9 @@ docs-dev: .PHONY: container-service # Example DOCKER_REPO?=nvcr.io/dycvht5ows21 -E2S_RELEASE_TAG?=0.11.0 +E2S_RELEASE_TAG?=0.12.0 E2S_IMAGE_NAME=$(DOCKER_REPO)/earth2studio-scicomp -E2S_IMAGE_TAG=v$(E2S_RELEASE_TAG).20260220.0 +E2S_IMAGE_TAG=v$(E2S_RELEASE_TAG).20260223.0 container-service: @test -n "$(DOCKER_REPO)" || (echo "DOCKER_REPO is not set!" && exit 1) DOCKER_BUILDKIT=1 docker build -t $(E2S_IMAGE_NAME):$(E2S_IMAGE_TAG) -f serve/Dockerfile . diff --git a/pyproject.toml b/pyproject.toml index f9570b087..044f8e79e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -103,6 +103,10 @@ serve = [ "aiofiles>=23.0.0", "httpx>=0.25.0", "hydra-core>=1.3.0", + # Object storage related + "cryptography>=41.0.0", + "multi-storage-client[azure-storage-blob]", + "azure-storage-blob>=12.19.0", ] # PX Models ace2 = [ diff --git a/serve/Dockerfile b/serve/Dockerfile index 97ccf17f5..d5503e53e 100644 --- a/serve/Dockerfile +++ b/serve/Dockerfile @@ -13,7 +13,7 @@ ENV PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True ARG MAKANI_HASH=28f38e3e929ed1303476518552c64673bbd6f722 ARG E2G_HASH=11dcf1b0787a7eb6a8497a3a5a5e1fdcc31232d3 -ARG E2S_HASH=b1f856388f7665e2cd1942e90d6460dcebffb7ba +ARG E2S_HASH=8ca8771c6be6ca051e082d41b99378fa14b58d9f WORKDIR /workspace diff --git a/serve/inferenceserver/README_object_storage.md b/serve/inferenceserver/README_object_storage.md index b455137d1..08349e0a4 100644 --- a/serve/inferenceserver/README_object_storage.md +++ b/serve/inferenceserver/README_object_storage.md @@ -1,18 +1,25 @@ # Object Storage Support -This document describes how to configure and use object storage (AWS S3 with CloudFront) for storing -workflow results in the Earth2Studio Inference Server. +This document describes how to configure and use object storage (AWS S3 with CloudFront or +Azure Blob Storage) for storing workflow results in the Earth2Studio Inference Server. ## Overview By default, workflow results are stored locally on the inference server. When object storage is -enabled, results are automatically uploaded to S3 and served via CloudFront signed URLs. This -provides: +enabled, results are automatically uploaded to your chosen cloud storage provider (AWS S3 or +Azure Blob Storage) and served via signed URLs. This provides: - **Scalability**: Offload storage from the inference server -- **Performance**: CloudFront CDN for fast global access +- **Performance**: Fast global access via CDN (CloudFront for S3) or direct Azure Blob Storage access - **Security**: Time-limited signed URLs for secure access -- **Seamless Client Experience**: The Python client SDK automatically handles both storage types +- **Seamless Client Experience**: The Python client SDK automatically handles all storage types + +## Storage Provider Options + +The inference server supports two storage providers: + +- **AWS S3**: With optional CloudFront CDN for enhanced performance +- **Azure Blob Storage**: Direct access with SAS (Shared Access Signature) URLs ## AWS Prerequisites @@ -75,15 +82,69 @@ users](https://docs.aws.amazon.com/IAM/latest/UserGuide/id_users_create.html) fo detailed instructions. The credentials need `s3:PutObject`, `s3:GetObject`, `s3:DeleteObject`, and `s3:ListBucket` permissions on your bucket. +## Azure Prerequisites + +Before enabling Azure Blob Storage, you need to set up the following Azure resources: + +### 1. Azure Storage Account + +Create an Azure Storage Account: + +1. Go to Azure Portal → Storage accounts → Create +2. Choose a unique storage account name +3. Select your resource group and region +4. Choose performance tier (Standard recommended) +5. Note the **Storage account name** (e.g., `mystorageaccount`) + +### 2. Storage Container + +Create a blob container in your storage account: + +1. Go to your Storage Account → Containers +2. Click "+ Container" +3. Choose a container name (e.g., `workflow-results`) +4. Set Public access level to "Private" (recommended for security) + +### 3. Connection String or Account Key + +You'll need either: + +#### Option A: Connection String (Recommended) + +1. Go to Storage Account → Access keys +2. Click "Show" next to a key +3. Copy the **Connection string** (format: + `DefaultEndpointsProtocol=https;AccountName=...;AccountKey=...;EndpointSuffix=core.windows.net`) + +#### Option B: Account Name and Key + +1. Go to Storage Account → Access keys +2. Note the **Storage account name** +3. Click "Show" next to a key and copy the **Account key** + +The account key is required for generating SAS (Shared Access Signature) signed URLs. + +### 4. Permissions + +Ensure your Azure credentials have the following permissions: + +- `Microsoft.Storage/storageAccounts/blobServices/containers/write` (to create containers if needed) +- `Microsoft.Storage/storageAccounts/blobServices/containers/read` +- `Microsoft.Storage/storageAccounts/blobServices/containers/blobs/write` +- `Microsoft.Storage/storageAccounts/blobServices/containers/blobs/read` + ## Server Configuration ### Environment Variables -Configure object storage using environment variables: +Configure object storage using environment variables. Choose either AWS S3 or Azure Blob Storage: + +#### AWS S3 Configuration ```bash # Enable object storage export OBJECT_STORAGE_ENABLED=true +export OBJECT_STORAGE_TYPE=s3 # S3 Configuration export OBJECT_STORAGE_BUCKET=your-bucket-name @@ -111,13 +172,46 @@ export CLOUDFRONT_PRIVATE_KEY_PATH=/path/to/cloudfront-private-key.pem export OBJECT_STORAGE_SIGNED_URL_EXPIRES_IN=3600 # URL expiration in seconds ``` +#### Azure Blob Storage Configuration + +```bash +# Enable object storage +export OBJECT_STORAGE_ENABLED=true +export OBJECT_STORAGE_TYPE=azure + +# Azure Configuration +export OBJECT_STORAGE_BUCKET=your-container-name # Container name (used as bucket equivalent) +export OBJECT_STORAGE_PREFIX=outputs # Optional: prefix for uploaded files + +# Azure Credentials (Connection String - Recommended) +export AZURE_CONNECTION_STRING="DefaultEndpointsProtocol=https;AccountName=mystorageaccount;AccountKey=...;EndpointSuffix=core.windows.net" + +# OR Azure Credentials (Account Name and Key - Alternative) +export AZURE_STORAGE_ACCOUNT_NAME=mystorageaccount +export AZURE_STORAGE_ACCOUNT_KEY=... # Required for SAS URL generation + +# Optional: Container name (defaults to OBJECT_STORAGE_BUCKET if not set) +export AZURE_CONTAINER_NAME=workflow-results + +# Transfer Configuration +export OBJECT_STORAGE_MAX_CONCURRENCY=16 # Concurrent upload threads +export OBJECT_STORAGE_MULTIPART_CHUNKSIZE=8388608 # 8MB chunk size +export OBJECT_STORAGE_USE_RUST_CLIENT=true # High-performance Rust client + +# Signed URL Configuration +export OBJECT_STORAGE_SIGNED_URL_EXPIRES_IN=3600 # SAS URL expiration in seconds +``` + ### YAML Configuration Alternatively, configure via `config.yaml`: +#### AWS S3 YAML Configuration + ```yaml object_storage: enabled: true + storage_type: s3 bucket: your-bucket-name region: us-east-1 prefix: outputs @@ -131,26 +225,49 @@ object_storage: signed_url_expires_in: 3600 ``` +#### Azure Blob Storage YAML Configuration + +```yaml +object_storage: + enabled: true + storage_type: azure + bucket: your-container-name # Container name (used as bucket equivalent) + prefix: outputs + max_concurrency: 16 + multipart_chunksize: 8388608 + use_rust_client: true + azure_connection_string: "DefaultEndpointsProtocol=https;AccountName=mystorageaccount;AccountKey=...;EndpointSuffix=core.windows.net" + azure_account_name: mystorageaccount # Optional if in connection string + azure_account_key: ... # Required for SAS URL generation + azure_container_name: workflow-results # Optional, defaults to bucket + signed_url_expires_in: 3600 +``` + ### Configuration Parameters Reference | Parameter | Environment Variable | Default | Description | |-----------|---------------------|---------|-------------| | `enabled` | `OBJECT_STORAGE_ENABLED` | `false` | Enable object storage | -| `bucket` | `OBJECT_STORAGE_BUCKET` | `null` | S3 bucket name | -| `region` | `OBJECT_STORAGE_REGION` | `us-east-1` | AWS region | +| `storage_type` | `OBJECT_STORAGE_TYPE` | `s3` | Storage provider: `s3` or `azure` | +| `bucket` | `OBJECT_STORAGE_BUCKET` | `null` | S3 bucket name or Azure container name | +| `region` | `OBJECT_STORAGE_REGION` | `us-east-1` | AWS region (S3 only) | | `prefix` | `OBJECT_STORAGE_PREFIX` | `outputs` | Remote prefix for files | -| `access_key_id` | `OBJECT_STORAGE_ACCESS_KEY_ID` | `null` | AWS access key ID | -| `secret_access_key` | `OBJECT_STORAGE_SECRET_ACCESS_KEY` | `null` | AWS secret access key | -| `session_token` | `OBJECT_STORAGE_SESSION_TOKEN` | `null` | AWS session token | +| `access_key_id` | `OBJECT_STORAGE_ACCESS_KEY_ID` | `null` | AWS access key ID (S3 only) | +| `secret_access_key` | `OBJECT_STORAGE_SECRET_ACCESS_KEY` | `null` | AWS secret access key (S3 only) | +| `session_token` | `OBJECT_STORAGE_SESSION_TOKEN` | `null` | AWS session token (S3 only) | | `endpoint_url` | `OBJECT_STORAGE_ENDPOINT_URL` | `null` | Custom endpoint (S3-compatible) | -| `use_transfer_acceleration` | `OBJECT_STORAGE_TRANSFER_ACCELERATION` | `true` | Enable S3 Transfer Acceleration | +| `use_transfer_acceleration` | `OBJECT_STORAGE_TRANSFER_ACCELERATION` | `true` | Enable S3 Transfer Acceleration (S3 only) | | `max_concurrency` | `OBJECT_STORAGE_MAX_CONCURRENCY` | `16` | Max concurrent transfers | | `multipart_chunksize` | `OBJECT_STORAGE_MULTIPART_CHUNKSIZE` | `8388608` | Multipart chunk size (bytes) | | `use_rust_client` | `OBJECT_STORAGE_USE_RUST_CLIENT` | `true` | Use high-performance Rust client | -| `cloudfront_domain` | `CLOUDFRONT_DOMAIN` | `null` | CloudFront distribution domain | -| `cloudfront_key_pair_id` | `CLOUDFRONT_KEY_PAIR_ID` | `null` | CloudFront key pair ID | -| `cloudfront_private_key_path` | `CLOUDFRONT_PRIVATE_KEY_PATH` | `null` | Path to private key PEM file | +| `cloudfront_domain` | `CLOUDFRONT_DOMAIN` | `null` | CloudFront distribution domain (S3 only) | +| `cloudfront_key_pair_id` | `CLOUDFRONT_KEY_PAIR_ID` | `null` | CloudFront key pair ID (S3 only) | +| `cloudfront_private_key_path` | `CLOUDFRONT_PRIVATE_KEY_PATH` | `null` | Path to private key PEM file (S3 only) | +| `azure_connection_string` | `AZURE_CONNECTION_STRING` | `null` | Azure connection string (Azure only, recommended) | +| `azure_account_name` | `AZURE_STORAGE_ACCOUNT_NAME` | `null` | Azure storage account name (Azure only) | +| `azure_account_key` | `AZURE_STORAGE_ACCOUNT_KEY` | `null` | Azure account key for SAS URLs (Azure only) | +| `azure_container_name` | `AZURE_CONTAINER_NAME` | `null` | Azure container name (Azure only, defaults to bucket) | | `signed_url_expires_in` | `OBJECT_STORAGE_SIGNED_URL_EXPIRES_IN` | `3600` | Signed URL expiration (seconds) | @@ -158,6 +275,8 @@ object_storage: When object storage is enabled, the workflow result metadata includes additional fields: +### AWS S3 Example + ```json { "request_id": "exec_1769560728_10ed9d3c", @@ -174,12 +293,30 @@ When object storage is enabled, the workflow result metadata includes additional } ``` +### Azure Blob Storage Example + +```json +{ + "request_id": "exec_1769560728_10ed9d3c", + "status": "completed", + "storage_type": "azure", + "signed_url": + "https://mystorageaccount.blob.core.windows.net/workflow-results/outputs/exec_1769560728_10ed9d3c?sv=2021-06-08&ss=b&srt=co&sp=rl&se=2025-01-01T00:00:00Z&st=2024-12-31T00:00:00Z&spr=https&sig=...", + "remote_path": "outputs/exec_1769560728_10ed9d3c", + "output_files": [ + {"path": "exec_1769560728_10ed9d3c/results.zarr/.zarray", "size": 123}, + {"path": "exec_1769560728_10ed9d3c/results.zarr/t2m/0.0.0", "size": 4567890} + ] +} +``` + ### Storage Type Values | Value | Description | |-------|-------------| | `server` | Results stored locally on the inference server | | `s3` | Results stored in S3, accessible via CloudFront signed URL | +| `azure` | Results stored in Azure Blob Storage, accessible via SAS signed URL | ## Client Usage @@ -209,7 +346,7 @@ request_result = client.run_inference_sync( InferenceRequest(parameters={"start_time": [datetime(2025, 8, 21, 6)]}) ) -# Automatically downloads from S3 if storage_type is "s3" +# Automatically downloads from S3 or Azure if storage_type is "s3" or "azure" for file in request_result.output_files[:5]: content = client.download_result(request_result, file.path) print(f"Downloaded {file.path}: {len(content.getvalue())} bytes") @@ -217,7 +354,10 @@ for file in request_result.output_files[:5]: ### Using Signed URLs Directly -For advanced use cases, you can use the signed URL directly: +For advanced use cases, you can use the signed URL directly. The format differs between +S3/CloudFront and Azure: + +#### Using CloudFront Signed URLs ```python import requests @@ -237,6 +377,22 @@ file_url = f"{base_url}/{file_path}?{query_params}" response = requests.get(file_url) ``` +#### Using Azure SAS URLs + +```python +import requests + +# Get the signed URL from the result +signed_url = request_result.signed_url +# Example: +# https://mystorageaccount.blob.core.windows.net/workflow-results/outputs/exec_123?sv=...&sig=... + +# Azure SAS URLs already include the full path - append the file path +file_path = "results.zarr/.zarray" +file_url = f"{signed_url}/{file_path}" if not signed_url.endswith("/") else f"{signed_url}{file_path}" +response = requests.get(file_url) +``` + ### Using with Xarray and Zarr The client provides an fsspec mapper for opening Zarr stores directly: @@ -255,6 +411,8 @@ print(ds) ## Signed URL Format +### AWS S3 / CloudFront Signed URLs + CloudFront signed URLs contain three query parameters: ```text @@ -270,10 +428,35 @@ https://d30anq61ot046p.cloudfront.net/outputs/exec_123/*?Policy=eyJTdGF0ZW1lbnQi The wildcard (`*`) in the URL path allows access to all files under that prefix. +### Azure Blob Storage SAS URLs + +Azure SAS (Shared Access Signature) URLs contain multiple query parameters: + +```text +https://mystorageaccount.blob.core.windows.net/workflow-results/outputs/exec_123?\ +sv=2021-06-08&ss=b&srt=co&sp=rl&se=2025-01-01T00:00:00Z&st=2024-12-31T00:00:00Z&spr=https&sig=ABC123... +``` + +| Parameter | Description | +|-----------|-------------| +| `sv` | Service version (API version) | +| `ss` | Services (b=blob) | +| `srt` | Resource types (co=container and object) | +| `sp` | Permissions (rl=read and list) | +| `se` | Expiry time (UTC) | +| `st` | Start time (UTC) | +| `spr` | Protocol (https) | +| `sig` | Signature (HMAC-SHA256 of the string-to-sign) | + +The SAS token provides read and list permissions for all objects in the container under the +specified prefix. + ## Testing Run object storage integration tests: +### AWS S3 Testing + ```bash # Set required environment variables export TEST_S3_BUCKET=my-test-bucket @@ -290,25 +473,71 @@ export TEST_CLOUDFRONT_PRIVATE_KEY_PATH=/path/to/private.pem pytest test/integration/test_object_storage.py::TestCloudFrontSignedUrl -v ``` +### Azure Blob Storage Testing + +```bash +# Set required environment variables +export TEST_AZURE_CONTAINER=my-test-container +export AZURE_CONNECTION_STRING="DefaultEndpointsProtocol=https;AccountName=...;AccountKey=...;EndpointSuffix=core.windows.net" +export AZURE_STORAGE_ACCOUNT_NAME=mystorageaccount +export AZURE_STORAGE_ACCOUNT_KEY=... + +# Run Azure upload tests +pytest test/integration/test_object_storage.py -v + +# Run Azure SAS URL tests +pytest test/integration/test_object_storage.py::TestAzureSASUrl -v +``` + ## Troubleshooting ### Common Issues +#### AWS S3 / CloudFront Issues + 1. **403 Forbidden from CloudFront** - Verify the S3 bucket policy allows CloudFront OAC access - Check that the CloudFront distribution is configured with the correct origin - Ensure the key pair is in a Key Group associated with the distribution -2. **Signed URL expired** - - Increase `signed_url_expires_in` configuration - - Request fresh results from the API (URLs are regenerated) - -3. **Upload failures** +2. **Upload failures** - Verify IAM credentials have `s3:PutObject` permission - Check bucket name and region are correct - If using Transfer Acceleration, ensure it's enabled on the bucket -4. **Slow uploads** +3. **Slow uploads** - Enable `use_rust_client` for better performance - Increase `max_concurrency` for more parallel uploads - Enable `use_transfer_acceleration` if uploading from distant regions + +#### Azure Blob Storage Issues + +1. **403 Forbidden from Azure** + - Verify the connection string is correct and not expired + - Check that the storage account name and container name are correct + - Ensure the account key is valid (if using account key authentication) + +2. **SAS URL generation failures** + - Ensure `azure_account_name` and `azure_account_key` are provided + - Verify the account key has not been rotated + - Check that the container exists and is accessible + +3. **Upload failures** + - Verify the connection string has write permissions + - Check that the container exists (it will be created automatically if permissions allow) + - Ensure the storage account is not in a restricted network configuration + +4. **Connection string parsing errors** + - Verify the connection string format is correct: `DefaultEndpointsProtocol=https;AccountName=...;AccountKey=...;EndpointSuffix=...` + - Ensure all required components (AccountName, AccountKey) are present + - For custom endpoints, include `BlobEndpoint=` in the connection string + +#### General Issues + +1. **Signed URL expired** + - Increase `signed_url_expires_in` configuration + - Request fresh results from the API (URLs are regenerated) + +2. **Storage type not recognized** + - Ensure `OBJECT_STORAGE_TYPE` is set to either `s3` or `azure` (lowercase) + - Check that the storage type matches your configuration (S3 config for `s3`, Azure config for `azure`) diff --git a/serve/inferenceserver/api_server/config.py b/serve/inferenceserver/api_server/config.py index bc4c38d69..9615e3f10 100644 --- a/serve/inferenceserver/api_server/config.py +++ b/serve/inferenceserver/api_server/config.py @@ -27,7 +27,7 @@ from dataclasses import dataclass, field from logging import LogRecord from pathlib import Path -from typing import Any, Literal, Optional +from typing import Any, Literal, Optional, cast from hydra import compose, initialize_config_dir from hydra.core.global_hydra import GlobalHydra @@ -111,9 +111,10 @@ class CORSConfig: @dataclass class ObjectStorageConfig: - """Object storage configuration for S3/CloudFront""" + """Object storage configuration for S3/CloudFront and Azure Blob Storage""" enabled: bool = False + storage_type: Literal["s3", "azure"] = "s3" # Storage provider type # S3 configuration bucket: str | None = None region: str = "us-east-1" @@ -133,6 +134,15 @@ class ObjectStorageConfig: cloudfront_private_key: str | None = None # PEM private key content # Signed URL settings signed_url_expires_in: int = 86400 # Default 24 hours + # Azure Blob Storage configuration + azure_connection_string: str | None = None # Azure connection string + azure_account_name: str | None = None # Azure storage account name + azure_account_key: str | None = ( + None # Azure storage account key (for SAS token generation) + ) + azure_container_name: str | None = ( + None # Azure container name (falls back to bucket if not set) + ) @dataclass @@ -310,6 +320,13 @@ def _apply_env_overrides(self) -> None: self._config.object_storage.enabled = ( os.getenv("OBJECT_STORAGE_ENABLED", "").lower() == "true" ) + if os.getenv("OBJECT_STORAGE_TYPE"): + storage_type = os.getenv("OBJECT_STORAGE_TYPE", "").lower() + if storage_type in ["s3", "azure"]: + self._config.object_storage.storage_type = cast( + Literal["s3", "azure"], storage_type + ) + if os.getenv("OBJECT_STORAGE_BUCKET"): self._config.object_storage.bucket = os.getenv("OBJECT_STORAGE_BUCKET") if os.getenv("OBJECT_STORAGE_REGION"): @@ -377,6 +394,23 @@ def _apply_env_overrides(self) -> None: default=self._config.object_storage.signed_url_expires_in, ) ) + # Azure Blob Storage overrides + if os.getenv("AZURE_CONNECTION_STRING"): + self._config.object_storage.azure_connection_string = os.getenv( + "AZURE_CONNECTION_STRING" + ) + if os.getenv("AZURE_STORAGE_ACCOUNT_NAME"): + self._config.object_storage.azure_account_name = os.getenv( + "AZURE_STORAGE_ACCOUNT_NAME" + ) + if os.getenv("AZURE_STORAGE_ACCOUNT_KEY"): + self._config.object_storage.azure_account_key = os.getenv( + "AZURE_STORAGE_ACCOUNT_KEY" + ) + if os.getenv("AZURE_CONTAINER_NAME"): + self._config.object_storage.azure_container_name = os.getenv( + "AZURE_CONTAINER_NAME" + ) logger.debug("Environment variable overrides applied") diff --git a/serve/inferenceserver/api_server/cpu_worker.py b/serve/inferenceserver/api_server/cpu_worker.py index 88e745ab4..a5021d52d 100644 --- a/serve/inferenceserver/api_server/cpu_worker.py +++ b/serve/inferenceserver/api_server/cpu_worker.py @@ -553,8 +553,12 @@ def process_object_storage_upload( # Upload to object storage if enabled - if config.object_storage.enabled and config.object_storage.bucket: - from api_server.object_storage import ( + # Check if object storage is enabled and properly configured + if config.object_storage.enabled and ( + config.object_storage.bucket + or config.object_storage.storage_type == "azure" + ): + from earth2studio_api_server.object_storage import ( MSCObjectStorage, ObjectStorageError, ) @@ -570,41 +574,70 @@ def process_object_storage_upload( # Create S3 storage instance storage_kwargs = { "bucket": config.object_storage.bucket, - "region": config.object_storage.region, - "use_transfer_acceleration": config.object_storage.use_transfer_acceleration, + "storage_type": config.object_storage.storage_type, "max_concurrency": config.object_storage.max_concurrency, "multipart_chunksize": config.object_storage.multipart_chunksize, "use_rust_client": config.object_storage.use_rust_client, } - # Add optional credentials - if ( - config.object_storage.access_key_id - and config.object_storage.secret_access_key - ): - storage_kwargs["access_key_id"] = config.object_storage.access_key_id - storage_kwargs["secret_access_key"] = ( - config.object_storage.secret_access_key - ) - if config.object_storage.session_token: - storage_kwargs["session_token"] = config.object_storage.session_token - if config.object_storage.endpoint_url: - storage_kwargs["endpoint_url"] = config.object_storage.endpoint_url - - # Add CloudFront configuration for signed URLs - if config.object_storage.cloudfront_domain: - storage_kwargs["cloudfront_domain"] = ( - config.object_storage.cloudfront_domain - ) - if config.object_storage.cloudfront_key_pair_id: - storage_kwargs["cloudfront_key_pair_id"] = ( - config.object_storage.cloudfront_key_pair_id - ) - if config.object_storage.cloudfront_private_key: - storage_kwargs["cloudfront_private_key"] = ( - config.object_storage.cloudfront_private_key + # Add storage-type-specific configuration + if config.object_storage.storage_type == "s3": + # S3-specific parameters + storage_kwargs["region"] = config.object_storage.region + storage_kwargs["use_transfer_acceleration"] = ( + config.object_storage.use_transfer_acceleration ) + # Add optional S3 credentials + if ( + config.object_storage.access_key_id + and config.object_storage.secret_access_key + ): + storage_kwargs["access_key_id"] = ( + config.object_storage.access_key_id + ) + storage_kwargs["secret_access_key"] = ( + config.object_storage.secret_access_key + ) + if config.object_storage.session_token: + storage_kwargs["session_token"] = ( + config.object_storage.session_token + ) + if config.object_storage.endpoint_url: + storage_kwargs["endpoint_url"] = config.object_storage.endpoint_url + + # Add CloudFront configuration for signed URLs + if config.object_storage.cloudfront_domain: + storage_kwargs["cloudfront_domain"] = ( + config.object_storage.cloudfront_domain + ) + if config.object_storage.cloudfront_key_pair_id: + storage_kwargs["cloudfront_key_pair_id"] = ( + config.object_storage.cloudfront_key_pair_id + ) + if config.object_storage.cloudfront_private_key: + storage_kwargs["cloudfront_private_key"] = ( + config.object_storage.cloudfront_private_key + ) + elif config.object_storage.storage_type == "azure": + # Azure-specific parameters + if config.object_storage.azure_connection_string: + storage_kwargs["azure_connection_string"] = ( + config.object_storage.azure_connection_string + ) + if config.object_storage.azure_account_name: + storage_kwargs["azure_account_name"] = ( + config.object_storage.azure_account_name + ) + if config.object_storage.azure_account_key: + storage_kwargs["azure_account_key"] = ( + config.object_storage.azure_account_key + ) + if config.object_storage.azure_container_name: + storage_kwargs["azure_container_name"] = ( + config.object_storage.azure_container_name + ) + try: storage = MSCObjectStorage(**storage_kwargs) except Exception as e: @@ -620,8 +653,13 @@ def process_object_storage_upload( ) # Upload the output directory + storage_location = ( + f"s3://{config.object_storage.bucket}" + if config.object_storage.storage_type == "s3" + else f"azure://{config.object_storage.azure_container_name or config.object_storage.bucket}" + ) logger.info( - f"Uploading {output_path} to s3://{config.object_storage.bucket}/{remote_prefix}" + f"Uploading {output_path} to {storage_location}/{remote_prefix}" ) try: @@ -645,23 +683,36 @@ def process_object_storage_upload( f"Failed to upload to object storage: {upload_result.errors}", ) - storage_type = "s3" + storage_type = config.object_storage.storage_type logger.info( f"Successfully uploaded {upload_result.files_uploaded} files " f"({upload_result.total_bytes} bytes) to {upload_result.destination}" ) - # Generate signed URL if CloudFront is configured - cloudfront_configured = all( - [ - config.object_storage.cloudfront_domain, - config.object_storage.cloudfront_key_pair_id, - config.object_storage.cloudfront_private_key, - ] - ) + # Generate signed URL if configured + # For S3: requires CloudFront configuration + # For Azure: requires account_name and account_key + can_generate_signed_url = False + if storage_type == "s3": + can_generate_signed_url = all( + [ + config.object_storage.cloudfront_domain, + config.object_storage.cloudfront_key_pair_id, + config.object_storage.cloudfront_private_key, + ] + ) + elif storage_type == "azure": + can_generate_signed_url = all( + [ + config.object_storage.azure_account_name, + config.object_storage.azure_account_key, + ] + ) - if not cloudfront_configured: - logger.info("CloudFront not configured, skipping signed URL generation") + if not can_generate_signed_url: + logger.info( + f"Signed URL generation not configured for {storage_type}, skipping" + ) else: try: signed_url_path = f"{remote_prefix}/*" @@ -691,10 +742,19 @@ def process_object_storage_upload( storage_info = { "storage_type": storage_type, } - if storage_type == "s3" and remote_prefix: - storage_info["remote_path"] = ( - f"s3://{config.object_storage.bucket}/{remote_prefix}" - ) + if remote_prefix: + if storage_type == "s3": + storage_info["remote_path"] = ( + f"s3://{config.object_storage.bucket}/{remote_prefix}" + ) + elif storage_type == "azure": + container_name = ( + config.object_storage.azure_container_name + or config.object_storage.bucket + ) + storage_info["remote_path"] = ( + f"azure://{container_name}/{remote_prefix}" + ) if signed_url: storage_info["signed_url"] = signed_url @@ -732,7 +792,7 @@ def process_object_storage_upload( "signed_url": signed_url, } - if upload_result and storage_type == "s3": + if upload_result: result["files_uploaded"] = upload_result.files_uploaded result["total_bytes"] = upload_result.total_bytes result["destination"] = upload_result.destination diff --git a/serve/inferenceserver/api_server/object_storage.py b/serve/inferenceserver/api_server/object_storage.py index 6f5a80f04..1f6f104c0 100644 --- a/serve/inferenceserver/api_server/object_storage.py +++ b/serve/inferenceserver/api_server/object_storage.py @@ -160,25 +160,30 @@ class ObjectStorageError(Exception): class MSCObjectStorage(ObjectStorage): """ - Object storage implementation using NVIDIA Multi-Storage Client with Rust backend. + Object storage implementation using NVIDIA Multi-Storage Client with Rust backend for AWS S3 and Azure Blob Storage. MSC provides optimized parallel transfers and the Rust client bypasses Python's GIL for significantly improved I/O performance (up to 12x faster). Uses sync_from for efficient directory uploads with parallel transfers. - Credentials are picked up from environment variables: + Supports both AWS S3 and Azure Blob Storage. + + For S3, credentials are picked up from environment variables: - AWS_ACCESS_KEY_ID - AWS_SECRET_ACCESS_KEY - AWS_SESSION_TOKEN (optional) - AWS_DEFAULT_REGION + For Azure, credentials can be provided via connection string or account name/key. + See: https://nvidia.github.io/multi-storage-client/user_guide/rust.html """ def __init__( self, bucket: str, + storage_type: Literal["s3", "azure"] = "s3", region: str | None = None, access_key_id: str | None = None, secret_access_key: str | None = None, @@ -188,16 +193,22 @@ def __init__( max_concurrency: int = 16, multipart_chunksize: int = 8 * 1024 * 1024, # 8 MB use_rust_client: bool = False, - profile_name: str = "e2studio-s3", + profile_name: str | None = None, cloudfront_domain: str | None = None, cloudfront_key_pair_id: str | None = None, cloudfront_private_key: str | None = None, + # Azure-specific parameters + azure_connection_string: str | None = None, + azure_account_name: str | None = None, + azure_account_key: str | None = None, + azure_container_name: str | None = None, ): """ Initialize MSCObjectStorage with AWS credentials and configuration. Args: bucket: The S3 bucket name. + storage_type: Storage provider type, either "s3" or "azure". region: AWS region (e.g., 'us-east-1'). access_key_id: AWS access key ID (sets AWS_ACCESS_KEY_ID env var). secret_access_key: AWS secret access key (sets AWS_SECRET_ACCESS_KEY env var). @@ -211,21 +222,89 @@ def __init__( cloudfront_domain: CloudFront distribution domain for signed URLs. cloudfront_key_pair_id: CloudFront key pair ID for signed URLs. cloudfront_private_key: PEM private key content as string. + azure_connection_string: Azure connection string. + azure_account_name: Azure storage account name. + azure_account_key: Azure storage account key (optional for SAS token generation). + azure_container_name: Azure container name. """ + self.storage_type = storage_type self.bucket = bucket - self.region = region or os.environ.get("AWS_DEFAULT_REGION", "us-east-1") self.max_concurrency = max_concurrency self.multipart_chunksize = multipart_chunksize self.use_rust_client = use_rust_client - self.profile_name = profile_name - self.use_transfer_acceleration = use_transfer_acceleration + self.profile_name = profile_name or ( + "e2studio-s3" if storage_type == "s3" else "e2studio-azure" + ) + # Initialize endpoint_url as None to allow str | None type + self.endpoint_url: str | None = None + + # S3-specific configuration + if storage_type == "s3": + self.region = region or os.environ.get("AWS_DEFAULT_REGION", "us-east-1") + self.use_transfer_acceleration = use_transfer_acceleration + + # Use S3 Transfer Acceleration endpoint if enabled (and no custom endpoint provided) + if use_transfer_acceleration and not endpoint_url: + self.endpoint_url = f"https://{bucket}.s3-accelerate.amazonaws.com" + logger.info(f"S3 Transfer Acceleration enabled: {self.endpoint_url}") + else: + self.endpoint_url = endpoint_url + + # CloudFront configuration for signed URLs + self.cloudfront_domain = cloudfront_domain + self.cloudfront_key_pair_id = cloudfront_key_pair_id + self.cloudfront_private_key = cloudfront_private_key + + # Set credentials as environment variables - MSC picks these up automatically + if access_key_id: + os.environ["AWS_ACCESS_KEY_ID"] = access_key_id + if secret_access_key: + os.environ["AWS_SECRET_ACCESS_KEY"] = secret_access_key + if session_token: + os.environ["AWS_SESSION_TOKEN"] = session_token + if region: + os.environ["AWS_DEFAULT_REGION"] = region + + # Azure-specific configuration + elif storage_type == "azure": + # Connection string is mandatory for Azure + if not azure_connection_string: + raise ObjectStorageError( + "Azure connection string is required. " + "Please provide azure_connection_string." + ) + + self.azure_container_name = azure_container_name or bucket + self.azure_account_key = azure_account_key + + # Set Azure connection string + os.environ["AZURE_CONNECTION_STRING"] = azure_connection_string + + # Extract account name from connection string if not provided directly + if not azure_account_name: + # Connection string format: DefaultEndpointsProtocol=https;AccountName=...;AccountKey=... + for part in azure_connection_string.split(";"): + if part.startswith("AccountName="): + self.azure_account_name = part.split("=", 1)[1] + break + if not self.azure_account_name: + raise ObjectStorageError( + "Could not extract account name from connection string. " + "Please provide azure_account_name directly or ensure connection string contains AccountName." + ) + else: + self.azure_account_name = azure_account_name + else: + raise ValueError( + f"Unsupported storage_type: {storage_type}. Must be 's3' or 'azure'." + ) # Use S3 Transfer Acceleration endpoint if enabled (and no custom endpoint provided) if use_transfer_acceleration and not endpoint_url: self.endpoint_url = f"https://{bucket}.s3-accelerate.amazonaws.com" logger.info(f"S3 Transfer Acceleration enabled: {self.endpoint_url}") else: - self.endpoint_url = endpoint_url or "" + self.endpoint_url = endpoint_url # CloudFront configuration for signed URLs self.cloudfront_domain = cloudfront_domain @@ -253,44 +332,109 @@ def __init__( self._msc = msc - # Build the S3 storage provider options - s3_storage_provider_options: dict[str, Any] = { - "base_path": bucket, - "region_name": self.region, - "multipart_threshold": multipart_chunksize, - "multipart_chunksize": multipart_chunksize, - "max_concurrency": max_concurrency, - } - - # Add endpoint URL if provided (for S3-compatible services) - if endpoint_url: - s3_storage_provider_options["endpoint_url"] = endpoint_url - - # Enable Rust client for high-performance I/O - if use_rust_client: - s3_storage_provider_options["rust_client"] = { + # Build storage provider profile config based on storage_type + if storage_type == "s3": + # Build the S3 storage provider options + s3_storage_provider_options: dict[str, Any] = { + "base_path": bucket, + "region_name": self.region, + "multipart_threshold": multipart_chunksize, "multipart_chunksize": multipart_chunksize, "max_concurrency": max_concurrency, } - # Build the S3 profile config - s3_profile_config = { - "profiles": { - profile_name: { - "storage_provider": { - "type": "s3", - "options": s3_storage_provider_options, + # Add endpoint URL if provided (for S3-compatible services) + if self.endpoint_url: + s3_storage_provider_options["endpoint_url"] = self.endpoint_url + + # Enable Rust client for high-performance I/O + if use_rust_client: + s3_storage_provider_options["rust_client"] = { + "multipart_chunksize": multipart_chunksize, + "max_concurrency": max_concurrency, + } + + # Build the S3 profile config + profile_config = { + "profiles": { + self.profile_name: { + "storage_provider": { + "type": "s3", + "options": s3_storage_provider_options, + } } } } - } + elif storage_type == "azure": + # Build the Azure storage provider options + # Derive endpoint URL from connection string or account name + azure_endpoint_url = None + + # First, try to extract BlobEndpoint directly from connection string + if azure_connection_string: + for part in azure_connection_string.split(";"): + if part.startswith("BlobEndpoint="): + azure_endpoint_url = part.split("=", 1)[1].rstrip("/") + break + + # If not found, construct from AccountName and EndpointSuffix + if not azure_endpoint_url: + account_name = None + endpoint_suffix = "core.windows.net" # Default suffix + + # Extract from connection string + if azure_connection_string: + for part in azure_connection_string.split(";"): + if part.startswith("AccountName="): + account_name = part.split("=", 1)[1] + elif part.startswith("EndpointSuffix="): + endpoint_suffix = part.split("=", 1)[1] + + # Fall back to provided account_name if not in connection string + if not account_name: + account_name = self.azure_account_name + + if not account_name: + raise ObjectStorageError( + "Azure endpoint_url cannot be determined. " + "Please provide azure_connection_string (with AccountName or BlobEndpoint) " + "or azure_account_name." + ) + + azure_endpoint_url = f"https://{account_name}.blob.{endpoint_suffix}" + + azure_storage_provider_options = { + "base_path": self.azure_container_name, + "endpoint_url": azure_endpoint_url, + } + + # Build the Azure profile config with credentials provider + profile_config = { + "profiles": { + self.profile_name: { + "storage_provider": { + "type": "azure", + "options": azure_storage_provider_options, + } + } + } + } + + # Add Azure credentials provider if connection string is provided + if azure_connection_string: + profile_config["profiles"][self.profile_name][ + "credentials_provider" + ] = { + "type": "AzureCredentials", + "options": {"connection": "${AZURE_CONNECTION_STRING}"}, + } - # Initialize the S3 StorageClient (target for uploads) - s3_client_config = msc.StorageClientConfig.from_dict( - config_dict=s3_profile_config, - profile=profile_name, + # Initialize the StorageClient (target for uploads) + storage_client_config = msc.StorageClientConfig.from_dict( + config_dict=profile_config, + profile=self.profile_name, ) - self._s3_client = msc.StorageClient(config=s3_client_config) + self._storage_client = msc.StorageClient(config=storage_client_config) # Initialize the local filesystem StorageClient (source for uploads) local_profile_config = { @@ -312,12 +456,18 @@ def __init__( self._local_client = msc.StorageClient(config=local_client_config) rust_status = "enabled" if use_rust_client else "disabled" - accel_status = "enabled" if use_transfer_acceleration else "disabled" - logger.info( - f"MSCObjectStorage initialized: bucket={bucket}, region={self.region}, " - f"max_concurrency={max_concurrency}, rust_client={rust_status}, " - f"transfer_acceleration={accel_status}" - ) + if storage_type == "s3": + accel_status = "enabled" if use_transfer_acceleration else "disabled" + logger.info( + f"MSCObjectStorage initialized (S3): bucket={bucket}, region={self.region}, " + f"max_concurrency={max_concurrency}, rust_client={rust_status}, " + f"transfer_acceleration={accel_status}" + ) + else: + logger.info( + f"MSCObjectStorage initialized (Azure): container={self.azure_container_name}, " + f"max_concurrency={max_concurrency}, rust_client={rust_status}" + ) def upload_directory( self, @@ -327,13 +477,14 @@ def upload_directory( overwrite: bool = True, ) -> UploadResult: """ - Upload a local directory to S3 using Multi-Storage Client sync_from. + Upload a local directory to object storage using Multi-Storage Client sync_from. Uses MSC's sync_from for efficient parallel directory uploads. + Works with both S3 and Azure Blob Storage. Args: local_directory: Path to the local directory to upload. - remote_prefix: The S3 prefix where files will be uploaded. + remote_prefix: The storage prefix where files will be uploaded. recursive: If True, recursively upload all subdirectories. overwrite: If True, overwrite existing files. @@ -359,9 +510,14 @@ def upload_directory( total_bytes = sum(f.stat().st_size for f in files) + storage_prefix = ( + f"s3://{self.bucket}" + if self.storage_type == "s3" + else f"azure://{self.azure_container_name if self.storage_type == 'azure' else self.bucket}" + ) logger.info( f"[MSC] Syncing {len(files)} files ({total_bytes / (1024 * 1024):.2f} MB) " - f"from {local_directory} to s3://{self.bucket}/{remote_prefix}" + f"from {local_directory} to {storage_prefix}/{remote_prefix}" ) errors: list[str] = [] @@ -369,7 +525,7 @@ def upload_directory( try: # Use sync_from for efficient parallel directory upload - result = self._s3_client.sync_from( + result = self._storage_client.sync_from( source_client=self._local_client, source_path=source_path, target_path=f"/{remote_prefix}" if remote_prefix else "/", @@ -386,7 +542,15 @@ def upload_directory( elapsed_time = time.time() - start_time success = len(errors) == 0 - destination = f"s3://{self.bucket}/{remote_prefix}" + if self.storage_type == "s3": + destination = f"s3://{self.bucket}/{remote_prefix}" + else: + container = ( + self.azure_container_name + if self.storage_type == "azure" + else self.bucket + ) + destination = f"azure://{container}/{remote_prefix}" result = UploadResult( success=success, @@ -416,11 +580,11 @@ def upload_file( overwrite: bool = True, ) -> bool: """ - Upload a single file to S3 using Multi-Storage Client with Rust backend. + Upload a single file to object storage using Multi-Storage Client. Args: local_file: Path to the local file. - remote_key: The S3 key for the file. + remote_key: The storage key for the file. overwrite: If True, overwrite if exists. Returns: @@ -437,7 +601,7 @@ def upload_file( try: remote_key = f"/{remote_key.lstrip('/')}" - self._s3_client.upload_file(remote_key, str(local_path)) + self._storage_client.upload_file(remote_key, str(local_path)) return True except Exception as e: @@ -446,34 +610,37 @@ def upload_file( def file_exists(self, remote_key: str) -> bool: """ - Check if a file exists in S3 using MSC info() method. + Check if a file exists in object storage using MSC info() method. + Works with both S3 and Azure Blob Storage. Args: - remote_key: The S3 key to check. + remote_key: The storage key to check. Returns: True if the file exists, False otherwise. """ try: remote_path = f"/{remote_key.lstrip('/')}" - self._s3_client.info(remote_path) + self._storage_client.info(remote_path) return True except FileNotFoundError: return False def delete_file(self, remote_key: str) -> bool: """ - Delete a file from S3 using MSC delete() method. + Delete a file from object storage using MSC delete() method. + + Works with both S3 and Azure Blob Storage. Args: - remote_key: The S3 key to delete. + remote_key: The storage key to delete. Returns: True if successful, False otherwise. """ try: remote_path = f"/{remote_key.lstrip('/')}" - self._s3_client.delete(remote_path) + self._storage_client.delete(remote_path) return True except FileNotFoundError: logger.warning(f"File not found for deletion: {remote_key}") @@ -515,18 +682,30 @@ def _url_safe_b64(data: bytes) -> str: def generate_signed_url(self, remote_key: str, expires_in: int = 86400) -> str: """ - Generate a CloudFront signed URL for accessing a file. + Generate a signed URL for accessing a file. + + For S3, generates a CloudFront signed URL. + For Azure, generates a SAS (Shared Access Signature) token URL. Args: - remote_key: The S3 key/path to the file. Can include wildcards. + remote_key: The storage key/path to the file. Can include wildcards for S3. expires_in: Number of seconds until the URL expires (default: 86400). Returns: - A signed CloudFront URL string. + A signed URL string. Raises: - ObjectStorageError: If CloudFront configuration is missing. + ObjectStorageError: If required configuration is missing. """ + if self.storage_type == "s3": + return self._generate_cloudfront_signed_url(remote_key, expires_in) + elif self.storage_type == "azure": + return self._generate_azure_sas_url(remote_key, expires_in) + else: + raise ObjectStorageError(f"Unsupported storage_type: {self.storage_type}") + + def _generate_cloudfront_signed_url(self, remote_key: str, expires_in: int) -> str: + """Generate a CloudFront signed URL for S3.""" if not all( [ self.cloudfront_domain, @@ -576,7 +755,60 @@ def generate_signed_url(self, remote_key: str, expires_in: int = 86400) -> str: f"&Key-Pair-Id={self.cloudfront_key_pair_id}" ) - logger.debug(f"Generated signed URL for {remote_key}, expires in {expires_in}s") + logger.debug( + f"Generated CloudFront signed URL for {remote_key}, expires in {expires_in}s" + ) + return signed_url + + def _generate_azure_sas_url(self, remote_key: str, expires_in: int) -> str: + """Generate an Azure SAS (Shared Access Signature) URL.""" + if not self.azure_account_name or not self.azure_account_key: + raise ObjectStorageError( + "Azure account name and account key are required for signed URLs. " + "Please provide azure_account_name and azure_account_key." + ) + + try: + from azure.storage.blob import ( + ContainerSasPermissions, + generate_container_sas, + ) + except ImportError as e: + raise ImportError( + "azure-storage-blob is required for Azure signed URLs. " + "Install with: pip install azure-storage-blob" + ) from e + + container_name = ( + self.azure_container_name if self.storage_type == "azure" else self.bucket + ) + + # Define permissions (Read + List) + permissions = ContainerSasPermissions(read=True, list=True) + + # Set the duration + start_time = datetime.datetime.now(datetime.timezone.utc) + expiry_time = start_time + datetime.timedelta(seconds=expires_in) + + # Generate the SAS token + sas_token = generate_container_sas( + account_name=self.azure_account_name, + account_key=self.azure_account_key, + container_name=container_name, + permission=permissions, + expiry=expiry_time, + start=start_time, + ) + + # Construct the full URL with the prefix + # Remove leading slash from remote_key if present + prefix = remote_key.lstrip("/") + base_url = f"https://{self.azure_account_name}.blob.core.windows.net/{container_name}/{prefix}" + signed_url = f"{base_url}?{sas_token}" + + logger.debug( + f"Generated Azure SAS URL for {remote_key}, expires in {expires_in}s" + ) return signed_url diff --git a/serve/inferenceserver/requirements.txt b/serve/inferenceserver/requirements.txt index 117c0b6d0..e53074912 100644 --- a/serve/inferenceserver/requirements.txt +++ b/serve/inferenceserver/requirements.txt @@ -28,6 +28,11 @@ hydra-core>=1.3.0 # Cryptography for CloudFront signed URLs cryptography>=41.0.0 +# Multi-Storage Client with Azure support +multi-storage-client[azure-storage-blob] +# Azure Blob Storage for SAS token generation +azure-storage-blob>=12.19.0 + # Development dependencies pytest>=7.0.0 pytest-asyncio>=0.21.0 diff --git a/serve/inferenceserver/scripts/startup.sh b/serve/inferenceserver/scripts/startup.sh index 3a466b366..0d0e795d4 100755 --- a/serve/inferenceserver/scripts/startup.sh +++ b/serve/inferenceserver/scripts/startup.sh @@ -17,6 +17,15 @@ set -euo pipefail +# Set EARTH2STUDIO_MODEL_CACHE to use AZUREML_MODEL_DIR if available +if [ -n "${AZUREML_MODEL_DIR:-}" ]; then + echo "AZUREML_MODEL_DIR: $AZUREML_MODEL_DIR" + export EARTH2STUDIO_MODEL_CACHE="$AZUREML_MODEL_DIR/${EARTH2STUDIO_MODEL_SUBPATH:-e2s_fcn3_stormscope}" + echo "--------------------------------" + echo "EARTH2STUDIO_MODEL_CACHE: $EARTH2STUDIO_MODEL_CACHE" + ls -la $EARTH2STUDIO_MODEL_CACHE && echo "--------------------------------" +fi + cd /workspace/earth2studio-project/service/inferenceserver make start-redis make start-api-server diff --git a/uv.lock b/uv.lock index b6bf74a8e..4a777b726 100644 --- a/uv.lock +++ b/uv.lock @@ -1,5 +1,5 @@ version = 1 -revision = 3 +revision = 1 requires-python = ">=3.11" resolution-markers = [ "python_full_version >= '3.14' and sys_platform == 'linux'", @@ -16,9 +16,9 @@ resolution-markers = [ name = "absl-py" version = "2.4.0" source = { registry = "https://pypi.org/simple" } -sdist = { url = "https://files.pythonhosted.org/packages/64/c7/8de93764ad66968d19329a7e0c147a2bb3c7054c554d4a119111b8f9440f/absl_py-2.4.0.tar.gz", hash = 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"sha256:071652d6115ed432f5ce1d34c336c0adfd6a884660d1e9712a256d3d3bd4b14e", size = 10276 }, ] From 84ded7e34a1f8758784f19c23d7dc3c049ee7d61 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Mon, 23 Feb 2026 18:29:34 -0800 Subject: [PATCH 02/24] fixes --- .../inferenceserver/api_server/cpu_worker.py | 2 +- .../api_server/object_storage.py | 22 ------------------- 2 files changed, 1 insertion(+), 23 deletions(-) diff --git a/serve/inferenceserver/api_server/cpu_worker.py b/serve/inferenceserver/api_server/cpu_worker.py index a5021d52d..19fbd39a1 100644 --- a/serve/inferenceserver/api_server/cpu_worker.py +++ b/serve/inferenceserver/api_server/cpu_worker.py @@ -558,7 +558,7 @@ def process_object_storage_upload( config.object_storage.bucket or config.object_storage.storage_type == "azure" ): - from earth2studio_api_server.object_storage import ( + from api_server.object_storage import ( MSCObjectStorage, ObjectStorageError, ) diff --git a/serve/inferenceserver/api_server/object_storage.py b/serve/inferenceserver/api_server/object_storage.py index 1f6f104c0..db8730ee4 100644 --- a/serve/inferenceserver/api_server/object_storage.py +++ b/serve/inferenceserver/api_server/object_storage.py @@ -299,28 +299,6 @@ def __init__( f"Unsupported storage_type: {storage_type}. Must be 's3' or 'azure'." ) - # Use S3 Transfer Acceleration endpoint if enabled (and no custom endpoint provided) - if use_transfer_acceleration and not endpoint_url: - self.endpoint_url = f"https://{bucket}.s3-accelerate.amazonaws.com" - logger.info(f"S3 Transfer Acceleration enabled: {self.endpoint_url}") - else: - self.endpoint_url = endpoint_url - - # CloudFront configuration for signed URLs - self.cloudfront_domain = cloudfront_domain - self.cloudfront_key_pair_id = cloudfront_key_pair_id - self.cloudfront_private_key = cloudfront_private_key - - # Set credentials as environment variables - MSC picks these up automatically - if access_key_id: - os.environ["AWS_ACCESS_KEY_ID"] = access_key_id - if secret_access_key: - os.environ["AWS_SECRET_ACCESS_KEY"] = secret_access_key - if session_token: - os.environ["AWS_SESSION_TOKEN"] = session_token - if region: - os.environ["AWS_DEFAULT_REGION"] = region - # Import multi-storage-client try: import multistorageclient as msc From b91b7fd13e37e8407e463463bf5728b1a2bae481 Mon Sep 17 00:00:00 2001 From: Stefan Weissenberger Date: Tue, 24 Feb 2026 17:07:26 +0000 Subject: [PATCH 03/24] add Foundry workflows --- .../example_workflows/foundry_fcn3.py | 182 ++++++++ .../foundry_fcn3_stormscope_goes.py | 428 ++++++++++++++++++ 2 files changed, 610 insertions(+) create mode 100644 serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py create mode 100644 serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py new file mode 100644 index 000000000..0ba1f7548 --- /dev/null +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py @@ -0,0 +1,182 @@ +import logging +from collections.abc import Sequence +from datetime import datetime + +import numpy as np +import torch +import zarr + +from api_server.workflow import Earth2Workflow, workflow_registry +from earth2studio.data import PlanetaryComputerECMWFOpenDataIFS, fetch_data +from earth2studio.io import IOBackend, ZarrBackend +from earth2studio.models.px import FCN3 +from earth2studio.utils.coords import CoordSystem, map_coords, split_coords +from earth2studio.utils.time import to_time_array + +logging.basicConfig(level=logging.INFO) +logger = logging.getLogger("foundry_fcn3_workflow") + + +@workflow_registry.register +class FoundryFCN3Workflow(Earth2Workflow): + name = "foundry_fcn3_workflow" + description = "FCN3 ensemble workflow for Foundry" + + def __init__( + self, + device: str = "cuda", + init_seed: int | None = None, + ): + super().__init__() + + self.device = torch.device(device) + + self.fcn3 = self.load_fcn3() + self.rng = np.random.default_rng(init_seed) + + # TODO: Do not use data cache + self.data = PlanetaryComputerECMWFOpenDataIFS(verbose=False) + + def load_fcn3(self) -> FCN3: + logger.info("Loading FCN3") + # Assuming AZUREML_MODEL_DIR == EARTH2STUDIO_CACHE + package = FCN3.load_default_package() + fcn3 = FCN3.load_model(package) + fcn3.to(self.device) + fcn3.eval() + return fcn3 + + def get_seeds(self, n_seeds: int) -> list[int]: + seeds = self.rng.choice(2**32, size=n_seeds, replace=False) + return [int(s) for s in seeds] + + def validate_start_time(self, start_time: datetime) -> None: + if (start_time - datetime(1900, 1, 1)).total_seconds() % 21600 != 0: + raise ValueError(f"Start time needs to be 6-hour interval: {start_time}") + + def validate_samples( + self, n_samples: int, seeds: Sequence[int] | None + ) -> list[int]: + if seeds is None: + seeds = self.get_seeds(n_samples) + elif len(seeds) != n_samples: + logger.warning( + "Ignoring requested number of samples because it does not match number of seeds" + ) + return list(seeds) + + def validate_variables(self, variables: Sequence[str] | None) -> np.ndarray: + if variables is None: + variables = self.fcn3.variables + else: + unknown_variables = set(variables) - set(self.fcn3.variables) + if len(unknown_variables): + raise ValueError(f"Unknown variable(s) {', '.join(unknown_variables)}") + variables = np.array(variables) + return variables + + def setup_io( + self, io: IOBackend, output_coords: CoordSystem, seeds: Sequence[int] + ) -> None: + io.add_array( + {k: v for k, v in output_coords.items() if k != "variable"}, + output_coords["variable"], + ) + + # Storing seeds separately makes it easier to filer with Titiler + sample_coords = {"sample": output_coords["sample"]} + io.add_array(sample_coords, "seed", torch.tensor(seeds)) + + # Set attributes for automatic parsing of dimensions + io.root["lat"].standard_name = "latitude" + io.root["lat"].axis = "Y" + io.root["lon"].standard_name = "longitude" + io.root["lon"].axis = "X" + # io.root["time"].standard_name = "time" + # io.root["time"].axis = "T" + + # Planetary Computer does not like grid_mapping, so we skip adding it + + if isinstance(io, ZarrBackend): + zarr.consolidate_metadata(io.store) + + return io + + def get_fcn3_input(self, time: datetime) -> tuple[torch.Tensor, CoordSystem]: + x, coords = fetch_data( + self.data, + time=to_time_array([time]), + variable=self.fcn3.input_coords()["variable"], + device=self.device, + ) + return x, coords + + def __call__( + self, + io: IOBackend, + start_time: datetime = datetime(2025, 1, 1), + n_steps: int = 20, + n_samples: int = 16, + seeds: Sequence[int] | None = None, + variables: Sequence[str] | None = None, + ) -> None: + if isinstance(io, ZarrBackend): + io.chunks = { + "sample": 1, + "time": 1, + "variable": 1, + } + + self.validate_start_time(start_time) + lead_times = np.array([np.timedelta64(i * 6, "h") for i in range(n_steps + 1)]) + seeds = self.validate_samples(n_samples, seeds) + variables = self.validate_variables(variables) + + x_ori, coords_ori = self.get_fcn3_input(start_time) + + output_coords = CoordSystem( + { + "sample": np.arange(len(seeds)), + # Planetary Computer does not like separate 'lead_time' + "time": to_time_array([start_time]) + lead_times, + "variable": variables, + "lat": np.linspace(90.0, -90.0, 721), + "lon": np.linspace(0, 360, 1440, endpoint=False), + } + ) + self.setup_io(io, output_coords, seeds) + + logger.info("Starting inference") + for si, seed in enumerate(seeds): + self.fcn3.set_rng(seed=seed) + iterator = self.fcn3.create_iterator(x_ori.clone(), coords_ori.copy()) + for ii, (x, coords) in enumerate(iterator): + logger.info( + "Processing FCN3 (seed=%d) step %d/%d", + seed, + ii + 1, + len(lead_times), + ) + + x_out, coords_out = map_coords( + x, coords, CoordSystem({"variable": output_coords["variable"]}) + ) + # Add sample dimension + x_out = x_out.unsqueeze(0) + coords_out["sample"] = np.array([si]) + coords_out.move_to_end("sample", last=False) + # Combine time and lead_time + lead_time_dim = list(coords_out).index("lead_time") + x_out = x_out.squeeze(lead_time_dim) + coords_out["time"] = coords_out["time"] + coords_out["lead_time"] + del coords_out["lead_time"] + # Write to disk + io.write(*split_coords(x_out, coords_out)) + + if ii == n_steps: + break + + # Planetary Computer does not like the original time format + ref_time = start_time.isoformat().replace("T", " ") + io["time"].units = f"hours since {ref_time}" + io["time"][:] = np.arange(len(io["time"])) * 6 diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py new file mode 100644 index 000000000..a0e5d5fb8 --- /dev/null +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py @@ -0,0 +1,428 @@ +import logging +from collections import OrderedDict +from collections.abc import Sequence +from datetime import datetime, timedelta + +import numpy as np +import torch +import xarray as xr +import zarr + +from api_server.workflow import Earth2Workflow, workflow_registry +from earth2studio.data import ( + GOES, + InferenceOutputSource, + PlanetaryComputerECMWFOpenDataIFS, + PlanetaryComputerGOES, + fetch_data, +) +from earth2studio.io import IOBackend, XarrayBackend, ZarrBackend +from earth2studio.models.dx import DerivedSurfacePressure +from earth2studio.models.px import FCN3, DiagnosticWrapper, InterpModAFNO +from earth2studio.models.px.stormscope import ( + StormScopeBase, + StormScopeGOES, +) +from earth2studio.utils.coords import CoordSystem, map_coords, split_coords +from earth2studio.utils.time import to_time_array + +logger = logging.getLogger("foundry_fcn3_stormscope_goes_workflow") +logger.setLevel(logging.INFO) + +GOES_MODEL_NAME = "6km_60min_natten_cos_zenith_input_eoe_v2" + + +@workflow_registry.register +class FoundryFCN3StormScopeGOESWorkflow(Earth2Workflow): + name = "foundry_fcn3_stormscope_goes_workflow" + description = "FCN3+StormScopeGOES ensemble workflow for Foundry" + + def __init__( + self, + device: str = "cuda", + init_seed: int = 1234, + ): + super().__init__() + + self.device = torch.device(device) + + self.fcn3_interp = self.load_fcn3_interp() + self.stormscope = self.load_stormscope() + self.rng = np.random.default_rng(init_seed) + + # TODO: Do not use data cache + self.data_fcn3 = PlanetaryComputerECMWFOpenDataIFS(verbose=False) + + scan_mode = "C" + # TODO: Do not use data cache + self.data_stormscope = { + satellite: PlanetaryComputerGOES( + satellite=satellite, scan_mode=scan_mode, verbose=False + ) + for satellite in ["goes16", "goes19"] + } + + # GOES-16 and GOES19 have the same grid + goes_lat, goes_lon = GOES.grid(satellite="goes16", scan_mode=scan_mode) + coords_out = self.fcn3_interp.output_coords(self.fcn3_interp.input_coords()) + self.stormscope.build_input_interpolator(goes_lat, goes_lon) + self.stormscope.build_conditioning_interpolator( + coords_out["lat"], coords_out["lon"] + ) + + def load_fcn3_interp(self) -> InterpModAFNO: + logger.info("Loading FCN3") + # Assuming AZUREML_MODEL_DIR == EARTH2STUDIO_CACHE + package = FCN3.load_default_package() + fcn3 = FCN3.load_model(package) + + # Surface pressure interpolation + orography_fn = package.resolve("orography.nc") + with xr.open_dataset(orography_fn) as ds: + z_surface = torch.as_tensor(ds["Z"][0].values) + z_surf_coords = OrderedDict({d: fcn3.input_coords()[d] for d in ["lat", "lon"]}) + sp_model = DerivedSurfacePressure( + p_levels=[50, 100, 150, 200, 250, 300, 400, 500, 600, 700, 850, 925, 1000], + surface_geopotential=z_surface, + surface_geopotential_coords=z_surf_coords, + ) + + # Bundle surface pressure with FCN3 + fcn3_sp = DiagnosticWrapper(px_model=fcn3, dx_model=sp_model) + + # Add temporal interpolation to 1 hour + fcn3_interp = InterpModAFNO.from_pretrained() + fcn3_interp.px_model = fcn3_sp + fcn3_interp.to(device=self.device) + fcn3_interp.eval() + return fcn3_interp + + def load_stormscope(self) -> StormScopeGOES: + logger.info("Loading StormScope") + package = StormScopeBase.load_default_package() + stormscope = StormScopeGOES.load_model( + package=package, + conditioning_data_source=None, # set later + model_name=GOES_MODEL_NAME, + ) + stormscope.to(self.device) + stormscope.eval() + return stormscope + + def get_seeds(self, n_seeds: int) -> list[int]: + seeds = self.rng.choice(2**32, size=n_seeds, replace=False) + return [int(s) for s in seeds] + + def validate_start_times( + self, time_stormscope: datetime, time_fcn3: datetime + ) -> None: + ref = datetime(1900, 1, 1) + if (time_stormscope - ref).total_seconds() % (1 * 60 * 60) != 0: + raise ValueError( + f"Start time for StormScope must be 6-hour interval: {time_stormscope}" + ) + if (time_fcn3 - ref).total_seconds() % (6 * 60 * 60) != 0: + raise ValueError( + f"Start time for FCN3 must be 6-hour interval: {time_fcn3}" + ) + if time_stormscope < time_fcn3: + raise ValueError( + "Start time for StormScope cannot preceed start time for FCN3" + ) + if time_stormscope - time_fcn3 > timedelta(hours=12): + logger.warning( + "Start times for StormScope and FCN3 should not be more than 12 hours apart but got '%s' and '%s'", + time_stormscope, + time_fcn3, + ) + + def validate_samples( + self, n_samples: int, seeds: Sequence[int] | None + ) -> list[int]: + if not seeds: + return self.get_seeds(n_samples) + if len(seeds) != n_samples: + logger.warning( + "Ignoring requested number of samples because it does not match number of seeds" + ) + return list(seeds) + + def validate_variables(self, variables: Sequence[str] | None) -> np.ndarray: + if variables is None: + variables = self.stormscope.variables + else: + unknown_variables = set(variables) - set(self.stormscope.variables) + if len(unknown_variables): + raise ValueError(f"Unknown variable(s) {', '.join(unknown_variables)}") + variables = np.array(variables) + return variables + + def setup_io( + self, + io: IOBackend, + output_coords: CoordSystem, + seeds_fcn3: Sequence[int], + seeds_stormscope: Sequence[int], + ) -> None: + io.add_array( + {k: v for k, v in output_coords.items() if k != "variable"}, + output_coords["variable"], + ) + + # Storing seeds separately makes it easier to filer with Titiler + sample_coords = {"sample": output_coords["sample"]} + n_stormscope_per_fcn3 = len(seeds_stormscope) // len(seeds_fcn3) + tiled_seeds_fcn3 = np.repeat(seeds_fcn3, n_stormscope_per_fcn3) + io.add_array(sample_coords, "seed_fcn3", torch.tensor(tiled_seeds_fcn3)) + io.add_array(sample_coords, "seed_stormscope", torch.tensor(seeds_stormscope)) + + # Set attributes for automatic parsing of dimensions + io.root["lat"].standard_name = "latitude" + io.root["lat"].axis = "Y" + io.root["lon"].standard_name = "longitude" + io.root["lon"].axis = "X" + # io.root["time"].standard_name = "time" + # io.root["time"].axis = "T" + + # Planetary Computer does not like grid_mapping, so we skip adding it + + if isinstance(io, ZarrBackend): + zarr.consolidate_metadata(io.store) + + return io + + def get_fcn3_input(self, time: datetime) -> tuple[torch.Tensor, CoordSystem]: + x, coords = fetch_data( + self.data_fcn3, + time=to_time_array([time]), + variable=self.fcn3_interp.input_coords()["variable"], + device=self.device, + ) + return x, coords + + def get_stormscope_input(self, time: datetime) -> tuple[torch.Tensor, CoordSystem]: + coords_in = self.stormscope.input_coords() + if time < datetime(2025, 4, 7): + data = self.data_stormscope["goes16"] + else: + data = self.data_stormscope["goes19"] + x, coords = fetch_data( + data, + time=to_time_array([time]), + variable=coords_in["variable"], + lead_time=coords_in["lead_time"], + device=self.device, + ) + + batch_size = 1 + if x.dim() == 5: + x = x.unsqueeze(0).repeat(batch_size, 1, 1, 1, 1, 1) + coords["batch"] = np.arange(batch_size) + coords.move_to_end("batch", last=False) + + x, coords = self.stormscope.prep_input(x, coords) + x = torch.where(self.stormscope.valid_mask, x, torch.nan) + + return x, coords + + def run_fcn3( + self, + io: IOBackend, + x: torch.Tensor, + coords_x: CoordSystem, + seed_fcn3: int, + start_time_stormscope: datetime, + lead_times: np.ndarray, + ) -> None: + # Create z500 conditioning with FCN3 + coords_in = self.stormscope.input_coords() + start_time_stormscope = to_time_array([start_time_stormscope]) + variables = self.stormscope.conditioning_variables + # Start time and lead times are shifted to StormScope start time + output_coords = { + "time": start_time_stormscope, + "lead_time": lead_times, + "variable": variables, + "y": coords_in["y"], + "x": coords_in["x"], + } + io.add_array( + {k: v for k, v in output_coords.items() if k != "variable"}, variables + ) + + model_gap = int( + (start_time_stormscope - coords_x["time"]) / np.timedelta64(1, "h") + ) + + self.fcn3_interp.px_model.px_model.set_rng(seed=seed_fcn3) + iterator = self.fcn3_interp.create_iterator(x.clone(), coords_x.copy()) + + total_steps = model_gap + len(lead_times) + for i, (x, coords_x) in enumerate(iterator): + logger.info( + "Processing FCN3 (seed_fcn3=%d) step %d/%d", + seed_fcn3, + i + 1, + total_steps, + ) + + if i < model_gap: + # Skip initial steps leading up to StormScope start time + continue + + x, coords_x = map_coords(x, coords_x, OrderedDict({"variable": variables})) + x, coords_x = self.stormscope.prep_input(x, coords_x, conditioning=True) + coords_x["time"] = start_time_stormscope + coords_x["lead_time"] = coords_x["lead_time"] - np.timedelta64( + model_gap, "h" + ) + io.write(*split_coords(x, coords_x)) + + if (i + 1) == total_steps: + break + + def run_stormscope( + self, + io: IOBackend, + y: torch.Tensor, + coords_y: CoordSystem, + sample: int, + seed_fcn3: int, + seed_stormscope: int, + lead_times: np.ndarray, + variables: np.ndarray, + ) -> None: + def prep_output( + y_pred: torch.Tensor, coords_pred: CoordSystem + ) -> tuple[torch.Tensor, CoordSystem]: + y_out, coords_out = map_coords( + y_pred, coords_pred, CoordSystem({"variable": variables}) + ) + del coords_out["batch"] + # Reuse batch dimension as sample dimension (squeeze/unsqueeze) + coords_out["sample"] = np.array([sample]) + coords_out.move_to_end("sample", last=False) + # Combine time and lead_time + lead_time_dim = list(coords_out).index("lead_time") + y_out = y_out.squeeze(lead_time_dim) + coords_out["time"] = coords_out["time"] + coords_out["lead_time"] + del coords_out["lead_time"] + # Rename x, y to lon, lat + mp = {"x": "lon", "y": "lat"} + coords_out = CoordSystem({mp.get(k, k): v for k, v in coords_out.items()}) + return y_out, coords_out + + logger.info( + "Processing StormScope (seed_fcn3=%d, seed_stormscope=%d) step 1/%d", + seed_fcn3, + seed_stormscope, + len(lead_times), + ) + + # Store initial GOES data (identical across seeds) + y_out, coords_out = prep_output(y, coords_y) + io.write(*split_coords(y_out, coords_out)) + + # Cannot use seeded Generator before torch==2.10 + # Use self.stormscope.sampler_args["randn_like"] once updated + torch.manual_seed(seed_stormscope) + + for ii in range(1, len(lead_times)): + y_pred, coords_pred = self.stormscope(y, coords_y) + logger.info( + "Processing StormScope (seed_fcn3=%d, seed_stormscope=%d) step %d/%d", + seed_fcn3, + seed_stormscope, + ii + 1, + len(lead_times), + ) + + y_out, coords_out = prep_output(y_pred, coords_pred) + io.write(*split_coords(y_out, coords_out)) + + if ii == (len(lead_times) - 1): + break + + y, coords_y = self.stormscope.next_input(y_pred, coords_pred, y, coords_y) + + def __call__( + self, + io: IOBackend, + start_time_fcn3: datetime = datetime(2025, 1, 1, 18), + start_time_stormscope: datetime = datetime(2025, 1, 1, 18), + n_steps: int = 12, + n_samples_fcn3: int = 4, + n_samples_stormscope: int = 16, + seeds_fcn3: Sequence[int] | None = None, + seeds_stormscope: Sequence[int] | None = None, + variables: Sequence[str] | None = None, + ) -> None: + if isinstance(io, ZarrBackend): + io.chunks = { + "sample": 1, + "time": 1, + "variable": 1, + } + + self.validate_start_times(start_time_stormscope, start_time_fcn3) + lead_times = np.array([np.timedelta64(i, "h") for i in range(n_steps + 1)]) + # Different StormScope seed for every trajectory + if n_samples_stormscope % n_samples_fcn3 != 0: + raise ValueError( + "'n_samples_stormscope' must be divisible by 'n_samples_fcn3'" + ) + seeds_fcn3 = self.validate_samples(n_samples_fcn3, seeds_fcn3) + seeds_stormscope = self.validate_samples(n_samples_stormscope, seeds_stormscope) + n_stormscope_per_fcn3 = len(seeds_stormscope) // len(seeds_fcn3) + variables = self.validate_variables(variables) + + x_ori, coords_x_ori = self.get_fcn3_input(start_time_fcn3) + y_ori, coords_y_ori = self.get_stormscope_input(start_time_stormscope) + + coords_out = self.stormscope.output_coords(self.stormscope.input_coords()) + output_coords = { + "sample": np.arange(len(seeds_stormscope)), + # Planetary Computer does not like separate 'lead_time' + "time": to_time_array([start_time_stormscope]) + lead_times, + "variable": variables, + "lat": coords_out["y"], + "lon": coords_out["x"], + } + self.setup_io(io, output_coords, seeds_fcn3, seeds_stormscope) + + sample = 0 + for seed_fcn3 in seeds_fcn3: + # Generate FCN3 conditioning (z500) + logger.info("Starting FCN3 inference") + io_fcn3 = XarrayBackend() + self.run_fcn3( + io=io_fcn3, + x=x_ori.clone(), + coords_x=coords_x_ori.copy(), + seed_fcn3=seed_fcn3, + start_time_stormscope=start_time_stormscope, + lead_times=lead_times, + ) + self.stormscope.conditioning_data_source = InferenceOutputSource( + io_fcn3.root + ) + + # Run StormScope forecast conditioned on FCN3 + logger.info("Starting StormScope inference") + for _ in range(n_stormscope_per_fcn3): + self.run_stormscope( + io=io, + y=y_ori.clone(), + coords_y=coords_y_ori.copy(), + sample=sample, + seed_fcn3=seed_fcn3, + seed_stormscope=seeds_stormscope[sample], + lead_times=lead_times, + variables=variables, + ) + sample += 1 + + # Planetary Computer does not like the original time format + ref_time = start_time_stormscope.isoformat().replace("T", " ") + io["time"].units = f"hours since {ref_time}" + io["time"][:] = np.arange(len(io["time"])) From a36b50bd941599898a4c5258fafa70d7c205a659 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Tue, 24 Feb 2026 13:17:24 -0800 Subject: [PATCH 04/24] fixes to get the foundry workflows to run --- .pre-commit-config.yaml | 2 +- serve/Dockerfile | 1 - .../api_server/example_workflows/foundry_fcn3.py | 4 ++-- .../example_workflows/foundry_fcn3_stormscope_goes.py | 8 +++++--- serve/inferenceserver/api_server/workflow/e2workflow.py | 4 ++++ serve/inferenceserver/scripts/startup.sh | 2 +- 6 files changed, 13 insertions(+), 8 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 0af7291f5..5624a254f 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -58,7 +58,7 @@ repos: rev: 1.7.0 hooks: - id: interrogate - exclude: ^(setup.py|test/|earth2studio/models/nn/) + exclude: ^(setup.py|test/|earth2studio/models/nn/|serve/inferenceserver/api_server/example_workflows/) args: [--config=pyproject.toml] - repo: https://github.com/igorshubovych/markdownlint-cli diff --git a/serve/Dockerfile b/serve/Dockerfile index d5503e53e..e8fbaf74a 100644 --- a/serve/Dockerfile +++ b/serve/Dockerfile @@ -35,7 +35,6 @@ RUN pip uninstall -y torch-harmonics && \ COPY serve /workspace/earth2studio-project/serve RUN cd / && mkdir /workspace/earth2studio-project/examples && ln -s /outputs /workspace/earth2studio-project/examples/outputs RUN apt-get update && apt-get install -y redis-server && \ - curl -LsSf https://astral.sh/uv/install.sh | sh && source $HOME/.local/bin/env && \ cd /workspace/earth2studio-project && \ uv pip install --system --break-system-packages -r serve/inferenceserver/requirements.txt diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py index 0ba1f7548..0e7cb8c17 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py @@ -85,7 +85,7 @@ def setup_io( # Storing seeds separately makes it easier to filer with Titiler sample_coords = {"sample": output_coords["sample"]} - io.add_array(sample_coords, "seed", torch.tensor(seeds)) + io.add_array(sample_coords, "seed", data=torch.tensor(seeds)) # Set attributes for automatic parsing of dimensions io.root["lat"].standard_name = "latitude" @@ -179,4 +179,4 @@ def __call__( # Planetary Computer does not like the original time format ref_time = start_time.isoformat().replace("T", " ") io["time"].units = f"hours since {ref_time}" - io["time"][:] = np.arange(len(io["time"])) * 6 + io["time"][:] = np.arange(io["time"].shape[0]) * 6 diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py index a0e5d5fb8..3ad47b2fe 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py @@ -173,8 +173,10 @@ def setup_io( sample_coords = {"sample": output_coords["sample"]} n_stormscope_per_fcn3 = len(seeds_stormscope) // len(seeds_fcn3) tiled_seeds_fcn3 = np.repeat(seeds_fcn3, n_stormscope_per_fcn3) - io.add_array(sample_coords, "seed_fcn3", torch.tensor(tiled_seeds_fcn3)) - io.add_array(sample_coords, "seed_stormscope", torch.tensor(seeds_stormscope)) + io.add_array(sample_coords, "seed_fcn3", data=torch.tensor(tiled_seeds_fcn3)) + io.add_array( + sample_coords, "seed_stormscope", data=torch.tensor(seeds_stormscope) + ) # Set attributes for automatic parsing of dimensions io.root["lat"].standard_name = "latitude" @@ -425,4 +427,4 @@ def __call__( # Planetary Computer does not like the original time format ref_time = start_time_stormscope.isoformat().replace("T", " ") io["time"].units = f"hours since {ref_time}" - io["time"][:] = np.arange(len(io["time"])) + io["time"][:] = np.arange(io["time"].shape[0]) diff --git a/serve/inferenceserver/api_server/workflow/e2workflow.py b/serve/inferenceserver/api_server/workflow/e2workflow.py index 56973ed63..55af4fbb6 100644 --- a/serve/inferenceserver/api_server/workflow/e2workflow.py +++ b/serve/inferenceserver/api_server/workflow/e2workflow.py @@ -247,3 +247,7 @@ def write( def __getattr__(self, name: str) -> Any: """Allow passthrough of unwrapped attributes.""" return getattr(self.io, name) + + def __getitem__(self, key: str) -> Any: + """Allow subscripting to access underlying io object.""" + return self.io[key] diff --git a/serve/inferenceserver/scripts/startup.sh b/serve/inferenceserver/scripts/startup.sh index 0d0e795d4..5ba90f71f 100755 --- a/serve/inferenceserver/scripts/startup.sh +++ b/serve/inferenceserver/scripts/startup.sh @@ -26,7 +26,7 @@ if [ -n "${AZUREML_MODEL_DIR:-}" ]; then ls -la $EARTH2STUDIO_MODEL_CACHE && echo "--------------------------------" fi -cd /workspace/earth2studio-project/service/inferenceserver +cd /workspace/earth2studio-project/serve/inferenceserver make start-redis make start-api-server sleep infinity From fe8217e4585de0e64d5fa9ac78a7143795118b01 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Tue, 24 Feb 2026 14:55:50 -0800 Subject: [PATCH 05/24] fix config not being read --- serve/inferenceserver/api_server/config.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/serve/inferenceserver/api_server/config.py b/serve/inferenceserver/api_server/config.py index 9615e3f10..ef970e568 100644 --- a/serve/inferenceserver/api_server/config.py +++ b/serve/inferenceserver/api_server/config.py @@ -171,7 +171,7 @@ class ConfigManager: """ _instance: Optional["ConfigManager"] = None - _config: AppConfig = AppConfig() + _config: AppConfig | None = None _workflow_config: dict[str, Any] = {} def __new__(cls) -> "ConfigManager": @@ -432,6 +432,9 @@ def config(self) -> AppConfig: """Get the current configuration""" if self._config is None: self._initialize_config() + # After initialization, _config should never be None + if self._config is None: + raise RuntimeError("Configuration was not initialized") return self._config def get_redis_url(self) -> str: From 852665dcec3fc1baedbdd907335f7df7680acf64 Mon Sep 17 00:00:00 2001 From: Stefan Weissenberger Date: Wed, 25 Feb 2026 16:08:22 +0000 Subject: [PATCH 06/24] only reformat time when NetCDF4 --- .../example_workflows/foundry_fcn3.py | 29 ++++++++-------- .../foundry_fcn3_stormscope_goes.py | 33 ++++++++++--------- 2 files changed, 33 insertions(+), 29 deletions(-) diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py index 0ba1f7548..293bae096 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py @@ -8,7 +8,7 @@ from api_server.workflow import Earth2Workflow, workflow_registry from earth2studio.data import PlanetaryComputerECMWFOpenDataIFS, fetch_data -from earth2studio.io import IOBackend, ZarrBackend +from earth2studio.io import IOBackend, NetCDF4Backend, ZarrBackend from earth2studio.models.px import FCN3 from earth2studio.utils.coords import CoordSystem, map_coords, split_coords from earth2studio.utils.time import to_time_array @@ -78,6 +78,13 @@ def validate_variables(self, variables: Sequence[str] | None) -> np.ndarray: def setup_io( self, io: IOBackend, output_coords: CoordSystem, seeds: Sequence[int] ) -> None: + if isinstance(io, ZarrBackend): + io.chunks = { + "sample": 1, + "time": 1, + "variable": 1, + } + io.add_array( {k: v for k, v in output_coords.items() if k != "variable"}, output_coords["variable"], @@ -85,7 +92,7 @@ def setup_io( # Storing seeds separately makes it easier to filer with Titiler sample_coords = {"sample": output_coords["sample"]} - io.add_array(sample_coords, "seed", torch.tensor(seeds)) + io.add_array(sample_coords, "seed", data=torch.tensor(seeds)) # Set attributes for automatic parsing of dimensions io.root["lat"].standard_name = "latitude" @@ -100,6 +107,12 @@ def setup_io( if isinstance(io, ZarrBackend): zarr.consolidate_metadata(io.store) + if isinstance(io, NetCDF4Backend): + # Planetary Computer does not like the original time format + ref_time = np.datetime_as_string(output_coords["time"][0], unit="s") + io["time"].units = f"hours since {ref_time.replace('T', ' ')}" + io["time"][:] = np.arange(len(io["time"])) * 6 + return io def get_fcn3_input(self, time: datetime) -> tuple[torch.Tensor, CoordSystem]: @@ -120,13 +133,6 @@ def __call__( seeds: Sequence[int] | None = None, variables: Sequence[str] | None = None, ) -> None: - if isinstance(io, ZarrBackend): - io.chunks = { - "sample": 1, - "time": 1, - "variable": 1, - } - self.validate_start_time(start_time) lead_times = np.array([np.timedelta64(i * 6, "h") for i in range(n_steps + 1)]) seeds = self.validate_samples(n_samples, seeds) @@ -175,8 +181,3 @@ def __call__( if ii == n_steps: break - - # Planetary Computer does not like the original time format - ref_time = start_time.isoformat().replace("T", " ") - io["time"].units = f"hours since {ref_time}" - io["time"][:] = np.arange(len(io["time"])) * 6 diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py index a0e5d5fb8..da08694b2 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py @@ -16,7 +16,7 @@ PlanetaryComputerGOES, fetch_data, ) -from earth2studio.io import IOBackend, XarrayBackend, ZarrBackend +from earth2studio.io import IOBackend, NetCDF4Backend, XarrayBackend, ZarrBackend from earth2studio.models.dx import DerivedSurfacePressure from earth2studio.models.px import FCN3, DiagnosticWrapper, InterpModAFNO from earth2studio.models.px.stormscope import ( @@ -164,6 +164,13 @@ def setup_io( seeds_fcn3: Sequence[int], seeds_stormscope: Sequence[int], ) -> None: + if isinstance(io, ZarrBackend): + io.chunks = { + "sample": 1, + "time": 1, + "variable": 1, + } + io.add_array( {k: v for k, v in output_coords.items() if k != "variable"}, output_coords["variable"], @@ -173,8 +180,10 @@ def setup_io( sample_coords = {"sample": output_coords["sample"]} n_stormscope_per_fcn3 = len(seeds_stormscope) // len(seeds_fcn3) tiled_seeds_fcn3 = np.repeat(seeds_fcn3, n_stormscope_per_fcn3) - io.add_array(sample_coords, "seed_fcn3", torch.tensor(tiled_seeds_fcn3)) - io.add_array(sample_coords, "seed_stormscope", torch.tensor(seeds_stormscope)) + io.add_array(sample_coords, "seed_fcn3", data=torch.tensor(tiled_seeds_fcn3)) + io.add_array( + sample_coords, "seed_stormscope", data=torch.tensor(seeds_stormscope) + ) # Set attributes for automatic parsing of dimensions io.root["lat"].standard_name = "latitude" @@ -189,6 +198,12 @@ def setup_io( if isinstance(io, ZarrBackend): zarr.consolidate_metadata(io.store) + if isinstance(io, NetCDF4Backend): + # Planetary Computer does not like the original time format + ref_time = np.datetime_as_string(output_coords["time"][0], unit="s") + io["time"].units = f"hours since {ref_time.replace('T', ' ')}" + io["time"][:] = np.arange(len(io["time"])) + return io def get_fcn3_input(self, time: datetime) -> tuple[torch.Tensor, CoordSystem]: @@ -357,13 +372,6 @@ def __call__( seeds_stormscope: Sequence[int] | None = None, variables: Sequence[str] | None = None, ) -> None: - if isinstance(io, ZarrBackend): - io.chunks = { - "sample": 1, - "time": 1, - "variable": 1, - } - self.validate_start_times(start_time_stormscope, start_time_fcn3) lead_times = np.array([np.timedelta64(i, "h") for i in range(n_steps + 1)]) # Different StormScope seed for every trajectory @@ -421,8 +429,3 @@ def __call__( variables=variables, ) sample += 1 - - # Planetary Computer does not like the original time format - ref_time = start_time_stormscope.isoformat().replace("T", " ") - io["time"].units = f"hours since {ref_time}" - io["time"][:] = np.arange(len(io["time"])) From 426cec92b47435c033a5495a5849cbe47bd1f4e4 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Wed, 25 Feb 2026 11:15:29 -0800 Subject: [PATCH 07/24] cleanup readme for object storage --- .../inferenceserver/README_object_storage.md | 221 +----------------- 1 file changed, 9 insertions(+), 212 deletions(-) diff --git a/serve/inferenceserver/README_object_storage.md b/serve/inferenceserver/README_object_storage.md index 08349e0a4..acf41b088 100644 --- a/serve/inferenceserver/README_object_storage.md +++ b/serve/inferenceserver/README_object_storage.md @@ -27,60 +27,20 @@ Before enabling object storage, you need to set up the following AWS resources: ### 1. S3 Bucket -Create an S3 bucket to store workflow results: - -```bash -aws s3 mb s3://your-bucket-name --region us-east-1 -``` - +Create an S3 bucket to store workflow results. **Must for performance**: Enable S3 Transfer Acceleration for faster uploads: -```bash -aws s3api put-bucket-accelerate-configuration \ - --bucket your-bucket-name \ - --accelerate-configuration Status=Enabled -``` - ### 2. CloudFront Distribution -Create a CloudFront distribution to serve content from your S3 bucket: - -1. Go to AWS CloudFront Console → Create Distribution -2. Set Origin Domain to your S3 bucket (`your-bucket-name.s3.amazonaws.com`) -3. Set Origin Access to "Origin access control settings (recommended)" -4. Create a new Origin Access Control (OAC) -5. Update the S3 bucket policy to allow CloudFront access (AWS will provide the policy) +Create a CloudFront distribution to serve content from your S3 bucket. ### 3. CloudFront Key Pair for Signed URLs -To generate signed URLs, you need a CloudFront key pair: - -1. Go to AWS CloudFront Console → Key Management → Public Keys -2. Create a new public key by uploading a public key you generated: - -```bash -# Generate a private key -openssl genrsa -out cloudfront-private-key.pem 2048 - -# Extract the public key -openssl rsa -in cloudfront-private-key.pem -pubout -out cloudfront-public-key.pem -``` - -Then: - -1. Upload `cloudfront-public-key.pem` to CloudFront -2. Create a Key Group containing your public key -3. Associate the Key Group with your CloudFront distribution's behavior settings (Restrict Viewer -Access → Yes, Trusted Key Groups) -4. Note the **Key Pair ID** (e.g., `KUCQGLNFR6UH1`) -5. Keep `cloudfront-private-key.pem` secure - this is used by the server to sign URLs +To generate signed URLs, you need a CloudFront key pair. ### 4. IAM Credentials -Create IAM credentials with permissions to upload to S3. See [Creating IAM -users](https://docs.aws.amazon.com/IAM/latest/UserGuide/id_users_create.html) for -detailed instructions. The credentials need `s3:PutObject`, `s3:GetObject`, -`s3:DeleteObject`, and `s3:ListBucket` permissions on your bucket. +Create IAM credentials with permissions to upload to S3. ## Azure Prerequisites @@ -88,50 +48,20 @@ Before enabling Azure Blob Storage, you need to set up the following Azure resou ### 1. Azure Storage Account -Create an Azure Storage Account: - -1. Go to Azure Portal → Storage accounts → Create -2. Choose a unique storage account name -3. Select your resource group and region -4. Choose performance tier (Standard recommended) -5. Note the **Storage account name** (e.g., `mystorageaccount`) +Create an Azure Storage Account. ### 2. Storage Container -Create a blob container in your storage account: - -1. Go to your Storage Account → Containers -2. Click "+ Container" -3. Choose a container name (e.g., `workflow-results`) -4. Set Public access level to "Private" (recommended for security) +Create a blob container in your storage account. -### 3. Connection String or Account Key - -You'll need either: - -#### Option A: Connection String (Recommended) - -1. Go to Storage Account → Access keys -2. Click "Show" next to a key -3. Copy the **Connection string** (format: - `DefaultEndpointsProtocol=https;AccountName=...;AccountKey=...;EndpointSuffix=core.windows.net`) - -#### Option B: Account Name and Key - -1. Go to Storage Account → Access keys -2. Note the **Storage account name** -3. Click "Show" next to a key and copy the **Account key** +### 3. Connection String, Account Key +You will need a connection string to write into the container. The account key is required for generating SAS (Shared Access Signature) signed URLs. ### 4. Permissions -Ensure your Azure credentials have the following permissions: - -- `Microsoft.Storage/storageAccounts/blobServices/containers/write` (to create containers if needed) -- `Microsoft.Storage/storageAccounts/blobServices/containers/read` -- `Microsoft.Storage/storageAccounts/blobServices/containers/blobs/write` -- `Microsoft.Storage/storageAccounts/blobServices/containers/blobs/read` +Ensure your Azure credentials have the permissions to write/read into the container. ## Server Configuration @@ -408,136 +338,3 @@ mapper = create_cloudfront_mapper(request_result.signed_url, zarr_path="results. ds = xr.open_zarr(mapper, consolidated=True) print(ds) ``` - -## Signed URL Format - -### AWS S3 / CloudFront Signed URLs - -CloudFront signed URLs contain three query parameters: - -```text -https://d30anq61ot046p.cloudfront.net/outputs/exec_123/*?Policy=eyJTdGF0ZW1lbnQiOl...\ -&Signature=ABC123...&Key-Pair-Id=KUCQGLNFR6UH1 -``` - -| Parameter | Description | -|-----------|-------------| -| `Policy` | Base64-encoded JSON policy specifying resource and expiration | -| `Signature` | RSA signature of the policy using the private key | -| `Key-Pair-Id` | CloudFront key pair ID used to verify the signature | - -The wildcard (`*`) in the URL path allows access to all files under that prefix. - -### Azure Blob Storage SAS URLs - -Azure SAS (Shared Access Signature) URLs contain multiple query parameters: - -```text -https://mystorageaccount.blob.core.windows.net/workflow-results/outputs/exec_123?\ -sv=2021-06-08&ss=b&srt=co&sp=rl&se=2025-01-01T00:00:00Z&st=2024-12-31T00:00:00Z&spr=https&sig=ABC123... -``` - -| Parameter | Description | -|-----------|-------------| -| `sv` | Service version (API version) | -| `ss` | Services (b=blob) | -| `srt` | Resource types (co=container and object) | -| `sp` | Permissions (rl=read and list) | -| `se` | Expiry time (UTC) | -| `st` | Start time (UTC) | -| `spr` | Protocol (https) | -| `sig` | Signature (HMAC-SHA256 of the string-to-sign) | - -The SAS token provides read and list permissions for all objects in the container under the -specified prefix. - -## Testing - -Run object storage integration tests: - -### AWS S3 Testing - -```bash -# Set required environment variables -export TEST_S3_BUCKET=my-test-bucket -export AWS_ACCESS_KEY_ID=AKIA... -export AWS_SECRET_ACCESS_KEY=... - -# Run S3 upload tests -pytest test/integration/test_object_storage.py -v - -# Run CloudFront signed URL tests (requires additional config) -export TEST_CLOUDFRONT_DOMAIN=https://d30anq61ot046p.cloudfront.net -export TEST_CLOUDFRONT_KEY_PAIR_ID=KUCQGLNFR6UH1 -export TEST_CLOUDFRONT_PRIVATE_KEY_PATH=/path/to/private.pem -pytest test/integration/test_object_storage.py::TestCloudFrontSignedUrl -v -``` - -### Azure Blob Storage Testing - -```bash -# Set required environment variables -export TEST_AZURE_CONTAINER=my-test-container -export AZURE_CONNECTION_STRING="DefaultEndpointsProtocol=https;AccountName=...;AccountKey=...;EndpointSuffix=core.windows.net" -export AZURE_STORAGE_ACCOUNT_NAME=mystorageaccount -export AZURE_STORAGE_ACCOUNT_KEY=... - -# Run Azure upload tests -pytest test/integration/test_object_storage.py -v - -# Run Azure SAS URL tests -pytest test/integration/test_object_storage.py::TestAzureSASUrl -v -``` - -## Troubleshooting - -### Common Issues - -#### AWS S3 / CloudFront Issues - -1. **403 Forbidden from CloudFront** - - Verify the S3 bucket policy allows CloudFront OAC access - - Check that the CloudFront distribution is configured with the correct origin - - Ensure the key pair is in a Key Group associated with the distribution - -2. **Upload failures** - - Verify IAM credentials have `s3:PutObject` permission - - Check bucket name and region are correct - - If using Transfer Acceleration, ensure it's enabled on the bucket - -3. **Slow uploads** - - Enable `use_rust_client` for better performance - - Increase `max_concurrency` for more parallel uploads - - Enable `use_transfer_acceleration` if uploading from distant regions - -#### Azure Blob Storage Issues - -1. **403 Forbidden from Azure** - - Verify the connection string is correct and not expired - - Check that the storage account name and container name are correct - - Ensure the account key is valid (if using account key authentication) - -2. **SAS URL generation failures** - - Ensure `azure_account_name` and `azure_account_key` are provided - - Verify the account key has not been rotated - - Check that the container exists and is accessible - -3. **Upload failures** - - Verify the connection string has write permissions - - Check that the container exists (it will be created automatically if permissions allow) - - Ensure the storage account is not in a restricted network configuration - -4. **Connection string parsing errors** - - Verify the connection string format is correct: `DefaultEndpointsProtocol=https;AccountName=...;AccountKey=...;EndpointSuffix=...` - - Ensure all required components (AccountName, AccountKey) are present - - For custom endpoints, include `BlobEndpoint=` in the connection string - -#### General Issues - -1. **Signed URL expired** - - Increase `signed_url_expires_in` configuration - - Request fresh results from the API (URLs are regenerated) - -2. **Storage type not recognized** - - Ensure `OBJECT_STORAGE_TYPE` is set to either `s3` or `azure` (lowercase) - - Check that the storage type matches your configuration (S3 config for `s3`, Azure config for `azure`) From 3db602fc8abbdb5332a8d93d6b19077a13214f58 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Wed, 25 Feb 2026 15:15:31 -0800 Subject: [PATCH 08/24] update the startup --- .../api_server/conf/config.yaml | 10 +++ serve/inferenceserver/api_server/config.py | 33 +++++++++ serve/inferenceserver/api_server/main.py | 34 +++++++-- .../api_server/workflow/workflow.py | 71 +++++++++++++++++-- .../scripts/start_api_server.sh | 2 +- 5 files changed, 136 insertions(+), 14 deletions(-) diff --git a/serve/inferenceserver/api_server/conf/config.yaml b/serve/inferenceserver/api_server/conf/config.yaml index f654305da..4a5581a81 100644 --- a/serve/inferenceserver/api_server/conf/config.yaml +++ b/serve/inferenceserver/api_server/conf/config.yaml @@ -41,6 +41,7 @@ worker: paths: default_output_dir: /outputs results_zip_dir: /workspace/earth2studio-project/examples/outputs + output_format: zarr # Output format: "zarr" or "netcdf4" result_zip_enabled: false logging: @@ -88,3 +89,12 @@ object_storage: cloudfront_private_key: null # PEM private key content # Signed URL settings signed_url_expires_in: 86400 # 24 hours + +workflow_exposure: + # List of workflow names to expose via API endpoints + # Empty list means all workflows are exposed + exposed_workflows: [] + # Workflows accessible for warmup even if not in exposed_workflows + # These workflows can be called via API for warmup purposes + warmup_workflows: + - example_user_workflow diff --git a/serve/inferenceserver/api_server/config.py b/serve/inferenceserver/api_server/config.py index ef970e568..a6b836bf0 100644 --- a/serve/inferenceserver/api_server/config.py +++ b/serve/inferenceserver/api_server/config.py @@ -145,6 +145,18 @@ class ObjectStorageConfig: ) +@dataclass +class WorkflowExposureConfig: + """Configuration for controlling which workflows are exposed via API endpoints""" + + exposed_workflows: list[str] = field( + default_factory=lambda: [] + ) # Empty list means all workflows are exposed + warmup_workflows: list[str] = field( + default_factory=lambda: ["example_user_workflow"] + ) # Workflows accessible for warmup even if not exposed + + @dataclass class AppConfig: """Root configuration for the application""" @@ -156,6 +168,9 @@ class AppConfig: server: ServerConfig = field(default_factory=ServerConfig) cors: CORSConfig = field(default_factory=CORSConfig) object_storage: ObjectStorageConfig = field(default_factory=ObjectStorageConfig) + workflow_exposure: WorkflowExposureConfig = field( + default_factory=WorkflowExposureConfig + ) class ConfigManager: @@ -233,6 +248,9 @@ def _dict_to_config(self, cfg_dict: dict) -> AppConfig: server=ServerConfig(**cfg_dict.get("server", {})), cors=CORSConfig(**cfg_dict.get("cors", {})), object_storage=ObjectStorageConfig(**cfg_dict.get("object_storage", {})), + workflow_exposure=WorkflowExposureConfig( + **cfg_dict.get("workflow_exposure", {}) + ), ) def _create_default_config_object(self) -> AppConfig: @@ -245,6 +263,7 @@ def _create_default_config_object(self) -> AppConfig: server=ServerConfig(), cors=CORSConfig(), object_storage=ObjectStorageConfig(), + workflow_exposure=WorkflowExposureConfig(), ) def _apply_env_overrides(self) -> None: @@ -289,6 +308,12 @@ def _apply_env_overrides(self) -> None: self._config.paths.results_zip_dir = os.getenv( "RESULTS_ZIP_DIR", default=self._config.paths.results_zip_dir ) + if os.getenv("OUTPUT_FORMAT"): + output_format = os.getenv("OUTPUT_FORMAT", "").lower() + if output_format in ["zarr", "netcdf4"]: + self._config.paths.output_format = cast( + Literal["zarr", "netcdf4"], output_format + ) # Logging overrides if os.getenv("LOG_LEVEL"): @@ -412,6 +437,14 @@ def _apply_env_overrides(self) -> None: "AZURE_CONTAINER_NAME" ) + # Workflow exposure overrides + if os.getenv("EXPOSED_WORKFLOWS"): + # Parse comma-separated list of workflow names + exposed_workflows_str = os.getenv("EXPOSED_WORKFLOWS", "") + self._config.workflow_exposure.exposed_workflows = [ + w.strip() for w in exposed_workflows_str.split(",") if w.strip() + ] + logger.debug("Environment variable overrides applied") def _ensure_paths_exist(self) -> None: diff --git a/serve/inferenceserver/api_server/main.py b/serve/inferenceserver/api_server/main.py index b51e7f214..e1f6393ee 100644 --- a/serve/inferenceserver/api_server/main.py +++ b/serve/inferenceserver/api_server/main.py @@ -324,8 +324,8 @@ async def get_metrics() -> Response: @app.get("/v1/workflows") @app.get("/v1/infer/workflows") async def list_workflows() -> dict[str, dict[str, str]]: - """List all available workflows""" - workflows = workflow_registry.list_workflows() + """List all available workflows (only exposed workflows)""" + workflows = workflow_registry.list_workflows(exposed_only=True) return {"workflows": workflows} @@ -345,12 +345,16 @@ async def get_workflow_schema(workflow_name: str) -> dict[str, Any]: Returns: JSON schema for the workflow parameters """ - # Check if workflow exists + # Check if workflow exists and is exposed workflow_class = workflow_registry.get_workflow_class(workflow_name) if not workflow_class: raise HTTPException( status_code=404, detail=f"Workflow '{workflow_name}' not found" ) + if not workflow_registry.is_workflow_exposed(workflow_name): + raise HTTPException( + status_code=404, detail=f"Workflow '{workflow_name}' is not exposed" + ) try: # Get the Parameters class from the workflow @@ -406,12 +410,16 @@ async def execute_workflow( workflow_name: str, request: WorkflowExecutionRequest ) -> WorkflowExecutionResponse: """Execute a custom workflow""" - # Check if workflow exists and get the workflow class for validation + # Check if workflow exists and is exposed custom_workflow_class = workflow_registry.get_workflow_class(workflow_name) if not custom_workflow_class: raise HTTPException( status_code=404, detail=f"Workflow '{workflow_name}' not found" ) + if not workflow_registry.is_workflow_exposed(workflow_name): + raise HTTPException( + status_code=404, detail=f"Workflow '{workflow_name}' is not exposed" + ) # Validate parameters early to provide immediate feedback using classmethod try: @@ -515,12 +523,16 @@ async def get_workflow_status(workflow_name: str, execution_id: str) -> Workflow # Create logger adapter with execution_id log = logging.LoggerAdapter(logger, {"execution_id": execution_id}) - # Check if workflow exists + # Check if workflow exists and is exposed custom_workflow_class = workflow_registry.get_workflow_class(workflow_name) if not custom_workflow_class: raise HTTPException( status_code=404, detail=f"Custom workflow '{workflow_name}' not found" ) + if not workflow_registry.is_workflow_exposed(workflow_name): + raise HTTPException( + status_code=404, detail=f"Workflow '{workflow_name}' is not exposed" + ) try: result = custom_workflow_class._get_execution_data( @@ -563,12 +575,16 @@ async def get_workflow_results( # Create logger adapter with execution_id log = logging.LoggerAdapter(logger, {"execution_id": execution_id}) - # Check if workflow exists + # Check if workflow exists and is exposed custom_workflow_class = workflow_registry.get_workflow_class(workflow_name) if not custom_workflow_class: raise HTTPException( status_code=404, detail=f"Custom workflow '{workflow_name}' not found" ) + if not workflow_registry.is_workflow_exposed(workflow_name): + raise HTTPException( + status_code=404, detail=f"Workflow '{workflow_name}' is not exposed" + ) # Check workflow status first try: @@ -673,12 +689,16 @@ async def get_workflow_result_file( Returns: Streaming response with the file contents """ - # Check if workflow exists + # Check if workflow exists and is exposed custom_workflow_class = workflow_registry.get_workflow_class(workflow_name) if not custom_workflow_class: raise HTTPException( status_code=404, detail=f"Custom workflow '{workflow_name}' not found" ) + if not workflow_registry.is_workflow_exposed(workflow_name): + raise HTTPException( + status_code=404, detail=f"Workflow '{workflow_name}' is not exposed" + ) # Check workflow status first try: diff --git a/serve/inferenceserver/api_server/workflow/workflow.py b/serve/inferenceserver/api_server/workflow/workflow.py index 01c93992e..8e786c34b 100644 --- a/serve/inferenceserver/api_server/workflow/workflow.py +++ b/serve/inferenceserver/api_server/workflow/workflow.py @@ -662,12 +662,71 @@ def get( return instance - def list_workflows(self) -> dict[str, str]: - """List all registered workflows""" - return { - name: workflow_class.description - for name, workflow_class in self._workflows.items() - } + def is_workflow_exposed(self, workflow_name: str) -> bool: + """ + Check if a workflow is exposed via API. + + A workflow is exposed if: + - The exposed_workflows list is empty (all workflows exposed by default), OR + - The workflow name is in the exposed_workflows list, OR + - The workflow name is in the warmup_workflows list (accessible for warmup) + + Args: + workflow_name: Name of the workflow to check + + Returns: + True if workflow should be exposed, False otherwise + """ + from api_server.config import get_config + + config = get_config() + exposed_workflows = config.workflow_exposure.exposed_workflows + warmup_workflows = config.workflow_exposure.warmup_workflows + + # Empty list means all workflows are exposed + if not exposed_workflows: + return True + + # Check if in exposed list or warmup list + return workflow_name in exposed_workflows or workflow_name in warmup_workflows + + def list_workflows(self, exposed_only: bool = True) -> dict[str, str]: + """ + List registered workflows. + + Args: + exposed_only: If True, only return workflows that are in exposed_workflows + (warmup-only workflows are excluded from public listing). + If False, return all registered workflows. + + Returns: + Dictionary mapping workflow names to descriptions + """ + if exposed_only: + from api_server.config import get_config + + config = get_config() + exposed_workflows = config.workflow_exposure.exposed_workflows + + # Empty list means all workflows are exposed (including warmup) + if not exposed_workflows: + return { + name: workflow_class.description + for name, workflow_class in self._workflows.items() + } + + # Only return workflows in the exposed_workflows list + # (warmup-only workflows are excluded from public listing) + return { + name: workflow_class.description + for name, workflow_class in self._workflows.items() + if name in exposed_workflows + } + else: + return { + name: workflow_class.description + for name, workflow_class in self._workflows.items() + } def discover_and_register_from_directories( self, workflow_dirs: list, include_builtin: bool = True diff --git a/serve/inferenceserver/scripts/start_api_server.sh b/serve/inferenceserver/scripts/start_api_server.sh index 5e22fa04f..edde13f2b 100755 --- a/serve/inferenceserver/scripts/start_api_server.sh +++ b/serve/inferenceserver/scripts/start_api_server.sh @@ -235,7 +235,7 @@ echo "API docs at http://localhost:$API_PORT/docs" # Wait for health check to pass before invoking warmup workflow echo "" echo "Waiting for health check to pass..." -MAX_HEALTH_RETRIES=30 +MAX_HEALTH_RETRIES=60 HEALTH_RETRY_INTERVAL=2 for i in $(seq 1 $MAX_HEALTH_RETRIES); do if curl -s "http://localhost:$API_PORT/health" | grep -q '"status":"healthy"'; then From 0d5c60ced6cf1e007451a167c845eb41a0bde9a4 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Thu, 26 Feb 2026 11:43:20 -0800 Subject: [PATCH 09/24] update uv.lock --- uv.lock | 865 +++++++++++++++++++++++++++++++------------------------- 1 file changed, 475 insertions(+), 390 deletions(-) diff --git a/uv.lock b/uv.lock index 4a777b726..ce74ef1a0 100644 --- a/uv.lock +++ b/uv.lock @@ -2,14 +2,30 @@ version = 1 revision = 1 requires-python = ">=3.11" resolution-markers = [ - "python_full_version >= '3.14' and sys_platform == 'linux'", - "python_full_version == '3.13.*' and sys_platform == 'linux'", - "python_full_version >= '3.14' and sys_platform != 'linux'", - "python_full_version == '3.13.*' and sys_platform != 'linux'", - "python_full_version == '3.12.*' and sys_platform == 'linux'", - "python_full_version == '3.12.*' and sys_platform != 'linux'", - "python_full_version < '3.12' and sys_platform == 'linux'", - "python_full_version < '3.12' and sys_platform != 'linux'", + "python_full_version >= '3.14' and platform_machine == 'aarch64' and sys_platform == 'linux'", + "python_full_version == '3.13.*' and platform_machine == 'aarch64' and sys_platform == 'linux'", + "python_full_version >= '3.14' and platform_machine == 'aarch64' and sys_platform != 'linux'", + "python_full_version == '3.13.*' and platform_machine == 'aarch64' and sys_platform != 'linux'", + "python_full_version >= '3.14' and platform_machine == 'x86_64' and sys_platform == 'linux'", + "python_full_version == '3.13.*' and platform_machine == 'x86_64' and sys_platform == 'linux'", + "python_full_version >= '3.14' and platform_machine == 'x86_64' and sys_platform != 'linux'", + "python_full_version == '3.13.*' and platform_machine == 'x86_64' and sys_platform != 'linux'", + "python_full_version >= '3.14' and platform_machine != 'aarch64' and platform_machine != 'x86_64' and sys_platform == 'linux'", + "python_full_version == '3.13.*' and platform_machine != 'aarch64' and platform_machine != 'x86_64' and sys_platform == 'linux'", + "python_full_version >= '3.14' and platform_machine != 'aarch64' and platform_machine != 'x86_64' and sys_platform != 'linux'", + "python_full_version == '3.13.*' and platform_machine != 'aarch64' and platform_machine != 'x86_64' and sys_platform != 'linux'", + "python_full_version == '3.12.*' and platform_machine == 'aarch64' and sys_platform == 'linux'", + "python_full_version == '3.12.*' and platform_machine == 'aarch64' and sys_platform != 'linux'", + "python_full_version == '3.12.*' and platform_machine == 'x86_64' and sys_platform == 'linux'", + "python_full_version == '3.12.*' and platform_machine == 'x86_64' and sys_platform != 'linux'", + "python_full_version == '3.12.*' and platform_machine != 'aarch64' and platform_machine != 'x86_64' and sys_platform == 'linux'", + "python_full_version == '3.12.*' and platform_machine != 'aarch64' and platform_machine != 'x86_64' and sys_platform != 'linux'", + "python_full_version < '3.12' and platform_machine == 'aarch64' and sys_platform == 'linux'", + 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config.object_storage.bucket + or config.object_storage.azure_container_name + or "", "storage_type": config.object_storage.storage_type, "max_concurrency": config.object_storage.max_concurrency, "multipart_chunksize": config.object_storage.multipart_chunksize, diff --git a/serve/inferenceserver/api_server/object_storage.py b/serve/inferenceserver/api_server/object_storage.py index db8730ee4..9d18205cc 100644 --- a/serve/inferenceserver/api_server/object_storage.py +++ b/serve/inferenceserver/api_server/object_storage.py @@ -282,6 +282,7 @@ def __init__( # Extract account name from connection string if not provided directly if not azure_account_name: + self.azure_account_name = None # Connection string format: DefaultEndpointsProtocol=https;AccountName=...;AccountKey=... for part in azure_connection_string.split(";"): if part.startswith("AccountName="): From f2001f0047f025b0a506a38bbd162b64fcab5173 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Thu, 26 Feb 2026 14:17:55 -0800 Subject: [PATCH 11/24] update tests --- .../api_server/conf/config.yaml | 5 + test/serve/test_workflow.py | 168 ++++++++++++++++++ 2 files changed, 173 insertions(+) diff --git a/serve/inferenceserver/api_server/conf/config.yaml b/serve/inferenceserver/api_server/conf/config.yaml index 4a5581a81..2f123bbde 100644 --- a/serve/inferenceserver/api_server/conf/config.yaml +++ b/serve/inferenceserver/api_server/conf/config.yaml @@ -89,6 +89,11 @@ object_storage: cloudfront_private_key: null # PEM private key content # Signed URL settings signed_url_expires_in: 86400 # 24 hours + # Azure Blob Storage configuration + azure_connection_string: null + azure_account_name: null + azure_account_key: null + azure_container_name: null workflow_exposure: # List of workflow names to expose via API endpoints diff --git a/test/serve/test_workflow.py b/test/serve/test_workflow.py index f357f81d6..eaf28877e 100644 --- a/test/serve/test_workflow.py +++ b/test/serve/test_workflow.py @@ -1411,6 +1411,174 @@ def test_list_workflows_empty(self): assert len(workflows) == 0 assert isinstance(workflows, dict) + def test_list_workflows_exposed_only_true_with_empty_exposed_list(self): + """Test list_workflows with exposed_only=True when exposed_workflows is empty""" + self.registry.register(Workflow1) + self.registry.register(Workflow2) + self.registry.register(Workflow3) + + with patch( + "api_server.workflow.workflow.get_config", + return_value=get_test_config(), + ): + workflows = self.registry.list_workflows(exposed_only=True) + # Empty list means all workflows are exposed + assert len(workflows) == 3 + assert "workflow1" in workflows + assert "workflow2" in workflows + assert "workflow3" in workflows + + def test_list_workflows_exposed_only_true_with_specific_exposed(self): + """Test list_workflows with exposed_only=True when specific workflows are exposed""" + self.registry.register(Workflow1) + self.registry.register(Workflow2) + self.registry.register(Workflow3) + + test_config = get_test_config() + test_config.workflow_exposure.exposed_workflows = ["workflow1", "workflow2"] + + with patch( + "api_server.workflow.workflow.get_config", + return_value=test_config, + ): + workflows = self.registry.list_workflows(exposed_only=True) + # Only exposed workflows should be returned + assert len(workflows) == 2 + assert "workflow1" in workflows + assert "workflow2" in workflows + assert "workflow3" not in workflows + + def test_list_workflows_exposed_only_true_excludes_warmup_only(self): + """Test list_workflows with exposed_only=True excludes warmup-only workflows""" + self.registry.register(Workflow1) + self.registry.register(Workflow2) + + test_config = get_test_config() + test_config.workflow_exposure.exposed_workflows = ["workflow1"] + test_config.workflow_exposure.warmup_workflows = ["workflow2"] + + with patch( + "api_server.workflow.workflow.get_config", + return_value=test_config, + ): + workflows = self.registry.list_workflows(exposed_only=True) + # Only exposed workflows, not warmup-only + assert len(workflows) == 1 + assert "workflow1" in workflows + assert "workflow2" not in workflows + + def test_list_workflows_exposed_only_false(self): + """Test list_workflows with exposed_only=False returns all workflows""" + self.registry.register(Workflow1) + self.registry.register(Workflow2) + self.registry.register(Workflow3) + + test_config = get_test_config() + test_config.workflow_exposure.exposed_workflows = ["workflow1"] + + with patch( + "api_server.workflow.workflow.get_config", + return_value=test_config, + ): + workflows = self.registry.list_workflows(exposed_only=False) + # Should return all workflows regardless of exposure + assert len(workflows) == 3 + assert "workflow1" in workflows + assert "workflow2" in workflows + assert "workflow3" in workflows + + def test_is_workflow_exposed_with_empty_exposed_list(self): + """Test is_workflow_exposed when exposed_workflows is empty (all exposed)""" + self.registry.register(Workflow1) + self.registry.register(Workflow2) + + with patch( + "api_server.workflow.workflow.get_config", + return_value=get_test_config(), + ): + # Empty list means all workflows are exposed + assert self.registry.is_workflow_exposed("workflow1") is True + assert self.registry.is_workflow_exposed("workflow2") is True + assert self.registry.is_workflow_exposed("nonexistent") is True + + def test_is_workflow_exposed_with_specific_exposed(self): + """Test is_workflow_exposed when specific workflows are exposed""" + self.registry.register(Workflow1) + self.registry.register(Workflow2) + self.registry.register(Workflow3) + + test_config = get_test_config() + test_config.workflow_exposure.exposed_workflows = ["workflow1", "workflow2"] + + with patch( + "api_server.workflow.workflow.get_config", + return_value=test_config, + ): + assert self.registry.is_workflow_exposed("workflow1") is True + assert self.registry.is_workflow_exposed("workflow2") is True + assert self.registry.is_workflow_exposed("workflow3") is False + + def test_is_workflow_exposed_with_warmup_workflows(self): + """Test is_workflow_exposed includes warmup workflows""" + self.registry.register(Workflow1) + self.registry.register(Workflow2) + self.registry.register(Workflow3) + + test_config = get_test_config() + test_config.workflow_exposure.exposed_workflows = ["workflow1"] + test_config.workflow_exposure.warmup_workflows = ["workflow2"] + + with patch( + "api_server.workflow.workflow.get_config", + return_value=test_config, + ): + # Exposed workflow should be accessible + assert self.registry.is_workflow_exposed("workflow1") is True + # Warmup workflow should also be accessible + assert self.registry.is_workflow_exposed("workflow2") is True + # Neither exposed nor warmup should not be accessible + assert self.registry.is_workflow_exposed("workflow3") is False + + def test_is_workflow_exposed_with_overlapping_exposed_and_warmup(self): + """Test is_workflow_exposed when workflow is both exposed and warmup""" + self.registry.register(Workflow1) + + test_config = get_test_config() + test_config.workflow_exposure.exposed_workflows = ["workflow1"] + test_config.workflow_exposure.warmup_workflows = ["workflow1"] + + with patch( + "api_server.workflow.workflow.get_config", + return_value=test_config, + ): + # Should be accessible if in either list + assert self.registry.is_workflow_exposed("workflow1") is True + + def test_is_workflow_exposed_with_nonexistent_workflow(self): + """Test is_workflow_exposed with nonexistent workflow name""" + test_config = get_test_config() + test_config.workflow_exposure.exposed_workflows = ["workflow1"] + + with patch( + "api_server.workflow.workflow.get_config", + return_value=test_config, + ): + # Nonexistent workflow not in exposed list should return False + assert self.registry.is_workflow_exposed("nonexistent") is False + + def test_is_workflow_exposed_with_nonexistent_workflow_in_warmup(self): + """Test is_workflow_exposed with nonexistent workflow in warmup list""" + test_config = get_test_config() + test_config.workflow_exposure.exposed_workflows = ["workflow1"] + test_config.workflow_exposure.warmup_workflows = ["nonexistent"] + + with patch( + "api_server.workflow.workflow.get_config", + return_value=test_config, + ): + # Should return True if in warmup list even if not registered + assert self.registry.is_workflow_exposed("nonexistent") is True + def test_set_redis_client(self): """Test setting Redis client for workflow instances""" self.registry.register(Workflow1) From d6e899c6037d1cc03c40de07512486b862aafd39 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Thu, 26 Feb 2026 14:28:45 -0800 Subject: [PATCH 12/24] profiled ensemble --- test/serve/test_workflow.py | 28 ++++++++++++++++------------ 1 file changed, 16 insertions(+), 12 deletions(-) diff --git a/test/serve/test_workflow.py b/test/serve/test_workflow.py index eaf28877e..36fc7af4f 100644 --- a/test/serve/test_workflow.py +++ b/test/serve/test_workflow.py @@ -49,6 +49,8 @@ def get_test_config(base_path: str | None = None): # type: ignore[no-untyped-de base_path = tempfile.mkdtemp(prefix="e2s_testing_") config.paths.default_output_dir = base_path config.paths.results_zip_dir = base_path + # Ensure exposed_workflows is empty list for tests (empty means all exposed) + config.workflow_exposure.exposed_workflows = [] return config @@ -59,7 +61,7 @@ def setup_test_paths(): # type: ignore[no-untyped-def] test_config = get_test_config(tmpdir) with ( patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ), patch("api_server.config.get_config", return_value=test_config), @@ -1418,7 +1420,7 @@ def test_list_workflows_exposed_only_true_with_empty_exposed_list(self): self.registry.register(Workflow3) with patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=get_test_config(), ): workflows = self.registry.list_workflows(exposed_only=True) @@ -1438,7 +1440,7 @@ def test_list_workflows_exposed_only_true_with_specific_exposed(self): test_config.workflow_exposure.exposed_workflows = ["workflow1", "workflow2"] with patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ): workflows = self.registry.list_workflows(exposed_only=True) @@ -1458,7 +1460,7 @@ def test_list_workflows_exposed_only_true_excludes_warmup_only(self): test_config.workflow_exposure.warmup_workflows = ["workflow2"] with patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ): workflows = self.registry.list_workflows(exposed_only=True) @@ -1477,7 +1479,7 @@ def test_list_workflows_exposed_only_false(self): test_config.workflow_exposure.exposed_workflows = ["workflow1"] with patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ): workflows = self.registry.list_workflows(exposed_only=False) @@ -1492,9 +1494,11 @@ def test_is_workflow_exposed_with_empty_exposed_list(self): self.registry.register(Workflow1) self.registry.register(Workflow2) + test_config = get_test_config() + test_config.workflow_exposure.exposed_workflows = [] with patch( - "api_server.workflow.workflow.get_config", - return_value=get_test_config(), + "api_server.config.get_config", + return_value=test_config, ): # Empty list means all workflows are exposed assert self.registry.is_workflow_exposed("workflow1") is True @@ -1511,7 +1515,7 @@ def test_is_workflow_exposed_with_specific_exposed(self): test_config.workflow_exposure.exposed_workflows = ["workflow1", "workflow2"] with patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ): assert self.registry.is_workflow_exposed("workflow1") is True @@ -1529,7 +1533,7 @@ def test_is_workflow_exposed_with_warmup_workflows(self): test_config.workflow_exposure.warmup_workflows = ["workflow2"] with patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ): # Exposed workflow should be accessible @@ -1548,7 +1552,7 @@ def test_is_workflow_exposed_with_overlapping_exposed_and_warmup(self): test_config.workflow_exposure.warmup_workflows = ["workflow1"] with patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ): # Should be accessible if in either list @@ -1560,7 +1564,7 @@ def test_is_workflow_exposed_with_nonexistent_workflow(self): test_config.workflow_exposure.exposed_workflows = ["workflow1"] with patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ): # Nonexistent workflow not in exposed list should return False @@ -1573,7 +1577,7 @@ def test_is_workflow_exposed_with_nonexistent_workflow_in_warmup(self): test_config.workflow_exposure.warmup_workflows = ["nonexistent"] with patch( - "api_server.workflow.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ): # Should return True if in warmup list even if not registered From ddcf46e48a826e557bb89e73aab3a241fe39722f Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Mon, 2 Mar 2026 09:02:17 -0800 Subject: [PATCH 13/24] cleanup dockerfile --- serve/Dockerfile | 4 ---- 1 file changed, 4 deletions(-) diff --git a/serve/Dockerfile b/serve/Dockerfile index e8fbaf74a..6c9cde587 100644 --- a/serve/Dockerfile +++ b/serve/Dockerfile @@ -27,10 +27,6 @@ RUN uv pip install --system --break-system-packages "earth2studio[cbottle,corrdi RUN uv pip install --system --break-system-packages "earth2studio[data,perturbation,statistics] @ git+https://github.com/NVIDIA/earth2studio.git@${E2S_HASH}" RUN uv pip install --system --break-system-packages cartopy xskillscore matplotlib -# Install the requirements for stormcast. -RUN pip uninstall -y torch-harmonics && \ - FORCE_CUDA_EXTENSION=1 uv pip install --system --break-system-packages --no-build-isolation torch-harmonics==0.8.0 - # Install the requirements for the inference server. COPY serve /workspace/earth2studio-project/serve RUN cd / && mkdir /workspace/earth2studio-project/examples && ln -s /outputs /workspace/earth2studio-project/examples/outputs From a6472faa6c59cd96c774c35b311a734baea8d2f7 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Mon, 2 Mar 2026 17:12:58 -0800 Subject: [PATCH 14/24] fixes, and add ranged streaming --- serve/inferenceserver/api_server/main.py | 85 +++++++----- serve/inferenceserver/api_server/utils.py | 129 ++++++++++++++++++ .../scripts/start_api_server.sh | 10 +- 3 files changed, 183 insertions(+), 41 deletions(-) diff --git a/serve/inferenceserver/api_server/main.py b/serve/inferenceserver/api_server/main.py index e1f6393ee..96f7146b6 100644 --- a/serve/inferenceserver/api_server/main.py +++ b/serve/inferenceserver/api_server/main.py @@ -35,7 +35,7 @@ import aiofiles # type: ignore[import-untyped] import redis as redis_sync # type: ignore[import-untyped] # For RQ (synchronous) import redis.asyncio as redis # type: ignore[import-untyped] -from fastapi import FastAPI, HTTPException +from fastapi import FastAPI, HTTPException, Request from fastapi.middleware.cors import CORSMiddleware from fastapi.responses import Response, StreamingResponse from prometheus_client import CONTENT_TYPE_LATEST, generate_latest @@ -45,8 +45,10 @@ # Import configuration from api_server.config import get_config, get_config_manager from api_server.utils import ( + create_file_stream, get_inference_request_output_path_key, get_inference_request_zip_key, + parse_range_header, ) # Import workflow registry @@ -676,7 +678,10 @@ async def get_workflow_results( @app.get("/v1/infer/{workflow_name}/{execution_id}/results/{filepath:path}") async def get_workflow_result_file( - workflow_name: str, execution_id: str, filepath: str + workflow_name: str, + execution_id: str, + filepath: str, + request: Request, ) -> StreamingResponse: """ Stream a specific file from the workflow execution results. @@ -751,29 +756,32 @@ async def get_workflow_result_file( }, ) - # Stream the zip file - async def stream_zip_file() -> AsyncGenerator[bytes, None]: - """Stream the zip file contents""" - try: - chunk_size = 8192 - async with aiofiles.open(zip_file_path, "rb") as f: - while True: - chunk = await f.read(chunk_size) - if not chunk: - break - yield chunk - await asyncio.sleep(0) - except Exception: - logger.exception(f"Error streaming zip file {zip_file_path}") - raise + # Get file size and parse range header + zip_file_size = zip_file_path.stat().st_size + range_header = request.headers.get("Range") + start, end, content_length, status_code = parse_range_header( + range_header, zip_file_size + ) + + # Create streaming response + stream_generator = create_file_stream( + zip_file_path, start, content_length, "zip file" + ) headers = { "Content-Disposition": f'attachment; filename="{zip_filename}"', - "Content-Length": str(zip_file_path.stat().st_size), + "Content-Length": str(content_length), + "Accept-Ranges": "bytes", } + if range_header: + headers["Content-Range"] = f"bytes {start}-{end}/{zip_file_size}" + return StreamingResponse( - stream_zip_file(), media_type="application/zip", headers=headers + stream_generator, + media_type="application/zip", + headers=headers, + status_code=status_code, ) # Regular case: get file from output directory @@ -854,29 +862,34 @@ async def stream_zip_file() -> AsyncGenerator[bytes, None]: if media_type is None: media_type = "application/octet-stream" - # Stream the file - async def stream_file() -> AsyncGenerator[bytes, None]: - """Stream the file contents""" - try: - chunk_size = 8192 - async with aiofiles.open(requested_path, "rb") as f: - while True: - chunk = await f.read(chunk_size) - if not chunk: - break - yield chunk - await asyncio.sleep(0) - except Exception: - logger.exception(f"Error streaming file {requested_path}") - raise + # Get file size and parse range header + file_size = requested_path.stat().st_size + range_header = request.headers.get("Range") + start, end, content_length, status_code = parse_range_header( + range_header, file_size + ) + + # Create streaming response + stream_generator = create_file_stream( + requested_path, start, content_length, "file" + ) # Set appropriate headers headers = { "Content-Disposition": f'attachment; filename="{requested_path.name}"', - "Content-Length": str(requested_path.stat().st_size), + "Content-Length": str(content_length), + "Accept-Ranges": "bytes", } - return StreamingResponse(stream_file(), media_type=media_type, headers=headers) + if range_header: + headers["Content-Range"] = f"bytes {start}-{end}/{file_size}" + + return StreamingResponse( + stream_generator, + media_type=media_type, + headers=headers, + status_code=status_code, + ) except HTTPException: raise diff --git a/serve/inferenceserver/api_server/utils.py b/serve/inferenceserver/api_server/utils.py index 0beffb3b5..1901ca0ad 100644 --- a/serve/inferenceserver/api_server/utils.py +++ b/serve/inferenceserver/api_server/utils.py @@ -20,12 +20,18 @@ This module contains: - Redis key generation functions - Pipeline stage queuing utilities +- File streaming utilities with range support """ +import asyncio import logging +from collections.abc import AsyncGenerator +from pathlib import Path from typing import Any, Literal +import aiofiles # type: ignore[import-untyped] import redis # type: ignore[import-untyped] +from fastapi import HTTPException from rq import Queue from api_server.config import get_config @@ -63,6 +69,129 @@ def get_signed_url_key(request_id: str) -> str: return f"inference_request:{request_id}:signed_url" +# ============================================================================= +# File Streaming Utilities +# ============================================================================= + + +def parse_range_header( + range_header: str | None, file_size: int +) -> tuple[int, int, int, int]: + """ + Parse Range header and return start, end, content_length, and status_code. + + Args: + range_header: The Range header value from the request, or None + file_size: Total size of the file in bytes + + Returns: + Tuple of (start, end, content_length, status_code) + + Raises: + HTTPException: If the range is invalid (416 status) + """ + start = 0 + end = file_size - 1 + status_code = 200 + + if not range_header: + return (start, end, file_size, status_code) + + # Parse Range header: "bytes=start-end" or "bytes=start-" or "bytes=-suffix" + if not range_header.startswith("bytes="): + raise HTTPException( + status_code=416, + detail={ + "error": "Range Not Satisfiable", + "details": "Only byte ranges are supported", + }, + ) + + range_spec = range_header[6:] # Remove "bytes=" prefix + ranges = range_spec.split(",") + + # For now, only handle single range (first range) + if len(ranges) > 1: + logger.warning(f"Multiple ranges requested, using first: {range_header}") + + range_part = ranges[0].strip() + if "-" not in range_part: + raise HTTPException( + status_code=416, + detail={ + "error": "Range Not Satisfiable", + "details": "Invalid range format", + }, + ) + + start_str, end_str = range_part.split("-", 1) + + if start_str: + start = int(start_str) + if end_str: + end = int(end_str) + else: + end = file_size - 1 + else: + # Suffix range: "-suffix" means last N bytes + suffix = int(end_str) + start = max(0, file_size - suffix) + end = file_size - 1 + + # Validate range + if start < 0 or start >= file_size or end < start or end >= file_size: + raise HTTPException( + status_code=416, + headers={ + "Content-Range": f"bytes */{file_size}", + }, + detail={ + "error": "Range Not Satisfiable", + "details": f"Requested range {start}-{end} is invalid for file size {file_size}", + }, + ) + + status_code = 206 # Partial Content + content_length = end - start + 1 + return (start, end, content_length, status_code) + + +async def create_file_stream( + file_path: Path, start: int, content_length: int, file_description: str = "file" +) -> AsyncGenerator[bytes, None]: + """ + Create an async generator that streams a file with optional range support. + + Args: + file_path: Path to the file to stream + start: Starting byte position (0 for full file, or range start) + content_length: Number of bytes to stream + file_description: Description for error logging + + Yields: + Bytes chunks from the file + """ + try: + chunk_size = 1048576 # 1MB chunks for better performance + async with aiofiles.open(file_path, "rb") as f: + # Seek to start position if range request + if start > 0: + await f.seek(start) + + remaining = content_length + while remaining > 0: + read_size = min(chunk_size, remaining) + chunk = await f.read(read_size) + if not chunk: + break + yield chunk + remaining -= len(chunk) + await asyncio.sleep(0) + except Exception: + logger.exception(f"Error streaming {file_description} {file_path}") + raise + + # ============================================================================= # Pipeline Stage Utilities # ============================================================================= diff --git a/serve/inferenceserver/scripts/start_api_server.sh b/serve/inferenceserver/scripts/start_api_server.sh index edde13f2b..a53bf7cd1 100755 --- a/serve/inferenceserver/scripts/start_api_server.sh +++ b/serve/inferenceserver/scripts/start_api_server.sh @@ -119,7 +119,7 @@ trap cleanup SIGINT SIGTERM export EARTH2STUDIO_API_ACTIVE=1 # Start multiple workers using uvicorn with extended timeouts for large file downloads -uvicorn api_server.main:app --host 0.0.0.0 --port $API_PORT --workers $NUM_WORKERS --loop asyncio --timeout-keep-alive 300 --timeout-graceful-shutdown 30 & +CUDA_VISIBLE_DEVICES="" uvicorn api_server.main:app --host 0.0.0.0 --port $API_PORT --workers $NUM_WORKERS --loop asyncio --timeout-keep-alive 300 --timeout-graceful-shutdown 30 & UVICORN_PID=$! # Start RQ workers @@ -143,7 +143,7 @@ done echo "Starting $NUM_ZIP_WORKERS zip workers for result_zip queue..." ZIP_WORKER_PIDS=() for i in $(seq 1 $NUM_ZIP_WORKERS); do - rq worker -w rq.worker.SimpleWorker result_zip & + CUDA_VISIBLE_DEVICES="" rq worker -w rq.worker.SimpleWorker result_zip & ZIP_WORKER_PIDS+=($!) echo "Started zip worker $i for result_zip queue (PID: $!)" done @@ -152,7 +152,7 @@ done echo "Starting $NUM_OBJSTORE_WORKERS object storage workers..." OBJSTORE_WORKER_PIDS=() for i in $(seq 1 $NUM_OBJSTORE_WORKERS); do - rq worker -w rq.worker.SimpleWorker object_storage & + CUDA_VISIBLE_DEVICES="" rq worker -w rq.worker.SimpleWorker object_storage & OBJSTORE_WORKER_PIDS+=($!) echo "Started object storage worker $i (PID: $!)" done @@ -161,13 +161,13 @@ done echo "Starting $NUM_FINALIZE_WORKERS finalize metadata workers..." FINALIZE_WORKER_PIDS=() for i in $(seq 1 $NUM_FINALIZE_WORKERS); do - rq worker -w rq.worker.SimpleWorker finalize_metadata & + CUDA_VISIBLE_DEVICES="" rq worker -w rq.worker.SimpleWorker finalize_metadata & FINALIZE_WORKER_PIDS+=($!) echo "Started finalize metadata worker $i (PID: $!)" done # Start cleanup daemon -python -m api_server.cleanup_daemon & +CUDA_VISIBLE_DEVICES="" python -m api_server.cleanup_daemon & CLEANUP_DAEMON_PID=$! echo "Started cleanup daemon (PID: $CLEANUP_DAEMON_PID)" From 5b1125ec2c2794ad4418987348628a431f52e159 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Tue, 3 Mar 2026 14:56:00 -0800 Subject: [PATCH 15/24] add progress update --- .../example_workflows/foundry_fcn3.py | 12 +++++- .../foundry_fcn3_stormscope_goes.py | 27 ++++++++++++- .../api_server/workflow/e2workflow.py | 38 ++++++++++++++++++- 3 files changed, 73 insertions(+), 4 deletions(-) diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py index 293bae096..050416459 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py @@ -6,7 +6,7 @@ import torch import zarr -from api_server.workflow import Earth2Workflow, workflow_registry +from api_server.workflow import Earth2Workflow, WorkflowProgress, workflow_registry from earth2studio.data import PlanetaryComputerECMWFOpenDataIFS, fetch_data from earth2studio.io import IOBackend, NetCDF4Backend, ZarrBackend from earth2studio.models.px import FCN3 @@ -153,7 +153,9 @@ def __call__( self.setup_io(io, output_coords, seeds) logger.info("Starting inference") + total_samples = len(seeds) for si, seed in enumerate(seeds): + self.fcn3.set_rng(seed=seed) iterator = self.fcn3.create_iterator(x_ori.clone(), coords_ori.copy()) for ii, (x, coords) in enumerate(iterator): @@ -179,5 +181,13 @@ def __call__( # Write to disk io.write(*split_coords(x_out, coords_out)) + # Update progress for step within sample + progress = WorkflowProgress( + progress=f"Processing sample {si + 1}/{total_samples} (seed={seed}), step {ii + 1}/{n_steps + 1}", + current_step=ii + 1, + total_steps=n_steps + 1, + ) + self.update_progress(progress) + if ii == n_steps: break diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py index da08694b2..4e111c365 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py @@ -8,7 +8,7 @@ import xarray as xr import zarr -from api_server.workflow import Earth2Workflow, workflow_registry +from api_server.workflow import Earth2Workflow, WorkflowProgress, workflow_registry from earth2studio.data import ( GOES, InferenceOutputSource, @@ -248,6 +248,8 @@ def run_fcn3( seed_fcn3: int, start_time_stormscope: datetime, lead_times: np.ndarray, + current_sample: int | None = None, + total_samples: int | None = None, ) -> None: # Create z500 conditioning with FCN3 coords_in = self.stormscope.input_coords() @@ -293,6 +295,15 @@ def run_fcn3( ) io.write(*split_coords(x, coords_x)) + # Update progress for FCN3 step + if current_sample is not None and total_samples is not None: + progress = WorkflowProgress( + progress=f"Processing FCN3 conditioning (seed_fcn3={seed_fcn3}) for sample {current_sample}/{total_samples}, step {i + 1}/{total_steps}", + current_step=i + 1, + total_steps=total_steps, + ) + self.update_progress(progress) + if (i + 1) == total_steps: break @@ -306,6 +317,7 @@ def run_stormscope( seed_stormscope: int, lead_times: np.ndarray, variables: np.ndarray, + total_samples: int | None = None, ) -> None: def prep_output( y_pred: torch.Tensor, coords_pred: CoordSystem @@ -355,6 +367,15 @@ def prep_output( y_out, coords_out = prep_output(y_pred, coords_pred) io.write(*split_coords(y_out, coords_out)) + # Update progress for step within sample + if total_samples is not None: + progress = WorkflowProgress( + progress=f"Processing sample {sample + 1}/{total_samples} (seed_fcn3={seed_fcn3}, seed_stormscope={seed_stormscope}), step {ii + 1}/{len(lead_times)}", + current_step=ii + 1, + total_steps=len(lead_times), + ) + self.update_progress(progress) + if ii == (len(lead_times) - 1): break @@ -398,6 +419,7 @@ def __call__( } self.setup_io(io, output_coords, seeds_fcn3, seeds_stormscope) + total_samples = len(seeds_stormscope) sample = 0 for seed_fcn3 in seeds_fcn3: # Generate FCN3 conditioning (z500) @@ -410,6 +432,8 @@ def __call__( seed_fcn3=seed_fcn3, start_time_stormscope=start_time_stormscope, lead_times=lead_times, + current_sample=sample + 1, + total_samples=total_samples, ) self.stormscope.conditioning_data_source = InferenceOutputSource( io_fcn3.root @@ -427,5 +451,6 @@ def __call__( seed_stormscope=seeds_stormscope[sample], lead_times=lead_times, variables=variables, + total_samples=total_samples, ) sample += 1 diff --git a/serve/inferenceserver/api_server/workflow/e2workflow.py b/serve/inferenceserver/api_server/workflow/e2workflow.py index 55af4fbb6..3e52df372 100644 --- a/serve/inferenceserver/api_server/workflow/e2workflow.py +++ b/serve/inferenceserver/api_server/workflow/e2workflow.py @@ -98,6 +98,7 @@ class Earth2Workflow(Workflow, metaclass=AutoParameters): def __init__(self) -> None: super().__init__() + self.execution_id: str | None = None @abstractmethod def __call__(self, io: IOBackend) -> None: @@ -122,6 +123,9 @@ def run( ) -> dict[str, Any]: """Run custom workflow""" + # Store execution_id for use in update_progress + self.execution_id = execution_id + # Validate and convert parameters parameters = self.validate_parameters(parameters) @@ -184,6 +188,36 @@ def run( self.update_execution_data(execution_id, progress) raise + def update_progress(self, progress: WorkflowProgress) -> None: + """ + Update workflow execution progress. + + This method is intended for child workflows to update progress + information during execution. It uses the execution_id stored + during the run() method. + + If execution_id is not set (e.g., when running outside the API server), + this method is a no-op and silently returns without updating progress. + + Parameters + ---------- + progress : WorkflowProgress + WorkflowProgress object containing progress information to update. + + Examples + -------- + >>> progress = WorkflowProgress( + ... progress="Processing data...", + ... current_step=5, + ... total_steps=10 + ... ) + >>> self.update_progress(progress) + """ + if self.execution_id is None: + # No-op when running outside API server context + return + self.update_execution_data(self.execution_id, progress) + logger = logging.getLogger(__name__) @@ -225,7 +259,7 @@ def add_array( progress = WorkflowProgress( current_step=0, total_steps=len(self.progress_coords) ) - self.workflow.update_execution_data(self.execution_id, progress) + self.workflow.update_progress(progress) def write( self, @@ -242,7 +276,7 @@ def write( step_index = self.progress_coords.index(current_coord) # Update progress using WorkflowProgress progress = WorkflowProgress(current_step=step_index + 1) - self.workflow.update_execution_data(self.execution_id, progress) + self.workflow.update_progress(progress) def __getattr__(self, name: str) -> Any: """Allow passthrough of unwrapped attributes.""" From c081df5b13f6d9e5114983d11168267be7256bbe Mon Sep 17 00:00:00 2001 From: Stefan Weissenberger Date: Wed, 4 Mar 2026 13:24:21 +0000 Subject: [PATCH 16/24] fix CRS information --- .../example_workflows/foundry_fcn3.py | 83 ++++----- .../foundry_fcn3_stormscope_goes.py | 161 +++++++++--------- 2 files changed, 122 insertions(+), 122 deletions(-) diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py index 050416459..192f0e190 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py @@ -34,12 +34,10 @@ def __init__( self.fcn3 = self.load_fcn3() self.rng = np.random.default_rng(init_seed) - # TODO: Do not use data cache - self.data = PlanetaryComputerECMWFOpenDataIFS(verbose=False) + self.data = PlanetaryComputerECMWFOpenDataIFS(verbose=False, cache=False) def load_fcn3(self) -> FCN3: logger.info("Loading FCN3") - # Assuming AZUREML_MODEL_DIR == EARTH2STUDIO_CACHE package = FCN3.load_default_package() fcn3 = FCN3.load_model(package) fcn3.to(self.device) @@ -78,31 +76,35 @@ def validate_variables(self, variables: Sequence[str] | None) -> np.ndarray: def setup_io( self, io: IOBackend, output_coords: CoordSystem, seeds: Sequence[int] ) -> None: - if isinstance(io, ZarrBackend): - io.chunks = { - "sample": 1, - "time": 1, - "variable": 1, - } - io.add_array( {k: v for k, v in output_coords.items() if k != "variable"}, output_coords["variable"], ) - # Storing seeds separately makes it easier to filer with Titiler - sample_coords = {"sample": output_coords["sample"]} - io.add_array(sample_coords, "seed", data=torch.tensor(seeds)) + # Storing seeds separately makes it easier to filter with Titiler + e_coords = {"ensemble": output_coords["ensemble"]} + io.add_array(e_coords, "seed", data=torch.tensor(seeds)) + + # Add CRS definition + io.add_array({}, "crs") + io.root["crs"].grid_mapping_name = "latitude_longitude" + io.root["crs"].longitude_of_prime_meridian = 0.0 + io.root["crs"].semi_major_axis = 6378137.0 + io.root["crs"].inverse_flattening = 298.257223563 + + for var in output_coords["variable"]: + io.root[var].grid_mapping = "crs" # Set attributes for automatic parsing of dimensions + io.root["ensemble"].standard_name = "realization" + io.root["time"].standard_name = "time" + io.root["time"].axis = "T" io.root["lat"].standard_name = "latitude" + io.root["lat"].units = "degrees_north" io.root["lat"].axis = "Y" io.root["lon"].standard_name = "longitude" + io.root["lon"].units = "degrees_east" io.root["lon"].axis = "X" - # io.root["time"].standard_name = "time" - # io.root["time"].axis = "T" - - # Planetary Computer does not like grid_mapping, so we skip adding it if isinstance(io, ZarrBackend): zarr.consolidate_metadata(io.store) @@ -142,37 +144,48 @@ def __call__( output_coords = CoordSystem( { - "sample": np.arange(len(seeds)), - # Planetary Computer does not like separate 'lead_time' + "ensemble": np.arange(len(seeds)), + # Combine 'time' and 'lead_time' into single dimension "time": to_time_array([start_time]) + lead_times, "variable": variables, "lat": np.linspace(90.0, -90.0, 721), - "lon": np.linspace(0, 360, 1440, endpoint=False), + "lon": np.linspace(-180, 180, 1440, endpoint=False), } ) self.setup_io(io, output_coords, seeds) logger.info("Starting inference") total_samples = len(seeds) - for si, seed in enumerate(seeds): + n_steps += 1 # add 1 for step 0 (initial conditions) + for sample, seed in enumerate(seeds): self.fcn3.set_rng(seed=seed) iterator = self.fcn3.create_iterator(x_ori.clone(), coords_ori.copy()) - for ii, (x, coords) in enumerate(iterator): - logger.info( - "Processing FCN3 (seed=%d) step %d/%d", - seed, - ii + 1, - len(lead_times), + for step, (x, coords) in enumerate(iterator): + # Update progress for step within sample + msg = ( + f"Processing sample {sample + 1}/{total_samples} " + f"(seed={seed}), step {step + 1}/{len(lead_times)}" ) + progress = WorkflowProgress( + progress=msg, + current_step=step + 1, + total_steps=n_steps, + ) + self.update_progress(progress) + logger.info(msg) + # Select variables x_out, coords_out = map_coords( x, coords, CoordSystem({"variable": output_coords["variable"]}) ) - # Add sample dimension + # Roll longitudes (for raster visualization) + x_out = torch.roll(x_out, 720, dims=-1) + coords_out["lon"] = np.linspace(-180, 180, 1440, endpoint=False) + # Add ensemble dimension x_out = x_out.unsqueeze(0) - coords_out["sample"] = np.array([si]) - coords_out.move_to_end("sample", last=False) + coords_out["ensemble"] = np.array([sample]) + coords_out.move_to_end("ensemble", last=False) # Combine time and lead_time lead_time_dim = list(coords_out).index("lead_time") x_out = x_out.squeeze(lead_time_dim) @@ -181,13 +194,5 @@ def __call__( # Write to disk io.write(*split_coords(x_out, coords_out)) - # Update progress for step within sample - progress = WorkflowProgress( - progress=f"Processing sample {si + 1}/{total_samples} (seed={seed}), step {ii + 1}/{n_steps + 1}", - current_step=ii + 1, - total_steps=n_steps + 1, - ) - self.update_progress(progress) - - if ii == n_steps: + if step == (n_steps - 1): break diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py index 4e111c365..642b0ea89 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py @@ -50,14 +50,12 @@ def __init__( self.stormscope = self.load_stormscope() self.rng = np.random.default_rng(init_seed) - # TODO: Do not use data cache - self.data_fcn3 = PlanetaryComputerECMWFOpenDataIFS(verbose=False) + self.data_fcn3 = PlanetaryComputerECMWFOpenDataIFS(verbose=False, cache=False) scan_mode = "C" - # TODO: Do not use data cache self.data_stormscope = { satellite: PlanetaryComputerGOES( - satellite=satellite, scan_mode=scan_mode, verbose=False + satellite=satellite, scan_mode=scan_mode, verbose=False, cache=False ) for satellite in ["goes16", "goes19"] } @@ -72,7 +70,6 @@ def __init__( def load_fcn3_interp(self) -> InterpModAFNO: logger.info("Loading FCN3") - # Assuming AZUREML_MODEL_DIR == EARTH2STUDIO_CACHE package = FCN3.load_default_package() fcn3 = FCN3.load_model(package) @@ -164,36 +161,40 @@ def setup_io( seeds_fcn3: Sequence[int], seeds_stormscope: Sequence[int], ) -> None: - if isinstance(io, ZarrBackend): - io.chunks = { - "sample": 1, - "time": 1, - "variable": 1, - } - io.add_array( {k: v for k, v in output_coords.items() if k != "variable"}, output_coords["variable"], ) - # Storing seeds separately makes it easier to filer with Titiler - sample_coords = {"sample": output_coords["sample"]} + # Storing seeds separately makes it easier to filter with Titiler + e_coords = {"ensemble": output_coords["ensemble"]} n_stormscope_per_fcn3 = len(seeds_stormscope) // len(seeds_fcn3) tiled_seeds_fcn3 = np.repeat(seeds_fcn3, n_stormscope_per_fcn3) - io.add_array(sample_coords, "seed_fcn3", data=torch.tensor(tiled_seeds_fcn3)) - io.add_array( - sample_coords, "seed_stormscope", data=torch.tensor(seeds_stormscope) - ) + io.add_array(e_coords, "seed_fcn3", data=torch.tensor(tiled_seeds_fcn3)) + io.add_array(e_coords, "seed_stormscope", data=torch.tensor(seeds_stormscope)) - # Set attributes for automatic parsing of dimensions - io.root["lat"].standard_name = "latitude" - io.root["lat"].axis = "Y" - io.root["lon"].standard_name = "longitude" - io.root["lon"].axis = "X" - # io.root["time"].standard_name = "time" - # io.root["time"].axis = "T" + # Add CRS definition + io.add_array({}, "crs") + io.root["crs"].grid_mapping_name = "lambert_conformal_conic" + io.root["crs"].standard_parallel = 38.5 + io.root["crs"].longitude_of_central_meridian = 262.5 + io.root["crs"].latitude_of_projection_origin = 38.5 + io.root["crs"].semi_major_axis = 6371229 + io.root["crs"].semi_minor_axis = 6371229 + + for var in output_coords["variable"]: + io.root[var].grid_mapping = "crs" - # Planetary Computer does not like grid_mapping, so we skip adding it + # Set attributes for automatic parsing of dimensions + io.root["ensemble"].standard_name = "realization" + io.root["time"].standard_name = "time" + io.root["time"].axis = "T" + io.root["y"].standard_name = "projection_y_coordinate" + io.root["y"].units = "m" + io.root["y"].axis = "Y" + io.root["x"].standard_name = "projection_x_coordinate" + io.root["x"].units = "m" + io.root["x"].axis = "X" if isinstance(io, ZarrBackend): zarr.consolidate_metadata(io.store) @@ -248,8 +249,8 @@ def run_fcn3( seed_fcn3: int, start_time_stormscope: datetime, lead_times: np.ndarray, - current_sample: int | None = None, - total_samples: int | None = None, + sample: int, + total_samples: int, ) -> None: # Create z500 conditioning with FCN3 coords_in = self.stormscope.input_coords() @@ -274,16 +275,23 @@ def run_fcn3( self.fcn3_interp.px_model.px_model.set_rng(seed=seed_fcn3) iterator = self.fcn3_interp.create_iterator(x.clone(), coords_x.copy()) - total_steps = model_gap + len(lead_times) - for i, (x, coords_x) in enumerate(iterator): - logger.info( - "Processing FCN3 (seed_fcn3=%d) step %d/%d", - seed_fcn3, - i + 1, - total_steps, + n_steps = model_gap + len(lead_times) + for step, (x, coords_x) in enumerate(iterator): + # Update progress for FCN3 step + msg = ( + f"Processing FCN3 for sample {sample + 1}/{total_samples} " + f"(seed_fcn3={seed_fcn3}) " + f"step {step + 1}/{n_steps}" ) + progress = WorkflowProgress( + progress=msg, + current_step=step + 1, + total_steps=n_steps, + ) + self.update_progress(progress) + logger.info(msg) - if i < model_gap: + if step < model_gap: # Skip initial steps leading up to StormScope start time continue @@ -295,16 +303,7 @@ def run_fcn3( ) io.write(*split_coords(x, coords_x)) - # Update progress for FCN3 step - if current_sample is not None and total_samples is not None: - progress = WorkflowProgress( - progress=f"Processing FCN3 conditioning (seed_fcn3={seed_fcn3}) for sample {current_sample}/{total_samples}, step {i + 1}/{total_steps}", - current_step=i + 1, - total_steps=total_steps, - ) - self.update_progress(progress) - - if (i + 1) == total_steps: + if step == (n_steps - 1): break def run_stormscope( @@ -312,13 +311,29 @@ def run_stormscope( io: IOBackend, y: torch.Tensor, coords_y: CoordSystem, - sample: int, seed_fcn3: int, seed_stormscope: int, lead_times: np.ndarray, variables: np.ndarray, - total_samples: int | None = None, + sample: int, + total_samples: int, ) -> None: + n_steps = len(lead_times) + + def log_progress(step: int) -> None: + msg = ( + f"Processing sample {sample + 1}/{total_samples} " + f"(seed_fcn3={seed_fcn3}, seed_stormscope={seed_stormscope}), " + f"step {step + 1}/{n_steps}" + ) + progress = WorkflowProgress( + progress=msg, + current_step=step + 1, + total_steps=n_steps, + ) + self.update_progress(progress) + logger.info(msg) + def prep_output( y_pred: torch.Tensor, coords_pred: CoordSystem ) -> tuple[torch.Tensor, CoordSystem]: @@ -326,25 +341,18 @@ def prep_output( y_pred, coords_pred, CoordSystem({"variable": variables}) ) del coords_out["batch"] - # Reuse batch dimension as sample dimension (squeeze/unsqueeze) - coords_out["sample"] = np.array([sample]) - coords_out.move_to_end("sample", last=False) + # Reuse batch dimension as ensemble dimension (squeeze/unsqueeze) + coords_out["ensemble"] = np.array([sample]) + coords_out.move_to_end("ensemble", last=False) # Combine time and lead_time lead_time_dim = list(coords_out).index("lead_time") y_out = y_out.squeeze(lead_time_dim) coords_out["time"] = coords_out["time"] + coords_out["lead_time"] del coords_out["lead_time"] - # Rename x, y to lon, lat - mp = {"x": "lon", "y": "lat"} - coords_out = CoordSystem({mp.get(k, k): v for k, v in coords_out.items()}) return y_out, coords_out - logger.info( - "Processing StormScope (seed_fcn3=%d, seed_stormscope=%d) step 1/%d", - seed_fcn3, - seed_stormscope, - len(lead_times), - ) + # Update progress for step within sample + log_progress(0) # Store initial GOES data (identical across seeds) y_out, coords_out = prep_output(y, coords_y) @@ -354,29 +362,16 @@ def prep_output( # Use self.stormscope.sampler_args["randn_like"] once updated torch.manual_seed(seed_stormscope) - for ii in range(1, len(lead_times)): + for step in range(1, n_steps): y_pred, coords_pred = self.stormscope(y, coords_y) - logger.info( - "Processing StormScope (seed_fcn3=%d, seed_stormscope=%d) step %d/%d", - seed_fcn3, - seed_stormscope, - ii + 1, - len(lead_times), - ) + + # Update progress for step within sample + log_progress(step) y_out, coords_out = prep_output(y_pred, coords_pred) io.write(*split_coords(y_out, coords_out)) - # Update progress for step within sample - if total_samples is not None: - progress = WorkflowProgress( - progress=f"Processing sample {sample + 1}/{total_samples} (seed_fcn3={seed_fcn3}, seed_stormscope={seed_stormscope}), step {ii + 1}/{len(lead_times)}", - current_step=ii + 1, - total_steps=len(lead_times), - ) - self.update_progress(progress) - - if ii == (len(lead_times) - 1): + if step == (n_steps - 1): break y, coords_y = self.stormscope.next_input(y_pred, coords_pred, y, coords_y) @@ -410,12 +405,12 @@ def __call__( coords_out = self.stormscope.output_coords(self.stormscope.input_coords()) output_coords = { - "sample": np.arange(len(seeds_stormscope)), + "ensemble": np.arange(len(seeds_stormscope)), # Planetary Computer does not like separate 'lead_time' "time": to_time_array([start_time_stormscope]) + lead_times, "variable": variables, - "lat": coords_out["y"], - "lon": coords_out["x"], + "y": coords_out["y"], + "x": coords_out["x"], } self.setup_io(io, output_coords, seeds_fcn3, seeds_stormscope) @@ -432,7 +427,7 @@ def __call__( seed_fcn3=seed_fcn3, start_time_stormscope=start_time_stormscope, lead_times=lead_times, - current_sample=sample + 1, + sample=sample, total_samples=total_samples, ) self.stormscope.conditioning_data_source = InferenceOutputSource( @@ -446,11 +441,11 @@ def __call__( io=io, y=y_ori.clone(), coords_y=coords_y_ori.copy(), - sample=sample, seed_fcn3=seed_fcn3, seed_stormscope=seeds_stormscope[sample], lead_times=lead_times, variables=variables, + sample=sample, total_samples=total_samples, ) sample += 1 From 52447c100d0a16566fc2da92239372d10e9f542c Mon Sep 17 00:00:00 2001 From: Stefan Weissenberger Date: Wed, 4 Mar 2026 17:58:04 +0000 Subject: [PATCH 17/24] add Planetary Computer utils --- .../planetary_computer/pc_client.py | 234 ++++++++++++++++++ ...plate-collection-fcn3-stormscope-goes.json | 42 ++++ .../template-collection-fcn3.json | 42 ++++ ...template-feature-fcn3-stormscope-goes.json | 54 ++++ .../template-feature-fcn3.json | 54 ++++ serve/inferenceserver/requirements.txt | 1 + 6 files changed, 427 insertions(+) create mode 100644 serve/inferenceserver/api_server/planetary_computer/pc_client.py create mode 100644 serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3-stormscope-goes.json create mode 100644 serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3.json create mode 100644 serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3-stormscope-goes.json create mode 100644 serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3.json diff --git a/serve/inferenceserver/api_server/planetary_computer/pc_client.py b/serve/inferenceserver/api_server/planetary_computer/pc_client.py new file mode 100644 index 000000000..1c64b7bc0 --- /dev/null +++ b/serve/inferenceserver/api_server/planetary_computer/pc_client.py @@ -0,0 +1,234 @@ +import json +import logging +import os +import time +from datetime import datetime, timedelta +from typing import Literal +from uuid import uuid4 + +import requests +from api_server.workflow import WorkflowParameters +from azure.identity import DefaultAzureCredential + +logger = logging.getLogger("planetary_computer") +logger.setLevel(logging.INFO) + +APPLICATION_URL = "https://geocatalog.spatio.azure.com/" +REQUESTS_TIMEOUT = 30 + + +def get_headers() -> dict: + """Get the Azure authorization headers.""" + credential = DefaultAzureCredential() + token = credential.get_token(APPLICATION_URL) + return {"Authorization": f"Bearer {token.token}"} + + +def _create_element(url: str, stac_config: dict, headers: dict) -> None: + """Create a STAC collection or feature and wait for it to finish.""" + response = requests.post( + url, + json=stac_config, + headers=headers, + params={"api-version": "2025-04-30-preview"}, + timeout=REQUESTS_TIMEOUT, + ) + location = response.headers["location"] + + logger.info("Creating '%s'...", stac_config["id"]) + while True: + response = requests.get(location, headers=headers, timeout=REQUESTS_TIMEOUT) + status = response.json()["status"] + logger.info(status) + if status not in {"Pending", "Running"}: + break + time.sleep(5) + + if status == "Finished": + logger.info("Successfully created '%s'", stac_config["id"]) + else: + logger.error("Failed to create '%s': %s", stac_config["id"], response.text) + + +def get_collection_json( + workflow_name: Literal[ + "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" + ], + collection_id: str | None, +) -> dict: + """ + Load the STAC collection template and set the collection ID. + + Args: + workflow_name: Name of the workflow + collection_id: STAC collection ID + + Returns: + STAC config as dict + """ + template_fns = { + "foundry_fcn3_workflow": "template-collection-fcn3.json", + "foundry_fcn3_stormscope_goes_workflow": "template-collection-fcn3-stormscope-goes.json", + } + with open( + os.path.join(os.path.dirname(__file__), template_fns[workflow_name]) + ) as f: + stac_config = json.load(f) + if collection_id is None: + stac_config["id"] = stac_config["id"].format(uuid=uuid4()) + else: + stac_config["id"] = collection_id + return stac_config + + +def get_feature_json( + workflow_name: Literal[ + "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" + ], + start_time: datetime, + end_time: datetime, + blob_url: str, +) -> dict: + """ + Load the STAC feature template and set the workflow parameters. + + Args: + workflow_name: Name of the workflow + start_time: Forecast start time + end_time: Forecast end time + blob_url: Blob location on Azure Blob Storage + + Returns: + STAC config as dict + """ + template_fns = { + "foundry_fcn3_workflow": "template-feature-fcn3.json", + "foundry_fcn3_stormscope_goes_workflow": "template-feature-fcn3-stormscope-goes.json", + } + with open( + os.path.join(os.path.dirname(__file__), template_fns[workflow_name]) + ) as f: + stac_config = json.load(f) + + iso_start = start_time.isoformat() + iso_end = end_time.isoformat() + + stac_config["id"] = stac_config["id"].format( + start_time=iso_start[:13], uuid=uuid4() + ) + stac_config["properties"]["datetime"] = iso_start + stac_config["properties"]["start_datetime"] = iso_end + stac_config["properties"]["end_datetime"] = end_time + stac_config["assets"]["data"]["href"] = blob_url + return stac_config + + +def create_collection( + workflow_name: Literal[ + "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" + ], + geocatalog_url: str, + collection_id: str | None, + headers: dict, +) -> str: + """ + Create a new STAC collection. + + Args: + workflow_name: Name of the workflow + geocatalog_url: URL to the Planetary Computer Pro catalog + collection_id: STAC collection ID + headers: Azure authorization headers + + Returns: + ID of the created collection + """ + stac_config = get_collection_json(workflow_name, collection_id) + _create_element( + url=f"{geocatalog_url}/stac/collections", + stac_config=stac_config, + headers=headers, + ) + return stac_config["id"] + + +def ensure_collection_exists( + workflow_name: Literal[ + "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" + ], + geocatalog_url: str, + collection_id: str, + headers: dict, +) -> str: + """ + Check whether a collection already exists and if not create it. + + Args: + workflow_name: Name of the workflow + geocatalog_url: URL to the Planetary Computer Pro catalog + collection_id: STAC collection ID + headers: Azure authorization headers + + Returns: + ID of the collection + """ + # Check whether collection already exists + response = requests.get( + f"{geocatalog_url}/stac/collections/{collection_id}", + headers=headers, + params={"api-version": "2025-04-30-preview"}, + timeout=REQUESTS_TIMEOUT, + ) + status = response.status_code + if status == 200: + return collection_id + if status != 404: + raise RuntimeError( + f"Failed to retrieve collection: Error {status} - {response.text}" + ) + + # Create new collection + return create_collection(workflow_name, geocatalog_url, collection_id, headers) + + +def create_feature( + workflow_name: Literal[ + "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" + ], + geocatalog_url: str, + collection_id: str | None, + parameters: dict | WorkflowParameters, + blob_url: str, +) -> None: + """ + Ingest a new STAC feature into the collection. + + Args: + workflow_name: Name of the workflow + geocatalog_url: URL to the Planetary Computer Pro catalog + collection_id: STAC collection ID + parameters: Workflow parameters with start time and number of steps + blob_url: Blob location on Azure Blob Storage + """ + headers = get_headers() + + # Make sure the target collection exists + if collection_id is None: + collection_id = create_collection(workflow_name, geocatalog_url, None, headers) + else: + ensure_collection_exists(workflow_name, geocatalog_url, collection_id, headers) + + start_time = parameters["start_time"] + step_sizes = { + # Forecast step size in hours + "foundry_fcn3_workflow": 6, + "foundry_fcn3_stormscope_goes_workflow": 1, + } + end_time = start_time + timedelta(hours=step_sizes[workflow_name]) + stac_config = get_feature_json(workflow_name, start_time, end_time, blob_url) + + _create_element( + url=f"{geocatalog_url}/stac/collections/{collection_id}/items", + stac_config=stac_config, + headers=headers, + ) diff --git a/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3-stormscope-goes.json b/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3-stormscope-goes.json new file mode 100644 index 000000000..62d5205b3 --- /dev/null +++ b/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3-stormscope-goes.json @@ -0,0 +1,42 @@ +{ + "type": "Collection", + "stac_version": "1.0.0", + "id": "earth-2-fcn3-stormscope-goes-{uuid}", + "title": "Earth-2 StormScope-GOES conditioned on FourCastNet3", + "description": "Forecasts generated with the FourCastNet3-conditioned StormScope-GOES workflow on Microsoft Foundry.", + "links": [], + "stac_extensions": [], + "item_assets": { + "data": { + "type": "application/x-netcdf", + "roles": [] + } + }, + "extent": { + "spatial": { + "bbox": [ + [ + -135, + 20, + -60, + 53 + ] + ] + }, + "temporal": { + "interval": [ + [ + null, + null + ] + ] + } + }, + "license": "other", + "keywords": [ + "CONUS", + "Forecast", + "Earth-2" + ], + "providers": [] +} diff --git a/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3.json b/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3.json new file mode 100644 index 000000000..21fc63b56 --- /dev/null +++ b/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3.json @@ -0,0 +1,42 @@ +{ + "type": "Collection", + "stac_version": "1.0.0", + "id": "earth-2-fcn3-{uuid}", + "title": "Earth-2 FourCastNet3", + "description": "Forecasts generated with the FourCastNet3 workflow on Microsoft Foundry.", + "links": [], + "stac_extensions": [], + "item_assets": { + "data": { + "type": "application/x-netcdf", + "roles": [] + } + }, + "extent": { + "spatial": { + "bbox": [ + [ + -180, + -90, + 180, + 90 + ] + ] + }, + "temporal": { + "interval": [ + [ + null, + null + ] + ] + } + }, + "license": "other", + "keywords": [ + "Global", + "Forecast", + "Earth-2" + ], + "providers": [] +} diff --git a/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3-stormscope-goes.json b/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3-stormscope-goes.json new file mode 100644 index 000000000..3a8d389f9 --- /dev/null +++ b/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3-stormscope-goes.json @@ -0,0 +1,54 @@ +{ + "type": "Feature", + "stac_version": "1.1.0", + "id": "fcn3-stormscope-goes-{start_time}-{uuid}", + "stac_extensions": [], + "geometry": { + "type": "Polygon", + "coordinates": [ + [ + [ + -60, + 20 + ], + [ + -60, + 53 + ], + [ + -135, + 53 + ], + [ + -135, + 20 + ], + [ + -60, + 20 + ] + ] + ] + }, + "bbox": [ + -135, + 20, + -60, + 53 + ], + "properties": { + "datetime": "{start_time}", + "start_datetime": "{start_time}", + "end_datetime": "{end_time}" + }, + "links": [], + "assets": { + "data": { + "href": "{blob_url}", + "type": "application/x-netcdf", + "title": "StormScope-GOES forecast conditioned on FourCastNet3", + "description": "FourCastNet3-conditioned StormScope-GOES forecast from {start_time} to {end_time}.", + "roles": [] + } + } +} diff --git a/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3.json b/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3.json new file mode 100644 index 000000000..38fb9a801 --- /dev/null +++ b/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3.json @@ -0,0 +1,54 @@ +{ + "type": "Feature", + "stac_version": "1.1.0", + "id": "fcn3-{start_time}-{uuid}", + "stac_extensions": [], + "geometry": { + "type": "Polygon", + "coordinates": [ + [ + [ + 180, + -90 + ], + [ + 180, + 90 + ], + [ + -180, + 90 + ], + [ + -180, + -90 + ], + [ + 180, + -90 + ] + ] + ] + }, + "bbox": [ + -180, + -90, + 180, + 90 + ], + "properties": { + "datetime": "{start_time}", + "start_datetime": "{start_time}", + "end_datetime": "{end_time}" + }, + "links": [], + "assets": { + "data": { + "href": "{blob_url}", + "type": "application/x-netcdf", + "title": "FourCastNet3 forecast", + "description": "FourCastNet3 forecast from {start_time} to {end_time}.", + "roles": [] + } + } +} diff --git a/serve/inferenceserver/requirements.txt b/serve/inferenceserver/requirements.txt index e53074912..65646deea 100644 --- a/serve/inferenceserver/requirements.txt +++ b/serve/inferenceserver/requirements.txt @@ -32,6 +32,7 @@ cryptography>=41.0.0 multi-storage-client[azure-storage-blob] # Azure Blob Storage for SAS token generation azure-storage-blob>=12.19.0 +azure-identity # Development dependencies pytest>=7.0.0 From 31049b55e063fdc9eeae182b8d8eb94b3484172e Mon Sep 17 00:00:00 2001 From: Stefan Weissenberger Date: Thu, 5 Mar 2026 13:56:31 +0000 Subject: [PATCH 18/24] add default render options --- .../planetary_computer/pc_client.py | 536 +++++++++++------- 1 file changed, 330 insertions(+), 206 deletions(-) diff --git a/serve/inferenceserver/api_server/planetary_computer/pc_client.py b/serve/inferenceserver/api_server/planetary_computer/pc_client.py index 1c64b7bc0..773a03b16 100644 --- a/serve/inferenceserver/api_server/planetary_computer/pc_client.py +++ b/serve/inferenceserver/api_server/planetary_computer/pc_client.py @@ -3,6 +3,7 @@ import os import time from datetime import datetime, timedelta +from time import perf_counter from typing import Literal from uuid import uuid4 @@ -13,222 +14,345 @@ logger = logging.getLogger("planetary_computer") logger.setLevel(logging.INFO) -APPLICATION_URL = "https://geocatalog.spatio.azure.com/" -REQUESTS_TIMEOUT = 30 - - -def get_headers() -> dict: - """Get the Azure authorization headers.""" - credential = DefaultAzureCredential() - token = credential.get_token(APPLICATION_URL) - return {"Authorization": f"Bearer {token.token}"} - - -def _create_element(url: str, stac_config: dict, headers: dict) -> None: - """Create a STAC collection or feature and wait for it to finish.""" - response = requests.post( - url, - json=stac_config, - headers=headers, - params={"api-version": "2025-04-30-preview"}, - timeout=REQUESTS_TIMEOUT, - ) - location = response.headers["location"] - - logger.info("Creating '%s'...", stac_config["id"]) - while True: - response = requests.get(location, headers=headers, timeout=REQUESTS_TIMEOUT) - status = response.json()["status"] - logger.info(status) - if status not in {"Pending", "Running"}: - break - time.sleep(5) - - if status == "Finished": - logger.info("Successfully created '%s'", stac_config["id"]) - else: - logger.error("Failed to create '%s': %s", stac_config["id"], response.text) - - -def get_collection_json( - workflow_name: Literal[ - "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" - ], - collection_id: str | None, -) -> dict: - """ - Load the STAC collection template and set the collection ID. - - Args: - workflow_name: Name of the workflow - collection_id: STAC collection ID - Returns: - STAC config as dict - """ - template_fns = { - "foundry_fcn3_workflow": "template-collection-fcn3.json", - "foundry_fcn3_stormscope_goes_workflow": "template-collection-fcn3-stormscope-goes.json", - } - with open( - os.path.join(os.path.dirname(__file__), template_fns[workflow_name]) - ) as f: - stac_config = json.load(f) - if collection_id is None: - stac_config["id"] = stac_config["id"].format(uuid=uuid4()) - else: - stac_config["id"] = collection_id - return stac_config - - -def get_feature_json( - workflow_name: Literal[ - "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" - ], - start_time: datetime, - end_time: datetime, - blob_url: str, -) -> dict: +class PlanetaryComputerClient: """ - Load the STAC feature template and set the workflow parameters. + Simple client for the interaction with Planetary Computer. - Args: - workflow_name: Name of the workflow - start_time: Forecast start time - end_time: Forecast end time - blob_url: Blob location on Azure Blob Storage - - Returns: - STAC config as dict - """ - template_fns = { - "foundry_fcn3_workflow": "template-feature-fcn3.json", - "foundry_fcn3_stormscope_goes_workflow": "template-feature-fcn3-stormscope-goes.json", - } - with open( - os.path.join(os.path.dirname(__file__), template_fns[workflow_name]) - ) as f: - stac_config = json.load(f) - - iso_start = start_time.isoformat() - iso_end = end_time.isoformat() - - stac_config["id"] = stac_config["id"].format( - start_time=iso_start[:13], uuid=uuid4() - ) - stac_config["properties"]["datetime"] = iso_start - stac_config["properties"]["start_datetime"] = iso_end - stac_config["properties"]["end_datetime"] = end_time - stac_config["assets"]["data"]["href"] = blob_url - return stac_config - - -def create_collection( - workflow_name: Literal[ - "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" - ], - geocatalog_url: str, - collection_id: str | None, - headers: dict, -) -> str: - """ - Create a new STAC collection. + The official SDK does not work as documented, hence this implementation. Args: - workflow_name: Name of the workflow - geocatalog_url: URL to the Planetary Computer Pro catalog - collection_id: STAC collection ID - headers: Azure authorization headers - - Returns: - ID of the created collection - """ - stac_config = get_collection_json(workflow_name, collection_id) - _create_element( - url=f"{geocatalog_url}/stac/collections", - stac_config=stac_config, - headers=headers, - ) - return stac_config["id"] - - -def ensure_collection_exists( - workflow_name: Literal[ - "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" - ], - geocatalog_url: str, - collection_id: str, - headers: dict, -) -> str: + workflow_name: Name of the Earth2Studio workflow """ - Check whether a collection already exists and if not create it. - Args: - workflow_name: Name of the workflow - geocatalog_url: URL to the Planetary Computer Pro catalog - collection_id: STAC collection ID - headers: Azure authorization headers + APPLICATION_URL = "https://geocatalog.spatio.azure.com/" + REQUESTS_TIMEOUT = 30 + CREATION_TIMEOUT = 120 + + def __init__( + self, + workflow_name: Literal[ + "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" + ], + ): + self.workflow_name = workflow_name + self.headers: dict | None = None + + def update_headers(self) -> None: + """ + Get the Azure authorization headers. + """ + credential = DefaultAzureCredential() + token = credential.get_token(self.APPLICATION_URL) + self.headers = {"Authorization": f"Bearer {token.token}"} + + def _get(self, url: str) -> requests.Response: + return requests.get( + url, + headers=self.headers, + params={"api-version": "2025-04-30-preview"}, + timeout=self.REQUESTS_TIMEOUT, + ) - Returns: - ID of the collection - """ - # Check whether collection already exists - response = requests.get( - f"{geocatalog_url}/stac/collections/{collection_id}", - headers=headers, - params={"api-version": "2025-04-30-preview"}, - timeout=REQUESTS_TIMEOUT, - ) - status = response.status_code - if status == 200: - return collection_id - if status != 404: - raise RuntimeError( - f"Failed to retrieve collection: Error {status} - {response.text}" + def _post(self, url: str, body: dict | None = None) -> requests.Response: + return requests.post( + url, + json=body, + headers=self.headers, + params={"api-version": "2025-04-30-preview"}, + timeout=self.REQUESTS_TIMEOUT, ) - # Create new collection - return create_collection(workflow_name, geocatalog_url, collection_id, headers) + def _put(self, url: str, body: dict | None = None) -> requests.Response: + return requests.put( + url, + json=body, + headers=self.headers, + params={"api-version": "2025-04-30-preview"}, + timeout=self.REQUESTS_TIMEOUT, + ) + def _create_element(self, url: str, stac_config: dict) -> None: + """ + Create a STAC collection or feature and wait for it to finish. + """ + response = self._post( + url, + body=stac_config, + ) + location = response.headers["location"] + + logger.info("Creating '%s'...", stac_config["id"]) + start = perf_counter() + while True: + if (perf_counter() - start) > self.CREATION_TIMEOUT: + logger.error("Creation of '%s' timed out", stac_config["id"]) + return + + response = self._get(location) + status = response.json()["status"] + logger.info(status) + if status not in {"Pending", "Running"}: + break + time.sleep(5) + + if status == "Succeeded": + logger.info("Successfully created '%s'", stac_config["id"]) + else: + logger.error("Failed to create '%s': %s", stac_config["id"], response.text) + + def _get_collection_json(self, collection_id: str | None) -> dict: + """ + Load the STAC collection template and set the collection ID. + + Args: + collection_id: STAC collection ID + + Returns: + STAC config as dict + """ + template_fns = { + "foundry_fcn3_workflow": "template-collection-fcn3.json", + "foundry_fcn3_stormscope_goes_workflow": "template-collection-fcn3-stormscope-goes.json", + } + template_fn = os.path.join( + os.path.dirname(__file__), template_fns[self.workflow_name] + ) + with open(template_fn) as f: + stac_config = json.load(f) + + if collection_id is None: + stac_config["id"] = stac_config["id"].format(uuid=uuid4()) + else: + stac_config["id"] = collection_id + return stac_config + + def _get_feature_json( + self, + start_time: datetime, + end_time: datetime, + blob_url: str, + ) -> dict: + """ + Load the STAC feature template and set the workflow parameters. + + Args: + start_time: Forecast start time + end_time: Forecast end time + blob_url: Blob location on Azure Blob Storage + + Returns: + STAC config as dict + """ + template_fns = { + "foundry_fcn3_workflow": "template-feature-fcn3.json", + "foundry_fcn3_stormscope_goes_workflow": "template-feature-fcn3-stormscope-goes.json", + } + template_fn = os.path.join( + os.path.dirname(__file__), template_fns[self.workflow_name] + ) + with open(template_fn) as f: + stac_config = json.load(f) -def create_feature( - workflow_name: Literal[ - "foundry_fcn3_workflow", "foundry_fcn3_stormscope_goes_workflow" - ], - geocatalog_url: str, - collection_id: str | None, - parameters: dict | WorkflowParameters, - blob_url: str, -) -> None: - """ - Ingest a new STAC feature into the collection. + iso_start = start_time.isoformat() + iso_end = end_time.isoformat() - Args: - workflow_name: Name of the workflow - geocatalog_url: URL to the Planetary Computer Pro catalog - collection_id: STAC collection ID - parameters: Workflow parameters with start time and number of steps - blob_url: Blob location on Azure Blob Storage - """ - headers = get_headers() - - # Make sure the target collection exists - if collection_id is None: - collection_id = create_collection(workflow_name, geocatalog_url, None, headers) - else: - ensure_collection_exists(workflow_name, geocatalog_url, collection_id, headers) - - start_time = parameters["start_time"] - step_sizes = { - # Forecast step size in hours - "foundry_fcn3_workflow": 6, - "foundry_fcn3_stormscope_goes_workflow": 1, - } - end_time = start_time + timedelta(hours=step_sizes[workflow_name]) - stac_config = get_feature_json(workflow_name, start_time, end_time, blob_url) - - _create_element( - url=f"{geocatalog_url}/stac/collections/{collection_id}/items", - stac_config=stac_config, - headers=headers, - ) + stac_config["id"] = stac_config["id"].format( + start_time=iso_start[:13], uuid=uuid4() + ) + stac_config["properties"]["datetime"] = iso_start + stac_config["properties"]["start_datetime"] = iso_end + stac_config["properties"]["end_datetime"] = iso_end + stac_config["assets"]["data"]["href"] = blob_url + return stac_config + + def _update_tile_settings(self, geocatalog_url: str, collection_id: str) -> None: + """ + Update 'minZoom' of the tile settings so user can zoom out. + + Args: + geocatalog_url: URL to the Planetary Computer Pro catalog + collection_id: STAC collection ID + """ + tile_settings = { + "minZoom": 0, + "maxItemsPerTile": 35, + } + response = self._put( + f"{geocatalog_url}/stac/collections/{collection_id}/configurations/tile-settings", + body=tile_settings, + ) + status = response.status_code + if status not in {200, 201}: + logger.error( + f"Could not update tile settings: Error {status} - {response.text}" + ) + + def _update_render_options( + self, + geocatalog_url: str, + collection_id: str, + ) -> None: + """ + Add some example render options for a new collection. + + Args: + geocatalog_url: URL to the Planetary Computer Pro catalog + collection_id: STAC collection ID + """ + if self.workflow_name == "foundry_fcn3_workflow": + render_params = [ + { + "id": "t2m", + "scale": [263, 313], + "cmap": "balance", + }, + { + "id": "t850", + "scale": [263, 313], + "cmap": "balance", + }, + { + "id": "u10m", + "scale": [-20, 20], + "cmap": "prgn", + }, + { + "id": "v10m", + "scale": [-20, 20], + "cmap": "prgn", + }, + { + "id": "z500", + "scale": [45000, 60000], + "cmap": "viridis", + }, + ] + elif self.workflow_name == "foundry_fcn3_stormscope_goes_workflow": + render_params = [ + { + "id": f"abi{aid:02}c", + "scale": [0, 1], + "cmap": "plasma", + } + for aid in [1, 2, 3, 7, 8, 9, 10, 13] + ] + + for params in render_params: + render_option = { + "id": f"auto-{params['id']}", + "name": params["id"], + "type": "raster-tile", + "options": ( + f"assets=data&subdataset_name={params['id']}" + "&sel=time=2100-01-01&sel=ensemble=0&sel_method=nearest" + f"&rescale={params['scale'][0]},{params['scale'][1]}" + f"&colormap_name={params['cmap']}" + ), + "minZoom": 0, + } + response = self._post( + f"{geocatalog_url}/stac/collections/{collection_id}/configurations/render-options", + body=render_option, + ) + status = response.status_code + if status not in {200, 201}: + logger.error( + f"Could not update render options: Error {status} - {response.text}" + ) + + def _create_collection( + self, + geocatalog_url: str, + collection_id: str | None, + ) -> str: + """ + Create a new STAC collection. + + Args: + geocatalog_url: URL to the Planetary Computer Pro catalog + collection_id: STAC collection ID + + Returns: + ID of the created collection + """ + stac_config = self._get_collection_json(collection_id) + self._create_element( + url=f"{geocatalog_url}/stac/collections", + stac_config=stac_config, + ) + self._update_tile_settings(geocatalog_url, stac_config["id"]) + self._update_render_options(geocatalog_url, stac_config["id"]) + return stac_config["id"] + + def _ensure_collection_exists( + self, + geocatalog_url: str, + collection_id: str, + ) -> str: + """ + Check whether a collection already exists and if not create it. + + Args: + geocatalog_url: URL to the Planetary Computer Pro catalog + collection_id: STAC collection ID + + Returns: + ID of the collection + """ + # Check whether collection already exists + response = self._get(f"{geocatalog_url}/stac/collections/{collection_id}") + status = response.status_code + if status == 200: + return collection_id + if status != 404: + raise RuntimeError( + f"Failed to retrieve collection: Error {status} - {response.text}" + ) + + # Create new collection + return self._create_collection(geocatalog_url, collection_id) + + def create_feature( + self, + geocatalog_url: str, + collection_id: str | None, + parameters: dict | WorkflowParameters, + blob_url: str, + ) -> tuple[str, str]: + """ + Ingest a new STAC feature into the collection. + + Args: + workflow_name: Name of the workflow + geocatalog_url: URL to the Planetary Computer Pro catalog + collection_id: STAC collection ID + parameters: Workflow parameters with start time and number of steps + blob_url: Blob location on Azure Blob Storage + + Returns: + Tuple of collection ID and feature ID + """ + self.update_headers() + + # Make sure the target collection exists + if collection_id is None: + collection_id = self._create_collection(geocatalog_url, None) + else: + self._ensure_collection_exists(geocatalog_url, collection_id) + + start_time = parameters["start_time"] + step_sizes = { + # Forecast step size in hours + "foundry_fcn3_workflow": 6, + "foundry_fcn3_stormscope_goes_workflow": 1, + } + end_time = start_time + timedelta(hours=step_sizes[self.workflow_name]) + stac_config = self._get_feature_json(start_time, end_time, blob_url) + + self._create_element( + url=f"{geocatalog_url}/stac/collections/{collection_id}/items", + stac_config=stac_config, + ) + + return collection_id, stac_config["id"] From 3cfd3059061952f258b0fa28536423fefc80bf8a Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Thu, 5 Mar 2026 16:28:22 -0800 Subject: [PATCH 19/24] add support for azure managed identity --- pyproject.toml | 1 + serve/inferenceserver/api_server/config.py | 3 + .../inferenceserver/api_server/cpu_worker.py | 3 + .../api_server/object_storage.py | 101 ++++++++++++------ serve/inferenceserver/requirements.txt | 3 +- uv.lock | 44 ++++++++ 6 files changed, 122 insertions(+), 33 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index ad67f08e4..bac01edbb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -107,6 +107,7 @@ serve = [ "cryptography>=41.0.0", "multi-storage-client[azure-storage-blob]", "azure-storage-blob>=12.19.0", + "azure-identity>=1.15.0", ] # PX Models ace2 = [ diff --git a/serve/inferenceserver/api_server/config.py b/serve/inferenceserver/api_server/config.py index a6b836bf0..e1d8c4bc8 100644 --- a/serve/inferenceserver/api_server/config.py +++ b/serve/inferenceserver/api_server/config.py @@ -436,6 +436,9 @@ def _apply_env_overrides(self) -> None: self._config.object_storage.azure_container_name = os.getenv( "AZURE_CONTAINER_NAME" ) + # Support AZURE_ENDPOINT_URL for managed identity scenarios + if os.getenv("AZURE_ENDPOINT_URL"): + self._config.object_storage.endpoint_url = os.getenv("AZURE_ENDPOINT_URL") # Workflow exposure overrides if os.getenv("EXPOSED_WORKFLOWS"): diff --git a/serve/inferenceserver/api_server/cpu_worker.py b/serve/inferenceserver/api_server/cpu_worker.py index 268730010..007aa0434 100644 --- a/serve/inferenceserver/api_server/cpu_worker.py +++ b/serve/inferenceserver/api_server/cpu_worker.py @@ -639,6 +639,9 @@ def process_object_storage_upload( storage_kwargs["azure_container_name"] = ( config.object_storage.azure_container_name ) + # Support endpoint_url for Azure (useful for managed identity) + if config.object_storage.endpoint_url: + storage_kwargs["endpoint_url"] = config.object_storage.endpoint_url try: storage = MSCObjectStorage(**storage_kwargs) diff --git a/serve/inferenceserver/api_server/object_storage.py b/serve/inferenceserver/api_server/object_storage.py index 9d18205cc..7961df4ff 100644 --- a/serve/inferenceserver/api_server/object_storage.py +++ b/serve/inferenceserver/api_server/object_storage.py @@ -175,7 +175,9 @@ class MSCObjectStorage(ObjectStorage): - AWS_SESSION_TOKEN (optional) - AWS_DEFAULT_REGION - For Azure, credentials can be provided via connection string or account name/key. + For Azure, credentials can be provided via: + - Connection string (AzureCredentials): Provide azure_connection_string + - Managed Identity (DefaultAzureCredentials): Omit azure_connection_string and provide endpoint_url or azure_account_name See: https://nvidia.github.io/multi-storage-client/user_guide/rust.html """ @@ -213,7 +215,7 @@ def __init__( access_key_id: AWS access key ID (sets AWS_ACCESS_KEY_ID env var). secret_access_key: AWS secret access key (sets AWS_SECRET_ACCESS_KEY env var). session_token: AWS session token for temporary credentials. - endpoint_url: Custom endpoint URL (for S3-compatible services). + endpoint_url: Custom endpoint URL (for S3-compatible services or Azure Blob Storage). use_transfer_acceleration: Enable S3 Transfer Acceleration (bucket must have it enabled). max_concurrency: Maximum number of concurrent transfers (default: 16). multipart_chunksize: Chunk size for multipart uploads in bytes (default: 8MB). @@ -222,10 +224,16 @@ def __init__( cloudfront_domain: CloudFront distribution domain for signed URLs. cloudfront_key_pair_id: CloudFront key pair ID for signed URLs. cloudfront_private_key: PEM private key content as string. - azure_connection_string: Azure connection string. - azure_account_name: Azure storage account name. + azure_connection_string: Azure connection string (optional if using managed identity). + azure_account_name: Azure storage account name (required if using managed identity without endpoint_url). azure_account_key: Azure storage account key (optional for SAS token generation). azure_container_name: Azure container name. + + Note: + For Azure with managed identity (DefaultAzureCredentials): + - Omit azure_connection_string to use managed identity + - Provide endpoint_url or azure_account_name to determine the storage endpoint + - Example: endpoint_url="https://account.blob.core.windows.net" """ self.storage_type = storage_type self.bucket = bucket @@ -267,34 +275,48 @@ def __init__( # Azure-specific configuration elif storage_type == "azure": - # Connection string is mandatory for Azure - if not azure_connection_string: - raise ObjectStorageError( - "Azure connection string is required. " - "Please provide azure_connection_string." - ) - self.azure_container_name = azure_container_name or bucket self.azure_account_key = azure_account_key - # Set Azure connection string - os.environ["AZURE_CONNECTION_STRING"] = azure_connection_string + # Determine if using managed identity (DefaultAzureCredentials) + # Managed identity is used when connection string is not provided + self.use_managed_identity = azure_connection_string is None - # Extract account name from connection string if not provided directly - if not azure_account_name: - self.azure_account_name = None - # Connection string format: DefaultEndpointsProtocol=https;AccountName=...;AccountKey=... - for part in azure_connection_string.split(";"): - if part.startswith("AccountName="): - self.azure_account_name = part.split("=", 1)[1] - break - if not self.azure_account_name: + if self.use_managed_identity: + # Using managed identity - connection string not needed + logger.info( + "Using Azure Managed Identity (DefaultAzureCredentials). " + f"Account: {azure_account_name or 'will be determined from endpoint'}, " + f"Container: {self.azure_container_name}" + ) + self.azure_account_name = azure_account_name + else: + # Using connection string authentication + # At this point, azure_connection_string is guaranteed to be not None + # (since use_managed_identity is False only when azure_connection_string is not None) + if azure_connection_string is None: raise ObjectStorageError( - "Could not extract account name from connection string. " - "Please provide azure_account_name directly or ensure connection string contains AccountName." + "Connection string required for non-managed identity mode" ) - else: - self.azure_account_name = azure_account_name + + # Set Azure connection string + os.environ["AZURE_CONNECTION_STRING"] = azure_connection_string + + # Extract account name from connection string if not provided directly + if not azure_account_name: + self.azure_account_name = None + # Connection string format: DefaultEndpointsProtocol=https;AccountName=...;AccountKey=... + for part in azure_connection_string.split(";"): + if part.startswith("AccountName="): + self.azure_account_name = part.split("=", 1)[1] + break + if not self.azure_account_name: + raise ObjectStorageError( + "Could not extract account name from connection string. " + "Please provide azure_account_name directly or ensure connection string contains AccountName." + ) + else: + self.azure_account_name = azure_account_name else: raise ValueError( f"Unsupported storage_type: {storage_type}. Must be 's3' or 'azure'." @@ -346,11 +368,14 @@ def __init__( } elif storage_type == "azure": # Build the Azure storage provider options - # Derive endpoint URL from connection string or account name + # Derive endpoint URL from endpoint_url parameter, connection string, or account name azure_endpoint_url = None - # First, try to extract BlobEndpoint directly from connection string - if azure_connection_string: + # First, check if endpoint_url was provided directly (for managed identity or custom endpoints) + if endpoint_url: + azure_endpoint_url = endpoint_url.rstrip("/") + # Then, try to extract BlobEndpoint directly from connection string + elif azure_connection_string: for part in azure_connection_string.split(";"): if part.startswith("BlobEndpoint="): azure_endpoint_url = part.split("=", 1)[1].rstrip("/") @@ -376,11 +401,14 @@ def __init__( if not account_name: raise ObjectStorageError( "Azure endpoint_url cannot be determined. " - "Please provide azure_connection_string (with AccountName or BlobEndpoint) " + "Please provide endpoint_url, azure_connection_string (with AccountName or BlobEndpoint), " "or azure_account_name." ) azure_endpoint_url = f"https://{account_name}.blob.{endpoint_suffix}" + logger.info( + f"Constructed Azure endpoint URL from account name: {azure_endpoint_url}" + ) azure_storage_provider_options = { "base_path": self.azure_container_name, @@ -399,8 +427,17 @@ def __init__( } } - # Add Azure credentials provider if connection string is provided - if azure_connection_string: + # Add Azure credentials provider + if self.use_managed_identity: + # Use DefaultAzureCredentials for managed identity + profile_config["profiles"][self.profile_name][ + "credentials_provider" + ] = { + "type": "DefaultAzureCredentials", + "options": {}, + } + elif azure_connection_string: + # Use AzureCredentials with connection string profile_config["profiles"][self.profile_name][ "credentials_provider" ] = { diff --git a/serve/inferenceserver/requirements.txt b/serve/inferenceserver/requirements.txt index 65646deea..6429289e5 100644 --- a/serve/inferenceserver/requirements.txt +++ b/serve/inferenceserver/requirements.txt @@ -32,7 +32,8 @@ cryptography>=41.0.0 multi-storage-client[azure-storage-blob] # Azure Blob Storage for SAS token generation azure-storage-blob>=12.19.0 -azure-identity +# Azure Identity for managed identity authentication +azure-identity>=1.15.0 # Development dependencies pytest>=7.0.0 diff --git a/uv.lock b/uv.lock index e7764e4fd..a3c21b447 100644 --- a/uv.lock +++ b/uv.lock @@ -342,6 +342,22 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/42/23/6371a551800d3812d6019cd813acd985f9fac0fedc1290129211a73da4ae/azure_core-1.38.2-py3-none-any.whl", hash = "sha256:074806c75cf239ea284a33a66827695ef7aeddac0b4e19dda266a93e4665ead9", size = 217957 }, ] +[[package]] +name = "azure-identity" +version = "1.25.2" +source = { registry = "https://pypi.org/simple" } +dependencies = [ + { name = "azure-core" }, + { name = "cryptography" }, + { name = "msal" }, + { name = "msal-extensions" }, + { name = "typing-extensions" }, +] +sdist = { url = "https://files.pythonhosted.org/packages/c2/3a/439a32a5e23e45f6a91f0405949dc66cfe6834aba15a430aebfc063a81e7/azure_identity-1.25.2.tar.gz", hash = "sha256:030dbaa720266c796221c6cdbd1999b408c079032c919fef725fcc348a540fe9", size = 284709 } +wheels = [ + { url = "https://files.pythonhosted.org/packages/9b/77/f658c76f9e9a52c784bd836aaca6fd5b9aae176f1f53273e758a2bcda695/azure_identity-1.25.2-py3-none-any.whl", hash = "sha256:1b40060553d01a72ba0d708b9a46d0f61f56312e215d8896d836653ffdc6753d", size = 191423 }, +] + [[package]] name = "azure-storage-blob" version = "12.28.0" @@ -1874,6 +1890,7 @@ precip-afno-v2 = [ ] serve = [ { name = "aiofiles" }, + { name = "azure-identity" }, { name = "azure-storage-blob" }, { name = "cryptography" }, { name = "fastapi" }, @@ -1979,6 +1996,7 @@ requires-dist = [ { name = "anemoi-models", marker = "extra == 'aifs'", specifier = "==0.5.1" }, { name = "anemoi-models", marker = "extra == 'aifsens'", specifier = "==0.5.1" }, { name = "anemoi-models", marker = "extra == 'all'", specifier = "==0.5.1" }, + { name = "azure-identity", marker = "extra == 'serve'", specifier = ">=1.15.0" }, { name = "azure-storage-blob", marker = "extra == 'serve'", specifier = ">=12.19.0" }, { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'all'", git = "https://github.com/NVlabs/cBottle.git?rev=1d4435abe730d6b966e983633b466b345d60ac78" }, { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'cbottle'", git = "https://github.com/NVlabs/cBottle.git?rev=1d4435abe730d6b966e983633b466b345d60ac78" }, @@ -4398,6 +4416,32 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/43/e3/7d92a15f894aa0c9c4b49b8ee9ac9850d6e63b03c9c32c0367a13ae62209/mpmath-1.3.0-py3-none-any.whl", hash = "sha256:a0b2b9fe80bbcd81a6647ff13108738cfb482d481d826cc0e02f5b35e5c88d2c", size = 536198 }, ] +[[package]] +name = "msal" +version = "1.35.1" +source = { registry = "https://pypi.org/simple" } +dependencies = [ + { name = "cryptography" }, + { name = "pyjwt", extra = ["crypto"] }, + { name = "requests" }, +] +sdist = { url = "https://files.pythonhosted.org/packages/3c/aa/5a646093ac218e4a329391d5a31e5092a89db7d2ef1637a90b82cd0b6f94/msal-1.35.1.tar.gz", hash = "sha256:70cac18ab80a053bff86219ba64cfe3da1f307c74b009e2da57ef040eb1b5656", size = 165658 } +wheels = [ + { url = "https://files.pythonhosted.org/packages/96/86/16815fddf056ca998853c6dc525397edf0b43559bb4073a80d2bc7fe8009/msal-1.35.1-py3-none-any.whl", hash = "sha256:8f4e82f34b10c19e326ec69f44dc6b30171f2f7098f3720ea8a9f0c11832caa3", size = 119909 }, +] + +[[package]] +name = "msal-extensions" +version = "1.3.1" +source = { registry = "https://pypi.org/simple" } +dependencies = [ + { name = "msal" }, +] +sdist = { url = "https://files.pythonhosted.org/packages/01/99/5d239b6156eddf761a636bded1118414d161bd6b7b37a9335549ed159396/msal_extensions-1.3.1.tar.gz", hash = "sha256:c5b0fd10f65ef62b5f1d62f4251d51cbcaf003fcedae8c91b040a488614be1a4", size = 23315 } +wheels = [ + { url = "https://files.pythonhosted.org/packages/5e/75/bd9b7bb966668920f06b200e84454c8f3566b102183bc55c5473d96cb2b9/msal_extensions-1.3.1-py3-none-any.whl", hash = "sha256:96d3de4d034504e969ac5e85bae8106c8373b5c6568e4c8fa7af2eca9dbe6bca", size = 20583 }, +] + [[package]] name = "msgpack" version = "1.1.2" From 6aafb442b6b66d0ffc20f19cd5532621ff0d08de Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Mon, 9 Mar 2026 11:18:00 -0700 Subject: [PATCH 20/24] initial integration with azure pc --- .../api_server/conf/config.yaml | 2 + serve/inferenceserver/api_server/config.py | 9 + .../inferenceserver/api_server/cpu_worker.py | 199 ++++++++++++++++++ serve/inferenceserver/api_server/main.py | 1 + serve/inferenceserver/api_server/utils.py | 18 +- .../scripts/start_api_server.sh | 28 ++- serve/inferenceserver/scripts/status.sh | 2 +- .../scripts/stop_api_server.sh | 4 + 8 files changed, 257 insertions(+), 6 deletions(-) diff --git a/serve/inferenceserver/api_server/conf/config.yaml b/serve/inferenceserver/api_server/conf/config.yaml index 2f123bbde..bab0788dc 100644 --- a/serve/inferenceserver/api_server/conf/config.yaml +++ b/serve/inferenceserver/api_server/conf/config.yaml @@ -36,6 +36,7 @@ worker: num_workers: 1 # The number of RQ inference workers to create by default zip_num_workers: 1 # The number of RQ workers for result_zip queue objstore_num_workers: 1 # The number of RQ workers for object_storage queue + geocatalog_num_workers: 1 # The number of RQ workers for geocatalog_ingestion queue (used when AZURE_GEOCATALOG_URL is set) finalize_num_workers: 1 # The number of RQ workers for finalize_metadata queue paths: @@ -94,6 +95,7 @@ object_storage: azure_account_name: null azure_account_key: null azure_container_name: null + azure_geocatalog_url: null # When set, triggers Planetary Computer ingestion after Azure upload workflow_exposure: # List of workflow names to expose via API endpoints diff --git a/serve/inferenceserver/api_server/config.py b/serve/inferenceserver/api_server/config.py index e1d8c4bc8..fc1f86fee 100644 --- a/serve/inferenceserver/api_server/config.py +++ b/serve/inferenceserver/api_server/config.py @@ -57,6 +57,7 @@ class QueueConfig: name: str = "inference" result_zip_queue_name: str = "result_zip" object_storage_queue_name: str = "object_storage" + geocatalog_ingestion_queue_name: str = "geocatalog_ingestion" finalize_metadata_queue_name: str = "finalize_metadata" max_size: int = 10 default_timeout: str = "1h" @@ -143,6 +144,10 @@ class ObjectStorageConfig: azure_container_name: str | None = ( None # Azure container name (falls back to bucket if not set) ) + # Azure Planetary Computer / GeoCatalog ingestion (optional) + azure_geocatalog_url: str | None = ( + None # When set, triggers PC ingestion after upload + ) @dataclass @@ -439,6 +444,10 @@ def _apply_env_overrides(self) -> None: # Support AZURE_ENDPOINT_URL for managed identity scenarios if os.getenv("AZURE_ENDPOINT_URL"): self._config.object_storage.endpoint_url = os.getenv("AZURE_ENDPOINT_URL") + if os.getenv("AZURE_GEOCATALOG_URL"): + self._config.object_storage.azure_geocatalog_url = os.getenv( + "AZURE_GEOCATALOG_URL" + ) # Workflow exposure overrides if os.getenv("EXPOSED_WORKFLOWS"): diff --git a/serve/inferenceserver/api_server/cpu_worker.py b/serve/inferenceserver/api_server/cpu_worker.py index 007aa0434..3f2517d94 100644 --- a/serve/inferenceserver/api_server/cpu_worker.py +++ b/serve/inferenceserver/api_server/cpu_worker.py @@ -25,6 +25,7 @@ "create_results_zip", "process_result_zip", "process_object_storage_upload", + "process_geocatalog_ingestion", "process_finalize_metadata", ] @@ -760,6 +761,23 @@ def process_object_storage_upload( storage_info["remote_path"] = ( f"azure://{container_name}/{remote_prefix}" ) + # Build HTTPS blob URL for primary netcdf file (for GeoCatalog ingestion) + if ( + config.object_storage.azure_account_name + and config.object_storage.azure_geocatalog_url + ): + primary_nc = None + if output_path.is_file() and output_path.suffix.lower() == ".nc": + primary_nc = output_path.name + elif output_path.is_dir(): + nc_files = sorted(output_path.rglob("*.nc")) + if nc_files: + primary_nc = nc_files[0].relative_to(output_path).as_posix() + if primary_nc: + storage_info["blob_url"] = ( + f"https://{config.object_storage.azure_account_name}.blob.core.windows.net/" + f"{container_name}/{remote_prefix}/{primary_nc}" + ) if signed_url: storage_info["signed_url"] = signed_url @@ -815,6 +833,187 @@ def process_object_storage_upload( ) +def process_geocatalog_ingestion( + workflow_name: str, + execution_id: str, +) -> dict[str, Any] | None: + """ + RQ Worker function to trigger ingestion of uploaded inference results into + Azure Planetary Computer / GeoCatalog when AZURE_GEOCATALOG_URL is configured. + + This function is intended to be executed by the CPU worker from the + geocatalog_ingestion_queue, after process_object_storage_upload. It reads + storage info and parameters from Redis and calls the Planetary Computer + client to create a STAC feature for the uploaded netcdf blob. + + Args: + workflow_name: Name of the workflow + execution_id: Execution ID of the workflow + + Returns: + Dict containing result info, None on critical failure + """ + request_id = f"{workflow_name}:{execution_id}" + logger.info(f"Processing geocatalog ingestion for {request_id}") + + try: + geocatalog_url = config.object_storage.azure_geocatalog_url + if not geocatalog_url: + logger.warning( + f"AZURE_GEOCATALOG_URL not set, skipping geocatalog ingestion for {request_id}" + ) + job_id = queue_next_stage( + redis_client=redis_client, + current_stage="geocatalog_ingestion", + workflow_name=workflow_name, + execution_id=execution_id, + output_path_str="", + ) + if not job_id: + return fail_workflow( + workflow_name, + execution_id, + f"Failed to queue finalize_metadata for {request_id}", + ) + return { + "success": True, + "skipped": True, + "reason": "AZURE_GEOCATALOG_URL not set", + } + + storage_info_key = f"inference_request:{request_id}:storage_info" + metadata_key = get_inference_request_metadata_key(request_id) + storage_info_json = redis_client.get(storage_info_key) + pending_metadata_json = redis_client.get(metadata_key) + + if not storage_info_json or not pending_metadata_json: + logger.warning( + f"Storage info or pending metadata missing for {request_id}, skipping geocatalog ingestion" + ) + job_id = queue_next_stage( + redis_client=redis_client, + current_stage="geocatalog_ingestion", + workflow_name=workflow_name, + execution_id=execution_id, + output_path_str="", + ) + if not job_id: + return fail_workflow( + workflow_name, + execution_id, + f"Failed to queue finalize_metadata for {request_id}", + ) + return { + "success": True, + "skipped": True, + "reason": "missing storage/metadata", + } + + storage_info = json.loads(storage_info_json) + metadata_dict = json.loads(pending_metadata_json) + blob_url = storage_info.get("blob_url") + parameters = metadata_dict.get("parameters") or {} + + if not blob_url: + logger.warning( + f"No blob_url in storage info for {request_id} (e.g. not Azure or no .nc file), skipping geocatalog ingestion" + ) + job_id = queue_next_stage( + redis_client=redis_client, + current_stage="geocatalog_ingestion", + workflow_name=workflow_name, + execution_id=execution_id, + output_path_str="", + ) + if not job_id: + return fail_workflow( + workflow_name, + execution_id, + f"Failed to queue finalize_metadata for {request_id}", + ) + return {"success": True, "skipped": True, "reason": "no blob_url"} + + # Only trigger PC ingestion for workflows supported by PlanetaryComputerClient + _PC_SUPPORTED_WORKFLOWS = ( + "foundry_fcn3_workflow", + "foundry_fcn3_stormscope_goes_workflow", + ) + if workflow_name not in _PC_SUPPORTED_WORKFLOWS: + logger.info( + f"Workflow {workflow_name} not supported by Planetary Computer client, skipping ingestion for {request_id}" + ) + job_id = queue_next_stage( + redis_client=redis_client, + current_stage="geocatalog_ingestion", + workflow_name=workflow_name, + execution_id=execution_id, + output_path_str="", + ) + if not job_id: + return fail_workflow( + workflow_name, + execution_id, + f"Failed to queue finalize_metadata for {request_id}", + ) + return { + "success": True, + "skipped": True, + "reason": "workflow not supported", + } + + # Normalize parameters for pc_client: start_time must be datetime + if "start_time" in parameters: + st = parameters["start_time"] + if isinstance(st, str): + # ISO format: allow 'Z' suffix + normalized = st.replace("Z", "+00:00") + parameters = dict(parameters) + parameters["start_time"] = datetime.fromisoformat(normalized) + + try: + from api_server.planetary_computer.pc_client import PlanetaryComputerClient + + pc_client = PlanetaryComputerClient(workflow_name) + pc_client.create_feature( + geocatalog_url=geocatalog_url, + collection_id=None, + parameters=parameters, + blob_url=blob_url, + ) + logger.info(f"GeoCatalog ingestion completed for {request_id}") + except Exception as e: + # Log but do not fail the pipeline; finalize_metadata should still run + logger.exception( + f"GeoCatalog ingestion failed for {request_id}: {e}. Queuing finalize_metadata anyway." + ) + + job_id = queue_next_stage( + redis_client=redis_client, + current_stage="geocatalog_ingestion", + workflow_name=workflow_name, + execution_id=execution_id, + output_path_str="", + ) + if not job_id: + return fail_workflow( + workflow_name, + execution_id, + f"Failed to queue next pipeline stage for {request_id}", + ) + logger.info( + f"Queued finalize_metadata for {workflow_name}:{execution_id} with RQ job ID: {job_id}" + ) + return {"success": True} + + except Exception as e: + logger.exception(f"Failed in geocatalog ingestion for {request_id}") + return fail_workflow( + workflow_name, + execution_id, + f"Geocatalog ingestion failed for {request_id}: {str(e)}", + ) + + def process_finalize_metadata( workflow_name: str, execution_id: str, diff --git a/serve/inferenceserver/api_server/main.py b/serve/inferenceserver/api_server/main.py index 96f7146b6..96905a618 100644 --- a/serve/inferenceserver/api_server/main.py +++ b/serve/inferenceserver/api_server/main.py @@ -92,6 +92,7 @@ def check_admission_control() -> None: config.queue.name, config.queue.result_zip_queue_name, config.queue.object_storage_queue_name, + config.queue.geocatalog_ingestion_queue_name, config.queue.finalize_metadata_queue_name, ] for queue_name in queue_names: diff --git a/serve/inferenceserver/api_server/utils.py b/serve/inferenceserver/api_server/utils.py index 1901ca0ad..2c6d725df 100644 --- a/serve/inferenceserver/api_server/utils.py +++ b/serve/inferenceserver/api_server/utils.py @@ -196,7 +196,7 @@ async def create_file_stream( # Pipeline Stage Utilities # ============================================================================= -Stage = Literal["inference", "result_zip", "object_storage"] +Stage = Literal["inference", "result_zip", "object_storage", "geocatalog_ingestion"] def queue_next_stage( @@ -211,12 +211,12 @@ def queue_next_stage( Queue the next pipeline stage based on configuration. Pipeline flow: - - If result_zip_enabled: inference -> result_zip -> object_storage (if enabled) -> finalize - - If not result_zip_enabled: inference -> object_storage (if enabled) -> finalize + - If result_zip_enabled: inference -> result_zip -> object_storage (if enabled) -> [geocatalog_ingestion (if AZURE_GEOCATALOG_URL)] -> finalize + - If not result_zip_enabled: inference -> object_storage (if enabled) -> [geocatalog_ingestion (if AZURE_GEOCATALOG_URL)] -> finalize Args: redis_client: Redis client for queue connection - current_stage: The stage that just completed ("inference", "result_zip", "object_storage") + current_stage: The stage that just completed ("inference", "result_zip", "object_storage", "geocatalog_ingestion") workflow_name: Name of the workflow execution_id: Execution ID of the workflow output_path_str: Path to the output files @@ -257,6 +257,16 @@ def queue_next_stage( args = (workflow_name, execution_id) elif current_stage == "object_storage": + if config.object_storage.azure_geocatalog_url: + next_queue = "geocatalog_ingestion" + next_func = "api_server.cpu_worker.process_geocatalog_ingestion" + args = (workflow_name, execution_id) + else: + next_queue = "finalize_metadata" + next_func = "api_server.cpu_worker.process_finalize_metadata" + args = (workflow_name, execution_id) + + elif current_stage == "geocatalog_ingestion": next_queue = "finalize_metadata" next_func = "api_server.cpu_worker.process_finalize_metadata" args = (workflow_name, execution_id) diff --git a/serve/inferenceserver/scripts/start_api_server.sh b/serve/inferenceserver/scripts/start_api_server.sh index a53bf7cd1..ca92db083 100755 --- a/serve/inferenceserver/scripts/start_api_server.sh +++ b/serve/inferenceserver/scripts/start_api_server.sh @@ -54,6 +54,7 @@ if [ -f "$CONFIG_FILE" ]; then CONFIG_ZIP_NUM_WORKERS=$(read_config "worker.zip_num_workers") CONFIG_OBJSTORE_NUM_WORKERS=$(read_config "worker.objstore_num_workers") CONFIG_FINALIZE_NUM_WORKERS=$(read_config "worker.finalize_num_workers") + CONFIG_GEOCATALOG_NUM_WORKERS=$(read_config "worker.geocatalog_num_workers") CONFIG_PERSISTENT_WORKER=$(read_config "worker.persistent") fi @@ -63,10 +64,11 @@ REDIS_HOST=${3:-${CONFIG_REDIS_HOST:-localhost}} # Default Redis host NUM_RQ_WORKERS=${4:-${CONFIG_RQ_NUM_WORKERS:-1}} # Default to 1 RQ workers NUM_ZIP_WORKERS=${5:-${CONFIG_ZIP_NUM_WORKERS:-1}} # Default to 1 workers for result_zip queue NUM_OBJSTORE_WORKERS=${CONFIG_OBJSTORE_NUM_WORKERS:-1} # Default to 1 object storage worker +NUM_GEOCATALOG_WORKERS=${CONFIG_GEOCATALOG_NUM_WORKERS:-1} # Default to 1 geocatalog ingestion worker NUM_FINALIZE_WORKERS=${CONFIG_FINALIZE_NUM_WORKERS:-1} # Default to 1 finalize metadata worker PERSISTENT_WORKER=${CONFIG_PERSISTENT_WORKER:-false} -echo "Starting Earth2Studio with $NUM_WORKERS API workers, $NUM_RQ_WORKERS RQ workers, $NUM_ZIP_WORKERS zip workers, $NUM_OBJSTORE_WORKERS object storage workers, and $NUM_FINALIZE_WORKERS finalize workers on port $API_PORT..." +echo "Starting Earth2Studio with $NUM_WORKERS API workers, $NUM_RQ_WORKERS RQ workers, $NUM_ZIP_WORKERS zip workers, $NUM_OBJSTORE_WORKERS object storage workers, $NUM_GEOCATALOG_WORKERS geocatalog workers, and $NUM_FINALIZE_WORKERS finalize workers on port $API_PORT..." echo "Configuration: Redis=$REDIS_HOST, Persistent Worker=$PERSISTENT_WORKER" # Function to cleanup on exit @@ -103,6 +105,12 @@ cleanup() { pkill -f "rq.*worker.*object_storage" fi + # Stop all geocatalog ingestion workers + if pgrep -f "rq.*worker.*geocatalog_ingestion" > /dev/null; then + echo "Stopping geocatalog ingestion workers..." + pkill -f "rq.*worker.*geocatalog_ingestion" + fi + # Stop all finalize metadata workers if pgrep -f "rq.*worker.*finalize_metadata" > /dev/null; then echo "Stopping finalize metadata workers..." @@ -157,6 +165,15 @@ for i in $(seq 1 $NUM_OBJSTORE_WORKERS); do echo "Started object storage worker $i (PID: $!)" done +# Start geocatalog ingestion workers (used when AZURE_GEOCATALOG_URL is set) +echo "Starting $NUM_GEOCATALOG_WORKERS geocatalog ingestion workers..." +GEOCATALOG_WORKER_PIDS=() +for i in $(seq 1 $NUM_GEOCATALOG_WORKERS); do + CUDA_VISIBLE_DEVICES="" rq worker -w rq.worker.SimpleWorker geocatalog_ingestion & + GEOCATALOG_WORKER_PIDS+=($!) + echo "Started geocatalog ingestion worker $i (PID: $!)" +done + # Start finalize metadata workers echo "Starting $NUM_FINALIZE_WORKERS finalize metadata workers..." FINALIZE_WORKER_PIDS=() @@ -202,6 +219,13 @@ if [ "$OBJSTORE_WORKER_COUNT" -eq 0 ]; then exit 1 fi +# Check if geocatalog ingestion workers are running +GEOCATALOG_WORKER_COUNT=$(pgrep -f "rq.*worker.*geocatalog_ingestion" | wc -l) +if [ "$GEOCATALOG_WORKER_COUNT" -eq 0 ]; then + echo "Failed to start geocatalog ingestion workers..." + exit 1 +fi + # Check if finalize metadata workers are running FINALIZE_WORKER_COUNT=$(pgrep -f "rq.*worker.*finalize_metadata" | wc -l) if [ "$FINALIZE_WORKER_COUNT" -eq 0 ]; then @@ -221,12 +245,14 @@ echo "Uvicorn PID: $UVICORN_PID" echo "RQ Worker PIDs: ${RQ_WORKER_PIDS[*]}" echo "Zip Worker PIDs: ${ZIP_WORKER_PIDS[*]}" echo "Object Storage Worker PIDs: ${OBJSTORE_WORKER_PIDS[*]}" +echo "Geocatalog Ingestion Worker PIDs: ${GEOCATALOG_WORKER_PIDS[*]}" echo "Finalize Metadata Worker PIDs: ${FINALIZE_WORKER_PIDS[*]}" echo "Cleanup Daemon PID: $CLEANUP_DAEMON_PID" echo "Active API workers: $API_WORKER_COUNT" echo "Active RQ inference workers: $RQ_WORKER_COUNT" echo "Active zip workers: $ZIP_WORKER_COUNT" echo "Active object storage workers: $OBJSTORE_WORKER_COUNT" +echo "Active geocatalog ingestion workers: $GEOCATALOG_WORKER_COUNT" echo "Active finalize metadata workers: $FINALIZE_WORKER_COUNT" echo "API available at http://localhost:$API_PORT" echo "API docs at http://localhost:$API_PORT/docs" diff --git a/serve/inferenceserver/scripts/status.sh b/serve/inferenceserver/scripts/status.sh index d99a58185..5fc56b48c 100755 --- a/serve/inferenceserver/scripts/status.sh +++ b/serve/inferenceserver/scripts/status.sh @@ -65,7 +65,7 @@ fi echo "" # Check RQ workers status per queue -RQ_QUEUES=("inference" "result_zip" "object_storage" "finalize_metadata") +RQ_QUEUES=("inference" "result_zip" "object_storage" "geocatalog_ingestion" "finalize_metadata") RQ_ALL_OK=1 echo "RQ Workers:" diff --git a/serve/inferenceserver/scripts/stop_api_server.sh b/serve/inferenceserver/scripts/stop_api_server.sh index b160c922a..fc612450f 100755 --- a/serve/inferenceserver/scripts/stop_api_server.sh +++ b/serve/inferenceserver/scripts/stop_api_server.sh @@ -33,6 +33,10 @@ pkill -f "rq.*worker.*result_zip" echo "Stopping object storage workers..." pkill -f "rq.*worker.*object_storage" +# Stop geocatalog ingestion workers +echo "Stopping geocatalog ingestion workers..." +pkill -f "rq.*worker.*geocatalog_ingestion" + # Stop finalize metadata workers echo "Stopping finalize metadata workers..." pkill -f "rq.*worker.*finalize_metadata" From dc6e63aacd75d88371a0fb23c367ae8bfac514a9 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Wed, 11 Mar 2026 16:13:12 -0700 Subject: [PATCH 21/24] e2e works on azure --- pyproject.toml | 2 +- .../inferenceserver/api_server/cpu_worker.py | 10 +------ .../planetary_computer/pc_client.py | 30 +++++++++++++++++-- serve/inferenceserver/requirements.txt | 2 +- uv.lock | 27 ++++++++--------- 5 files changed, 43 insertions(+), 28 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index bac01edbb..e9d82c3fd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -105,7 +105,7 @@ serve = [ "hydra-core>=1.3.0", # Object storage related "cryptography>=41.0.0", - "multi-storage-client[azure-storage-blob]", + "multi-storage-client>=0.44.0", "azure-storage-blob>=12.19.0", "azure-identity>=1.15.0", ] diff --git a/serve/inferenceserver/api_server/cpu_worker.py b/serve/inferenceserver/api_server/cpu_worker.py index 3f2517d94..99ac82099 100644 --- a/serve/inferenceserver/api_server/cpu_worker.py +++ b/serve/inferenceserver/api_server/cpu_worker.py @@ -933,6 +933,7 @@ def process_geocatalog_ingestion( ) return {"success": True, "skipped": True, "reason": "no blob_url"} + logger.info(f"Blob URL: {blob_url}") # Only trigger PC ingestion for workflows supported by PlanetaryComputerClient _PC_SUPPORTED_WORKFLOWS = ( "foundry_fcn3_workflow", @@ -961,15 +962,6 @@ def process_geocatalog_ingestion( "reason": "workflow not supported", } - # Normalize parameters for pc_client: start_time must be datetime - if "start_time" in parameters: - st = parameters["start_time"] - if isinstance(st, str): - # ISO format: allow 'Z' suffix - normalized = st.replace("Z", "+00:00") - parameters = dict(parameters) - parameters["start_time"] = datetime.fromisoformat(normalized) - try: from api_server.planetary_computer.pc_client import PlanetaryComputerClient diff --git a/serve/inferenceserver/api_server/planetary_computer/pc_client.py b/serve/inferenceserver/api_server/planetary_computer/pc_client.py index 773a03b16..7ff5703ae 100644 --- a/serve/inferenceserver/api_server/planetary_computer/pc_client.py +++ b/serve/inferenceserver/api_server/planetary_computer/pc_client.py @@ -27,7 +27,7 @@ class PlanetaryComputerClient: APPLICATION_URL = "https://geocatalog.spatio.azure.com/" REQUESTS_TIMEOUT = 30 - CREATION_TIMEOUT = 120 + CREATION_TIMEOUT = 300 def __init__( self, @@ -313,6 +313,32 @@ def _ensure_collection_exists( # Create new collection return self._create_collection(geocatalog_url, collection_id) + def _resolve_start_time(self, parameters: dict) -> datetime: + """ + Resolve start_time from workflow parameters. + foundry_fcn3_workflow uses 'start_time'; foundry_fcn3_stormscope_goes_workflow uses 'start_time_stormscope'. + """ + raw: datetime | str | None = None + if self.workflow_name == "foundry_fcn3_workflow": + raw = parameters.get("start_time") + elif self.workflow_name == "foundry_fcn3_stormscope_goes_workflow": + raw = parameters.get("start_time_stormscope") + else: + raise ValueError(f"Unsupported workflow name: {self.workflow_name}") + if raw is None: + raise ValueError( + f"Missing start time in parameters for workflow {self.workflow_name}. " + "Expected 'start_time' or (for stormscope) 'start_time_stormscope'." + ) + if isinstance(raw, str): + normalized = raw.replace("Z", "+00:00") + return datetime.fromisoformat(normalized) + if isinstance(raw, datetime): + return raw + if hasattr(raw, "isoformat"): + return datetime.fromisoformat(raw.isoformat()) + raise TypeError(f"start_time must be str or datetime, got {type(raw)}") + def create_feature( self, geocatalog_url: str, @@ -341,7 +367,7 @@ def create_feature( else: self._ensure_collection_exists(geocatalog_url, collection_id) - start_time = parameters["start_time"] + start_time = self._resolve_start_time(parameters) step_sizes = { # Forecast step size in hours "foundry_fcn3_workflow": 6, diff --git a/serve/inferenceserver/requirements.txt b/serve/inferenceserver/requirements.txt index 6429289e5..30815a96e 100644 --- a/serve/inferenceserver/requirements.txt +++ b/serve/inferenceserver/requirements.txt @@ -29,7 +29,7 @@ hydra-core>=1.3.0 cryptography>=41.0.0 # Multi-Storage Client with Azure support -multi-storage-client[azure-storage-blob] +multi-storage-client>=0.44.0 # Azure Blob Storage for SAS token generation azure-storage-blob>=12.19.0 # Azure Identity for managed identity authentication diff --git a/uv.lock b/uv.lock index a3c21b447..e83b710f9 100644 --- a/uv.lock +++ b/uv.lock @@ -1897,7 +1897,7 @@ serve = [ { name = "hiredis" }, { name = "httpx" }, { name = "hydra-core" }, - { name = "multi-storage-client", extra = ["azure-storage-blob"] }, + { name = "multi-storage-client" }, { name = "prometheus-client" }, { name = "pydantic" }, { name = "python-dotenv" }, @@ -2076,7 +2076,7 @@ requires-dist = [ { name = "moviepy", marker = "extra == 'all'" }, { name = "moviepy", marker = "extra == 'fcn3'" }, { name = "moviepy", marker = "extra == 'sfno'" }, - { name = "multi-storage-client", extras = ["azure-storage-blob"], marker = "extra == 'serve'" }, + { name = "multi-storage-client", marker = "extra == 'serve'", specifier = ">=0.44.0" }, { 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insertions(+), 1 deletion(-) diff --git a/serve/inferenceserver/api_server/planetary_computer/pc_client.py b/serve/inferenceserver/api_server/planetary_computer/pc_client.py index 7ff5703ae..e27016a6b 100644 --- a/serve/inferenceserver/api_server/planetary_computer/pc_client.py +++ b/serve/inferenceserver/api_server/planetary_computer/pc_client.py @@ -161,9 +161,12 @@ def _get_feature_json( start_time=iso_start[:13], uuid=uuid4() ) stac_config["properties"]["datetime"] = iso_start - stac_config["properties"]["start_datetime"] = iso_end + stac_config["properties"]["start_datetime"] = iso_start stac_config["properties"]["end_datetime"] = iso_end stac_config["assets"]["data"]["href"] = blob_url + stac_config["assets"]["data"]["description"] = stac_config["assets"]["data"][ + "description" + ].format(start_time=iso_start, end_time=iso_end) return stac_config def _update_tile_settings(self, geocatalog_url: str, collection_id: str) -> None: From 8750f5a161138e57a9897b1810cd29f36234a924 Mon Sep 17 00:00:00 2001 From: Ramu Ramamurthy Date: Thu, 12 Mar 2026 14:15:13 -0700 Subject: [PATCH 23/24] merge upstream/main --- .cursor/rules/e2s-000-python-style-guide.mdc | 12 + .cursor/rules/e2s-002-api-documentation.mdc | 1 + .cursor/rules/e2s-009-prognostic-models.mdc | 2 + .github/ISSUE_TEMPLATE/bug_report.yml | 2 +- .github/ISSUE_TEMPLATE/chore.yml | 59 + .../ISSUE_TEMPLATE/documentation_request.yml | 2 +- .github/ISSUE_TEMPLATE/feature_request.yml | 2 +- .gitlab-ci.yml | 64 +- CHANGELOG.md | 15 + Makefile | 2 +- docs/conf.py | 3 +- docs/modules/models.rst | 25 + docs/templates/dataassim.rst | 23 + docs/userguide/about/install.md | 62 +- earth2studio/data/__init__.py | 2 +- earth2studio/data/ufs.py | 7 - earth2studio/data/utils.py | 144 +- earth2studio/data/xr.py | 22 + earth2studio/io/zarr.py | 3 +- earth2studio/models/da/__init__.py | 18 + earth2studio/models/da/base.py | 188 + earth2studio/models/da/interp.py | 589 ++ earth2studio/models/da/sda_stormcast.py | 914 ++ earth2studio/models/da/utils.py | 167 + earth2studio/models/dx/cbottle_sr.py | 7 +- earth2studio/models/dx/corrdiff.py | 19 +- earth2studio/models/dx/corrdiff_cmip6.py | 16 +- earth2studio/models/nn/afno_ssrd.py | 2 +- earth2studio/models/nn/atlas.py | 17 +- earth2studio/models/nn/stormscope_util.py | 17 +- earth2studio/models/px/aifsens.py | 5 +- earth2studio/models/px/cbottle_video.py | 12 +- earth2studio/models/px/dlesym.py | 2 +- earth2studio/models/px/fcn.py | 24 +- .../models/px/graphcast_operational.py | 105 +- earth2studio/models/px/graphcast_small.py | 107 +- earth2studio/models/px/stormcast.py | 21 +- earth2studio/models/px/stormscope.py | 2 +- earth2studio/perturbation/gaussian.py | 18 +- earth2studio/perturbation/spherical.py | 12 +- earth2studio/run.py | 13 +- earth2studio/serve/client/__init__.py | 15 + earth2studio/serve/client/client.py | 550 + earth2studio/serve/client/e2client.py | 479 + earth2studio/serve/client/exceptions.py | 137 + earth2studio/serve/client/fsspec_utils.py | 302 + earth2studio/serve/client/models.py | 314 + .../serve/server}/__init__.py | 30 +- .../serve/server}/cleanup_daemon.py | 84 +- .../serve/server}/config.py | 39 +- .../serve/server}/cpu_worker.py | 25 +- .../serve/server}/e2workflow.py | 12 +- .../serve/server}/main.py | 261 +- .../serve/server}/object_storage.py | 207 +- .../serve/server}/utils.py | 16 +- .../serve/server}/worker.py | 68 +- .../serve/server}/workflow.py | 433 +- earth2studio/utils/coords.py | 409 +- earth2studio/utils/time.py | 63 +- earth2studio/utils/type.py | 9 + examples/16_cbottle_super_resolution.py | 1 + examples/21_stormcast_sda.py | 488 + pyproject.toml | 95 +- recipes/hens/cfg/storm_bernd.yaml | 2 +- recipes/hens/src/hens_ensemble.py | 13 +- recipes/hens/src/hens_utilities.py | 50 - recipes/s2s/src/s2s_ensemble.py | 24 +- recipes/s2s/src/s2s_utilities.py | 51 +- serve/Dockerfile | 29 +- .../__init__.py => client/Makefile} | 20 +- serve/client/README.md | 442 + serve/client/examples/basic_forecast.py | 116 + serve/client/examples/diagnostic_analysis.py | 155 + serve/client/examples/downscaled_forecast.py | 128 + serve/client/pyproject.toml | 88 + serve/client/requirements.txt | 14 + serve/{inferenceserver => server}/Makefile | 2 +- serve/{inferenceserver => server}/README.md | 4 +- .../README_earth2workflows.md | 2 +- .../README_object_storage.md | 0 .../README_workflows.md | 10 +- .../api_server => server}/conf/config.yaml | 0 .../api_server => server}/conf/profiles.json | 0 .../api_server => server}/conf/workflows.yaml | 0 serve/{inferenceserver => server}/env.example | 0 .../example_workflows/__init__.py | 0 .../deterministic_earth2_workflow.py | 2 +- .../example_workflows/deterministic_fcn.py | 2 +- .../deterministic_workflow.py | 2 +- .../example_workflows/diagnostic_workflow.py | 2 +- .../example_user_workflow.py | 2 +- .../example_workflows/foundry_fcn3.py | 2 +- .../foundry_fcn3_stormscope_goes.py | 20 +- .../stormcast_fcn3_workflow.py | 2 +- .../{inferenceserver => server}/openapi.yaml | 0 .../planetary_computer/pc_client.py | 0 ...plate-collection-fcn3-stormscope-goes.json | 0 .../template-collection-fcn3.json | 0 ...template-feature-fcn3-stormscope-goes.json | 0 .../template-feature-fcn3.json | 0 .../requirements.txt | 4 + .../scripts/profile_workflow.sh | 0 .../scripts/redis.conf | 0 .../scripts/start_api_server.sh | 21 +- .../scripts/start_redis.sh | 0 .../scripts/startup.sh | 20 +- .../scripts/status.sh | 2 +- .../scripts/stop_api_server.sh | 2 +- .../scripts/stop_redis.sh | 0 .../{ => server}/test/unit/test_e2workflow.py | 89 +- .../test/unit/test_e2workflow_params.py | 65 +- test/Dockerfile | 2 +- test/data/test_data_utils.py | 181 +- test/data/test_goes.py | 1 + test/models/da/test_da_interp.py | 359 + test/models/da/test_da_sda_stormcast.py | 537 + test/models/da/test_utils.py | 204 + test/models/px/test_ace2.py | 2 + test/models/px/test_aurora.py | 6 +- test/models/px/test_dxwrapper.py | 1 + test/models/px/test_fcn.py | 1 - test/models/px/test_graphcast.py | 27 +- test/serve/client/conftest.py | 135 + test/serve/client/test_client.py | 444 + test/serve/client/test_e2client.py | 663 ++ test/serve/client/test_fsspec_utils.py | 378 + test/serve/conftest.py | 112 - test/serve/server/conftest.py | 88 + test/serve/server/test_cleanup_daemon.py | 775 ++ test/serve/{ => server}/test_config.py | 30 +- test/serve/server/test_cpu_worker.py | 1403 +++ test/serve/server/test_object_storage.py | 294 + test/serve/server/test_server_main.py | 2132 ++++ test/serve/server/test_utils.py | 266 + test/serve/server/test_worker.py | 241 + test/serve/{ => server}/test_workflow.py | 45 +- test/serve/test_cleanup_daemon.py | 502 - test/serve/test_cpu_worker.py | 743 -- test/serve/test_main.py | 1213 --- test/utils/test_coords.py | 446 +- tox-full.ini | 2 + tox.ini | 25 +- uv.lock | 8991 +++++++++-------- 143 files changed, 20408 insertions(+), 7992 deletions(-) create mode 100644 .github/ISSUE_TEMPLATE/chore.yml create mode 100644 docs/templates/dataassim.rst create mode 100644 earth2studio/models/da/__init__.py create mode 100644 earth2studio/models/da/base.py create mode 100644 earth2studio/models/da/interp.py create mode 100644 earth2studio/models/da/sda_stormcast.py create mode 100644 earth2studio/models/da/utils.py create mode 100644 earth2studio/serve/client/__init__.py create mode 100644 earth2studio/serve/client/client.py create mode 100644 earth2studio/serve/client/e2client.py create mode 100644 earth2studio/serve/client/exceptions.py create mode 100644 earth2studio/serve/client/fsspec_utils.py create mode 100644 earth2studio/serve/client/models.py rename {serve/inferenceserver/api_server/workflow => earth2studio/serve/server}/__init__.py (62%) rename {serve/inferenceserver/api_server => earth2studio/serve/server}/cleanup_daemon.py (82%) rename {serve/inferenceserver/api_server => earth2studio/serve/server}/config.py (95%) rename {serve/inferenceserver/api_server => earth2studio/serve/server}/cpu_worker.py (98%) rename {serve/inferenceserver/api_server/workflow => earth2studio/serve/server}/e2workflow.py (97%) rename {serve/inferenceserver/api_server => earth2studio/serve/server}/main.py (83%) rename {serve/inferenceserver/api_server => earth2studio/serve/server}/object_storage.py (90%) rename {serve/inferenceserver/api_server => earth2studio/serve/server}/utils.py (94%) rename {serve/inferenceserver/api_server => earth2studio/serve/server}/worker.py (79%) rename {serve/inferenceserver/api_server/workflow => earth2studio/serve/server}/workflow.py (75%) create mode 100644 examples/21_stormcast_sda.py rename serve/{inferenceserver/api_server/__init__.py => client/Makefile} (65%) create mode 100644 serve/client/README.md create mode 100644 serve/client/examples/basic_forecast.py create mode 100644 serve/client/examples/diagnostic_analysis.py create mode 100644 serve/client/examples/downscaled_forecast.py create mode 100644 serve/client/pyproject.toml create mode 100644 serve/client/requirements.txt rename serve/{inferenceserver => server}/Makefile (96%) rename serve/{inferenceserver => server}/README.md (99%) rename serve/{inferenceserver => server}/README_earth2workflows.md (98%) rename serve/{inferenceserver => server}/README_object_storage.md (100%) rename serve/{inferenceserver => server}/README_workflows.md (98%) rename serve/{inferenceserver/api_server => server}/conf/config.yaml (100%) rename serve/{inferenceserver/api_server => server}/conf/profiles.json (100%) rename serve/{inferenceserver/api_server => server}/conf/workflows.yaml (100%) rename serve/{inferenceserver => server}/env.example (100%) rename serve/{inferenceserver/api_server => server}/example_workflows/__init__.py (100%) rename serve/{inferenceserver/api_server => server}/example_workflows/deterministic_earth2_workflow.py (96%) rename serve/{inferenceserver/api_server => server}/example_workflows/deterministic_fcn.py (99%) rename serve/{inferenceserver/api_server => server}/example_workflows/deterministic_workflow.py (99%) rename serve/{inferenceserver/api_server => server}/example_workflows/diagnostic_workflow.py (99%) rename serve/{inferenceserver/api_server => server}/example_workflows/example_user_workflow.py (99%) rename serve/{inferenceserver/api_server => server}/example_workflows/foundry_fcn3.py (100%) rename serve/{inferenceserver/api_server => server}/example_workflows/foundry_fcn3_stormscope_goes.py (97%) rename serve/{inferenceserver/api_server => server}/example_workflows/stormcast_fcn3_workflow.py (98%) rename serve/{inferenceserver => server}/openapi.yaml (100%) rename serve/{inferenceserver/api_server => server}/planetary_computer/pc_client.py (100%) rename serve/{inferenceserver/api_server => server}/planetary_computer/template-collection-fcn3-stormscope-goes.json (100%) rename serve/{inferenceserver/api_server => server}/planetary_computer/template-collection-fcn3.json (100%) rename serve/{inferenceserver/api_server => server}/planetary_computer/template-feature-fcn3-stormscope-goes.json (100%) rename serve/{inferenceserver/api_server => server}/planetary_computer/template-feature-fcn3.json (100%) rename serve/{inferenceserver => server}/requirements.txt (80%) rename serve/{inferenceserver => server}/scripts/profile_workflow.sh (100%) rename serve/{inferenceserver => server}/scripts/redis.conf (100%) rename serve/{inferenceserver => server}/scripts/start_api_server.sh (92%) rename serve/{inferenceserver => server}/scripts/start_redis.sh (100%) rename serve/{inferenceserver => server}/scripts/startup.sh (59%) rename serve/{inferenceserver => server}/scripts/status.sh (98%) rename serve/{inferenceserver => server}/scripts/stop_api_server.sh (96%) rename serve/{inferenceserver => server}/scripts/stop_redis.sh (100%) rename serve/{ => server}/test/unit/test_e2workflow.py (82%) rename serve/{ => server}/test/unit/test_e2workflow_params.py (86%) create mode 100644 test/models/da/test_da_interp.py create mode 100644 test/models/da/test_da_sda_stormcast.py create mode 100644 test/models/da/test_utils.py create mode 100644 test/serve/client/conftest.py create mode 100644 test/serve/client/test_client.py create mode 100644 test/serve/client/test_e2client.py create mode 100644 test/serve/client/test_fsspec_utils.py delete mode 100644 test/serve/conftest.py create mode 100644 test/serve/server/conftest.py create mode 100644 test/serve/server/test_cleanup_daemon.py rename test/serve/{ => server}/test_config.py (96%) create mode 100644 test/serve/server/test_cpu_worker.py create mode 100644 test/serve/server/test_object_storage.py create mode 100644 test/serve/server/test_server_main.py create mode 100644 test/serve/server/test_utils.py create mode 100644 test/serve/server/test_worker.py rename test/serve/{ => server}/test_workflow.py (97%) delete mode 100644 test/serve/test_cleanup_daemon.py delete mode 100644 test/serve/test_cpu_worker.py delete mode 100644 test/serve/test_main.py diff --git a/.cursor/rules/e2s-000-python-style-guide.mdc b/.cursor/rules/e2s-000-python-style-guide.mdc index eb6f2cc04..d885e42a2 100644 --- a/.cursor/rules/e2s-000-python-style-guide.mdc +++ b/.cursor/rules/e2s-000-python-style-guide.mdc @@ -75,6 +75,17 @@ This rule enforces the coding standards for Earth2Studio as defined in [style.md - Run `make lint` to check linting - Pre-commit hooks will automatically format and lint code +## Logging + +- Print statements should always be done via [loguru.logger](https://loguru.readthedocs.io/en/stable/api.html) or using [rich.console](https://rich.readthedocs.io/en/stable/reference/console.html) +- Generally, debugging messages should be placed behind a verbose toggle +- For tqdm progress bars be sure to use the following snippet at the top of the file to ensure progress bars are not disrupted + + ``` + logger.remove() + add(lambda msg: tqdm.write(msg, end=""), colorize=True) + ``` + ## Code Quality Reminders - Always include type hints for function parameters and return values @@ -82,3 +93,4 @@ This rule enforces the coding standards for Earth2Studio as defined in [style.md - Prefer modern Python 3.10+ type syntax (`list[str]`, `str | None`) - Ensure all files have the SPDX license header at the top - Follow black formatting (run `make format` if unsure) +- Do not use Python's native print() inside any files of the earth2studio folder diff --git a/.cursor/rules/e2s-002-api-documentation.mdc b/.cursor/rules/e2s-002-api-documentation.mdc index 707efdaf0..65882aba3 100644 --- a/.cursor/rules/e2s-002-api-documentation.mdc +++ b/.cursor/rules/e2s-002-api-documentation.mdc @@ -238,6 +238,7 @@ class CorrelatedSphericalGaussian: - Use periods for complete sentences, omit for "by default" phrases - Include `Raises` section when exceptions are raised - Include `Warning` section for classes with important warnings +- Do not put doc strings at the top of python files, only license headers should be above imports ## Tools diff --git a/.cursor/rules/e2s-009-prognostic-models.mdc b/.cursor/rules/e2s-009-prognostic-models.mdc index e71df34dd..ee53da683 100644 --- a/.cursor/rules/e2s-009-prognostic-models.mdc +++ b/.cursor/rules/e2s-009-prognostic-models.mdc @@ -328,6 +328,8 @@ def to(self, device: torch.device | str) -> PrognosticModel: - Call `super().to(device)` for PyTorch module - Move any custom buffers/parameters to device - Return `self` for chaining +- Torch.nn.Module parent class addresses this requirement most of the time +- Generally its good to have `self.register_buffer("device_buffer", torch.empty(0))` in their init to help track what the current device of the model is ## Data Operations on GPU diff --git a/.github/ISSUE_TEMPLATE/bug_report.yml b/.github/ISSUE_TEMPLATE/bug_report.yml index 0b2dfb9fe..d74d80c90 100644 --- a/.github/ISSUE_TEMPLATE/bug_report.yml +++ b/.github/ISSUE_TEMPLATE/bug_report.yml @@ -1,4 +1,4 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2025 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. # SPDX-FileCopyrightText: All rights reserved. # SPDX-License-Identifier: Apache-2.0 # diff --git a/.github/ISSUE_TEMPLATE/chore.yml b/.github/ISSUE_TEMPLATE/chore.yml new file mode 100644 index 000000000..abe1d7022 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/chore.yml @@ -0,0 +1,59 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +name: Chore +description: Maintenance task, refactor, cleanup, or other housekeeping work +title: "🧹[CHORE]: " +labels: ["chore", "? - Needs Triage"] + +body: + - type: markdown + attributes: + value: | + Thanks for taking the time to help keep Earth2Studio clean and maintainable! + - By submitting this issue, you agree to follow our [Code of Conduct](https://github.com/NVIDIA/earth2studio/blob/main/CONTRIBUTING.md) + - You also confirm that you have searched the [open issues](https://github.com/NVIDIA/earth2studio/issues) and have found no duplicates for this request + + - type: dropdown + id: chore_type + attributes: + label: What type of chore is this? + options: + - Refactor + - Cleanup + - Dependency Update + - CI/CD + - Testing + - Other + validations: + required: true + + - type: dropdown + id: criticality + attributes: + label: How would you describe the priority of this chore + options: + - Critical (blocking other work) + - Medium + - Low (nice to have) + validations: + required: true + + - type: textarea + id: description + attributes: + label: Please provide a clear description of the chore. + description: Describe what needs to be done and why. Include relevant file paths, modules, or areas of the codebase affected. diff --git a/.github/ISSUE_TEMPLATE/documentation_request.yml b/.github/ISSUE_TEMPLATE/documentation_request.yml index 38f540cdf..8b07bd757 100644 --- a/.github/ISSUE_TEMPLATE/documentation_request.yml +++ b/.github/ISSUE_TEMPLATE/documentation_request.yml @@ -1,4 +1,4 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2025 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. # SPDX-FileCopyrightText: All rights reserved. # SPDX-License-Identifier: Apache-2.0 # diff --git a/.github/ISSUE_TEMPLATE/feature_request.yml b/.github/ISSUE_TEMPLATE/feature_request.yml index d6aa3f0a7..0c734d3a5 100644 --- a/.github/ISSUE_TEMPLATE/feature_request.yml +++ b/.github/ISSUE_TEMPLATE/feature_request.yml @@ -1,4 +1,4 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2025 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. # SPDX-FileCopyrightText: All rights reserved. # SPDX-License-Identifier: Apache-2.0 # diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 4baf555e6..096bcd82d 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -122,13 +122,6 @@ test-data: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes - changes: - paths: - - earth2studio/data/**/* - - earth2studio/lexicon/**/* - - test/data/**/* - - test/lexicon/**/* - compare_to: 'refs/heads/main' - <<: *test_rule_non_github_with_changes changes: paths: @@ -155,11 +148,6 @@ test-perturb: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes - changes: - paths: - - earth2studio/perturbation/**/* - - test/perturbation/**/* - compare_to: 'refs/heads/main' - <<: *test_rule_non_github_with_changes changes: paths: @@ -182,11 +170,6 @@ test-stats: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes - changes: - paths: - - earth2studio/statistics/**/* - - test/statistics/**/* - compare_to: 'refs/heads/main' - <<: *test_rule_non_github_with_changes changes: paths: @@ -209,11 +192,29 @@ test-px-models: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes + - <<: *test_rule_non_github_with_changes + changes: + paths: + - earth2studio/models/px/**/* + - test/models/px/**/* + compare_to: 'refs/heads/main' + - <<: *test_rule_changes_only changes: paths: - earth2studio/models/px/**/* - test/models/px/**/* compare_to: 'refs/heads/main' + - <<: *test_rule_never + +# TODO: REMOVE, CONFLICT CURRENTLY +test-px-ace2: + extends: + - .test:base + variables: + TOX_ENV: test-px-models-ace2 + rules: + - <<: *test_rule_always_if_pytest_all + - <<: *test_rule_main_with_changes - <<: *test_rule_non_github_with_changes changes: paths: @@ -236,22 +237,39 @@ test-dx-models: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes + - <<: *test_rule_non_github_with_changes changes: paths: - earth2studio/models/dx/**/* - test/models/dx/**/* compare_to: 'refs/heads/main' - - <<: *test_rule_non_github_with_changes + - <<: *test_rule_changes_only changes: paths: - earth2studio/models/dx/**/* - test/models/dx/**/* compare_to: 'refs/heads/main' + - <<: *test_rule_never + +test-da-models: + extends: + - .test:base + variables: + TOX_ENV: test-da-models + rules: + - <<: *test_rule_always_if_pytest_all + - <<: *test_rule_main_with_changes + - <<: *test_rule_non_github_with_changes + changes: + paths: + - earth2studio/models/da/**/* + - test/models/da/**/* + compare_to: 'refs/heads/main' - <<: *test_rule_changes_only changes: paths: - - earth2studio/models/dx/**/* - - test/models/dx/**/* + - earth2studio/models/da/**/* + - test/models/da/**/* compare_to: 'refs/heads/main' - <<: *test_rule_never @@ -263,12 +281,6 @@ test-serve: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes - changes: - paths: - - earth2studio/serve/**/* - - test/serve/**/* - - serve/**/* - compare_to: 'refs/heads/main' - <<: *test_rule_non_github_with_changes changes: paths: diff --git a/CHANGELOG.md b/CHANGELOG.md index 36273bd9f..5b5e9b0c8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,25 +15,39 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Added Earth2Studio base schema for dataframe sources - Added Planetary Computer data source for ECMWF IFS analysis data - Added accumulated variable support to NCAR ERA5 data source +- Added routine to tile tensors to higher-dimensional tensors +- Added routine to concatenate tensors along specified coordinate dimension - Added Planetary Computer data source for GOES cloud and moisture imagery - Added ability to have seperate data and model cache locations via env variables - Added random dataframe source - Added base reflectivity to MRMS data source +- Added `fetch_dataframe` utility function +- Added data assimilation model class +- Added equirectangular interpolation data assimilation model +- Added StormCast SDA model +- Adding Beta serve utils with inference server and client implementations ### Changed - Changed available date for ARCO data source to be dynamically updated - Changed ISD data frame return to master schema +- handshake_coords is now accepting list of dimensions while remaining backwards-compatible - Updated CBottle infill to mixture of model checkpoints +- Updated GraphCastOperational and GraphCastSmall latitude input / output to be [90,-90] +- Updated GraphCast models to support multiple time inputs, multiple times will be looped not batched ### Deprecated ### Removed +- Removed device from cbottle SR load_model api + ### Fixed +- Fixed timezone bug in `CBottleVideo` that converted UTC time to local system time - Bug in cbottle datasource resulting identical samples for multiple samples - Bug in StormCast loading out-of-date model package, introduced in `5518edecbabee371c824b34f0f2ec269a4d6094f` +- Bug in spherical perturbations which did not use lmax from the SHT transform ### Security @@ -43,6 +57,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Updated CBottle repo to NVlabs location - Updated Makani dependency hash to later version with pyproject toml fix - Updated ACE2 dependency hash with setuptools fix +- Updated models using PhysicsNeMo to compliance with `nvidia-physicsnemo>=2.0` ## [0.12.1] - 2026-01-29 diff --git a/Makefile b/Makefile index ef427b48f..8d6efa653 100644 --- a/Makefile +++ b/Makefile @@ -101,7 +101,7 @@ docs-dev: # Example DOCKER_REPO?=nvcr.io/dycvht5ows21 E2S_RELEASE_TAG?=0.12.0 E2S_IMAGE_NAME=$(DOCKER_REPO)/earth2studio-scicomp -E2S_IMAGE_TAG=v$(E2S_RELEASE_TAG).20260223.0 +E2S_IMAGE_TAG=v$(E2S_RELEASE_TAG).20260311.0 container-service: @test -n "$(DOCKER_REPO)" || (echo "DOCKER_REPO is not set!" && exit 1) DOCKER_BUILDKIT=1 docker build -t $(E2S_IMAGE_NAME):$(E2S_IMAGE_TAG) -f serve/Dockerfile . diff --git a/docs/conf.py b/docs/conf.py index 6ed0ed6a8..ee64c639e 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -50,7 +50,7 @@ # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information version = ".".join(release.split(".")[:2]) project = "Earth2Studio" -copyright = "2025, NVIDIA" +copyright = "2026, NVIDIA" author = "NVIDIA" # -- General configuration --------------------------------------------------- @@ -83,6 +83,7 @@ "css/nvidia-sphinx-theme.css", ] html_theme_options = { + "public_docs_features": True, "logo": { "text": "Earth2Studio", "image_light": "_static/NVIDIA-Logo-V-ForScreen-ForLightBG.png", diff --git a/docs/modules/models.rst b/docs/modules/models.rst index 1d1f89e77..3df2f16a0 100644 --- a/docs/modules/models.rst +++ b/docs/modules/models.rst @@ -96,6 +96,31 @@ etc. WindgustAFNO Identity +:mod:`earth2studio.models.da`: Data Assimilation +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +Data assimilation models are a class of models that incorporate observational data +into model states or grids. These models process sparse, irregularly-distributed +observations (typically from DataFrames) and map them to regular grids or model +coordinate systems (typically as DataArrays). Data assimilation models support both +stateless and stateful operation, allowing them to process observations independently +or maintain internal state across time steps. + +.. warning :: + + Data Assimilation models are a new addition to Earth2Studio and APIs might be subject + to change without warning while the implementation is hardened. + +.. currentmodule:: earth2studio.models.da + +.. autosummary:: + :nosignatures: + :toctree: generated/models/da/ + :template: dataassim.rst + + InterpEquirectangular + StormCastSDA + :mod:`earth2studio.models`: Utilities ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff --git a/docs/templates/dataassim.rst b/docs/templates/dataassim.rst new file mode 100644 index 000000000..c3e9907c5 --- /dev/null +++ b/docs/templates/dataassim.rst @@ -0,0 +1,23 @@ +:mod:`{{module}}`.{{objname}} +{{ underline }}============== + +.. currentmodule:: {{module}} + +.. autoclass:: {{ objname }} + + {% block methods %} + .. automethod:: __call__ + .. automethod:: create_generator + .. automethod:: load_default_package + .. automethod:: load_model + {% endblock %} + +.. _sphx_glr_backref_{{module}}.{{objname}}: + +.. minigallery:: {{module}}.{{objname}} + :add-heading: + :heading-level: ^ + +.. raw:: html + +
diff --git a/docs/userguide/about/install.md b/docs/userguide/about/install.md index 443c8fe7b..4905ce138 100644 --- a/docs/userguide/about/install.md +++ b/docs/userguide/about/install.md @@ -163,6 +163,7 @@ can take a long time to compile. :::{tab-item} pip ```bash +pip install --no-build-isolation "torch-harmonics @ git+https://github.com/NVIDIA/torch-harmonics.git@a632ca748a12bd9f74dbc1e00653317810991f74" pip install earth2studio[atlas] ``` @@ -267,7 +268,7 @@ for known suggestions/fixes related to this install process. ```bash export FORCE_CUDA_EXTENSION=1 -pip install --no-build-isolation torch-harmonics==0.8.0 +pip install --no-build-isolation "torch-harmonics @ git+https://github.com/NVIDIA/torch-harmonics.git@a632ca748a12bd9f74dbc1e00653317810991f74" pip install "makani @ git+https://github.com/NVIDIA/makani.git@fd1a62b9f27aebbc793f0cbafd838a3811de43fd" pip install earth2studio[fcn3] ``` @@ -277,7 +278,6 @@ pip install earth2studio[fcn3] ```bash export FORCE_CUDA_EXTENSION=1 -uv add torch-harmonics==0.8.0 --no-build-isolation uv add earth2studio --extra fcn3 ``` @@ -375,6 +375,7 @@ installed manually. :::{tab-item} pip ```bash +pip install --no-build-isolation "torch-harmonics @ git+https://github.com/NVIDIA/torch-harmonics.git@a632ca748a12bd9f74dbc1e00653317810991f74" pip install "makani @ git+https://github.com/NVIDIA/makani.git@fd1a62b9f27aebbc793f0cbafd838a3811de43fd" pip install earth2studio[sfno] ``` @@ -641,6 +642,63 @@ uv add earth2studio --extra windgust-afno ::::: :::::: +#### Data Assimilation + +:::{admonition} Warning +:class: warning + +Data assimilation model APIs are currently **in Beta** and may change in future +releases. Expect possible breaking changes as these APIs mature. +::: + +:::{admonition} Warning +:class: warning + +All data assimilation models require [CuPy](https://docs.cupy.dev/en/stable/) and [cuDF](https://docs.rapids.ai/api/cudf/stable/), +which are CUDA-dependent libraries. +The default installation uses CUDA 12 (i.e., `cupy-cuda12x`, `cudf-cu12`). +If your system uses a different CUDA version, you may need to adjust the dependencies. +::: + +::::::{tab-set} +:::::{tab-item} InterpEquirectangular +::::{tab-set} +:::{tab-item} pip + +```bash +pip install earth2studio[da-interp] +``` + +::: +:::{tab-item} uv + +```bash +uv add earth2studio --extra da-interp +``` + +::: +:::: +::::: +:::::{tab-item} StormCast SDA +::::{tab-set} +:::{tab-item} pip + +```bash +pip install earth2studio[da-stormcast] +``` + +::: +:::{tab-item} uv + +```bash +uv add earth2studio --extra da-stormcast +``` + +::: +:::: +::::: +:::::: + ### Submodule Dependencies A few features in various submodules require some specific dependencies that have been diff --git a/earth2studio/data/__init__.py b/earth2studio/data/__init__.py index f33b6038c..a27049741 100644 --- a/earth2studio/data/__init__.py +++ b/earth2studio/data/__init__.py @@ -41,7 +41,7 @@ from .rx import CosineSolarZenith, LandSeaMask, SurfaceGeoPotential from .time_window import TimeWindow from .ufs import UFSObsConv, UFSObsSat -from .utils import datasource_to_file, fetch_data, prep_data_array +from .utils import datasource_to_file, fetch_data, fetch_dataframe, prep_data_array from .wb2 import WB2ERA5, WB2Climatology, WB2ERA5_32x64, WB2ERA5_121x240 from .xr import ( DataArrayDirectory, diff --git a/earth2studio/data/ufs.py b/earth2studio/data/ufs.py index b3335b23b..b84566bc8 100644 --- a/earth2studio/data/ufs.py +++ b/earth2studio/data/ufs.py @@ -733,10 +733,3 @@ def _transform_column( def _add_task_columns(self, df: pd.DataFrame, task: _GSIAsyncTask) -> None: """Add satellite column for satellite data.""" df["satellite"] = task.satellite - - -if __name__ == "__main__": - - ds = UFSObsSat(satellites=["npp"], tolerance=timedelta(hours=6)) - df = ds(datetime(2024, 2, 1), ["atms"], ["lon", "variable"]) - print(df) diff --git a/earth2studio/data/utils.py b/earth2studio/data/utils.py index ba155969f..aa8bcb54f 100644 --- a/earth2studio/data/utils.py +++ b/earth2studio/data/utils.py @@ -43,18 +43,39 @@ from fsspec.utils import isfilelike from loguru import logger -from earth2studio.data.base import DataSource, ForecastSource +from earth2studio.data.base import ( + DataFrameSource, + DataSource, + ForecastFrameSource, + ForecastSource, +) from earth2studio.utils.interp import LatLonInterpolation from earth2studio.utils.time import ( leadtimearray_to_timedelta, timearray_to_datetime, to_time_array, ) -from earth2studio.utils.type import CoordSystem, LeadTimeArray, TimeArray, VariableArray +from earth2studio.utils.type import ( + CoordSystem, + FieldArray, + LeadTimeArray, + TimeArray, + VariableArray, +) if TYPE_CHECKING: from fsspec.implementations.cache_mapper import AbstractCacheMapper +try: + import cupy as cp +except ImportError: + cp = None + +try: + import cudf +except ImportError: + cudf = None + def fetch_data( source: DataSource | ForecastSource, @@ -62,16 +83,18 @@ def fetch_data( variable: VariableArray, lead_time: LeadTimeArray = np.array([np.timedelta64(0, "h")]), device: torch.device = "cpu", - interp_to: CoordSystem = None, + interp_to: CoordSystem | None = None, interp_method: str = "nearest", -) -> tuple[torch.Tensor, CoordSystem]: - """Utility function to fetch data for models and load data on the target device. - If desired, xarray interpolation/regridding in the spatial domain can be used - by passing a target coordinate system via the optional `interp_to` argument. + legacy: bool = True, +) -> tuple[torch.Tensor, CoordSystem] | xr.DataArray: + """Utility function to fetch data arrays from particular sources and load data on + the target device. If desired, xarray interpolation/regridding in the spatial + domain can be used by passing a target coordinate system via the optional + `interp_to` argument. Parameters ---------- - source : DataSource + source : DataSource | ForecastSource The data source to fetch from time : TimeArray Timestamps to return data for (UTC). @@ -81,20 +104,24 @@ def fetch_data( Lead times to fetch for each provided time, by default np.array(np.timedelta64(0, "h")) device : torch.device, optional - Torch devive to load data tensor to, by default "cpu" + Torch device to load data tensor to, by default "cpu" interp_to : CoordSystem, optional If provided, the fetched data will be interpolated to the coordinates specified by lat/lon arrays in this CoordSystem interp_method : str Interpolation method to use with xarray (by default 'nearest') + legacy : bool, optional + If True (default), returns tuple of (torch.Tensor, CoordSystem). + If False, returns xr.DataArray with numpy arrays for CPU or cupy arrays for CUDA. Returns ------- - tuple[torch.Tensor, CoordSystem] - Tuple containing output tensor and coordinate OrderedDict + tuple[torch.Tensor, CoordSystem] | xr.DataArray + If legacy=True: Tuple containing output tensor and coordinate OrderedDict. + If legacy=False: xr.DataArray with numpy arrays (CPU) or cupy arrays (CUDA). """ - sig = signature(source.__call__) + device = torch.device(device) if "lead_time" in sig.parameters: # Working with a Forecast Data Source @@ -112,12 +139,90 @@ def fetch_data( da = xr.concat(da, "lead_time") - return prep_data_array( - da, - device=device, - interp_to=interp_to, - interp_method=interp_method, - ) + if legacy: + return prep_data_array( + da, + device=device, + interp_to=interp_to, + interp_method=interp_method, + ) + + # Non-legacy path: return xr.DataArray + else: + if interp_to is not None: + raise ValueError( + "The interp_to argument is not supported when legacy is False. Set legacy=True to use interpolation." + ) + # Convert to cupy arrays if CUDA device and cupy is available + if device.type == "cuda": + if cp is not None: + with cp.cuda.Device(device.index or 0): + da = da.copy(data=cp.asarray(da.values)) + else: + raise ImportError( + "cupy is required when using device='cuda' with legacy=False. " + "Install cupy or use legacy=True." + ) + return da + + +def fetch_dataframe( + source: DataFrameSource | ForecastFrameSource, + time: TimeArray, + variable: VariableArray, + fields: FieldArray | None = None, + lead_time: LeadTimeArray = np.array([np.timedelta64(0, "h")]), + device: torch.device = "cpu", +) -> pd.DataFrame | cudf.DataFrame: + """Utility function to fetch data frames from particular sources + + Parameters + ---------- + source : DataFrameSource | ForecastFrameSource + The data source to fetch from + time : TimeArray + Timestamps to return data for (UTC). + variable : VariableArray + Strings or list of strings that refer to variables to return + fields : FieldArray | None + Array of strings indicating which fields to return in data frame, if None all + possible fields will be returned, by default None + lead_time : LeadTimeArray, optional + Lead times to fetch for each provided time, by default + np.array(np.timedelta64(0, "h")) + device : torch.device, optional + Torch device to load data tensor to, by default "cpu" + + Returns + ------- + pd.DataFrame | cudf.DataFrame + Pandas dataframe if device is CPU, cudf DataFrame if device is CUDA + """ + sig = signature(source.__call__) + + if "lead_time" in sig.parameters: + # Working with a ForecastFrameSource + df = source(time, lead_time, variable, fields=fields) # type: ignore + else: + # Combine all adjusted times and get unique values using broadcasting + all_times = (time[:, None] + lead_time).flatten() + unique_times = np.unique(all_times) + df = source(unique_times, variable, fields=fields) # type: ignore + # Add request meta-data + df.attrs = {"request_time": time, "request_lead_time": lead_time} + + # Convert to appropriate format based on device + device = torch.device(device) + if device.type == "cuda": + if cudf is None: + raise ImportError( + "cudf is required for CUDA device. Install with: pip install cudf" + ) + with cp.cuda.Device(device.index): + result = cudf.from_pandas(df) + return result + else: + return df def prep_data_array( @@ -239,6 +344,9 @@ def prep_data_inputs( if isinstance(variable, str): variable = [variable] + if isinstance(variable, np.ndarray): + variable = variable.astype(str).tolist() + if isinstance(time, datetime): time = [time] diff --git a/earth2studio/data/xr.py b/earth2studio/data/xr.py index afcc4098e..d15e9df51 100644 --- a/earth2studio/data/xr.py +++ b/earth2studio/data/xr.py @@ -187,6 +187,28 @@ def __call__( return self.da.sel(time=time, variable=variable) + async def fetch( # type: ignore[override] + self, + time: datetime | list[datetime] | TimeArray, + variable: str | list[str] | VariableArray, + ) -> xr.DataArray: + """Async function to get data + + Parameters + ---------- + time : datetime | list[datetime] | TimeArray + Timestamps to return data for (UTC). + variable : str | list[str] | VariableArray + String, list of strings or array of strings that refer to variables to + return. Must be in the GFS lexicon. + + Returns + ------- + xr.DataArray + Inference output data array + """ + return self.__call__(time, variable) + class DataSetFile: """A local xarray dataset file data source. This file should be compatible with diff --git a/earth2studio/io/zarr.py b/earth2studio/io/zarr.py index 6894ce81b..608ccdcfa 100644 --- a/earth2studio/io/zarr.py +++ b/earth2studio/io/zarr.py @@ -202,7 +202,8 @@ def add_array( if name in self.root and not kwargs.get("overwrite", False): raise RuntimeError( f"{name} is already in Zarr Store. " - + "To overwrite Zarr array pass overwrite=True to this function" + + "To overwrite Zarr array pass overwrite=True to this function or" + + " backend_kwargs = {'overwrite': True} to the ZarrBackend constructor" ) di = di.cpu().numpy() if di is not None else None diff --git a/earth2studio/models/da/__init__.py b/earth2studio/models/da/__init__.py new file mode 100644 index 000000000..cbb768276 --- /dev/null +++ b/earth2studio/models/da/__init__.py @@ -0,0 +1,18 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from .interp import InterpEquirectangular +from .sda_stormcast import StormCastSDA diff --git a/earth2studio/models/da/base.py b/earth2studio/models/da/base.py new file mode 100644 index 000000000..e0819ed81 --- /dev/null +++ b/earth2studio/models/da/base.py @@ -0,0 +1,188 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +from __future__ import annotations + +from collections.abc import Generator +from typing import Any, Protocol, runtime_checkable + +import pandas as pd +import xarray as xr + +from earth2studio.utils.type import CoordSystem, FrameSchema + +try: + import cudf +except ImportError: + cudf = None # type: ignore[assignment, misc] + + +@runtime_checkable +class AssimilationModel(Protocol): + """Data assimilation model interface""" + + def __call__( + self, + *args: pd.DataFrame | xr.DataArray | None, + ) -> tuple[pd.DataFrame | xr.DataArray, ...]: + """Stateless iteration for the data assimilation model. + + Processes observations and returns assimilated data without maintaining + internal state between calls. This method is suitable for independent + processing of observation batches. + + Parameters + ---------- + *args : pd.DataFrame | xr.DataArray | None + Variable number of observation arguments. Each argument can be a + DataFrame (pandas or cudf DataFrame) or xarray DataArray + containing observation data. None can be passed for optional + arguments when no input data is available. + + Returns + ------- + tuple[pd.DataFrame | xr.DataArray, ...] + Assimilated data output. Can return a combination of DataFrames or + xarray DataArrays depending on the particular model. Output is expect to be + on the same device as the model. + """ + + def create_generator( + self, + *args: pd.DataFrame | xr.DataArray, + ) -> Generator[ + tuple[pd.DataFrame | xr.DataArray, ...], + tuple[pd.DataFrame | xr.DataArray | None, ...], + None, + ]: + """Creates a generator which accepts collection of input observations and + outputs a collection of assimilated data. Used for both stateless and stateful + iterations of the data assimilation model + + The generator accepts observations (DataFrame or DataArray) via the send() + method and yields assimilated data (DataFrame or DataArray) as output. + Supports any number of arguments (variadic). + + Parameters + ---------- + *args : pd.DataFrame | xr.DataArray + Variable number of initialization arguments, if any are required by + the model. Each argument can be a DataFrame (pandas or cudf + DataFrame) or xarray DataArray containing initial state data. + + Yields + ------ + tuple[pd.DataFrame | xr.DataArray, ...] + Generator yields multiple arguments of assimilated data. Each argument + can be a DataFrame (PyArrow Table or cudf DataFrame) or xarray DataArray. + Supports any number of arguments. + + Receives + -------- + tuple[pd.DataFrame | xr.DataArray | None, ...] + Observations sent via generator.send() as multiple arguments. Each + argument can be a DataFrame (PyArrow Table or cudf DataFrame) or xarray + DataArray. None is sent initially to start the generator and can also be + sent for iterations where no input data is available. Supports any number + of arguments. + + Examples + -------- + >>> generator = model.create_generator() + >>> generator.send(None) # Prime the generator + >>> # Process observations over time + >>> for obs in observations: + ... result = generator.send(obs) # Send observations, receive assimilated data + ... # result is a tuple of DataFrames or DataArrays + >>> generator.close() # Clean up + """ + pass + + def init_coords(self) -> tuple[FrameSchema | CoordSystem, ...] | None: + """Initialization coordinate system required by the assimilation model. + + Specifies the coordinate system(s) for initial state data that must be provided + before the model can process observations. The returned coordinate systems should + match the expected input format for the first argument(s) passed to ``__call__`` + or sent to ``create_generator`` when initializing the model state. + + Returns + ------- + tuple[FrameSchema | CoordSystem, ...] | None + Tuple of coordinate systems or frame schemas defining the structure of + required initialization data. Returns ``None`` if the model does not require + initialization data (e.g., stateless models). + """ + pass + + def input_coords(self) -> tuple[FrameSchema | CoordSystem, ...]: + """Input coordinate system of assimilation model. + + For DataFrame inputs, this should return a PyArrow schema (or a wrapper + containing schema and constraints). For tensor inputs, this should return + a CoordSystem. + + Returns + ------- + tuple[FrameSchema | CoordSystem, ...] + Tuple of coordinate systems or frame schemas, one for each input argument + that __call__ or create_generator accepts + """ + pass + + def output_coords( + self, + input_coords: tuple[FrameSchema | CoordSystem, ...], + *args: Any, + **kwargs: Any, + ) -> tuple[FrameSchema | CoordSystem, ...]: + """Output coordinate system of the assimilation model given an input coordinate + system. + + Parameters + ---------- + input_coords : tuple[FrameSchema | CoordSystem, ...] + Input coordinate system tuple. FrameSchema (OrderedDict mapping field names + to numpy arrays) for DataFrame inputs, or CoordSystem (OrderedDict mapping + dimension names to coordinate arrays) for tensor inputs + *args + Additional positional arguments + **kwargs + Additional keyword arguments, typically including request metadata such as + request_time and request_lead_time from DataFrame attrs + + Returns + ------- + tuple[FrameSchema | CoordSystem, ...] + Tuple of coordinate systems or frame schemas, one for each output argument + that __call__ or create_generator returns + """ + pass + + def to(self, device: Any) -> AssimilationModel: + """Moves assimilation model onto inference device, this is typically satisfied + via `torch.nn.Module`. + + Parameters + ---------- + device : Any + Object representing the inference device, typically `torch.device` or str + + Returns + ------- + AssimilationModel + Returns instance of prognostic + """ + pass diff --git a/earth2studio/models/da/interp.py b/earth2studio/models/da/interp.py new file mode 100644 index 000000000..f51c2aacb --- /dev/null +++ b/earth2studio/models/da/interp.py @@ -0,0 +1,589 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +from collections.abc import Generator +from typing import Any + +import numpy as np +import pandas as pd +import torch +import xarray as xr +from loguru import logger + +from earth2studio.models.da.utils import ( + dfseries_to_torch, + filter_time_range, + validate_observation_fields, +) +from earth2studio.utils.imports import ( + OptionalDependencyFailure, + check_optional_dependencies, +) +from earth2studio.utils.time import normalize_time_tolerance +from earth2studio.utils.type import CoordSystem, FrameSchema, TimeTolerance + +try: + import cupy as cp +except ImportError: + OptionalDependencyFailure("gpu") + cp = None # type: ignore[assignment] + + +@check_optional_dependencies() +class InterpEquirectangular(torch.nn.Module): + """Interpolation assimilation model that interpolates sparse observations to a + lat-lon grid. + + This is a sample implementation of an AssimilationModel that: + - Accepts DataFrames with observations (time, lat, lon, observation, variable) + - Interpolates observations to a regular lat-lon grid using specified method + - Validates input observations against schema constraints + - Supports interpolation methods: 'nearest' or 'smolyak' (Smolyak sparse grid algorithm) + + Parameters + ---------- + lat : np.ndarray | None, optional + Latitude coordinates for output grid, by default None (uses default grid over + CONUS) + lon : np.ndarray | None, optional + Longitude coordinates for output grid, by default None (uses default + grid over CONUS) + interp_method : str, optional + Interpolation method to use: 'nearest' or 'smolyak', by default "smolyak" + time_tolerance : TimeTolerance, optional + Time tolerance for filtering observations. Observations within the tolerance + window around each requested time will be used for interpolation, by default + np.timedelta64(10, "m") + + Raises + ------ + ValueError + If interp_method is not one of the supported methods + """ + + # Acceptable variables for this model + VARIABLES = ["t2m", "u10m", "v10m", "sp"] + + def __init__( + self, + lat: np.ndarray | None = None, + lon: np.ndarray | None = None, + interp_method: str = "smolyak", + time_tolerance: TimeTolerance = np.timedelta64(10, "m"), + ) -> None: + if interp_method not in ["nearest", "smolyak"]: + raise ValueError( + f"interp_method must be one of ['nearest', 'smolyak'], " + f"got {interp_method}" + ) + super().__init__() + self._lat = ( + lat if lat is not None else np.linspace(25.0, 50.0, 101, dtype=np.float32) + ) + self._lon = ( + lon if lon is not None else np.linspace(235.0, 295.0, 241, dtype=np.float32) + ) + self.interp_method = interp_method + self._tolerance = normalize_time_tolerance(time_tolerance) + self.register_buffer("device_buffer", torch.empty(0), persistent=False) + + def init_coords(self) -> None: + """Initialization coords (not required)""" + return None + + def input_coords(self) -> tuple[FrameSchema]: + """Input coordinate system specifying required DataFrame fields. + + Returns + ------- + tuple[FrameSchema] + Tuple containing coordinate system dictionary with field names as keys: + - variable: array of acceptable variable values + - time, lat, lon, observation: empty arrays (dynamic dimensions) + """ + return ( + FrameSchema( + { + "time": np.empty(0, dtype="datetime64[ns]"), + "lat": np.empty(0, dtype=np.float32), + "lon": np.empty(0, dtype=np.float32), + "observation": np.empty(0, dtype=np.float32), + "variable": np.array(self.VARIABLES, dtype=str), + } + ), + ) + + def output_coords( + self, + input_coords: tuple[CoordSystem], + request_time: np.ndarray, + **kwargs: Any, + ) -> tuple[CoordSystem]: + """Output coordinate system for assimilated data. + + Parameters + ---------- + input_coords : tuple[CoordSystem, ...] + Input coordinate system (CoordSystem for DataFrame input) + + Returns + ------- + tuple[CoordSystem] + Coordinate system dictionary with time, variable, lat, and lon dimensions + + Raises + ------ + ValueError + If input_coords are not valid + """ + # Extract variables from first input coord system + if len(input_coords) > 0 and "variable" in input_coords[0]: + variables = input_coords[0]["variable"] + else: + variables = self.VARIABLES + + return ( + CoordSystem( + { + "time": request_time, + "variable": np.array(variables, dtype=str), + "lat": self._lat, + "lon": self._lon, + } + ), + ) + + def __call__(self, obs: pd.DataFrame) -> xr.DataArray: + """Stateless forward pass""" + input_coords = self.input_coords() + (output_coords,) = self.output_coords(input_coords, **obs.attrs) + # Validate observation types match input_coords + validate_observation_fields(obs, required_fields=list(input_coords[0].keys())) + return self._interpolate_dataframe(obs, output_coords) + + def create_generator(self) -> Generator[ + xr.DataArray, + pd.DataFrame, + None, + ]: + """Creates a generator which accepts collection of input observations and + outputs a collection of assimilated data. + + Parameters + ---------- + x : AssimilationInput + Input configuration for the assimilation model + + Yields + ------ + xr.DataArray + Assimilated data output the generator yields + + Receives + -------- + *DataFrame + Observations sent via generator.send() + """ + # Validate input configuration + + # Initialize generator - first yield is None to start + observations = yield None # type: ignore[misc] + try: + while True: + da = self.__call__(observations) + observations = yield da + except GeneratorExit: + logger.debug("InterpEquirectangular clean up complete.") + + def _interpolate_dataframe( + self, df: pd.DataFrame, output_coords: CoordSystem + ) -> xr.DataArray: + """Interpolate DataFrame observations to a regular lat-lon grid. + + Parameters + ---------- + df : pd.DataFrame + Input observations DataFrame with columns: time, lat, lon, observation, variable + output_coords : CoordSystem + Output coordinate system with time, variable, lat, lon dimensions + + Returns + ------- + xr.DataArray + Interpolated data array on the output grid + """ + variables = output_coords["variable"] + lat_grid = output_coords["lat"] + lon_grid = output_coords["lon"] + time_coords = output_coords["time"] + + # Initialize output array: (time, variable, lat, lon) + n_time = len(time_coords) + n_var = len(variables) + n_lat = len(lat_grid) + n_lon = len(lon_grid) + + device = self.device_buffer.device + lat_grid_t = torch.tensor(lat_grid, dtype=torch.float32, device=device) + lon_grid_t = torch.tensor(lon_grid, dtype=torch.float32, device=device) + + # Create meshgrid using torch + lon_mesh_t, lat_mesh_t = torch.meshgrid(lon_grid_t, lat_grid_t, indexing="ij") + # Stack and reshape to [n_lat * n_lon, 2] with (lat, lon) pairs + target_points_t = torch.stack( + [lat_mesh_t.T.ravel(), lon_mesh_t.T.ravel()], dim=1 + ) + + # Initialize output tensor + interpolated_data = torch.full( + (n_time, n_var, n_lat, n_lon), + float("nan"), + dtype=torch.float32, + device=device, + ) + + # Process each time step separately + for t_idx, request_time in enumerate(time_coords): + # Filter observations within tolerance window for this time step + time_filtered_df = filter_time_range( + df, request_time, self._tolerance, time_column="time" + ) + + # Group observations by variable and interpolate each + for var_idx, variable in enumerate(variables): + var_df = time_filtered_df[ + time_filtered_df["variable"] == variable + ].copy() + + if len(var_df) == 0: + # No observations for this variable at this time, leave as NaN + continue + + # Extract observation points and values, convert to torch + source_lat = dfseries_to_torch( + var_df["lat"], dtype=torch.float32, device=device + ) + source_lon = dfseries_to_torch( + var_df["lon"], dtype=torch.float32, device=device + ) + source_points_t = torch.stack([source_lat, source_lon], dim=1) + values_t = dfseries_to_torch( + var_df["observation"], dtype=torch.float32, device=device + ) + + # Interpolate to grid using PyTorch + grid_values = self._interpolate_scattered( + source_points_t, values_t, target_points_t, n_lat, n_lon + ) + + # Assign to this time step + interpolated_data[t_idx, var_idx, :, :] = grid_values + + # Create DataArray (convert tensor to numpy or cupy based on device) + if device.type == "cuda" and cp is not None: + data_array = cp.asarray(interpolated_data) # Zero-copy + else: + data_array = interpolated_data.cpu().numpy() + + da = xr.DataArray( + data=data_array, + dims=["time", "variable", "lat", "lon"], + coords={ + "time": time_coords, + "variable": variables, + "lat": lat_grid, + "lon": lon_grid, + }, + ) + + return da + + def _interpolate_scattered( + self, + source_points: torch.Tensor, + values: torch.Tensor, + target_points: torch.Tensor, + n_lat: int, + n_lon: int, + ) -> torch.Tensor: + """Interpolate scattered points to target grid using PyTorch. + + Accounts for periodic boundary condition in longitude. + Automatically converts longitude from -180,180 range to 0,360 range if needed. + + Parameters + ---------- + source_points : torch.Tensor + Source points [N, 2] with (lat, lon) coordinates. Longitude can be in + -180,180 or 0,360 range. + values : torch.Tensor + Values at source points [N] + target_points : torch.Tensor + Target grid points [M, 2] with (lat, lon) coordinates. Longitude can be in + -180,180 or 0,360 range. + n_lat : int + Number of latitude points in output grid + n_lon : int + Number of longitude points in output grid + + Returns + ------- + torch.Tensor + Interpolated values [n_lat, n_lon] + """ + target_lat = target_points[:, 0:1] # [M, 1] + target_lon = target_points[:, 1:2] # [M, 1] + source_lat = source_points[:, 0:1].T # [1, N] + source_lon = source_points[:, 1:2].T # [1, N] + + # Normalize longitude from -180,180 to 0,360 range + # Convert negative longitudes to positive: -180 -> 180, -90 -> 270, etc. + target_lon = torch.where(target_lon < 0, target_lon + 360.0, target_lon) + source_lon = torch.where(source_lon < 0, source_lon + 360.0, source_lon) + + # Latitude distance (not periodic) + lat_diff = target_lat - source_lat # [M, N] + lat_dist_sq = lat_diff**2 + + # Longitude distance with periodic boundary (0-360) + lon_diff = target_lon - source_lon # [M, N] + # Compute periodic distance: min(|diff|, 360 - |diff|) + lon_diff_abs = torch.abs(lon_diff) + lon_dist = torch.minimum(lon_diff_abs, 360.0 - lon_diff_abs) + lon_dist_sq = lon_dist**2 + distances = torch.sqrt(lat_dist_sq + lon_dist_sq) + + if self.interp_method == "nearest": + # Nearest neighbor interpolation using distance + nearest_indices = torch.argmin(distances, dim=1) + interpolated = values[nearest_indices] + elif self.interp_method == "smolyak": + interpolated = self._smolyak_interpolate( + source_points, values, target_points + ) + else: + raise ValueError(f"Unsupported interpolation type: {self.interp_method}") + + # Reshape to grid + return interpolated.reshape(n_lat, n_lon) + + def _chebyshev_polynomials(self, x: torch.Tensor, degree: int) -> torch.Tensor: + """Evaluate Chebyshev polynomials T_0(x) through T_degree(x) using recurrence. + + Parameters + ---------- + x : torch.Tensor + Input values [..., N] + degree : int + Maximum polynomial degree + + Returns + ------- + torch.Tensor + Chebyshev polynomial values [..., N, degree+1] + """ + shape = x.shape + out = torch.zeros(*shape, degree + 1, dtype=x.dtype, device=x.device) + + # T_0(x) = 1 + out[..., 0] = 1.0 + + if degree >= 1: + # T_1(x) = x + out[..., 1] = x + + # Recurrence: T_n(x) = 2*x*T_{n-1}(x) - T_{n-2}(x) + for n in range(2, degree + 1): + out[..., n] = 2.0 * x * out[..., n - 1] - out[..., n - 2] + + return out + + def _smolyak_interpolate( + self, + source_points: torch.Tensor, + values: torch.Tensor, + target_points: torch.Tensor, + ) -> torch.Tensor: + """Interpolate using Smolyak's algorithm with Chebyshev polynomial basis. + + Vectorized implementation using Smolyak sparse grid structure for efficient + polynomial interpolation. Uses tensor products of Chebyshev polynomials. + + Parameters + ---------- + source_points : torch.Tensor + Source points [N, 2] with (lat, lon) coordinates + values : torch.Tensor + Values at source points [N] + target_points : torch.Tensor + Target points [M, 2] with (lat, lon) coordinates + + Returns + ------- + torch.Tensor + Interpolated values [M] + """ + device = source_points.device + N = source_points.shape[0] + M = target_points.shape[0] + d = 2 # 2D: lat and lon + + # Normalize coordinates to [-1, 1]^2 for Chebyshev polynomials + source_lat = source_points[:, 0] + source_lon = source_points[:, 1] + target_lat = target_points[:, 0] + target_lon = target_points[:, 1] + + # Normalize longitude to 0-360 range first + source_lon = torch.where(source_lon < 0, source_lon + 360.0, source_lon) + target_lon = torch.where(target_lon < 0, target_lon + 360.0, target_lon) + + # Get bounds with padding + lat_min, lat_max = source_lat.min().item(), source_lat.max().item() + lon_min, lon_max = source_lon.min().item(), source_lon.max().item() + + lat_range = lat_max - lat_min + lon_range = lon_max - lon_min + lat_min -= lat_range * 0.1 + lat_max += lat_range * 0.1 + lon_min -= lon_range * 0.1 + lon_max += lon_range * 0.1 + + # Clamp to valid ranges + lat_min = max(lat_min, -90.0) + lat_max = min(lat_max, 90.0) + lon_min = max(lon_min, 0.0) + lon_max = min(lon_max, 360.0) + + # Normalize to [-1, 1] + source_lat_norm = 2.0 * (source_lat - lat_min) / (lat_max - lat_min) - 1.0 + source_lon_norm = 2.0 * (source_lon - lon_min) / (lon_max - lon_min) - 1.0 + target_lat_norm = 2.0 * (target_lat - lat_min) / (lat_max - lat_min) - 1.0 + target_lon_norm = 2.0 * (target_lon - lon_min) / (lon_max - lon_min) - 1.0 + + # Determine Smolyak level mu adaptively based on number of points + # For 2D: mu=1->5, mu=2->13, mu=3->29, mu=4->65, mu=5->145, mu=6->321, mu=7->705 points + mu_thresholds = [(500, 7), (200, 6), (100, 5), (50, 4), (25, 3), (9, 2)] + mu = 1 + max_degree = 1 + for threshold, level in mu_thresholds: + if N >= threshold: + mu = level + max_degree = level + break + + # Generate Smolyak indices: combinations where d < sum(i) <= d + mu + # Vectorized generation + i1_range = torch.arange(1, mu + 2, device=device) + i2_range = torch.arange(1, mu + 2, device=device) + i1_grid, i2_grid = torch.meshgrid(i1_range, i2_range, indexing="ij") + mask = (d < (i1_grid + i2_grid)) & ((i1_grid + i2_grid) <= (d + mu)) + smol_i1 = i1_grid[mask] + smol_i2 = i2_grid[mask] + + # Compute m_i(i) = 2^(i-1) + 1 for i > 1, else special cases + def m_i(i: torch.Tensor) -> torch.Tensor: + result = torch.where( + i == 1, + torch.tensor(1, device=device), + torch.where(i == 0, torch.tensor(0, device=device), (2 ** (i - 1) + 1)), + ) + return result + + # Get degrees for each dimension + deg1_all = torch.clamp(m_i(smol_i1) - 1, max=max_degree) + deg2_all = torch.clamp(m_i(smol_i2) - 1, max=max_degree) + + # Build unique basis terms (deg_lat, deg_lon) pairs + basis_terms = set() + for idx in range(len(smol_i1)): + d1 = int(deg1_all[idx].item()) + d2 = int(deg2_all[idx].item()) + for d1_val in range(d1 + 1): + for d2_val in range(d2 + 1): + if d1_val + d2_val <= max_degree: + basis_terms.add((d1_val, d2_val)) + + # Fallback if no terms + if len(basis_terms) == 0: + for deg_lat in range(max_degree + 1): + for deg_lon in range(max_degree + 1): + if deg_lat + deg_lon <= max_degree: + basis_terms.add((deg_lat, deg_lon)) + + # Evaluate Chebyshev polynomials for source points + cheb_lat = self._chebyshev_polynomials( + source_lat_norm, max_degree + ) # [N, max_degree+1] + cheb_lon = self._chebyshev_polynomials( + source_lon_norm, max_degree + ) # [N, max_degree+1] + + # Build basis matrix vectorized + basis_list = [] + for deg_lat, deg_lon in sorted(basis_terms): + basis_list.append(cheb_lat[:, deg_lat] * cheb_lon[:, deg_lon]) + + if len(basis_list) == 0: + basis_matrix = torch.ones(N, 1, device=device) + else: + basis_matrix = torch.stack(basis_list, dim=1) # [N, n_basis] + + # Limit basis size to avoid overfitting + if basis_matrix.shape[1] > N: + basis_matrix = basis_matrix[:, :N] + + # Solve for coefficients using regularized least squares (vectorized) + reg = 1e-6 * torch.eye(basis_matrix.shape[1], device=device) + ATA = basis_matrix.T @ basis_matrix + reg + ATb = basis_matrix.T @ values.unsqueeze(1) + try: + coeffs = torch.linalg.solve(ATA, ATb).squeeze(1) # [n_basis] + except Exception: + # Fallback to SVD + U, S, Vt = torch.linalg.svd(basis_matrix, full_matrices=False) + threshold_svd = 1e-6 * S[0] if S[0] > 0 else 1e-6 + S_inv = torch.where(S > threshold_svd, 1.0 / S, torch.zeros_like(S)) + coeffs = (Vt.T @ (S_inv[:, None] * (U.T @ values.unsqueeze(1)))).squeeze(1) + + # Evaluate polynomial at target points (vectorized) + cheb_lat_target = self._chebyshev_polynomials( + target_lat_norm, max_degree + ) # [M, max_degree+1] + cheb_lon_target = self._chebyshev_polynomials( + target_lon_norm, max_degree + ) # [M, max_degree+1] + + # Build target basis matrix with same structure + target_basis_list = [] + for deg_lat, deg_lon in sorted(basis_terms): + target_basis_list.append( + cheb_lat_target[:, deg_lat] * cheb_lon_target[:, deg_lon] + ) + + if len(target_basis_list) == 0: + target_basis = torch.ones(M, 1, device=device) + else: + target_basis = torch.stack(target_basis_list, dim=1) # [M, n_basis] + # Match coefficient size + if target_basis.shape[1] > len(coeffs): + target_basis = target_basis[:, : len(coeffs)] + elif target_basis.shape[1] < len(coeffs): + coeffs = coeffs[: target_basis.shape[1]] + + # Evaluate: target_basis @ coeffs (fully vectorized) + interpolated = target_basis @ coeffs # [M] + + return interpolated diff --git a/earth2studio/models/da/sda_stormcast.py b/earth2studio/models/da/sda_stormcast.py new file mode 100644 index 000000000..59980d2b0 --- /dev/null +++ b/earth2studio/models/da/sda_stormcast.py @@ -0,0 +1,914 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import warnings +from collections import OrderedDict +from collections.abc import Generator +from itertools import product + +import numpy as np +import pandas as pd +import torch +import xarray as xr +import zarr +from loguru import logger + +from earth2studio.data import GFS_FX, HRRR, DataSource, ForecastSource, fetch_data +from earth2studio.models.auto import AutoModelMixin, Package +from earth2studio.models.da.base import AssimilationModel +from earth2studio.models.da.utils import filter_time_range +from earth2studio.utils import ( + handshake_coords, + handshake_dim, + handshake_size, +) +from earth2studio.utils.imports import ( + OptionalDependencyFailure, + check_optional_dependencies, +) +from earth2studio.utils.time import normalize_time_tolerance +from earth2studio.utils.type import CoordSystem, FrameSchema, TimeTolerance + +try: + import cupy as cp +except ImportError: + cp = None + +try: + from scipy.spatial import cKDTree +except ImportError: + OptionalDependencyFailure("stormcast") + cKDTree = None + +try: + from omegaconf import OmegaConf + from physicsnemo.diffusion.guidance import ( + DataConsistencyDPSGuidance, + DPSScorePredictor, + ) + from physicsnemo.diffusion.noise_schedulers import EDMNoiseScheduler + from physicsnemo.diffusion.preconditioners import EDMPreconditioner + from physicsnemo.diffusion.preconditioners.legacy import EDMPrecond + from physicsnemo.diffusion.samplers import sample + from physicsnemo.models.diffusion_unets import StormCastUNet +except ImportError: + OptionalDependencyFailure("stormcast") + StormCastUNet = None + EDMPreconditioner = None + OmegaConf = None + + +# Variables used in StormCastV1 paper +VARIABLES = ( + ["u10m", "v10m", "t2m", "msl"] + + [ + var + str(level) + for var, level in product( + ["u", "v", "t", "q", "Z", "p"], + map( + lambda x: str(x) + "hl", + [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 15, 20, 25, 30], + ), + ) + if not ((var == "p") and (int(level.replace("hl", "")) > 20)) + ] + + [ + "refc", + ] +) + +CONDITIONING_VARIABLES = ["u10m", "v10m", "t2m", "tcwv", "sp", "msl"] + [ + var + str(level) + for var, level in product(["u", "v", "z", "t", "q"], [1000, 850, 500, 250]) +] + +INVARIANTS = ["lsm", "orography"] + + +@check_optional_dependencies() +class StormCastSDA(torch.nn.Module, AutoModelMixin): + """StormCast with score-based data assimilation (SDA) using diffusion posterior + sampling for convection-allowing regional forecasts. Combines a regression and + diffusion model with DPS guidance to assimilate observations during inference. + Model time step size is 1 hour, taking as input: + + - High-resolution (3km) HRRR state over the central United States (99 vars) + - High-resolution land-sea mask and orography invariants + - Coarse resolution (25km) global state (26 vars) + - Point observations for data assimilation + + The high-resolution grid is the HRRR Lambert conformal projection. + Coarse-resolution inputs are regridded to the HRRR grid internally. + + Note + ---- + For more information see the following references: + + - https://arxiv.org/abs/2408.10958 + - https://huggingface.co/nvidia/stormcast-v1-era5-hrrr + - https://arxiv.org/abs/2306.10574 + + Parameters + ---------- + regression_model : torch.nn.Module + Deterministic model used to make an initial prediction + diffusion_model : torch.nn.Module + Generative model correcting the deterministic prediciton + means : torch.Tensor + Mean value of each input high-resolution variable + stds : torch.Tensor + Standard deviation of each input high-resolution variable + invariants : torch.Tensor + Static invariant quantities + hrrr_lat_lim : tuple[int, int], optional + HRRR grid latitude limits, defaults to be the StormCastV1 region in central + United States, by default (273, 785) + hrrr_lon_lim : tuple[int, int], optional + HRRR grid longitude limits, defaults to be the StormCastV1 region in central + United States,, by default (579, 1219) + variables : np.array, optional + High-resolution variables, by default np.array(VARIABLES) + conditioning_means : torch.Tensor | None, optional + Means to normalize conditioning data, by default None + conditioning_stds : torch.Tensor | None, optional + Standard deviations to normalize conditioning data, by default None + conditioning_variables : np.array, optional + Global variables for conditioning, by default np.array(CONDITIONING_VARIABLES) + conditioning_data_source : DataSource | ForecastSource | None, optional + Data Source to use for global conditioning. Required for running in iterator mode, by default None + time_tolerance : TimeTolerance, optional + Time tolerance for filtering observations. Observations within the tolerance + window around each requested time will be used for data assimilation, + by default np.timedelta64(10, "m") + sampler_steps : int, optional + Number of diffusion sampler steps, by default 36 + sampler_args : dict[str, float | int] | None, optional + Arguments to pass to the diffusion sampler, by default None + sda_std_obs : float, optional + Observation noise standard deviation for DPS guidance, by default 0.1 + sda_gamma : float, optional + SDA scaling factor for DPS guidance, by default 0.001 + """ + + def __init__( + self, + regression_model: torch.nn.Module, + diffusion_model: torch.nn.Module, + means: torch.Tensor, + stds: torch.Tensor, + invariants: torch.Tensor, + hrrr_lat_lim: tuple[int, int] = (273, 785), + hrrr_lon_lim: tuple[int, int] = (579, 1219), + variables: np.array = np.array(VARIABLES), + conditioning_means: torch.Tensor | None = None, + conditioning_stds: torch.Tensor | None = None, + conditioning_variables: np.array = np.array(CONDITIONING_VARIABLES), + conditioning_data_source: DataSource | ForecastSource | None = None, + time_tolerance: TimeTolerance = np.timedelta64(10, "m"), + sampler_steps: int = 36, + sampler_args: dict[str, float | int] | None = None, + sda_std_obs: float = 0.1, + sda_gamma: float = 0.001, + ): + super().__init__() + self.regression_model = regression_model + self.diffusion_model = diffusion_model + self.register_buffer("means", means) + self.register_buffer("stds", stds) + self.register_buffer("invariants", invariants) + self.register_buffer("device_buffer", torch.empty(0)) + self.sampler_steps = sampler_steps + self.sampler_args = { + "sigma_min": 0.002, + "sigma_max": 800, + "rho": 7, + "S_churn": 0.0, + "S_min": 0.0, + "S_max": float("inf"), + "S_noise": 1, + } + if sampler_args is not None: + self.sampler_args.update(sampler_args) + self._tolerance = normalize_time_tolerance(time_tolerance) + self.sda_std_obs = sda_std_obs + self.sda_dps_norm = 2 + self.sda_gamma = sda_gamma + + hrrr_lat, hrrr_lon = HRRR.grid() + self.lat = hrrr_lat[ + hrrr_lat_lim[0] : hrrr_lat_lim[1], hrrr_lon_lim[0] : hrrr_lon_lim[1] + ] + self.lon = hrrr_lon[ + hrrr_lat_lim[0] : hrrr_lat_lim[1], hrrr_lon_lim[0] : hrrr_lon_lim[1] + ] + + self.hrrr_x = HRRR.HRRR_X[hrrr_lon_lim[0] : hrrr_lon_lim[1]] + self.hrrr_y = HRRR.HRRR_Y[hrrr_lat_lim[0] : hrrr_lat_lim[1]] + + # Build ordered boundary polygon from 2D grid perimeter for + # point-in-grid testing (top row -> right col -> bottom row -> left col) + self._grid_boundary = np.column_stack( + [ + np.concatenate( + [ + self.lat[0, :], + self.lat[1:, -1], + self.lat[-1, -2::-1], + self.lat[-2:0:-1, 0], + ] + ), + np.concatenate( + [ + self.lon[0, :], + self.lon[1:, -1], + self.lon[-1, -2::-1], + self.lon[-2:0:-1, 0], + ] + ), + ] + ) # [n_boundary, 2] ordered (lat, lon) + + # Build a KD-tree over (lat, lon) for efficient nearest-grid-point queries + # TODO: Make cpu and gpu support + self._grid_tree = cKDTree(np.column_stack([self.lat.ravel(), self.lon.ravel()])) + + self.variables = variables + + self.conditioning_variables = conditioning_variables + self.conditioning_data_source = conditioning_data_source + if conditioning_data_source is None: + warnings.warn( + "No conditioning data source was provided to StormCast, " + + "set the conditioning_data_source attribute of the model " + + "before running inference." + ) + + if conditioning_means is not None: + self.register_buffer("conditioning_means", conditioning_means) + + if conditioning_stds is not None: + self.register_buffer("conditioning_stds", conditioning_stds) + + @property + def device(self) -> torch.device: + return self.device_buffer.device + + def init_coords(self) -> tuple[CoordSystem]: + """Initialization coordinate system""" + return ( + OrderedDict( + { + "time": np.empty(0), + "lead_time": np.array([np.timedelta64(0, "h")]), + "variable": np.array(self.variables), + "hrrr_y": self.hrrr_y, + "hrrr_x": self.hrrr_x, + } + ), + ) + + def input_coords(self) -> tuple[FrameSchema]: + """Input coordinate system specifying required DataFrame fields.""" + return ( + FrameSchema( + { + "time": np.empty(0, dtype="datetime64[ns]"), + "lat": np.empty(0, dtype=np.float32), + "lon": np.empty(0, dtype=np.float32), + "observation": np.empty(0, dtype=np.float32), + "variable": np.array(self.variables, dtype=str), + } + ), + ) + + def output_coords(self, input_coords: tuple[CoordSystem]) -> tuple[CoordSystem]: + """Output coordinate system of the assimilation model + + Parameters + ---------- + input_coords : tuple[CoordSystem] + Coordinates of tensor used to initialize the forecast model. + + Returns + ------- + CoordSystem + Coordinate system dictionary + """ + + output_coords = OrderedDict( + { + "time": np.empty(0), + "lead_time": np.array([np.timedelta64(1, "h")]), + "variable": np.array(self.variables), + "hrrr_y": self.hrrr_y, + "hrrr_x": self.hrrr_x, + } + ) + + target_input_coords = self.init_coords()[0] + + handshake_dim(input_coords[0], "hrrr_x", 4) + handshake_dim(input_coords[0], "hrrr_y", 3) + handshake_dim(input_coords[0], "variable", 2) + # Index coords are arbitrary as long its on the HRRR grid, so just check size + handshake_size(input_coords[0], "hrrr_y", self.lat.shape[0]) + handshake_size(input_coords[0], "hrrr_x", self.lat.shape[1]) + handshake_coords(input_coords[0], target_input_coords, "variable") + + output_coords["time"] = input_coords[0]["time"] + output_coords["lead_time"] = ( + output_coords["lead_time"] + input_coords[0]["lead_time"] + ) + return (output_coords,) + + @classmethod + def load_default_package(cls) -> Package: + """Load assimilation package""" + package = Package( + "hf://nvidia/stormcast-v1-era5-hrrr@6c89a0877a0d6b231033d3b0d8b9828a6f833ed8", + cache_options={ + "cache_storage": Package.default_cache("stormcast"), + "same_names": True, + }, + ) + return package + + @classmethod + @check_optional_dependencies() + def load_model( + cls, + package: Package, + conditioning_data_source: DataSource | ForecastSource = GFS_FX(verbose=False), + time_tolerance: TimeTolerance = np.timedelta64(10, "m"), + sampler_steps: int = 36, + sda_std_obs: float = 0.1, + sda_gamma: float = 0.001, + ) -> AssimilationModel: + """Load assimilation from package + + Parameters + ---------- + package : Package + Package to load model from + conditioning_data_source : DataSource | ForecastSource, optional + Data source to use for global conditioning, by default GFS_FX + time_tolerance : TimeTolerance, optional + Time tolerance for filtering observations. Observations within the tolerance + window around each requested time will be used for data assimilation, + by default np.timedelta64(10, "m") + sampler_steps : int, optional + Number of diffusion sampler steps, by default 36 + sda_std_obs : float, optional + Observation noise standard deviation for DPS guidance, by default 0.1 + sda_gamma : float, optional + SDA scaling factor for DPS guidance, by default 0.001 + + Returns + ------- + AssimilationModel + Assimilation model + """ + try: + package.resolve("config.json") # HF tracking download statistics + except FileNotFoundError: + pass + + try: + OmegaConf.register_new_resolver("eval", eval) + except ValueError: + # Likely already registered so skip + pass + + # load model registry: + config = OmegaConf.load(package.resolve("model.yaml")) + + # TODO: remove strict=False once checkpoints/imports updated to new diffusion API + regression = StormCastUNet.from_checkpoint( + package.resolve("StormCastUNet.0.0.mdlus"), + strict=False, + ) + diffusion = EDMPrecond.from_checkpoint( + package.resolve("EDMPrecond.0.0.mdlus"), + strict=False, + ) + + # Load metadata: means, stds, grid + store = zarr.storage.ZipStore(package.resolve("metadata.zarr.zip"), mode="r") + metadata = xr.open_zarr(store, zarr_format=2) + + variables = metadata["variable"].values + conditioning_variables = metadata["conditioning_variable"].values + + # Expand dims and tensorify normalization buffers + means = torch.from_numpy(metadata["means"].values[None, :, None, None]) + stds = torch.from_numpy(metadata["stds"].values[None, :, None, None]) + conditioning_means = torch.from_numpy( + metadata["conditioning_means"].values[None, :, None, None] + ) + conditioning_stds = torch.from_numpy( + metadata["conditioning_stds"].values[None, :, None, None] + ) + + # Load invariants + invariants = metadata["invariants"].sel(invariant=config.data.invariants).values + invariants = torch.from_numpy(invariants).repeat(1, 1, 1, 1) + + # EDM sampler arguments + if config.sampler_args is not None: + sampler_args = config.sampler_args + else: + sampler_args = {} + + return cls( + regression, + diffusion, + means, + stds, + invariants, + variables=variables, + conditioning_means=conditioning_means, + conditioning_stds=conditioning_stds, + conditioning_data_source=conditioning_data_source, + conditioning_variables=conditioning_variables, + time_tolerance=time_tolerance, + sampler_steps=sampler_steps, + sampler_args=sampler_args, + sda_std_obs=sda_std_obs, + sda_gamma=sda_gamma, + ) + + @torch.no_grad() + def _forward( + self, + x: torch.Tensor, + conditioning: torch.Tensor, + y_obs: torch.Tensor, + mask: torch.Tensor, + ) -> torch.Tensor: + + # Scale data + if "conditioning_means" in self._buffers: + conditioning = conditioning - self.conditioning_means + if "conditioning_stds" in self._buffers: + conditioning = conditioning / self.conditioning_stds + + x = (x - self.means) / self.stds + y_obs = (y_obs - self.means) / self.stds + + # Run regression model + invariant_tensor = self.invariants.repeat(x.shape[0], 1, 1, 1) + concats = torch.cat((x, conditioning, invariant_tensor), dim=1) + + out = self.regression_model(concats) + y_obs = y_obs - out # Convert to residual obs + + # Concat for diffusion conditioning + condition = torch.cat((x, out, invariant_tensor), dim=1) + latents = torch.randn_like(x, dtype=torch.float64) + latents = self.sampler_args["sigma_max"] * latents # Initial guess + + def _conditional_diffusion(x: torch.Tensor, t: torch.Tensor) -> torch.Tensor: + return self.diffusion_model(x, t, condition=condition) + + scheduler = EDMNoiseScheduler( + sigma_min=self.sampler_args["sigma_min"], + sigma_max=self.sampler_args["sigma_max"], + rho=self.sampler_args["rho"], + ) + + guidance = DataConsistencyDPSGuidance( + mask=mask, + y=y_obs, + std_y=self.sda_std_obs, + norm=self.sda_dps_norm, + gamma=self.sda_gamma, + sigma_fn=scheduler.sigma, + alpha_fn=scheduler.alpha, + ) + score_predictor = DPSScorePredictor( + x0_predictor=_conditional_diffusion, + x0_to_score_fn=scheduler.x0_to_score, + guidances=guidance, + ) + denoiser = scheduler.get_denoiser(score_predictor=score_predictor) + + edm_out = sample( + denoiser, + latents, + noise_scheduler=scheduler, + num_steps=self.sampler_steps, + solver="edm_stochastic_heun", + solver_options={ + "S_churn": self.sampler_args["S_churn"], + "S_min": self.sampler_args["S_min"], + "S_max": self.sampler_args["S_max"], + "S_noise": self.sampler_args["S_noise"], + }, + ) + + out += edm_out + out = out * self.stds + self.means + return out + + @staticmethod + def _points_in_polygon(points: np.ndarray, polygon: np.ndarray) -> np.ndarray: + """Vectorized ray casting point-in-polygon test. + TODO: Improved this (GPU and reduce memory requirement) + make a general purpose util maybe... + + Note + ---- + For more information see the following references: + https://observablehq.com/@tmcw/understanding-point-in-polygon + + Parameters + ---------- + points : np.ndarray + Points to test, shape [n, 2] + polygon : np.ndarray + Ordered polygon vertices, shape [m, 2] + + Returns + ------- + np.ndarray + Boolean array of shape [n], True if point is inside polygon + """ + px, py = points[:, 0], points[:, 1] # [n] + vx, vy = polygon[:, 0], polygon[:, 1] # [m] + vx_next = np.roll(vx, -1) + vy_next = np.roll(vy, -1) + + # For each edge (m) and each point (n), check if horizontal ray crosses + # Broadcasting: [m, 1] vs [1, n] -> [m, n] + crosses = (vy[:, None] > py[None, :]) != (vy_next[:, None] > py[None, :]) + dvy = vy_next[:, None] - vy[:, None] + safe_dvy = np.where(dvy == 0, 1.0, dvy) # avoid division by zero; masked later + x_intersect = (vx_next[:, None] - vx[:, None]) * ( + py[None, :] - vy[:, None] + ) / safe_dvy + vx[:, None] + hits = crosses & (px[None, :] < x_intersect) + + # Odd number of crossings = inside + return (np.sum(hits, axis=0) % 2) == 1 + + def _build_obs_tensors( + self, + obs: pd.DataFrame | None, + request_time: np.datetime64, + device: torch.device, + ) -> tuple[torch.Tensor, torch.Tensor]: + n_var = len(self.variables) + n_hrrr_y, n_hrrr_x = self.lat.shape + + y_obs = torch.zeros( + 1, n_var, n_hrrr_y, n_hrrr_x, device=device, dtype=torch.float32 + ) + mask = torch.zeros( + 1, n_var, n_hrrr_y, n_hrrr_x, device=device, dtype=torch.float32 + ) + + if obs is None or len(obs) == 0: + return y_obs, mask + + # Filter observations within tolerance window + time_filtered = filter_time_range( + obs, request_time, self._tolerance, time_column="time" + ) + + if len(time_filtered) == 0: + return y_obs, mask + + # TODO, make native cudf support + # Convert to pandas if cudf for reliable string/value access + if hasattr(time_filtered, "to_pandas"): + time_filtered = time_filtered.to_pandas() + + obs_lat = time_filtered["lat"].values.astype(np.float64) + obs_lon = time_filtered["lon"].values.astype(np.float64) + obs_var = time_filtered["variable"].values + obs_val = time_filtered["observation"].values.astype(np.float32) + + # Normalize lon to 0-360 to match HRRR grid + obs_lon = np.where(obs_lon < 0, obs_lon + 360.0, obs_lon) + + # Filter observations to those inside the curvilinear grid boundary + # using ray casting point-in-polygon on the precomputed perimeter + obs_points = np.column_stack([obs_lat, obs_lon]) + in_grid = self._points_in_polygon(obs_points, self._grid_boundary) + + if not in_grid.any(): + return y_obs, mask + + obs_lat = obs_lat[in_grid] + obs_lon = obs_lon[in_grid] + obs_var = obs_var[in_grid] + obs_val = obs_val[in_grid] + + # Find nearest HRRR grid point for each observation using a KD-tree + # to avoid allocating the full [n_obs, n_grid] distance matrix. + _, nearest_flat = self._grid_tree.query(np.column_stack([obs_lat, obs_lon])) + nearest_y = nearest_flat // n_hrrr_x + nearest_x = nearest_flat % n_hrrr_x + + # Map variable names to indices + var_to_idx = {str(v): i for i, v in enumerate(self.variables)} + var_indices = np.array([var_to_idx.get(str(v), -1) for v in obs_var]) + valid = var_indices >= 0 + + # Average multiple observations that map to the same grid cell + if valid.any(): + vi = torch.tensor(var_indices[valid], device=device, dtype=torch.long) + yi = torch.tensor(nearest_y[valid], device=device, dtype=torch.long) + xi = torch.tensor(nearest_x[valid], device=device, dtype=torch.long) + vals = torch.tensor(obs_val[valid], device=device, dtype=torch.float32) + + # Flatten (vi, yi, xi) into a single linear index for scatter ops + flat_idx = vi * (n_hrrr_y * n_hrrr_x) + yi * n_hrrr_x + xi + flat_sum = torch.zeros( + n_var * n_hrrr_y * n_hrrr_x, device=device, dtype=torch.float32 + ) + flat_cnt = torch.zeros_like(flat_sum) + flat_sum.scatter_add_(0, flat_idx, vals) + flat_cnt.scatter_add_(0, flat_idx, torch.ones_like(vals)) + + occupied = flat_cnt > 0 + flat_avg = torch.where(occupied, flat_sum / flat_cnt, flat_sum) + y_obs[0] = flat_avg.view(n_var, n_hrrr_y, n_hrrr_x) + mask[0] = occupied.float().view(n_var, n_hrrr_y, n_hrrr_x) + + return y_obs, mask + + def _fetch_and_interp_conditioning(self, x: xr.DataArray) -> xr.DataArray: + """Fetch global conditioning data and interpolate to HRRR curvilinear grid. + + Parameters + ---------- + x : xr.DataArray + Input state DataArray with time and lead_time coordinates + + Returns + ------- + xr.DataArray + Conditioning data interpolated onto the HRRR grid + """ + device = self.device + + if self.conditioning_data_source is None: + raise RuntimeError( + "StormCast has been called without initializing the model's conditioning_data_source" + ) + + c: xr.DataArray = fetch_data( + self.conditioning_data_source, + time=x.coords["time"].data, + variable=self.conditioning_variables, + lead_time=x.coords["lead_time"].data, + device=self.device, + legacy=False, + ) + + # Interpolate conditioning from regular lat/lon grid to HRRR curvilinear grid + if cp is not None and isinstance(c.data, cp.ndarray): + # GPU path: bilinear interpolation using cupy, data stays on GPU + with cp.cuda.Device(device.index or 0): + data = c.data + src_lat = cp.asarray(c.coords["lat"].values, dtype=cp.float64) + src_lon = cp.asarray(c.coords["lon"].values, dtype=cp.float64) + + target_lat_cp = cp.asarray(self.lat, dtype=cp.float64) + target_lon_cp = cp.asarray(self.lon, dtype=cp.float64) + + # Ensure ascending order for searchsorted (latitude is + # commonly descending in weather data, e.g. 90 -> -90) + if src_lat[-1] < src_lat[0]: + src_lat = src_lat[::-1] + data = data[..., ::-1, :] + if src_lon[-1] < src_lon[0]: + src_lon = src_lon[::-1] + data = data[..., :, ::-1] + + # Compute fractional indices via searchsorted (handles + # non-uniform spacing), src_lat and src_lon needs to be acending + lat_idx = cp.searchsorted(src_lat, target_lat_cp.ravel()) - 1 + lat_idx = cp.clip(lat_idx, 0, len(src_lat) - 2) + lat_idx = lat_idx.reshape(target_lat_cp.shape) + + lon_idx = cp.searchsorted(src_lon, target_lon_cp.ravel()) - 1 + lon_idx = cp.clip(lon_idx, 0, len(src_lon) - 2) + lon_idx = lon_idx.reshape(target_lon_cp.shape) + + lat0 = lat_idx + lon0 = lon_idx + lat1 = lat0 + 1 + lon1 = lon0 + 1 + + # Fractional weights between grid cells + wlat = (target_lat_cp - src_lat[lat0]) / (src_lat[lat1] - src_lat[lat0]) + wlon = (target_lon_cp - src_lon[lon0]) / (src_lon[lon1] - src_lon[lon0]) + wlat = cp.clip(wlat, 0.0, 1.0) + wlon = cp.clip(wlon, 0.0, 1.0) + + interp_data = ( + data[..., lat0, lon0] * (1 - wlat) * (1 - wlon) + + data[..., lat0, lon1] * (1 - wlat) * wlon + + data[..., lat1, lon0] * wlat * (1 - wlon) + + data[..., lat1, lon1] * wlat * wlon + ) + + c = xr.DataArray( + data=interp_data, + dims=["time", "lead_time", "variable", "hrrr_y", "hrrr_x"], + coords={ + "time": c.coords["time"], + "lead_time": c.coords["lead_time"], + "variable": c.coords["variable"], + "hrrr_y": self.hrrr_y, + "hrrr_x": self.hrrr_x, + "lat": (["hrrr_y", "hrrr_x"], self.lat), + "lon": (["hrrr_y", "hrrr_x"], self.lon), + }, + ) + else: + # CPU path: use xarray's built-in interpolation + target_lat = xr.DataArray(self.lat, dims=["hrrr_y", "hrrr_x"]) + target_lon = xr.DataArray(self.lon, dims=["hrrr_y", "hrrr_x"]) + c = c.interp(lat=target_lat, lon=target_lon, method="linear") + c = c.assign_coords( + hrrr_y=("hrrr_y", self.hrrr_y), + hrrr_x=("hrrr_x", self.hrrr_x), + lat=(["hrrr_y", "hrrr_x"], self.lat), + lon=(["hrrr_y", "hrrr_x"], self.lon), + ) + + return c + + def _to_output_dataarray( + self, + x_tensor: torch.Tensor, + output_coords: tuple[CoordSystem], + ) -> xr.DataArray: + """Convert output tensor to xr.DataArray with HRRR grid coordinates. + + Parameters + ---------- + x_tensor : torch.Tensor + Output tensor from _forward + output_coords : tuple[CoordSystem] + Output coordinate system from output_coords() + + Returns + ------- + xr.DataArray + Output DataArray with cupy backend on GPU or numpy on CPU + """ + device = self.device + (oc,) = output_coords + if device.type == "cuda" and cp is not None: + with cp.cuda.Device(device.index or 0): + out_data = cp.asarray(x_tensor.detach()) + else: + out_data = x_tensor.detach().cpu().numpy() + + return xr.DataArray( + data=out_data, + dims=list(oc.keys()), + coords={ + k: ((["hrrr_y", "hrrr_x"], v) if k in ("lat", "lon") else v) + for k, v in oc.items() + } + | { + "lat": (["hrrr_y", "hrrr_x"], self.lat), + "lon": (["hrrr_y", "hrrr_x"], self.lon), + }, + ) + + # NOTE: @torch.inference_mode() is intentionally omitted here. + # DPS guidance requires gradient computation through the denoiser for + # the score correction step; inference_mode would disable those gradients. + def __call__( + self, + x: xr.DataArray, + obs: pd.DataFrame | None, + ) -> xr.DataArray: + """Runs assimilation model 1 step. + + Parameters + ---------- + x : xr.DataArray + Input state on the HRRR curvilinear grid + obs : pd.DataFrame | None + Sparse observations DataFrame, or None for no assimilation + + Returns + ------- + xr.DataArray + Output state one time-step into the future + + Raises + ------ + RuntimeError + If conditioning data source is not initialized + """ + if self.conditioning_data_source is None: + raise RuntimeError( + "StormCast has been called without initializing the model's conditioning_data_source" + ) + + device = self.device + c = self._fetch_and_interp_conditioning(x) + + x_coords = OrderedDict({dim: x.coords[dim].values for dim in x.dims}) + output_coords = self.output_coords((x_coords,)) + + x_tensor = torch.as_tensor(x.data) + c_tensor = torch.as_tensor(c.data) + + for j, t in enumerate(x.coords["time"].data): + obs_time = t + output_coords[0]["lead_time"][0] + y_obs, mask = self._build_obs_tensors(obs, obs_time, device) + x_tensor[j, :] = self._forward(x_tensor[j, :], c_tensor[j, :], y_obs, mask) + + return self._to_output_dataarray(x_tensor, output_coords) + + def create_generator( + self, x: xr.DataArray + ) -> Generator[xr.DataArray, pd.DataFrame | None, None]: + """Creates a generator for iterative forecast with data assimilation. + + The generator yields forecast states and receives observation DataFrames + via ``send()``. At each step, conditioning data is fetched, observations + are mapped to the HRRR grid, and the diffusion model produces the next + forecast step. + + Parameters + ---------- + x : xr.DataArray + Initial state on the HRRR curvilinear grid + + Yields + ------ + xr.DataArray + Forecast state at each time step + + Receives + -------- + pd.DataFrame | None + Observations sent via ``generator.send()``. Pass ``None`` for + steps without assimilation. + + Example + ------- + >>> gen = model.create_generator(x0) + >>> state = next(gen) # yields initial state x0 + >>> state = gen.send(obs_df) # step 1 with observations + >>> state = gen.send(None) # step 2 without observations + """ + if self.conditioning_data_source is None: + raise RuntimeError( + "StormCast has been called without initializing the model's " + "conditioning_data_source" + ) + + # Yield the initial state so the caller can inspect it + obs = yield x + + try: + while True: + # Fetch and interpolate conditioning onto HRRR grid + c = self._fetch_and_interp_conditioning(x) + + # Compute output coords (advances lead_time by 1h) + x_coords = OrderedDict({dim: x.coords[dim].values for dim in x.dims}) + output_coords = self.output_coords((x_coords,)) + + # Zero-copy conversion to torch tensors + x_tensor = torch.as_tensor(x.data) + c_tensor = torch.as_tensor(c.data) + + # Run forward with observations + for j, t in enumerate(x.coords["time"].data): + obs_time = t + output_coords[0]["lead_time"][0] + y_obs, mask = self._build_obs_tensors(obs, obs_time, self.device) + x_tensor[j] = self._forward(x_tensor[j], c_tensor[j], y_obs, mask) + + # Build output DataArray and use as next input + x = self._to_output_dataarray(x_tensor, output_coords) + + # Yield forecast result and wait for next observations + obs = yield x + + except GeneratorExit: + logger.info("StormCast SDA clean up") diff --git a/earth2studio/models/da/utils.py b/earth2studio/models/da/utils.py new file mode 100644 index 000000000..c0012e195 --- /dev/null +++ b/earth2studio/models/da/utils.py @@ -0,0 +1,167 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +from __future__ import annotations + +from datetime import datetime + +import numpy as np +import pandas as pd +import torch +from loguru import logger + +try: + import cudf +except ImportError: + cudf = None + + +def validate_observation_fields( + observation: pd.DataFrame | cudf.DataFrame, required_fields: list[str] +) -> None: + """Validate that required fields are present as columns in the DataFrame. + + Parameters + ---------- + observation : pd.DataFrame | cudf.DataFrame + DataFrame observation to validate + required_fields : list[str] + List of required field/column names + + Raises + ------ + ValueError + If any required fields are missing from the DataFrame columns + """ + missing_fields = [ + field for field in required_fields if field not in observation.columns + ] + if missing_fields: + raise ValueError( + f"DataFrame missing required fields: {missing_fields}. " + f"Available columns: {list(observation.columns)}" + ) + + +def filter_time_range( + df: pd.DataFrame | cudf.DataFrame, + request_time: np.datetime64 | datetime | str, + tolerance: tuple[np.timedelta64, np.timedelta64], + time_column: str = "time", +) -> pd.DataFrame | cudf.DataFrame: + """Filter DataFrame rows where time column is within the specified tolerance range. + + Filters the DataFrame to include only rows where the time column value is within + [request_time + lower_bound, request_time + upper_bound]. Ensures the time column + is of dtype datetime64[ns]. + + Parameters + ---------- + df : pd.DataFrame | cudf.DataFrame + DataFrame to filter. Can be pandas or cudf DataFrame. + request_time : np.datetime64 | datetime | str + Reference time for filtering. Observations within the tolerance window + around this time will be included. + tolerance : tuple[np.timedelta64, np.timedelta64] + Tuple of (lower_bound, upper_bound) time deltas defining the tolerance window. + time_column : str, optional + Name of the time column in the DataFrame, by default "time" + + Returns + ------- + pd.DataFrame | cudf.DataFrame + Filtered DataFrame containing only rows within the time tolerance range. + Returns the same DataFrame type as the input (pandas or cudf). + + Raises + ------ + KeyError + If the time_column is not present in the DataFrame + """ + if time_column not in df.columns: + raise KeyError( + f"Time column '{time_column}' not found in DataFrame. " + f"Available columns: {list(df.columns)}" + ) + + request_time_ns = np.datetime64(request_time, "ns") + + # Ensure time column is datetime64[ns] + time_series = df[time_column] + if time_series.dtype != "datetime64[ns]": + df = df.copy() + # Use cudf methods if it's a cudf DataFrame, otherwise use pandas + if cudf is not None and isinstance(df, cudf.DataFrame): + df[time_column] = cudf.to_datetime(time_series).astype("datetime64[ns]") + else: + df[time_column] = pd.to_datetime(time_series).astype("datetime64[ns]") + + # Calculate time bounds + lower_bound, upper_bound = tolerance + time_min = request_time_ns + lower_bound + time_max = request_time_ns + upper_bound + + time_mask = (df[time_column] >= time_min) & (df[time_column] <= time_max) + return df[time_mask] + + +def dfseries_to_torch( + series: pd.Series | cudf.Series, + dtype: torch.dtype = torch.float32, + device: torch.device | str = "cpu", +) -> torch.Tensor: + """Convert a DataFrame series to a torch tensor with zero-copy for cudf. + + If the series is from a cudf DataFrame, uses dlpack for zero-copy transfer. + If the series is from pandas but target device is GPU, transfers the data + and warns that cudf is not being used. + + Parameters + ---------- + series : pd.Series | cudf.Series + Series to convert to torch tensor. Can be pandas or cudf Series. + dtype : torch.dtype, optional + Desired dtype for the tensor, by default torch.float32 + device : torch.device | str, optional + Target device for the tensor, by default "cpu" + + Returns + ------- + torch.Tensor + Torch tensor with the series data on the specified device + + Raises + ------ + ImportError + If cudf is required but not available + """ + device = torch.device(device) + + # Check if series is from cudf + if cudf is not None and isinstance(series, cudf.Series): + # Use dlpack for zero-copy transfer from cudf to torch + return torch.from_dlpack(series.values).to(dtype=dtype, device=device) + + # Handle pandas Series + if device.type == "cuda": + # Warn that cudf is not being used for GPU transfer + logger.warning( + "Converting pandas Series to GPU tensor. Consider installing cudf " + "for zero-copy transfer and better performance." + ) + return torch.tensor(series.values, dtype=dtype, device=device) + + # CPU case - standard conversion + return torch.tensor(series.values, dtype=dtype, device=device) diff --git a/earth2studio/models/dx/cbottle_sr.py b/earth2studio/models/dx/cbottle_sr.py index 3edcb0c71..b82321d2e 100644 --- a/earth2studio/models/dx/cbottle_sr.py +++ b/earth2studio/models/dx/cbottle_sr.py @@ -388,7 +388,6 @@ def load_model( sigma_max: int = 800, seed: int | None = None, distilled_model: bool = False, - device: str = "cpu", ) -> DiagnosticModel: """Load diagnostic model from package @@ -413,8 +412,6 @@ def load_model( distilled_model : bool, optional Whether to use the distilled model, If True, the distilled helper is used, enabling generation with fewer sampler steps, by default False - device : str - Device to load model onto, by default cpu Returns ------- @@ -437,10 +434,10 @@ def load_model( if distilled_model: sr_model = model_cls.from_pretrained( - state_path, window_function="KBD", window_alpha=1.0, device=device + state_path, window_function="KBD", window_alpha=1.0 ) else: - sr_model = model_cls.from_pretrained(state_path, device=device) + sr_model = model_cls.from_pretrained(state_path) return cls( sr_model, diff --git a/earth2studio/models/dx/corrdiff.py b/earth2studio/models/dx/corrdiff.py index 0eff57053..9186714f3 100644 --- a/earth2studio/models/dx/corrdiff.py +++ b/earth2studio/models/dx/corrdiff.py @@ -45,21 +45,28 @@ from earth2studio.utils.type import CoordSystem try: - from physicsnemo.models import Module as PhysicsNemoModule - from physicsnemo.utils.corrdiff import ( + from physicsnemo import Module as PhysicsNemoModule + from physicsnemo.diffusion.generate.legacy_generate import ( diffusion_step, regression_step, ) - from physicsnemo.utils.generative import ( - StackedRandomGenerator, + from physicsnemo.diffusion.preconditioners.legacy import EDMPrecondSR + from physicsnemo.diffusion.samplers.legacy_deterministic_sampler import ( deterministic_sampler, + ) + from physicsnemo.diffusion.samplers.legacy_stochastic_sampler import ( stochastic_sampler, ) + from physicsnemo.diffusion.utils import StackedRandomGenerator + from physicsnemo.models.diffusion_unets import UNet except ImportError: OptionalDependencyFailure("corrdiff") PhysicsNemoModule = None StackedRandomGenerator = None deterministic_sampler = None + stochastic_sampler = None + EDMPrecondSR = None + UNet = None @check_optional_dependencies() @@ -1394,7 +1401,7 @@ def load_model(cls, package: Package, device: str | None = None) -> DiagnosticMo with zipfile.ZipFile(checkpoint_zip, "r") as zip_ref: zip_ref.extractall(checkpoint_zip.parent) - residual = PhysicsNemoModule.from_checkpoint( + residual = EDMPrecondSR.from_checkpoint( str( checkpoint_zip.parent / Path("corrdiff_inference_package/checkpoints/diffusion.mdlus") @@ -1407,7 +1414,7 @@ def load_model(cls, package: Package, device: str | None = None) -> DiagnosticMo residual = residual.to(device) residual = residual.to(memory_format=torch.channels_last) - regression = PhysicsNemoModule.from_checkpoint( + regression = UNet.from_checkpoint( str( checkpoint_zip.parent / Path("corrdiff_inference_package/checkpoints/regression.mdlus") diff --git a/earth2studio/models/dx/corrdiff_cmip6.py b/earth2studio/models/dx/corrdiff_cmip6.py index e8bbcabee..1e83cd9c2 100644 --- a/earth2studio/models/dx/corrdiff_cmip6.py +++ b/earth2studio/models/dx/corrdiff_cmip6.py @@ -37,14 +37,20 @@ from earth2studio.utils.type import CoordSystem, LeadTimeArray try: - from physicsnemo.models import Module as PhysicsNemoModule - from physicsnemo.utils.corrdiff import diffusion_step, regression_step + from physicsnemo.diffusion.generate.legacy_generate import ( + diffusion_step, + regression_step, + ) + from physicsnemo.diffusion.preconditioners.legacy import EDMPrecondSuperResolution + from physicsnemo.models.diffusion_unets import UNet from physicsnemo.utils.zenith_angle import cos_zenith_angle except ImportError: # pragma: no cover OptionalDependencyFailure("corrdiff") diffusion_step = None # type: ignore[assignment] regression_step = None # type: ignore[assignment] cos_zenith_angle = None # type: ignore[assignment] + UNet = None # type: ignore[assignment] + EDMPrecondSuperResolution = None # type: ignore[assignment] class CorrDiffCMIP6(CorrDiff): @@ -430,16 +436,14 @@ def load_model( # Load the base CorrDiff model from the package. residual = ( - PhysicsNemoModule.from_checkpoint( + EDMPrecondSuperResolution.from_checkpoint( package.resolve("diffusion.mdlus"), strict=False ) .eval() .to(device) ) regression = ( - PhysicsNemoModule.from_checkpoint( - package.resolve("regression.mdlus"), strict=False - ) + UNet.from_checkpoint(package.resolve("regression.mdlus"), strict=False) .eval() .to(device) ) diff --git a/earth2studio/models/nn/afno_ssrd.py b/earth2studio/models/nn/afno_ssrd.py index 5b2e180bb..eba9e7aa7 100644 --- a/earth2studio/models/nn/afno_ssrd.py +++ b/earth2studio/models/nn/afno_ssrd.py @@ -18,8 +18,8 @@ import physicsnemo # noqa: F401 for docs import torch import torch.nn as nn +from physicsnemo import Module from physicsnemo.models.afno.afno import Block -from physicsnemo.models.module import Module Tensor = torch.Tensor diff --git a/earth2studio/models/nn/atlas.py b/earth2studio/models/nn/atlas.py index 3346d3cbf..671bebb7a 100644 --- a/earth2studio/models/nn/atlas.py +++ b/earth2studio/models/nn/atlas.py @@ -45,7 +45,9 @@ @cache def get_isht(nlat, nlon, grid="equiangular", norm="ortho", device=None): - return InverseRealSHT(nlat, nlon, grid=grid, norm=norm).to(device=device) + return InverseRealSHT( + nlat, nlon, lmax=nlat, mmax=nlon // 2 + 1, grid=grid, norm=norm + ).to(device=device) def spherical_white_noise(shape, scale=3.56, device=None, studentt_deg=None): @@ -55,19 +57,21 @@ def spherical_white_noise(shape, scale=3.56, device=None, studentt_deg=None): if len(shape) < 2: raise ValueError(f"Shape must have at least 2 dimensions, got {shape}") + isht = get_isht(shape[-2], shape[-1], device=device) + lmax = isht.lmax + mmax = isht.mmax + if studentt_deg is None: - noise = torch.randn(shape[0:-1] + [(shape[-1] // 2) + 1] + [2], device=device) + noise = torch.randn(shape[0:-2] + [lmax, mmax] + [2], device=device) else: dist = torch.distributions.studentT.StudentT(studentt_deg) - noise = dist.sample(shape[0:-1] + [(shape[-1] // 2) + 1] + [2]).to(device) + noise = dist.sample(shape[0:-2] + [lmax, mmax] + [2]).to(device) noise = (1.0 / math.sqrt(float(shape[-1] * shape[-2]))) * scale * noise noise = torch.view_as_complex(noise) noise = torch.tril(noise) - isht = get_isht(shape[-2], shape[-1], device=device) - with torch.amp.autocast("cuda", enabled=False): return isht(noise) @@ -1305,12 +1309,9 @@ def forward( # Conditioning t = self.t_embedder(t) - # print(t.shape) - if self.embedding_table is not None and label is not None: t = t + self.embedding_table(label) - # print(t.shape) # Apply DiT blocks for j, block in enumerate(self.blocks): if j >= self.checkpoint: diff --git a/earth2studio/models/nn/stormscope_util.py b/earth2studio/models/nn/stormscope_util.py index 729005397..4a9c75f5a 100644 --- a/earth2studio/models/nn/stormscope_util.py +++ b/earth2studio/models/nn/stormscope_util.py @@ -18,6 +18,7 @@ import torch import torch.nn as nn +from loguru import logger from earth2studio.utils.imports import ( OptionalDependencyFailure, @@ -25,7 +26,7 @@ ) try: - from physicsnemo.experimental.models.dit.dit import DiT as PNM_DiT + from physicsnemo.models import DiT as PNM_DiT except ImportError: OptionalDependencyFailure("stormscope") PNM_DiT = None # type: ignore[assignment] @@ -78,13 +79,13 @@ def __init__( self.p_min = p_min self.x_offset = x_offset self.slope = slope - print(f"sigma_max_dropout: {self.sigma_max_dropout}") - print(f"sigma_min_dropout: {self.sigma_min_dropout}") - print(f"dropout_function_type: {self.dropout_function_type}") - print(f"p_max: {self.p_max}") - print(f"p_min: {self.p_min}") - print(f"x_offset: {self.x_offset}") - print(f"slope: {self.slope}") + logger.debug(f"sigma_max_dropout: {self.sigma_max_dropout}") + logger.debug(f"sigma_min_dropout: {self.sigma_min_dropout}") + logger.debug(f"dropout_function_type: {self.dropout_function_type}") + logger.debug(f"p_max: {self.p_max}") + logger.debug(f"p_min: {self.p_min}") + logger.debug(f"x_offset: {self.x_offset}") + logger.debug(f"slope: {self.slope}") else: self.noise_dependent_dropout = False diff --git a/earth2studio/models/px/aifsens.py b/earth2studio/models/px/aifsens.py index 4f1f48b8e..3168343e9 100644 --- a/earth2studio/models/px/aifsens.py +++ b/earth2studio/models/px/aifsens.py @@ -818,8 +818,8 @@ def _fill_input(self, x: torch.Tensor, coords: CoordSystem) -> torch.Tensor: batch, time, lead, _, height, width = x.shape - # Prepare empty output tensor with VARIABLE dimension - out = torch.empty( + # Prepare output tensor with VARIABLE dimension (zeros to avoid uninitialised memory) + out = torch.zeros( (batch, time, lead, len(VARIABLES), height, width), device=x.device, ) @@ -848,6 +848,7 @@ def _fill_input(self, x: torch.Tensor, coords: CoordSystem) -> torch.Tensor: keep = torch.isin( all_indices, self.model.data_indices.data.output.forcing, invert=True ) + out = out[:, :, :, keep, ...] # Update coordinates with remaining variable names diff --git a/earth2studio/models/px/cbottle_video.py b/earth2studio/models/px/cbottle_video.py index 93b12d7a2..4453fe0ea 100644 --- a/earth2studio/models/px/cbottle_video.py +++ b/earth2studio/models/px/cbottle_video.py @@ -16,7 +16,7 @@ from collections import OrderedDict from collections.abc import Generator, Iterator -from datetime import datetime +from datetime import datetime, timezone from enum import IntEnum, StrEnum import numpy as np @@ -376,14 +376,20 @@ def reorder(x: torch.Tensor) -> torch.Tensor: # Set up time tensors times0 = [ - datetime.fromtimestamp(t.astype("datetime64[s]").astype(int)) + datetime.fromtimestamp( + t.astype("datetime64[s]").astype(int), tz=timezone.utc + ) for t in times.reshape(-1) ] second_of_day = np.array( [(t.hour * 3600) + (t.minute * 60) + t.second for t in times0] ).reshape(times.shape) day_of_year = np.array( - [(t - datetime(t.year, 1, 1)).total_seconds() / (86400.0) for t in times0] + [ + (t - datetime(t.year, 1, 1, tzinfo=timezone.utc)).total_seconds() + / (86400.0) + for t in times0 + ] ).reshape(times.shape) second_of_day = torch.tensor(second_of_day.astype(np.float32), device=device) day_of_year = torch.tensor(day_of_year.astype(np.float32), device=device) diff --git a/earth2studio/models/px/dlesym.py b/earth2studio/models/px/dlesym.py index 8c4be9b29..bcdbbb4d1 100644 --- a/earth2studio/models/px/dlesym.py +++ b/earth2studio/models/px/dlesym.py @@ -36,7 +36,7 @@ try: import earth2grid from omegaconf import OmegaConf - from physicsnemo.models import Module + from physicsnemo import Module from physicsnemo.utils.insolation import insolation except ImportError: OptionalDependencyFailure("dlesym") diff --git a/earth2studio/models/px/fcn.py b/earth2studio/models/px/fcn.py index 17588ec7c..e25d810e1 100644 --- a/earth2studio/models/px/fcn.py +++ b/earth2studio/models/px/fcn.py @@ -14,10 +14,8 @@ # See the License for the specific language governing permissions and # limitations under the License. -import zipfile from collections import OrderedDict from collections.abc import Generator, Iterator -from pathlib import Path import numpy as np import torch @@ -81,7 +79,7 @@ class FCN(torch.nn.Module, AutoModelMixin, PrognosticMixin): paper. For additional information see the following resources: - https://arxiv.org/abs/2202.11214 - - https://catalog.ngc.nvidia.com/orgs/nvidia/teams/modulus/models/modulus_fcn + - https://huggingface.co/nvidia/fourcastnet1 Parameters ---------- @@ -177,7 +175,7 @@ def __str__( def load_default_package(cls) -> Package: """Load prognostic package""" return Package( - "ngc://models/nvidia/modulus/modulus_fcn@v0.2", + "hf://nvidia/fourcastnet1@c67a63995f6c8e0e557eb3d791f32f437e9b02d5", cache_options={ "cache_storage": Package.default_cache("fcn"), "same_names": True, @@ -191,20 +189,16 @@ def load_model( package: Package, ) -> PrognosticModel: """Load prognostic from package""" - fcn_zip = Path(package.resolve("fcn.zip")) - # Have to manually unzip here. Should not zip checkpoints in the future - with zipfile.ZipFile(fcn_zip, "r") as zip_ref: - zip_ref.extractall(fcn_zip.parent) + try: + package.resolve("config.json") # HF tracking download statistics + except FileNotFoundError: + pass - model = AFNO.from_checkpoint(str(fcn_zip.parent / Path("fcn/fcn.mdlus"))) + model = AFNO.from_checkpoint(package.resolve("fcn.mdlus")) model.eval() - local_center = torch.Tensor( - np.load(str(fcn_zip.parent / Path("fcn/global_means.npy"))) - ) - local_std = torch.Tensor( - np.load(str(fcn_zip.parent / Path("fcn/global_stds.npy"))) - ) + local_center = torch.Tensor(np.load(package.resolve("global_means.npy"))) + local_std = torch.Tensor(np.load(package.resolve("global_stds.npy"))) return cls(model, center=local_center, scale=local_std) @torch.inference_mode() diff --git a/earth2studio/models/px/graphcast_operational.py b/earth2studio/models/px/graphcast_operational.py index cd036fa25..e29881d31 100644 --- a/earth2studio/models/px/graphcast_operational.py +++ b/earth2studio/models/px/graphcast_operational.py @@ -237,7 +237,7 @@ def __init__( ] ), "variable": np.array(VARIABLES), - "lat": np.linspace(-90, 90, 721, endpoint=True), + "lat": np.linspace(90, -90, 721, endpoint=True), "lon": np.linspace(0, 360, 1440, endpoint=False), } ) @@ -248,7 +248,7 @@ def __init__( "time": np.empty(0), "lead_time": np.array([np.timedelta64(6, "h")]), "variable": np.array(VARIABLES + ["tp06"]), - "lat": np.linspace(-90, 90, 721, endpoint=True), + "lat": np.linspace(90, -90, 721, endpoint=True), "lon": np.linspace(0, 360, 1440, endpoint=False), } ) @@ -456,7 +456,7 @@ def _default_generator( # Get device device = x.device - # first batch has 2 times + # first batch has 2 times (lead_times) coords_out["lead_time"] = coords["lead_time"][1:] # Add on zeros slice for tp06 out = torch.cat( @@ -469,8 +469,11 @@ def _default_generator( # Forward is identity operator coords = self.output_coords(coords) - # Get next prediction - x = self.iterator_result_to_tensor(next(self.iterator)) + # Get next prediction from all time iterators + results = [ + self.iterator_result_to_tensor(next(it)) for it in self.iterators + ] + x = torch.cat(results, dim=1) if len(results) > 1 else results[0] # Rear hook x, coords = self.rear_hook(x, coords) @@ -503,24 +506,37 @@ def create_iterator( """ with jax.default_device(self.get_jax_device_from_tensor(x)): - batch, target_lead_times = self.from_dataarray_to_dataset( - xr.DataArray(x.cpu(), coords=coords), 6 - ) + # Create a separate JAX iterator for each init time + # (rollout._get_next_inputs only supports single time) + time_dim = list(coords.keys()).index("time") + n_times = len(coords["time"]) + self.iterators = [] + + for t in range(n_times): + x_t = x.narrow(time_dim, t, 1) + coords_t = coords.copy() + coords_t["time"] = coords["time"][t : t + 1] + + batch, target_lead_times = self.from_dataarray_to_dataset( + xr.DataArray(x_t.cpu(), coords=coords_t), 6 + ) - inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( - batch, - target_lead_times=target_lead_times, - **dataclasses.asdict(self.ckpt.task_config), - ) + inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( + batch, + target_lead_times=target_lead_times, + **dataclasses.asdict(self.ckpt.task_config), + ) - self.iterator = self._chunked_prediction_generator( - predictor_fn=self.run_forward, - rng=self.prng_key, - inputs=inputs, - targets_template=targets * np.nan, - batch=batch, - forcings=forcings, - ) + self.iterators.append( + self._chunked_prediction_generator( + predictor_fn=self.run_forward, + rng=self.prng_key, + inputs=inputs, + targets_template=targets * np.nan, + batch=batch, + forcings=forcings, + ) + ) yield from self._default_generator(x, coords) @@ -561,7 +577,9 @@ def iterator_result_to_tensor(self, dataset: xr.Dataset) -> torch.Tensor: .T.transpose(..., "time", "lead_time", "variable", "lat", "lon") ) - return torch.from_numpy(dataarray.to_numpy().copy()) + out = torch.from_numpy(dataarray.to_numpy().copy()) + out = out.flip(-2) # Flip lat from ascending (-90->90, JAX native) to (90->-90) + return out @staticmethod def get_jax_device_from_tensor(x: torch.Tensor) -> "jax.Device": @@ -600,24 +618,35 @@ def __call__( # Map lat and lon if needed x, coords = map_coords(x, coords, self.input_coords()) - data, target_lead_times = self.from_dataarray_to_dataset( - xr.DataArray(x.cpu(), coords=coords), 6 - ) + # Loop over time dimension (JAX model supports single init time only) + time_dim = list(coords.keys()).index("time") + n_times = len(coords["time"]) + results = [] + for t in range(n_times): + x_t = x.narrow(time_dim, t, 1) + coords_t = coords.copy() + coords_t["time"] = coords["time"][t : t + 1] + + data, target_lead_times = self.from_dataarray_to_dataset( + xr.DataArray(x_t.cpu(), coords=coords_t), 6 + ) - inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( - data, - target_lead_times=target_lead_times, - **dataclasses.asdict(self.ckpt.task_config), - ) + inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( + data, + target_lead_times=target_lead_times, + **dataclasses.asdict(self.ckpt.task_config), + ) - predictions = rollout.chunked_prediction( - self.run_forward, - rng=self.prng_key, - inputs=inputs, - targets_template=targets * np.nan, - forcings=forcings, - ) - out = self.iterator_result_to_tensor(predictions) + predictions = rollout.chunked_prediction( + self.run_forward, + rng=self.prng_key, + inputs=inputs, + targets_template=targets * np.nan, + forcings=forcings, + ) + results.append(self.iterator_result_to_tensor(predictions)) + + out = torch.cat(results, dim=1) if n_times > 1 else results[0] output_coords = self.output_coords(coords) # Convert to device diff --git a/earth2studio/models/px/graphcast_small.py b/earth2studio/models/px/graphcast_small.py index 0650df74d..0afe99bdf 100644 --- a/earth2studio/models/px/graphcast_small.py +++ b/earth2studio/models/px/graphcast_small.py @@ -169,7 +169,7 @@ class GraphCastSmall(torch.nn.Module, AutoModelMixin, PrognosticMixin): A smaller, low-resolution version of GraphCast (1 degree resolution, 13 pressure levels and a smaller mesh), trained on ERA5 data from 1979 to 2015. This model is useful for running with lower memory and compute constraints while maintaining good - forecast skill. The model operates on a 1-degree lat-lon grid (south-pole including) + forecast skill. The model operates on a 1-degree lat-lon grid (pole including) equirectangular grid with 85 variables including: - Surface variables (2m temperature, 10m winds, etc.) @@ -238,7 +238,7 @@ def __init__( ] ), "variable": np.array(VARIABLES), - "lat": np.linspace(-90, 90, 181, endpoint=True), + "lat": np.linspace(90, -90, 181, endpoint=True), "lon": np.linspace(0, 360, 360, endpoint=False), } ) @@ -249,7 +249,7 @@ def __init__( "time": np.empty(0), "lead_time": np.array([np.timedelta64(6, "h")]), "variable": np.array(VARIABLES), - "lat": np.linspace(-90, 90, 181, endpoint=True), + "lat": np.linspace(90, -90, 181, endpoint=True), "lon": np.linspace(0, 360, 360, endpoint=False), } ) @@ -457,7 +457,7 @@ def _default_generator( # Get device device = x.device - # first batch has 2 times + # first batch has 2 times (lead_times) coords_out = coords.copy() coords_out["lead_time"] = coords["lead_time"][1:] yield x[:, :, 1:, ...], coords_out @@ -467,8 +467,11 @@ def _default_generator( # Forward is identity operator coords = self.output_coords(coords) - # Get next prediction - x = self.iterator_result_to_tensor(next(self.iterator)) + # Get next prediction from all time iterators + results = [ + self.iterator_result_to_tensor(next(it)) for it in self.iterators + ] + x = torch.cat(results, dim=1) if len(results) > 1 else results[0] # Rear hook x, coords = self.rear_hook(x, coords) @@ -501,24 +504,37 @@ def create_iterator( """ with jax.default_device(self.get_jax_device_from_tensor(x)): - batch, target_lead_times = self.from_dataarray_to_dataset( - xr.DataArray(x.cpu(), coords=coords), 6 - ) + # Create a separate JAX iterator for each init time + # (rollout._get_next_inputs only supports single time) + time_dim = list(coords.keys()).index("time") + n_times = len(coords["time"]) + self.iterators = [] + + for t in range(n_times): + x_t = x.narrow(time_dim, t, 1) + coords_t = coords.copy() + coords_t["time"] = coords["time"][t : t + 1] + + batch, target_lead_times = self.from_dataarray_to_dataset( + xr.DataArray(x_t.cpu(), coords=coords_t), 6 + ) - inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( - batch, - target_lead_times=target_lead_times, - **dataclasses.asdict(self.ckpt.task_config), - ) + inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( + batch, + target_lead_times=target_lead_times, + **dataclasses.asdict(self.ckpt.task_config), + ) - self.iterator = self._chunked_prediction_generator( - predictor_fn=self.run_forward, - rng=self.prng_key, - inputs=inputs, - targets_template=targets * np.nan, - batch=batch, - forcings=forcings, - ) + self.iterators.append( + self._chunked_prediction_generator( + predictor_fn=self.run_forward, + rng=self.prng_key, + inputs=inputs, + targets_template=targets * np.nan, + batch=batch, + forcings=forcings, + ) + ) yield from self._default_generator(x, coords) @@ -559,7 +575,9 @@ def iterator_result_to_tensor(self, dataset: xr.Dataset) -> torch.Tensor: .T.transpose(..., "time", "lead_time", "variable", "lat", "lon") ) - return torch.from_numpy(dataarray.to_numpy().copy()) + out = torch.from_numpy(dataarray.to_numpy().copy()) + out = out.flip(-2) # Flip lat from ascending (-90->90, JAX native) to (90->-90) + return out @staticmethod def get_jax_device_from_tensor(x: torch.Tensor) -> "jax.Device": @@ -598,24 +616,35 @@ def __call__( # Map lat and lon if needed x, coords = map_coords(x, coords, self.input_coords()) - data, target_lead_times = self.from_dataarray_to_dataset( - xr.DataArray(x.cpu(), coords=coords), 6 - ) + # Loop over time dimension (JAX model supports single init time only) + time_dim = list(coords.keys()).index("time") + n_times = len(coords["time"]) + results = [] + for t in range(n_times): + x_t = x.narrow(time_dim, t, 1) + coords_t = coords.copy() + coords_t["time"] = coords["time"][t : t + 1] + + data, target_lead_times = self.from_dataarray_to_dataset( + xr.DataArray(x_t.cpu(), coords=coords_t), 6 + ) - inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( - data, - target_lead_times=target_lead_times, - **dataclasses.asdict(self.ckpt.task_config), - ) + inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( + data, + target_lead_times=target_lead_times, + **dataclasses.asdict(self.ckpt.task_config), + ) - predictions = rollout.chunked_prediction( - self.run_forward, - rng=self.prng_key, - inputs=inputs, - targets_template=targets * np.nan, - forcings=forcings, - ) - out = self.iterator_result_to_tensor(predictions) + predictions = rollout.chunked_prediction( + self.run_forward, + rng=self.prng_key, + inputs=inputs, + targets_template=targets * np.nan, + forcings=forcings, + ) + results.append(self.iterator_result_to_tensor(predictions)) + + out = torch.cat(results, dim=1) if n_times > 1 else results[0] output_coords = self.output_coords(coords) # Convert to device diff --git a/earth2studio/models/px/stormcast.py b/earth2studio/models/px/stormcast.py index dea2ec454..5a0d2aa73 100644 --- a/earth2studio/models/px/stormcast.py +++ b/earth2studio/models/px/stormcast.py @@ -43,11 +43,15 @@ try: from omegaconf import OmegaConf - from physicsnemo.models import Module as PhysicsNemoModule - from physicsnemo.utils.generative import deterministic_sampler + from physicsnemo.diffusion.preconditioners.legacy import EDMPrecond + from physicsnemo.diffusion.samplers.legacy_deterministic_sampler import ( + deterministic_sampler, + ) + from physicsnemo.models.diffusion_unets import StormCastUNet except ImportError: OptionalDependencyFailure("stormcast") - PhysicsNemoModule = None + StormCastUNet = None + EDMPrecond = None OmegaConf = None deterministic_sampler = None @@ -287,11 +291,14 @@ def load_model( # load model registry: config = OmegaConf.load(package.resolve("model.yaml")) - regression = PhysicsNemoModule.from_checkpoint( - package.resolve("StormCastUNet.0.0.mdlus") + # TODO: remove strict=False once checkpoints/imports updated to new diffusion API + regression = StormCastUNet.from_checkpoint( + package.resolve("StormCastUNet.0.0.mdlus"), + strict=False, ) - diffusion = PhysicsNemoModule.from_checkpoint( - package.resolve("EDMPrecond.0.0.mdlus") + diffusion = EDMPrecond.from_checkpoint( + package.resolve("EDMPrecond.0.0.mdlus"), + strict=False, ) # Load metadata: means, stds, grid diff --git a/earth2studio/models/px/stormscope.py b/earth2studio/models/px/stormscope.py index 9e97aed93..803f96e7c 100644 --- a/earth2studio/models/px/stormscope.py +++ b/earth2studio/models/px/stormscope.py @@ -46,7 +46,7 @@ from earth2studio.utils.type import CoordSystem try: - from physicsnemo.models import Module + from physicsnemo import Module from physicsnemo.utils.zenith_angle import cos_zenith_angle except ImportError: OptionalDependencyFailure("stormscope") diff --git a/earth2studio/perturbation/gaussian.py b/earth2studio/perturbation/gaussian.py index 4270169cd..5809db6d9 100644 --- a/earth2studio/perturbation/gaussian.py +++ b/earth2studio/perturbation/gaussian.py @@ -232,16 +232,18 @@ def __init__( self.isht = InverseRealSHT( self.nlat, 2 * self.nlat, grid=grid, norm="backward" ).to(dtype=dtype) + self.lmax = self.isht.lmax + self.mmax = self.isht.mmax r_earth = 6.371e6 # kT is defined on slide 7 self.kT = (length_scale / r_earth) ** 2 / 2 - F0 = self.calculateF0(self.sigma, self.phi, self.nlat, self.kT) + F0 = self.calculateF0(self.sigma, self.phi, self.lmax, self.kT) prods = ( - torch.tensor([j * (j + 1) for j in range(0, self.nlat)]) - .view(self.nlat, 1) - .repeat(1, self.nlat + 1) + torch.tensor([j * (j + 1) for j in range(0, self.lmax)]) + .view(self.lmax, 1) + .repeat(1, self.mmax) ) sigma_n = torch.tril(torch.exp(-self.kT * prods / 2) * F0) @@ -260,7 +262,7 @@ def __init__( # in the call function self.gaussian_noise = torch.distributions.normal.Normal(self.mean, self.var) xi = self.gaussian_noise.sample( - torch.Size((self.N, self.nlat, self.nlat + 1, 2)) + torch.Size((self.N, self.lmax, self.mmax, 2)) ).squeeze() xi = torch.view_as_complex(xi) @@ -271,13 +273,13 @@ def __init__( self.register_buffer("coeff", coeff) def calculateF0( - self, sigma: float, phi: float, nlat: int, kT: float + self, sigma: float, phi: float, lmax: int, kT: float ) -> torch.Tensor: """This function scales the coefficients such that their grid-point standarddeviation is sigma. sigma is the desired variance phi is a np.exp(-dt/time_scale) """ numerator = sigma**2 * (1 - (phi**2)) - wavenumbers = torch.arange(1, nlat) + wavenumbers = torch.arange(1, lmax) denominator = (2 * wavenumbers + 1) * torch.exp( -kT * wavenumbers * (wavenumbers + 1) ) @@ -298,7 +300,7 @@ def forward(self, x: torch.Tensor, time: np.datetime64 = None) -> torch.Tensor: # Sample Gaussian noise. # TODO why??? for next step maybe? xi = self.gaussian_noise.sample( - torch.Size((self.N, self.nlat, self.nlat + 1, 2)) + torch.Size((self.N, self.lmax, self.mmax, 2)) ).squeeze() xi = torch.view_as_complex(xi) diff --git a/earth2studio/perturbation/spherical.py b/earth2studio/perturbation/spherical.py index 995d53f81..29ce383ea 100644 --- a/earth2studio/perturbation/spherical.py +++ b/earth2studio/perturbation/spherical.py @@ -203,12 +203,14 @@ def __init__( .to(dtype=dtype) .to(device=device) ) + self.lmax = self.isht.lmax + self.mmax = self.isht.mmax # Square root of the eigenvalues of C. sqrt_eig = ( - torch.tensor([j * (j + 1) for j in range(self.nlat)], device=device) - .view(self.nlat, 1) - .repeat(1, self.nlat + 1) + torch.tensor([j * (j + 1) for j in range(self.lmax)], device=device) + .view(self.lmax, 1) + .repeat(1, self.mmax) ) sqrt_eig = torch.tril( sigma * (((sqrt_eig / radius**2) + tau**2) ** (-alpha / 2.0)) @@ -232,7 +234,7 @@ def forward(self, N: int, xi: torch.Tensor | None = None) -> torch.Tensor: N : int Number of functions to sample. xi : torch.Tensor, default is None - Noise is a complex tensor of size (N, nlat, nlat+1). + Noise is a complex tensor of size (N, lmax, mmax). If None, new Gaussian noise is sampled. If xi is provided, N is ignored. @@ -246,7 +248,7 @@ def forward(self, N: int, xi: torch.Tensor | None = None) -> torch.Tensor: if xi is None: gaussian_noise = torch.distributions.normal.Normal(self.mean, self.var) xi = gaussian_noise.sample( - torch.Size((N, self.nlat, self.nlat + 1, 2)) + torch.Size((N, self.lmax, self.mmax, 2)) ).squeeze() xi = torch.view_as_complex(xi) diff --git a/earth2studio/run.py b/earth2studio/run.py index 562a5d082..706acaa93 100644 --- a/earth2studio/run.py +++ b/earth2studio/run.py @@ -23,7 +23,7 @@ from loguru import logger from tqdm import tqdm -from earth2studio.data import DataSource, fetch_data +from earth2studio.data import DataSource, ForecastSource, fetch_data from earth2studio.io import IOBackend from earth2studio.models.dx import DiagnosticModel from earth2studio.models.px import PrognosticModel @@ -158,7 +158,7 @@ def diagnostic( nsteps: int, prognostic: PrognosticModel, diagnostic: DiagnosticModel, - data: DataSource, + data: DataSource | ForecastSource, io: IOBackend, output_coords: CoordSystem = OrderedDict({}), device: torch.device | None = None, @@ -178,7 +178,7 @@ def diagnostic( Prognostic model diagnostic: DiagnosticModel Diagnostic model, must be on same coordinate axis as prognostic - data : DataSource + data : DataSource | ForecastSource Data source io : IOBackend IO object @@ -401,9 +401,10 @@ def ensemble( # Expand x, coords for ensemble mini_batch_size = min(batch_size, nensemble - batch_id) - coords = { - "ensemble": np.arange(batch_id, batch_id + mini_batch_size) - } | coords0.copy() + coords = ( + OrderedDict({"ensemble": np.arange(batch_id, batch_id + mini_batch_size)}) + | coords0.copy() + ) # Unsqueeze x for batching ensemble x = x.unsqueeze(0).repeat(mini_batch_size, *([1] * x.ndim)) diff --git a/earth2studio/serve/client/__init__.py b/earth2studio/serve/client/__init__.py new file mode 100644 index 000000000..0df5e8698 --- /dev/null +++ b/earth2studio/serve/client/__init__.py @@ -0,0 +1,15 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. diff --git a/earth2studio/serve/client/client.py b/earth2studio/serve/client/client.py new file mode 100644 index 000000000..ecbaa6eec --- /dev/null +++ b/earth2studio/serve/client/client.py @@ -0,0 +1,550 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + + +import io +import json +import time +from typing import Any, cast +from urllib.parse import urljoin + +import requests # type: ignore[import-untyped] +from requests.adapters import HTTPAdapter # type: ignore[import-untyped] +from requests.packages.urllib3.util.retry import Retry # type: ignore[import-untyped] + +from earth2studio.serve.client.exceptions import ( + APIConnectionError as ClientConnectionError, +) +from earth2studio.serve.client.exceptions import ( + BadRequestError, + Earth2StudioAPIError, + InferenceRequestNotFoundError, + InternalServerError, + RequestTimeoutError, +) +from earth2studio.serve.client.models import ( + HealthStatus, + InferenceRequest, + InferenceRequestResponse, + InferenceRequestResults, + InferenceRequestStatus, + RequestStatus, + StorageType, +) + + +class Earth2StudioClient: + """ + Python client for Earth2Studio REST API. + + Parameters + ---------- + base_url : str, optional + Base URL of the Earth2Studio API server. Default is "http://localhost:8000". + workflow_name : str, optional + Name of the workflow to use. Default is "deterministic_earth2_workflow". + timeout : float, optional + Request timeout in seconds. Default is 30.0. + max_retries : int, optional + Maximum number of retries for failed requests. Default is 3. + retry_backoff_factor : float, optional + Backoff factor for retries. Default is 0.3. + token : str, optional + Optional authentication token (sent as Bearer token in Authorization header). + + Examples + -------- + >>> client = Earth2StudioClient(base_url="http://localhost:8000") + >>> health = client.health_check() + >>> print(health.status) + healthy + + With authentication: + + >>> client = Earth2StudioClient(base_url="http://localhost:8000", token="your-token") + """ + + def __init__( + self, + base_url: str = "http://localhost:8000", + workflow_name: str = "deterministic_earth2_workflow", + timeout: float = 30.0, + max_retries: int = 3, + retry_backoff_factor: float = 0.3, + token: str | None = None, + ): + self.base_url = base_url.rstrip("/") + self.workflow_name = workflow_name + self.timeout = timeout + self.token = token + + # Create session with retry strategy + self.session = requests.Session() + retry_strategy = Retry( + total=max_retries, + backoff_factor=retry_backoff_factor, + status_forcelist=[429, 500, 502, 503, 504], + ) + adapter = HTTPAdapter(max_retries=retry_strategy) + self.session.mount("http://", adapter) + self.session.mount("https://", adapter) + + # Set default headers + headers = { + "Content-Type": "application/json", + "Accept": "application/json", + } + # Add authorization header if token is provided + if token: + headers["Authorization"] = f"Bearer {token}" + self.session.headers.update(headers) + + def _make_request( + self, + method: str, + endpoint: str, + json_data: dict | None = None, + params: dict | None = None, + return_response: bool = False, + stream: bool = False, + timeout: float | None = None, + ) -> dict | requests.Response: + """ + Make an HTTP request with error handling. + + Parameters + ---------- + method : str + HTTP method (GET, POST, etc.). + endpoint : str + API endpoint path. + json_data : dict, optional + JSON data for request body. + params : dict, optional + Query parameters. + return_response : bool, optional + If True, return raw Response object instead of parsed JSON. + stream : bool, optional + If True, enable streaming for large responses. + timeout : float, optional + Timeout in seconds. If None, uses client default. + + Returns + ------- + dict or requests.Response + Parsed JSON response (if return_response=False), or raw Response + object (if return_response=True). + + Raises + ------ + RequestTimeoutError + If the request times out. + APIConnectionError + If the connection fails. + Earth2StudioAPIError + For other request failures or non-2xx responses. + """ + url = urljoin(self.base_url + "/", endpoint.lstrip("/")) + timeout = self.timeout if timeout is None else timeout + try: + response = self.session.request( + method=method, + url=url, + json=json_data, + params=params, + timeout=timeout, + stream=stream, + ) + except requests.exceptions.Timeout: + raise RequestTimeoutError( + f"Request to {url} timed out after {timeout} seconds" + ) + except requests.exceptions.ConnectionError as e: + raise ClientConnectionError(f"Failed to connect to {url}: {str(e)}") + except requests.exceptions.RequestException as e: + raise Earth2StudioAPIError(f"Request failed: {str(e)}") + + # Handle HTTP error status codes + if response.status_code == 400: + error_data = self._parse_error_response(response) + raise BadRequestError( + error_data.get("error", "Bad request"), + details=error_data.get("details"), + ) + elif response.status_code == 404: + error_data = self._parse_error_response(response) + raise InferenceRequestNotFoundError( + error_data.get("error", "Not found"), details=error_data.get("details") + ) + elif response.status_code == 500: + error_data = self._parse_error_response(response) + raise InternalServerError( + error_data.get("error", "Internal server error"), + details=error_data.get("details"), + ) + elif not response.ok: + error_data = self._parse_error_response(response) + raise Earth2StudioAPIError( + error_data.get("error", f"HTTP {response.status_code} error"), + status_code=response.status_code, + details=error_data.get("details"), + ) + + # Return raw response if requested (for binary content like zip files) + if return_response: + return response + + # Otherwise parse as JSON (default behavior) + try: + return response.json() + except json.JSONDecodeError: + raise Earth2StudioAPIError("Invalid JSON response from server") + + def _parse_error_response(self, response: requests.Response) -> dict: + """ + Parse error response JSON, fallback to dict with error text. + + Parameters + ---------- + response : requests.Response + HTTP response from the API. + + Returns + ------- + dict + Parsed JSON body, or {"error": ...} if JSON decode fails. + """ + try: + return response.json() + except json.JSONDecodeError: + return {"error": response.text or f"HTTP {response.status_code} error"} + + def health_check(self) -> HealthStatus: + """ + Check if the API is running and healthy. + + Returns + ------- + HealthStatus + Object with status and timestamp. + + Raises + ------ + Earth2StudioAPIError + If the API is not accessible. + """ + response_data = self._make_request("GET", "/health") + return HealthStatus.from_dict(cast(dict[str, Any], response_data)) + + def submit_inference_request( + self, request: InferenceRequest + ) -> InferenceRequestResponse: + """ + Submit an inference request to be processed. + + Parameters + ---------- + request : InferenceRequest + InferenceRequest object with workflow configuration. + + Returns + ------- + InferenceRequestResponse + Response with execution ID and initial status. + + Raises + ------ + BadRequestError + If the request parameters are invalid. + Earth2StudioAPIError + For other API errors. + """ + response_data = self._make_request( + "POST", f"/v1/infer/{self.workflow_name}", json_data=request.to_dict() + ) + return InferenceRequestResponse.from_dict(cast(dict[str, Any], response_data)) + + def get_request_status(self, request_id: str) -> InferenceRequestStatus: + """ + Get the current status of an inference request. + + Parameters + ---------- + request_id : str + Unique identifier for the inference request. + + Returns + ------- + InferenceRequestStatus + Current progress and status. + + Raises + ------ + InferenceRequestNotFoundError + If the request ID is not found. + Earth2StudioAPIError + For other API errors. + """ + response_data = self._make_request( + "GET", f"/v1/infer/{self.workflow_name}/{request_id}/status" + ) + return InferenceRequestStatus.from_dict(cast(dict[str, Any], response_data)) + + def get_request_results( + self, + request_id: str, + timeout: float | None = None, + ) -> InferenceRequestResults: + """ + Get the results of a completed inference request by downloading the results. + + Parameters + ---------- + request_id : str + Unique identifier for the inference request. + timeout : float, optional + Timeout in seconds for the download request. If None, uses client default. + + Returns + ------- + InferenceRequestResults + Results with output file paths. Use result_paths() to get paths. + + Raises + ------ + InferenceRequestNotFoundError + If the request ID is not found. + Earth2StudioAPIError + For other API errors (including 202 if request is still processing). + + Notes + ----- + If the request is still processing, the API returns 202 and this method + raises Earth2StudioAPIError. Use get_request_status() to check completion first. + """ + # Use _make_request with return_response=True to get raw response for zip file + response = cast( + requests.Response, + self._make_request( + method="GET", + endpoint=f"/v1/infer/{self.workflow_name}/{request_id}/results", + return_response=True, + timeout=timeout, + ), + ) + + # Handle 202 status specially (request still processing) + if response.status_code == 202: + try: + error_data = response.json() + raise Earth2StudioAPIError( + error_data.get("message", "Request is still processing"), + status_code=202, + details=error_data.get("status"), + ) + except json.JSONDecodeError: + raise Earth2StudioAPIError( + "Request is still processing", status_code=202 + ) + + response_data = response.json() + return InferenceRequestResults.from_dict(response_data) + + def wait_for_completion( + self, + request_id: str, + poll_interval: float = 5.0, + timeout: float | None = None, + ) -> InferenceRequestResults: + """ + Wait for an inference request to complete and return results. + + Parameters + ---------- + request_id : str + Unique identifier for the inference request. + poll_interval : float, optional + How often to check status in seconds. Default is 5.0. + timeout : float, optional + Maximum time to wait in seconds. None for no timeout. + + Returns + ------- + InferenceRequestResults + Results when the request completes successfully. + + Raises + ------ + RequestTimeoutError + If timeout is reached. + Earth2StudioAPIError + If the request fails or other API errors occur. + """ + start_time = time.time() + + while True: + status = self.get_request_status(request_id) + + if status.status == RequestStatus.COMPLETED: + return self.get_request_results(request_id, timeout) + elif status.status == RequestStatus.FAILED: + raise Earth2StudioAPIError( + f"Inference request {request_id} failed: {status.error_message}" + ) + elif status.status == RequestStatus.CANCELLED: + raise Earth2StudioAPIError("Inference request was cancelled") + + # Check timeout (timeout=0.0 means fail immediately if not complete) + if timeout is not None and (time.time() - start_time) > timeout: + raise RequestTimeoutError( + f"Request {request_id} did not complete within {timeout} seconds" + ) + + time.sleep(poll_interval) + + def run_inference_sync( + self, + request: InferenceRequest, + poll_interval: float = 5.0, + timeout: float | None = None, + ) -> InferenceRequestResults: + """ + Submit an inference request and wait for it to complete. + + Convenience method that combines submit_inference_request() and + wait_for_completion(). + + Parameters + ---------- + request : InferenceRequest + InferenceRequest object with workflow configuration. + poll_interval : float, optional + How often to check status in seconds. Default is 5.0. + timeout : float, optional + Maximum time to wait in seconds. None for no timeout. + + Returns + ------- + InferenceRequestResults + Results when the request completes successfully. + """ + response = self.submit_inference_request(request) + return self.wait_for_completion(response.execution_id, poll_interval, timeout) + + def result_root_path(self, result: InferenceRequestResults) -> str: + """ + Get the root URL path for accessing result files. + + Parameters + ---------- + result : InferenceRequestResults + Result object returned by the request. + + Returns + ------- + str + Root path URL for result files (e.g. "/v1/infer/workflow_name/exec_123/results/"). + """ + return f"/v1/infer/{self.workflow_name}/{result.request_id}/results/" + + def download_result( + self, + result: InferenceRequestResults, + path: str, + timeout: float | None = None, + ) -> io.BytesIO: + """ + Download a result file from the server or S3. + + Parameters + ---------- + result : InferenceRequestResults + Result object containing request metadata. + path : str + Relative path to the result file (as returned in result_paths). + timeout : float, optional + Timeout in seconds for the download. If None, uses client default. + + Returns + ------- + io.BytesIO + In-memory buffer containing the downloaded file content. + + Raises + ------ + Earth2StudioAPIError + If the download fails or other API errors occur. + """ + if result.storage_type == StorageType.S3: + if not result.signed_url: + raise Earth2StudioAPIError("S3 storage type requires a signed URL") + + from earth2studio.serve.client.fsspec_utils import ( + create_cloudfront_mapper, + ) + + mapper = create_cloudfront_mapper(result.signed_url, zarr_path="") + # strip out the prefix execution_id from the path + parts = path.split("/") + if len(parts) < 2: + raise Earth2StudioAPIError( + f"Expected S3 result path to include an execution-id prefix, got: {path!r}" + ) + path = "/".join(parts[1:]) + content = mapper.fs.cat_file(path) + return io.BytesIO(content) + + # Default: download from server + response = cast( + requests.Response, + self._make_request( + method="GET", + endpoint=f"{self.result_root_path(result)}{path}", + return_response=True, + stream=True, + timeout=timeout, + ), + ) + # TODO: add support for downloading to tmp file to avoid OOM + return io.BytesIO(response.content) + + def close(self) -> None: + """ + Close the underlying HTTP session. + """ + self.session.close() # type: ignore[no-untyped-call] + + def __enter__(self) -> "Earth2StudioClient": + """ + Context manager entry. + + Returns + ------- + Earth2StudioClient + self. + """ + return self + + def __exit__( + self, + exc_type: type[BaseException] | None, + exc_val: BaseException | None, + exc_tb: object, + ) -> None: + """ + Context manager exit. Closes the HTTP session. + """ + self.close() diff --git a/earth2studio/serve/client/e2client.py b/earth2studio/serve/client/e2client.py new file mode 100644 index 000000000..59a17aebf --- /dev/null +++ b/earth2studio/serve/client/e2client.py @@ -0,0 +1,479 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + + +from collections import OrderedDict +from collections.abc import Iterator +from typing import Any, Literal +from urllib.parse import urljoin + +import numpy as np +import torch + +try: + import aiohttp +except ImportError: + aiohttp = None # type: ignore[assignment] +import xarray as xr + +from earth2studio.data import ( # type: ignore[import-untyped] + InferenceOutputSource, + fetch_data, +) +from earth2studio.models.auto import AutoModelMixin # type: ignore[import-untyped] +from earth2studio.models.px.utils import PrognosticMixin # type: ignore[import-untyped] +from earth2studio.serve.client import fsspec_utils +from earth2studio.serve.client.client import Earth2StudioClient +from earth2studio.serve.client.exceptions import Earth2StudioAPIError +from earth2studio.serve.client.models import ( + InferenceRequest, + InferenceRequestResults, + StorageType, +) +from earth2studio.utils.type import CoordSystem # type: ignore[import-untyped] + + +class RemoteEarth2Workflow: + """ + Remote inference workflow client for Earth2Studio API. + + Provides Earth2Studio-compatible interface for running inference on a remote + Earth2Studio API server. Supports both direct calls and iterator-based access. + + Parameters + ---------- + base_url : str + URL of the Earth2Studio API server. + workflow_name : str + Name of the workflow to execute on the server. + device : str or torch.device, optional + Device for tensor operations (e.g. "cuda", "cpu"). Default from CUDA availability. + xr_args : dict, optional + Additional arguments passed to xarray.open_dataset / xarray.open_zarr. + **client_kwargs : Any + Additional arguments passed to Earth2StudioClient (e.g. token for authentication). + """ + + def __init__( + self, + base_url: str, + workflow_name: str, + device: str | torch.device | None = None, + xr_args: dict[str, Any] | None = None, + **client_kwargs: Any, + ) -> None: + self.base_url = base_url + self.client = Earth2StudioClient( + base_url=base_url, workflow_name=workflow_name, **client_kwargs + ) + self.workflow_name = workflow_name + if device is None: + device = "cuda" if torch.cuda.is_available() else "cpu" + self.device = device + self.xr_args = xr_args.copy() if xr_args else {} + + def __call__(self, **kwargs: Any) -> "RemoteEarth2WorkflowResult": + """ + Execute inference request and return result object for accessing outputs. + + Parameters + ---------- + **kwargs : Any + Workflow parameters for the inference request. + + Returns + ------- + RemoteEarth2WorkflowResult + Result object for accessing inference outputs. + """ + request = InferenceRequest(parameters=kwargs.copy()) + response = self.client.submit_inference_request(request) + return RemoteEarth2WorkflowResult(self, response.execution_id) + + def to(self, device: torch.device | str) -> "RemoteEarth2Workflow": + """ + Move workflow to specified device. + + Parameters + ---------- + device : torch.device or str + Target device ("cuda", "cpu", or torch.device). + + Returns + ------- + RemoteEarth2Workflow + self for method chaining. + """ + self.device = device + return self + + +class RemoteEarth2WorkflowResult: + """ + Result object for a remote inference request. + + Provides methods to access inference results as datasets, data sources, or iterators. + The result is fetched lazily; methods wait for completion if needed. + + Parameters + ---------- + workflow : RemoteEarth2Workflow + Parent RemoteEarth2Workflow instance. + execution_id : str + Unique identifier for the inference execution. + """ + + def __init__(self, workflow: RemoteEarth2Workflow, execution_id: str) -> None: + """ + Store the parent workflow and execution id; result is fetched lazily. + + Parameters + ---------- + workflow : RemoteEarth2Workflow + Parent workflow instance. + execution_id : str + Unique identifier for the inference execution. + """ + self.workflow = workflow + self.execution_id = execution_id + self._result: InferenceRequestResults | None = None + + def _get_result(self) -> InferenceRequestResults: + """ + Return cached result or wait for completion and cache it. + + Returns + ------- + InferenceRequestResults + Cached or newly fetched inference results. + """ + if self._result is None: + self._result = self.workflow.client.wait_for_completion(self.execution_id) + return self._result + + def as_dataset(self) -> xr.Dataset: + """ + Wait for inference to complete and return output dataset. + + Returns + ------- + xr.Dataset + Xarray Dataset containing the inference result data. + + Raises + ------ + Earth2StudioAPIError + If the request did not return any outputs. + ValueError + If the result file format is not .zarr or .nc. + """ + request_result = self._get_result() + result_paths = request_result.result_paths() + if not result_paths: + raise Earth2StudioAPIError("The request did not return any outputs.") + result_path = result_paths[0] + + if result_path.endswith(".zarr"): + if request_result.storage_type == StorageType.S3: + # Extract zarr path without execution_id prefix (first path component) + zarr_path = "/".join(result_path.split("/")[1:]) + mapper = fsspec_utils.get_mapper(request_result, zarr_path) + ds = xr.open_zarr(mapper, consolidated=True, **self.workflow.xr_args) + elif request_result.storage_type == StorageType.SERVER: + result_url = urljoin( + self.workflow.base_url + "/", + ( + self.workflow.client.result_root_path(request_result) + + result_path + ).lstrip("/"), + ) + # Pass auth token and longer timeout for HTTP requests to zarr store + xr_kwargs = dict(self.workflow.xr_args) + storage_options = dict(xr_kwargs.pop("storage_options", {})) + if self.workflow.client.token: + headers = dict(storage_options.get("headers", {})) + headers["Authorization"] = f"Bearer {self.workflow.client.token}" + storage_options["headers"] = headers + # Use at least 300s timeout for zarr reads (fsspec/aiohttp) + zarr_timeout = max(300.0, self.workflow.client.timeout) + client_kwargs = dict(storage_options.get("client_kwargs", {})) + if aiohttp is not None and "timeout" not in client_kwargs: + client_kwargs["timeout"] = aiohttp.ClientTimeout(total=zarr_timeout) + storage_options["client_kwargs"] = client_kwargs + ds = xr.open_zarr( + result_url, + consolidated=True, + storage_options=storage_options or None, + **xr_kwargs, + ) + else: + raise ValueError( + f"Unsupported storage type: {request_result.storage_type}" + ) + elif result_path.endswith(".nc"): + # TODO: support OpenDAP in the future for remote NetCDF4 access? + result_data = self.workflow.client.download_result( + request_result, result_path + ) + ds = xr.open_dataset(result_data, engine="netcdf4", **self.workflow.xr_args) + else: + raise ValueError( + f"Unsupported result file format: {result_path!r}. " + "Only .zarr and .nc are supported for as_dataset()." + ) + + return ds + + def as_data_source(self) -> InferenceOutputSource: + """ + Wait for inference to complete and return as DataSource. + + Returns + ------- + DataSource + Data source wrapper for the inference results. + """ + ds = self.as_dataset() + return InferenceOutputSource(ds) + + def as_model( + self, iter_coord: Literal["time", "lead_time"] = "lead_time" + ) -> "InferenceOutputModel": + """ + Create model wrapper over inference results for iteration by time step. + + Parameters + ---------- + iter_coord : {"time", "lead_time"}, optional + Coordinate to iterate over. Default is "lead_time". + + Returns + ------- + InferenceOutputModel + Model that yields (tensor, coordinate_system) per time step. + """ + data_source = self.as_data_source() + return InferenceOutputModel( + data_source=data_source, iter_coord=iter_coord, device=self.workflow.device + ) + + +def _convert_time_to_lead_time( + x: torch.Tensor, coords: CoordSystem, start_time: np.datetime64 +) -> tuple[torch.Tensor, CoordSystem]: + """ + Convert time coordinate to lead_time coordinate. + + Transforms absolute time coordinates to lead times relative to start_time, + adding a time dimension with the start time. + + Parameters + ---------- + x : torch.Tensor + Input tensor. + coords : CoordSystem + Coordinate system containing time coordinates. + start_time : np.datetime64 + Reference start time for lead time calculation. + + Returns + ------- + tuple[torch.Tensor, CoordSystem] + Transformed tensor and updated coordinate system. + """ + coords = coords.copy() + time = coords["time"] + dims = list(coords.keys()) + time_dim = dims.index("time") + if "lead_time" not in dims: + raise ValueError( + "Cannot convert to lead_time: 'lead_time' coordinate not found in " + f"fetch_data output. Available coords: {dims}" + ) + lead_time_dim = dims.index("lead_time") + lead_time = time - start_time + coords["time"] = np.array([start_time]) + coords["lead_time"] = lead_time + x = x.transpose(time_dim, lead_time_dim) + return (x, coords) + + +class InferenceOutputModel(AutoModelMixin, PrognosticMixin): + """ + Prognostic model wrapper for inference output data sources. + + Wraps an InferenceOutputSource to provide a prognostic model interface that + can be used in Earth2Studio workflows. Pre-computed inference results are + consumed as if generated by a live model. + + Parameters + ---------- + data_source : InferenceOutputSource + Pre-computed inference data source. + iter_coord : {"time", "lead_time"}, optional + Coordinate to iterate over. Default is "lead_time". + variables : list[str], optional + Variable names to include. If None, uses all from the data source. + device : torch.device or str, optional + Device for tensor operations (e.g. "cuda", "cpu"). Default is "cpu". + """ + + def __init__( + self, + data_source: InferenceOutputSource, + iter_coord: Literal["time", "lead_time"] = "lead_time", + variables: list[str] | None = None, + device: torch.device | str = "cpu", + ): + self.data_source = data_source + self.iter_coord = iter_coord + if variables is None: + variables = self.data_source.da.coords["variable"] + self.variables = np.array(variables) + self.device = device + + def input_coords(self) -> CoordSystem: + """ + Return empty input coordinate system. + + This model reads from a pre-computed data source and requires no input + coordinates. + + Returns + ------- + CoordSystem + Empty ordered dictionary of coordinates. + """ + return OrderedDict( + { + "batch": np.empty(0), + "time": np.empty(0), + "lead_time": np.array([np.timedelta64(0, "h")]), + "variable": np.array([]), + "lat": np.empty(0), + "lon": np.empty(0), + } + ) + + def output_coords(self, input_coords: CoordSystem) -> CoordSystem: + """ + Generate output coordinate system based on data source coordinates. + + Constructs the coordinate system for output tensors. Time step is inferred + from the first two time coordinates if available, otherwise defaults to 6 hours. + + Parameters + ---------- + input_coords : CoordSystem + Input coordinate system (unused; kept for interface compatibility). + + Returns + ------- + CoordSystem + Coordinate system with batch, time, lead_time, variable, lat, lon. + """ + time_coord = self.data_source.da.coords["time"][:2].values + if len(time_coord) >= 2: + time_step = time_coord[1] - time_coord[0] + else: + # use a placeholder if we only have one time step of data + time_step = np.timedelta64(6, "h") + output_coords = OrderedDict( + { + "batch": np.empty(0), + "time": np.empty(0), + "lead_time": np.array([time_step]), + "variable": self.variables, + "lat": self.data_source.da.coords["lat"].values, + "lon": self.data_source.da.coords["lon"].values, + } + ) + return output_coords + + def to(self, device: torch.device | str) -> "InferenceOutputModel": + """ + Move model to specified device. + + Parameters + ---------- + device : torch.device or str + Target device ("cuda", "cpu", or torch.device). + + Returns + ------- + InferenceOutputModel + self for method chaining. + """ + self.device = device + return self + + def __call__( + self, x: torch.Tensor | None = None, coords: CoordSystem | None = None + ) -> tuple[torch.Tensor, CoordSystem]: + """ + Execute single time-step from the data source. + + Returns the first available time step. Input parameters are ignored; + data is read from the pre-computed data source. + + Parameters + ---------- + x : torch.Tensor, optional + Input tensor (unused; kept for interface compatibility). + coords : CoordSystem, optional + Input coordinate system (unused; kept for interface compatibility). + + Returns + ------- + tuple[torch.Tensor, CoordSystem] + Output tensor and coordinate system for the first time step. + """ + return next(self.create_iterator(x, coords)) + + def create_iterator( + self, x: torch.Tensor | None = None, coords: CoordSystem | None = None + ) -> Iterator[tuple[torch.Tensor, CoordSystem]]: + """ + Create iterator over time steps from the data source. + + Iterates through all available time steps, optionally converting time + coordinates to lead_time relative to the first time step. + + Parameters + ---------- + x : torch.Tensor, optional + Input tensor (unused; kept for interface compatibility). + coords : CoordSystem, optional + Input coordinate system (unused; kept for interface compatibility). + + Yields + ------ + tuple[torch.Tensor, CoordSystem] + (tensor, coordinate_system) for each time step in the data source. + """ + times = self.data_source.da.coords["time"].values + start_time = times[0] + for time in times: + (x, coords) = fetch_data( + self.data_source, + time=np.array([time]), + variable=self.variables, + device=self.device, + ) + if self.iter_coord == "lead_time": + (x, coords) = _convert_time_to_lead_time(x, coords, start_time) + + yield (x, coords) diff --git a/earth2studio/serve/client/exceptions.py b/earth2studio/serve/client/exceptions.py new file mode 100644 index 000000000..f3c2de5c4 --- /dev/null +++ b/earth2studio/serve/client/exceptions.py @@ -0,0 +1,137 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + + +class Earth2StudioAPIError(Exception): + """Base exception for Earth2Studio API errors. + + Parameters + ---------- + message : str + Human-readable error message. + status_code : int, optional + HTTP status code if the error came from an API response. + details : str, optional + Additional error details. + """ + + def __init__( + self, + message: str, + status_code: int | None = None, + details: str | None = None, + ): + super().__init__(message) + self.message = message + self.status_code = status_code + self.details = details + + def __str__(self) -> str: + """ + Return a human-readable error string. + + Returns + ------- + str + Error string including message, status code (if set), and details (if set). + """ + error_msg = f"Earth2Studio API Error: {self.message}" + if self.status_code: + error_msg += f" (HTTP {self.status_code})" + if self.details: + error_msg += f" - {self.details}" + return error_msg + + +class BadRequestError(Earth2StudioAPIError): + """Exception raised for HTTP 400 Bad Request errors.""" + + def __init__(self, message: str, details: str | None = None): + """ + Initialize the exception. + + Parameters + ---------- + message : str + Human-readable error message. + details : str, optional + Additional error details. + """ + super().__init__(message, status_code=400, details=details) + + +class InferenceRequestNotFoundError(Earth2StudioAPIError): + """Exception raised for HTTP 404 Not Found errors when inference request is not found.""" + + def __init__(self, message: str, details: str | None = None): + """ + Initialize the exception. + + Parameters + ---------- + message : str + Human-readable error message. + details : str, optional + Additional error details. + """ + super().__init__(message, status_code=404, details=details) + + +class InternalServerError(Earth2StudioAPIError): + """Exception raised for HTTP 500 Internal Server errors.""" + + def __init__(self, message: str, details: str | None = None): + """ + Initialize the exception. + + Parameters + ---------- + message : str + Human-readable error message. + details : str, optional + Additional error details. + """ + super().__init__(message, status_code=500, details=details) + + +class RequestTimeoutError(Earth2StudioAPIError): + """Exception raised when a request times out.""" + + def __init__(self, message: str = "Request timed out"): + """ + Initialize the exception. + + Parameters + ---------- + message : str, optional + Human-readable error message. Default is "Request timed out". + """ + super().__init__(message) + + +class APIConnectionError(Earth2StudioAPIError): + """Exception raised when connection to the API fails.""" + + def __init__(self, message: str = "Failed to connect to Earth2Studio API"): + """ + Initialize the exception. + + Parameters + ---------- + message : str, optional + Human-readable error message. Default is "Failed to connect to Earth2Studio API". + """ + super().__init__(message) diff --git a/earth2studio/serve/client/fsspec_utils.py b/earth2studio/serve/client/fsspec_utils.py new file mode 100644 index 000000000..c121e7108 --- /dev/null +++ b/earth2studio/serve/client/fsspec_utils.py @@ -0,0 +1,302 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + + +from typing import Any, NoReturn +from urllib.parse import parse_qs, urlencode, urlparse + +import fsspec # type: ignore[import-untyped] + +from earth2studio.serve.client.models import InferenceRequestResults, StorageType + + +class SignedURLFileSystem(fsspec.AbstractFileSystem): + """ + FSSpec filesystem that appends signed params to requests. + + Wraps a base HTTP filesystem and URL; converts 403 responses to + FileNotFoundError for compatibility with consumers like Zarr. + """ + + def __init__( + self, base_fs: Any, query_params: dict[str, str], base_url: str + ) -> None: + """ + Wrap a base filesystem and URL with query params for signed requests. + + Parameters + ---------- + base_fs : Any + Base fsspec filesystem (e.g. HTTP). + query_params : dict[str, str] + Query parameters to append (e.g. Policy, Signature, Key-Pair-Id). + base_url : str + Base URL for the store. + """ + super().__init__() + self._fs = base_fs + self._query_params = query_params + self._base_url = base_url + self._query_string = urlencode(query_params, safe="~") + + def _make_signed_path(self, path: str) -> str: + """ + Return the path with signed query parameters appended. + + Parameters + ---------- + path : str + Relative or absolute path/URL. + + Returns + ------- + str + Full URL with signed query string. + """ + if path.startswith("http"): + full_url = path + else: + clean_path = path.lstrip("/") + full_url = ( + f"{self._base_url}/{clean_path}" if clean_path else self._base_url + ) + separator = "&" if "?" in full_url else "?" + return f"{full_url}{separator}{self._query_string}" + + def _handle_403(self, e: BaseException, path: str) -> "NoReturn": + """ + Convert 403 errors to FileNotFoundError; re-raise others. + + Parameters + ---------- + e : BaseException + Caught exception. + path : str + Path that was accessed (for error message). + """ + error_str = str(e).lower() + if "403" in str(e) or "forbidden" in error_str: + raise FileNotFoundError(f"File not found: {path}") from None + raise e + + def _open(self, path: str, mode: str = "rb", **kwargs: Any) -> Any: + """ + Open a path with signed URL; 403 is converted to FileNotFoundError. + + Parameters + ---------- + path : str + Path or URL to open. + mode : str, optional + Open mode (e.g. "rb"). Default is "rb". + **kwargs : Any + Passed to the underlying filesystem. + + Returns + ------- + Any + File-like object from the base filesystem. + + Raises + ------ + FileNotFoundError + If the server returns 403 (forbidden). + """ + try: + return self._fs._open(self._make_signed_path(path), mode=mode, **kwargs) + except Exception as e: + self._handle_403(e, path) + + def cat_file( + self, path: str, start: int | None = None, end: int | None = None, **kwargs: Any + ) -> Any: + """ + Read file contents with signed URL; 403 is converted to FileNotFoundError. + + Parameters + ---------- + path : str + Path or URL to read. + start : int, optional + Start byte offset. + end : int, optional + End byte offset. + **kwargs : Any + Passed to the underlying filesystem. + + Returns + ------- + Any + File contents (typically bytes). + + Raises + ------ + FileNotFoundError + If the server returns 403. + """ + try: + return self._fs.cat_file( + self._make_signed_path(path), start=start, end=end, **kwargs + ) + except Exception as e: + self._handle_403(e, path) + + def _cat_file( + self, path: str, start: int | None = None, end: int | None = None, **kwargs: Any + ) -> Any: + """ + Async cat_file used by Zarr; delegates to cat_file. + + Parameters + ---------- + path : str + Path or URL to read. + start : int, optional + Start byte offset. + end : int, optional + End byte offset. + **kwargs : Any + Passed to cat_file. + + Returns + ------- + Any + File contents. + """ + return self.cat_file(path, start=start, end=end, **kwargs) + + def info(self, path: str, **kwargs: Any) -> Any: + """ + Return metadata for path with signed URL; 403 becomes FileNotFoundError. + + Parameters + ---------- + path : str + Path or URL. + **kwargs : Any + Passed to the underlying filesystem. + + Returns + ------- + Any + Metadata dict for the path. + + Raises + ------ + FileNotFoundError + If the server returns 403. + """ + try: + return self._fs.info(self._make_signed_path(path), **kwargs) + except Exception as e: + self._handle_403(e, path) + + def exists(self, path: str, **kwargs: Any) -> bool: + """ + Return True if path exists; 403 is treated as not found. + + Parameters + ---------- + path : str + Path or URL to check. + **kwargs : Any + Passed to the underlying filesystem. + + Returns + ------- + bool + True if path exists, False if not found or 403. + """ + try: + return self._fs.exists(self._make_signed_path(path), **kwargs) + except Exception as e: + try: + self._handle_403(e, path) + except FileNotFoundError: + return False + + +def create_cloudfront_mapper(signed_url: str, zarr_path: str = "") -> Any: + """ + Create an fsspec mapper for a CloudFront signed Zarr URL. + + Parameters + ---------- + signed_url : str + CloudFront signed URL with Policy, Signature, and Key-Pair-Id query params. + zarr_path : str, optional + Subpath within the signed URL to the Zarr store. Default is "". + + Returns + ------- + fsspec.mapping.FSMap + Mapper suitable for use with xarray.open_zarr(). + """ + # Parse the URL + parsed = urlparse(signed_url) + + # Extract query parameters + query_params = {k: v[0] for k, v in parse_qs(parsed.query).items()} + + # Get base path (remove trailing /* if present) + base_path = parsed.path.rstrip("/*").rstrip("*") + + # Reconstruct base URL + if zarr_path != "": + base_url = f"{parsed.scheme}://{parsed.netloc}{base_path}/{zarr_path}" + else: + base_url = f"{parsed.scheme}://{parsed.netloc}{base_path}" + + # Create HTTP filesystem + fs = fsspec.filesystem("https") + + signed_fs = SignedURLFileSystem(fs, query_params, base_url) + mapper = fsspec.mapping.FSMap(root="", fs=signed_fs, check=False, create=False) + + return mapper + + +def get_mapper( + request_result: InferenceRequestResults, zarr_path: str = "" +) -> Any | None: + """ + Return an fsspec mapper for the result, or None for SERVER storage. + + Parameters + ---------- + request_result : InferenceRequestResults + Inference result containing storage type and optional signed_url. + zarr_path : str, optional + Subpath to the Zarr store within the result. Default is "". + + Returns + ------- + fsspec.mapping.FSMap or None + Mapper for S3/signed URL storage, or None for SERVER storage. + + Raises + ------ + ValueError + If storage type is S3 but signed_url is missing, or storage type is unsupported. + """ + if request_result.storage_type == StorageType.S3: + if request_result.signed_url is None: + raise ValueError("S3 storage type requires a signed URL") + return create_cloudfront_mapper(request_result.signed_url, zarr_path) + elif request_result.storage_type == StorageType.SERVER: + return None + else: + raise ValueError(f"Unsupported storage type: {request_result.storage_type}") diff --git a/earth2studio/serve/client/models.py b/earth2studio/serve/client/models.py new file mode 100644 index 000000000..60e3f9234 --- /dev/null +++ b/earth2studio/serve/client/models.py @@ -0,0 +1,314 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + + +import json +from dataclasses import dataclass +from datetime import date, datetime, timedelta +from enum import Enum +from typing import Any + +import numpy as np + + +class StorageType(str, Enum): + """Storage type for inference results.""" + + SERVER = "server" + S3 = "s3" + + +class RequestStatus(Enum): + """Status values for inference requests.""" + + # Initial statuses + ACCEPTED = "accepted" + QUEUED = "queued" + + # Processing statuses + RUNNING = "running" + + # Final statuses + COMPLETED = "completed" + FAILED = "failed" + CANCELLED = "cancelled" + PENDING_RESULTS = "pending_results" + + +@dataclass +class InferenceRequest: + """Main inference request payload.""" + + parameters: dict[str, Any] | None = None + + def to_dict(self) -> dict[str, Any]: + """ + Convert to dictionary for JSON serialization. + + Returns + ------- + dict[str, Any] + Dictionary suitable for JSON request body (e.g. {"parameters": ...}). + """ + # use custom JSON encoder first to convert objects that are normally not serializable + parameters = json.loads( + json.dumps(self.parameters, default=InferenceRequest.json_serial) + ) + return {"parameters": parameters} + + @staticmethod + def json_serial(obj: Any) -> Any: + """ + JSON serializer for objects not serializable by default json code. + + Parameters + ---------- + obj : Any + Object to serialize (numpy array, datetime, timedelta, etc.). + + Returns + ------- + Any + JSON-serializable representation of the object. + """ + if isinstance(obj, np.ndarray): + return list(obj) + elif isinstance(obj, (datetime, date)): + return obj.isoformat() + elif isinstance(obj, timedelta): + return obj.total_seconds() + elif isinstance(obj, np.integer): + return int(obj) + elif isinstance(obj, np.floating): + return float(obj) + elif isinstance(obj, np.datetime64): + return str(obj) + elif isinstance(obj, np.timedelta64): + return obj / np.timedelta64(1, "s") # seconds as float + else: + raise TypeError( + f"Object of type {type(obj).__name__} is not JSON serializable" + ) + + +@dataclass +class InferenceRequestResponse: + """Response when submitting an inference request.""" + + execution_id: str + status: RequestStatus + message: str + timestamp: datetime + + @classmethod + def from_dict(cls, data: dict[str, Any]) -> "InferenceRequestResponse": + """ + Build an InferenceRequestResponse from an API response dict. + + Parameters + ---------- + data : dict[str, Any] + API response dictionary containing execution_id, status, message, timestamp. + + Returns + ------- + InferenceRequestResponse + Constructed response instance. + """ + return cls( + execution_id=data["execution_id"], + status=RequestStatus(data["status"]), + message=data["message"], + timestamp=datetime.fromisoformat(data["timestamp"].replace("Z", "+00:00")), + ) + + +@dataclass +class ProgressInfo: + """Progress information for inference requests.""" + + progress: str + current_step: int + total_steps: int + + +@dataclass +class InferenceRequestStatus: + """Status information for an inference request.""" + + execution_id: str + status: RequestStatus + progress: ProgressInfo | None + error_message: str | None + + @classmethod + def from_dict(cls, data: dict[str, Any]) -> "InferenceRequestStatus": + """ + Build an InferenceRequestStatus from an API response dict. + + Parameters + ---------- + data : dict[str, Any] + API response dictionary containing execution_id, status, progress, error_message. + + Returns + ------- + InferenceRequestStatus + Constructed status instance. + """ + progress_data = data.get("progress") + progress = ( + ProgressInfo( + progress=progress_data["progress"], + current_step=progress_data["current_step"], + total_steps=progress_data["total_steps"], + ) + if progress_data is not None + else None + ) + + return cls( + execution_id=data["execution_id"], + status=RequestStatus(data["status"]), + progress=progress, + error_message=data.get("error_message"), + ) + + +@dataclass +class OutputFile: + """Information about an output file.""" + + path: str + size: int + + @classmethod + def from_dict(cls, data: dict[str, Any]) -> "OutputFile": + """ + Build an OutputFile from an API response dict. + + Parameters + ---------- + data : dict[str, Any] + API response dictionary containing path and size. + + Returns + ------- + OutputFile + Constructed output file instance. + """ + return cls(path=data["path"], size=data["size"]) + + +@dataclass +class InferenceRequestResults: + """Results of a completed inference request.""" + + request_id: str + status: RequestStatus + output_files: list[OutputFile] + completion_time: datetime | None + execution_time_seconds: float | None = None + storage_type: StorageType = StorageType.SERVER + signed_url: str | None = None + + @classmethod + def from_dict(cls, data: dict[str, Any]) -> "InferenceRequestResults": + """ + Build InferenceRequestResults from an API response dict. + + Parameters + ---------- + data : dict[str, Any] + API response dictionary containing request_id, status, output_files, + completion_time, and optional execution_time_seconds, storage_type, signed_url. + + Returns + ------- + InferenceRequestResults + Constructed results instance. + """ + output_files = [ + OutputFile.from_dict(file_data) for file_data in data["output_files"] + ] + completion_timestamp = data.get("completion_time") + completion_time = ( + datetime.fromisoformat(completion_timestamp.replace("Z", "+00:00")) + if completion_timestamp is not None + else None + ) + + return cls( + request_id=data["request_id"], + status=RequestStatus(data["status"]), + output_files=output_files, + completion_time=completion_time, + execution_time_seconds=data.get("execution_time_seconds"), + storage_type=StorageType( + data.get("storage_type", StorageType.SERVER.value) + ), + signed_url=data.get("signed_url"), + ) + + def result_paths(self) -> list[str]: + """ + Get paths to result data files found in the request response. + + Returns + ------- + list[str] + List of result paths (e.g. zarr roots or .nc files). Append to the + server results URL to download or open. + """ + # locate the root of zarr store + zarr_paths = { + f.path + for f in self.output_files + if (".zarr/" in f.path) or f.path.endswith(".zarr") + } + zarr_paths_sorted = sorted( + {path[: path.find(".zarr") + len(".zarr")] for path in zarr_paths} + ) + netcdf_paths = [f.path for f in self.output_files if f.path.endswith(".nc")] + return zarr_paths_sorted + netcdf_paths + + +@dataclass +class HealthStatus: + """Health status response.""" + + status: str + timestamp: datetime + + @classmethod + def from_dict(cls, data: dict[str, Any]) -> "HealthStatus": + """ + Build a HealthStatus from an API response dict. + + Parameters + ---------- + data : dict[str, Any] + API response dictionary containing status and timestamp. + + Returns + ------- + HealthStatus + Constructed health status instance. + """ + return cls( + status=data["status"], + timestamp=datetime.fromisoformat(data["timestamp"].replace("Z", "+00:00")), + ) diff --git a/serve/inferenceserver/api_server/workflow/__init__.py b/earth2studio/serve/server/__init__.py similarity index 62% rename from serve/inferenceserver/api_server/workflow/__init__.py rename to earth2studio/serve/server/__init__.py index 91d3cf418..475e291bf 100644 --- a/serve/inferenceserver/api_server/workflow/__init__.py +++ b/earth2studio/serve/server/__init__.py @@ -14,16 +14,9 @@ # See the License for the specific language governing permissions and # limitations under the License. -""" -Workflow package for custom workflows. - -This package provides the base classes and functionality for creating custom workflows -that can be served as REST APIs. -""" - from typing import Any -from .workflow import ( +from earth2studio.serve.server.workflow import ( Workflow, WorkflowParameters, WorkflowProgress, @@ -37,26 +30,9 @@ ) -# Lazy import for Earth2Workflow to avoid requiring torch/earth2studio dependencies -# unless actually needed def __getattr__(name: str) -> Any: if name == "Earth2Workflow": - from .e2workflow import Earth2Workflow + from earth2studio.serve.server import e2workflow - return Earth2Workflow + return e2workflow.Earth2Workflow raise AttributeError(f"module {__name__!r} has no attribute {name!r}") - - -__all__ = [ - "Workflow", - "WorkflowParameters", - "WorkflowProgress", - "WorkflowResult", - "WorkflowStatus", - "WorkflowRegistry", - "workflow_registry", - "get_workflow_config", - "register_all_workflows", - "parse_workflow_directories_from_env", - "Earth2Workflow", -] diff --git a/serve/inferenceserver/api_server/cleanup_daemon.py b/earth2studio/serve/server/cleanup_daemon.py similarity index 82% rename from serve/inferenceserver/api_server/cleanup_daemon.py rename to earth2studio/serve/server/cleanup_daemon.py index 689f88d2f..4a0b29498 100644 --- a/serve/inferenceserver/api_server/cleanup_daemon.py +++ b/earth2studio/serve/server/cleanup_daemon.py @@ -14,13 +14,6 @@ # See the License for the specific language governing permissions and # limitations under the License. -""" -Cleanup Daemon for API Server - -This daemon runs as a separate process and periodically cleans up expired -inference results based on the configured TTL (time-to-live). -""" - import json import logging import shutil @@ -34,36 +27,21 @@ import redis # type: ignore[import-untyped] -from api_server.config import get_config, get_config_manager -from api_server.workflow import WorkflowStatus +from earth2studio.serve.server.config import get_config, get_config_manager +from earth2studio.serve.server.workflow import WorkflowStatus -# Get configuration -config = get_config() +# Configure logging (config is obtained in main()) config_manager = get_config_manager() - -# Configure logging config_manager.setup_logging() logger = logging.getLogger(__name__) -# Path configuration from config -DEFAULT_OUTPUT_DIR = Path(config.paths.default_output_dir) -RESULTS_ZIP_DIR = Path(config.paths.results_zip_dir) - -# Global flag for graceful shutdown -shutdown_flag = False - - -def signal_handler(signum: int, frame: Any) -> None: - """Handle shutdown signals gracefully""" - global shutdown_flag - logger.info(f"Received signal {signum}, initiating graceful shutdown...") - shutdown_flag = True - def _delete_result_files( redis_client: redis.Redis, result_id: str, search_id: str, + default_output_dir: Path, + results_zip_dir: Path, workflow_name: str | None = None, ) -> None: """ @@ -73,19 +51,21 @@ def _delete_result_files( redis_client: Redis client result_id: ID to use for zip file lookup (request_id or combined_id) search_id: ID to search for in directory names + default_output_dir: Base directory for raw result outputs + results_zip_dir: Directory for result zip files and metadata workflow_name: Optional workflow name for workflow-specific subdirectory checking """ # Delete zip file zip_key = f"inference_request_zips:{result_id}:zip_file" zip_filename = redis_client.get(zip_key) if zip_filename: - zip_path = RESULTS_ZIP_DIR / zip_filename + zip_path = results_zip_dir / zip_filename if zip_path.exists(): zip_path.unlink() logger.info(f"Deleted zip file: {zip_path}") # Delete metadata file (metadata_{request_id}.json) - for item in RESULTS_ZIP_DIR.iterdir(): + for item in results_zip_dir.iterdir(): if ( item.is_file() and item.name.startswith("metadata") @@ -95,20 +75,20 @@ def _delete_result_files( logger.info(f"Deleted metadata file: {item}") # Delete raw results directory (search for directories containing search_id) - for item in DEFAULT_OUTPUT_DIR.iterdir(): + for item in default_output_dir.iterdir(): if item.is_dir() and search_id in item.name: shutil.rmtree(item) logger.info(f"Deleted raw results directory: {item}") # Also check subdirectories recursively for results - for item in RESULTS_ZIP_DIR.iterdir(): + for item in results_zip_dir.iterdir(): if item.is_dir() and search_id in item.name: shutil.rmtree(item) logger.info(f"Deleted results from zip dir: {item}") # Check in workflow-specific subdirectories if workflow_name is provided if workflow_name: - workflow_dir = DEFAULT_OUTPUT_DIR / workflow_name + workflow_dir = default_output_dir / workflow_name if workflow_dir.exists(): for item in workflow_dir.iterdir(): if item.is_dir() and search_id in item.name: @@ -121,6 +101,7 @@ def _process_expired_key( key: str, current_time: datetime, results_ttl_hours: float, + retention_ttl: int, expected_status: str, get_end_time_field: str, delete_files_func: Callable[[redis.Redis, str], None], @@ -134,6 +115,7 @@ def _process_expired_key( key: Redis key to process current_time: Current timestamp for age calculation results_ttl_hours: TTL threshold in hours + retention_ttl: Redis TTL in seconds for the key after marking expired expected_status: Expected status value for completed items get_end_time_field: Primary field name for end time delete_files_func: Function to call for deleting files @@ -180,7 +162,7 @@ def _process_expired_key( data["status"] = WorkflowStatus.EXPIRED redis_client.setex( key, - config.redis.retention_ttl, + retention_ttl, json.dumps(data), ) @@ -189,7 +171,13 @@ def _process_expired_key( return False -def cleanup_expired_results(redis_client: redis.Redis) -> None: +def cleanup_expired_results( + redis_client: redis.Redis, + results_ttl_hours: float, + retention_ttl: int, + default_output_dir: Path, + results_zip_dir: Path, +) -> None: """ Check Redis for expired results and clean them up. @@ -198,8 +186,6 @@ def cleanup_expired_results(redis_client: redis.Redis) -> None: 2. Deletes both raw result files and zip files 3. Updates the status to "expired" """ - results_ttl_hours = config.server.results_ttl_hours - logger.info("Running cleanup watchdog check...") current_time = datetime.now(timezone.utc) @@ -231,6 +217,8 @@ def delete_func( rc, result_id=_combined_id, search_id=_execution_id, + default_output_dir=default_output_dir, + results_zip_dir=results_zip_dir, workflow_name=_workflow_name, ) @@ -239,6 +227,7 @@ def delete_func( key=key, current_time=current_time, results_ttl_hours=results_ttl_hours, + retention_ttl=retention_ttl, expected_status=WorkflowStatus.COMPLETED, get_end_time_field="end_time", delete_files_func=delete_func, @@ -257,7 +246,16 @@ def delete_func( def main() -> None: """Main daemon loop""" - global shutdown_flag + config = get_config() + default_output_dir = Path(config.paths.default_output_dir) + results_zip_dir = Path(config.paths.results_zip_dir) + + state: dict[str, bool] = {"shutdown": False} + + def signal_handler(signum: int, frame: Any) -> None: + """Handle shutdown signals gracefully.""" + logger.info(f"Received signal {signum}, initiating graceful shutdown...") + state["shutdown"] = True # Set up signal handlers signal.signal(signal.SIGINT, signal_handler) @@ -287,15 +285,21 @@ def main() -> None: # Main daemon loop try: - while not shutdown_flag: + while not state["shutdown"]: try: - cleanup_expired_results(redis_client) + cleanup_expired_results( + redis_client, + results_ttl_hours=config.server.results_ttl_hours, + retention_ttl=config.redis.retention_ttl, + default_output_dir=default_output_dir, + results_zip_dir=results_zip_dir, + ) except Exception as e: logger.exception(f"Error in cleanup cycle: {e}") # Sleep for the configured interval, checking shutdown flag periodically sleep_remaining = config.server.cleanup_watchdog_sec - while sleep_remaining > 0 and not shutdown_flag: + while sleep_remaining > 0 and not state["shutdown"]: sleep_time = min(5, sleep_remaining) # Check every 5 seconds time.sleep(sleep_time) sleep_remaining -= sleep_time diff --git a/serve/inferenceserver/api_server/config.py b/earth2studio/serve/server/config.py similarity index 95% rename from serve/inferenceserver/api_server/config.py rename to earth2studio/serve/server/config.py index fc1f86fee..69bc6a353 100644 --- a/serve/inferenceserver/api_server/config.py +++ b/earth2studio/serve/server/config.py @@ -14,14 +14,6 @@ # See the License for the specific language governing permissions and # limitations under the License. -""" -Configuration Management for Earth2Studio API Server - -This module provides centralized configuration management using Hydra. -All configuration values are defined here with sensible defaults and can be -overridden via YAML files or command-line arguments. -""" - import logging import os from dataclasses import dataclass, field @@ -206,8 +198,13 @@ def __init__(self) -> None: def _initialize_config(self) -> None: """Initialize configuration from Hydra""" try: - # Get config directory - config_dir = Path(__file__).parent / "conf" + # Prefer CONFIG_DIR env var (required when package is installed without repo layout) + config_dir_env = os.environ.get("CONFIG_DIR") + if config_dir_env: + config_dir = Path(config_dir_env) + else: + _repo_root = Path(__file__).resolve().parent.parent.parent.parent + config_dir = _repo_root / "serve" / "server" / "conf" # Clear any existing Hydra instance GlobalHydra.instance().clear() @@ -517,10 +514,6 @@ def workflow_config(self) -> dict[str, Any]: return self._workflow_config -# Global configuration instance -_config_manager: ConfigManager | None = None - - def get_config() -> AppConfig: """ Get the global configuration instance. @@ -529,7 +522,7 @@ def get_config() -> AppConfig: AppConfig: The application configuration Example: - >>> from api_server.config import get_config + >>> from earth2studio.serve.server.config import get_config >>> config = get_config() >>> print(config.redis.host) 'localhost' @@ -539,27 +532,23 @@ def get_config() -> AppConfig: def get_config_manager() -> ConfigManager: """ - Get the global configuration manager instance. + Get the configuration manager instance (singleton). Returns: ConfigManager: The configuration manager Example: - >>> from api_server.config import get_config_manager + >>> from earth2studio.serve.server.config import get_config_manager >>> manager = get_config_manager() >>> manager.setup_logging() """ - global _config_manager - if _config_manager is None: - _config_manager = ConfigManager() - return _config_manager + return ConfigManager() # Convenience function to reset config (mainly for testing) def reset_config() -> None: - """Reset the global configuration instance (mainly for testing)""" - global _config_manager - _config_manager = None + """Reset the configuration manager singleton (mainly for testing).""" + ConfigManager._instance = None GlobalHydra.instance().clear() @@ -571,7 +560,7 @@ def get_workflow_config(name: str) -> dict[str, Any]: dict[str, Any]: The workflow configuration Example: - >>> from api_server.config import get_workflow_config + >>> from earth2studio.serve.server.config import get_workflow_config >>> config = get_workflow_config("deterministic_earth2_workflow") >>> print(config["model_type"]) 'fcn' diff --git a/serve/inferenceserver/api_server/cpu_worker.py b/earth2studio/serve/server/cpu_worker.py similarity index 98% rename from serve/inferenceserver/api_server/cpu_worker.py rename to earth2studio/serve/server/cpu_worker.py index 99ac82099..78248ad6f 100644 --- a/serve/inferenceserver/api_server/cpu_worker.py +++ b/earth2studio/serve/server/cpu_worker.py @@ -29,6 +29,7 @@ "process_finalize_metadata", ] + import json import logging import zipfile @@ -40,8 +41,8 @@ import redis # type: ignore[import-untyped] # Import configuration -from api_server.config import get_config, get_config_manager -from api_server.utils import ( +from earth2studio.serve.server.config import get_config, get_config_manager +from earth2studio.serve.server.utils import ( get_inference_request_metadata_key, get_inference_request_output_path_key, get_inference_request_zip_key, @@ -49,7 +50,7 @@ get_signed_url_key, queue_next_stage, ) -from api_server.workflow import ( +from earth2studio.serve.server.workflow import ( WorkflowResult, WorkflowStatus, workflow_registry, @@ -76,7 +77,7 @@ # Register custom workflows in the CPU worker process try: - from api_server.workflow import register_all_workflows + from earth2studio.serve.server.workflow import register_all_workflows register_all_workflows(redis_client) logger.info("Custom workflows registered successfully in CPU worker process") @@ -327,14 +328,14 @@ def create_results_zip( file_manifest = build_file_manifest(output_path) if not output_path.exists(): - logger.warning(f"Output path {output_path} does not exist") + log.warning(f"Output path {output_path} does not exist") # Create zip file only if requested if create_zip: if zip_filename is None: zip_filename = f"{request_id}" zip_path = results_zip_dir / zip_filename - logger.info(f"Creating results zip file: {zip_path}") + log.info(f"Creating results zip file: {zip_path}") with zipfile.ZipFile( zip_path, "w", zipfile.ZIP_DEFLATED, compresslevel=6 @@ -368,9 +369,9 @@ def create_results_zip( FileManifestEntry(path=zip_filename, size=zip_size) ) - logger.info(f"Created zip file {zip_filename} ({zip_size} bytes)") + log.info(f"Created zip file {zip_filename} ({zip_size} bytes)") else: - logger.info( + log.info( f"Skipping zip creation for {request_id}, manifest has {len(file_manifest)} files" ) zip_filename = None # No zip file created @@ -413,7 +414,7 @@ def create_results_zip( config.redis.retention_ttl, str(results_zip_dir), ) - logger.info(f"Stored pending metadata in Redis for {request_id}") + log.info(f"Stored pending metadata in Redis for {request_id}") # Store zip filename association in Redis (only if zip was created) if zip_filename: @@ -559,7 +560,7 @@ def process_object_storage_upload( config.object_storage.bucket or config.object_storage.storage_type == "azure" ): - from api_server.object_storage import ( + from earth2studio.serve.server.object_storage import ( MSCObjectStorage, ObjectStorageError, ) @@ -573,7 +574,7 @@ def process_object_storage_upload( ) # Create S3 storage instance - storage_kwargs = { + storage_kwargs: dict[str, Any] = { "bucket": config.object_storage.bucket or config.object_storage.azure_container_name or "", @@ -1024,7 +1025,6 @@ def process_finalize_metadata( Returns: Dict containing result info, None on critical failure """ - from api_server.workflow import WorkflowStatus, workflow_registry request_id = f"{workflow_name}:{execution_id}" logger.info(f"Processing finalize metadata for {request_id}") @@ -1039,7 +1039,6 @@ def process_finalize_metadata( storage_info_json = redis_client.get(storage_info_key) if not pending_metadata_json or not results_zip_dir_str: - logger.error(f"Pending metadata not found in Redis for {request_id}") return fail_workflow( workflow_name, execution_id, diff --git a/serve/inferenceserver/api_server/workflow/e2workflow.py b/earth2studio/serve/server/e2workflow.py similarity index 97% rename from serve/inferenceserver/api_server/workflow/e2workflow.py rename to earth2studio/serve/server/e2workflow.py index 3e52df372..e71719de5 100644 --- a/serve/inferenceserver/api_server/workflow/e2workflow.py +++ b/earth2studio/serve/server/e2workflow.py @@ -24,12 +24,16 @@ import zarr from pydantic import Field, create_model -from api_server.config import get_config from earth2studio.io import IOBackend, NetCDF4Backend, ZarrBackend +from earth2studio.serve.server.config import get_config +from earth2studio.serve.server.workflow import ( + Workflow, + WorkflowConfig, + WorkflowParameters, + WorkflowProgress, +) from earth2studio.utils.type import CoordSystem -from .workflow import Workflow, WorkflowConfig, WorkflowParameters, WorkflowProgress - def _convert_param(param: inspect.Parameter, typeinfo: type) -> tuple[type, Field]: """Convert parameter to Pydantic Field declaration with validation constraints""" @@ -228,7 +232,7 @@ class BackendProgress: def __init__( self, io: IOBackend, - workflow: Workflow, + workflow: "Earth2Workflow", execution_id: str, progress_dim: str = "lead_time", ) -> None: diff --git a/serve/inferenceserver/api_server/main.py b/earth2studio/serve/server/main.py similarity index 83% rename from serve/inferenceserver/api_server/main.py rename to earth2studio/serve/server/main.py index 96905a618..3673c9c96 100644 --- a/serve/inferenceserver/api_server/main.py +++ b/earth2studio/serve/server/main.py @@ -15,15 +15,16 @@ # limitations under the License. """ -Earth2Studio REST API Server +Earth2Studio REST API server. -This module provides a REST API interface for running Earth2Studio workflows -including deterministic, diagnostic, ensemble, and custom inference workflows. +Provides FastAPI endpoints for workflow execution, status, and result retrieval, +with Redis and RQ for job queuing and Prometheus metrics. """ import asyncio import json import logging +import os import time import uuid from collections.abc import AsyncGenerator @@ -35,6 +36,7 @@ import aiofiles # type: ignore[import-untyped] import redis as redis_sync # type: ignore[import-untyped] # For RQ (synchronous) import redis.asyncio as redis # type: ignore[import-untyped] +import uvicorn from fastapi import FastAPI, HTTPException, Request from fastapi.middleware.cors import CORSMiddleware from fastapi.responses import Response, StreamingResponse @@ -43,8 +45,8 @@ from rq import Queue # Import configuration -from api_server.config import get_config, get_config_manager -from api_server.utils import ( +from earth2studio.serve.server.config import get_config, get_config_manager +from earth2studio.serve.server.utils import ( create_file_stream, get_inference_request_output_path_key, get_inference_request_zip_key, @@ -52,7 +54,7 @@ ) # Import workflow registry -from api_server.workflow import ( +from earth2studio.serve.server.workflow import ( WorkflowResult, WorkflowStatus, workflow_registry, @@ -80,13 +82,16 @@ def check_admission_control() -> None: """ Check if the inference request can be admitted based on queue sizes. - This function checks all relevant queues (inference, result zip, object storage, - and finalize metadata) to ensure none of them are at capacity before allowing + Checks all relevant queues (inference, result zip, object storage, + and finalize metadata) to ensure none are at capacity before allowing a new request to be enqueued. - Raises: - HTTPException: 429 status if any queue is full, indicating the service - is temporarily unavailable and the client should retry later. + Raises + ------ + HTTPException + 429 if any queue is full (service temporarily unavailable; retry later). + 503 if Redis is not initialized. + 500 if queue status cannot be determined. """ queue_names = [ config.queue.name, @@ -124,14 +129,18 @@ def get_queue_position(job_id: str) -> int | None: """ Get the position of a job in the queue. - Uses RQ's Queue.job_ids property which correctly returns the job IDs + Uses RQ's Queue.job_ids property, which correctly returns job IDs including custom job_id values set during enqueue. - Args: - job_id: The ID of the job to find + Parameters + ---------- + job_id : str + The ID of the job to find. - Returns: - Position in queue (0-indexed), or None if not found in queue + Returns + ------- + int or None + Position in queue (0-indexed), or None if not found (e.g. picked up by worker). """ if not inference_queue: logger.warning("Inference queue not available for position lookup") @@ -167,7 +176,12 @@ def get_queue_position(job_id: str) -> int | None: @asynccontextmanager async def lifespan(app: FastAPI) -> AsyncGenerator[None, None]: - """Lifespan event handler for application startup and shutdown""" + """ + Lifespan context manager for FastAPI application startup and shutdown. + + On startup: connects to Redis (async and sync), initializes the RQ inference + queue, and registers custom workflows. On shutdown: closes Redis connections. + """ # Startup global redis_client, redis_sync_client, inference_queue try: @@ -211,7 +225,7 @@ async def lifespan(app: FastAPI) -> AsyncGenerator[None, None]: # Register custom workflows try: - from api_server.workflow import register_all_workflows + from earth2studio.serve.server.workflow import register_all_workflows register_all_workflows(redis_sync_client) logger.info("Custom workflows registered successfully") @@ -265,10 +279,30 @@ async def lifespan(app: FastAPI) -> AsyncGenerator[None, None]: @app.get("/health") @app.get("/readiness") async def health_check() -> dict[str, str]: - """Health check endpoint using status script""" + """ + Health and readiness check endpoint. + + Runs the status script and returns overall health based on its exit code. + + Returns + ------- + dict + Keys ``status`` (e.g. "healthy"/"unhealthy") and ``timestamp`` (ISO format). + + Raises + ------ + HTTPException + 503 if status is unhealthy; 500 if the check fails. + """ try: # Run the status script and check exit code - script_path = Path(__file__).parent.parent / "scripts" / "status.sh" + # Prefer SCRIPT_DIR env var (required when package is installed without repo layout) + script_dir_env = os.environ.get("SCRIPT_DIR") + if script_dir_env: + script_path = Path(script_dir_env) / "status.sh" + else: + _repo_root = Path(__file__).resolve().parent.parent.parent.parent + script_path = _repo_root / "serve" / "server" / "scripts" / "status.sh" process = await asyncio.create_subprocess_exec( str(script_path), stdout=asyncio.subprocess.PIPE, @@ -302,13 +336,32 @@ async def health_check() -> dict[str, str]: # Azure ML uses this to see if the container is alive @app.get("/liveness") def liveness() -> dict[str, str]: - """Liveness probe for Azure ML; returns alive status to indicate container is running.""" + """ + Liveness probe for Azure ML. + + Returns + ------- + dict + ``status`` key set to "alive" to indicate the container is running. + """ return {"status": "alive"} @app.get("/metrics") async def get_metrics() -> Response: - """Get Prometheus metrics""" + """ + Expose Prometheus metrics. + + Returns + ------- + Response + Response with Prometheus text format and appropriate content type. + + Raises + ------ + HTTPException + 500 if metrics generation fails. + """ try: metrics_data = generate_latest() return Response(content=metrics_data, media_type=CONTENT_TYPE_LATEST) @@ -327,7 +380,14 @@ async def get_metrics() -> Response: @app.get("/v1/workflows") @app.get("/v1/infer/workflows") async def list_workflows() -> dict[str, dict[str, str]]: - """List all available workflows (only exposed workflows)""" + """ + List all available workflows. + + Returns + ------- + dict + Single key ``workflows`` mapping workflow name to description. + """ workflows = workflow_registry.list_workflows(exposed_only=True) return {"workflows": workflows} @@ -338,15 +398,24 @@ async def get_workflow_schema(workflow_name: str) -> dict[str, Any]: """ Get the OpenAPI JSON schema for a workflow's parameters. - For workflows derived from Workflow class, the schema is generated from - the WorkflowParameters class. For workflows derived from Earth2Workflow class, - the schema is auto-generated from the __call__ signature via AutoParameters. + For Workflow subclasses the schema comes from WorkflowParameters; for + Earth2Workflow subclasses it is generated from the __call__ signature via + AutoParameters. + + Parameters + ---------- + workflow_name : str + Name of the workflow. - Args: - workflow_name: Name of the workflow + Returns + ------- + dict + JSON schema for the workflow parameters (OpenAPI-compatible). - Returns: - JSON schema for the workflow parameters + Raises + ------ + HTTPException + 404 if workflow not found; 500 if schema generation fails. """ # Check if workflow exists and is exposed workflow_class = workflow_registry.get_workflow_class(workflow_name) @@ -386,7 +455,14 @@ async def get_workflow_schema(workflow_name: str) -> dict[str, Any]: class WorkflowExecutionRequest(BaseModel): - """Request model for workflow execution""" + """ + Request body for workflow execution. + + Attributes + ---------- + parameters : dict + Workflow-specific parameters (validated by the workflow's parameter class). + """ model_config = {"extra": "forbid"} @@ -396,7 +472,24 @@ class WorkflowExecutionRequest(BaseModel): class WorkflowExecutionResponse(BaseModel): - """Response model for workflow execution""" + """ + Response after submitting a workflow execution. + + Attributes + ---------- + workflow_name : str + Name of the workflow. + execution_id : str + Unique execution identifier. + status : str + Current status (e.g. QUEUED). + position : int or None + Queue position (0-indexed); set when status is QUEUED. + message : str + Human-readable message. + timestamp : str + ISO format timestamp. + """ workflow_name: str execution_id: str @@ -412,8 +505,31 @@ class WorkflowExecutionResponse(BaseModel): async def execute_workflow( workflow_name: str, request: WorkflowExecutionRequest ) -> WorkflowExecutionResponse: - """Execute a custom workflow""" - # Check if workflow exists and is exposed + """ + Enqueue a custom workflow for execution. + + Validates parameters, performs admission control, persists execution data + in Redis, and enqueues the job to the RQ inference queue. + + Parameters + ---------- + workflow_name : str + Name of the registered workflow. + request : WorkflowExecutionRequest + Request body containing workflow parameters. + + Returns + ------- + WorkflowExecutionResponse + Execution ID, status (QUEUED), queue position, and message. + + Raises + ------ + HTTPException + 404 if workflow not found; 422 if parameters invalid; 429 if queues full; + 503 if Redis/queue not initialized; 500 on enqueue failure. + """ + # Check if workflow exists and get the workflow class for validation custom_workflow_class = workflow_registry.get_workflow_class(workflow_name) if not custom_workflow_class: raise HTTPException( @@ -467,7 +583,7 @@ async def execute_workflow( status_code=503, detail="Inference queue not initialized" ) job = inference_queue.enqueue( - "api_server.worker.run_custom_workflow", # New worker function + "earth2studio.serve.server.worker.run_custom_workflow", workflow_name, execution_id, validated_params_dict, @@ -522,7 +638,26 @@ async def execute_workflow( "/v1/infer/{workflow_name}/{execution_id}/status", response_model=WorkflowResult ) async def get_workflow_status(workflow_name: str, execution_id: str) -> WorkflowResult: - """Get status of a workflow execution""" + """ + Get the status of a workflow execution. + + Parameters + ---------- + workflow_name : str + Name of the workflow. + execution_id : str + Unique execution identifier. + + Returns + ------- + WorkflowResult + Current status, progress, timestamps, and optional queue position. + + Raises + ------ + HTTPException + 404 if workflow or execution not found; 500 on server error. + """ # Create logger adapter with execution_id log = logging.LoggerAdapter(logger, {"execution_id": execution_id}) @@ -574,7 +709,27 @@ async def get_workflow_status(workflow_name: str, execution_id: str) -> Workflow async def get_workflow_results( workflow_name: str, execution_id: str ) -> dict[str, Any] | StreamingResponse: - """Get metadata.json for a workflow execution""" + """ + Get result metadata (e.g. metadata.json) for a completed workflow execution. + + Parameters + ---------- + workflow_name : str + Name of the workflow. + execution_id : str + Unique execution identifier. + + Returns + ------- + dict + JSON metadata (e.g. from metadata_{workflow_name}:{execution_id}.json). + + Raises + ------ + HTTPException + 202 if still queued/running/pending; 400 if expired or bad request; + 404 if workflow, execution, or metadata file not found, or if execution failed/cancelled. + """ # Create logger adapter with execution_id log = logging.LoggerAdapter(logger, {"execution_id": execution_id}) @@ -687,13 +842,29 @@ async def get_workflow_result_file( """ Stream a specific file from the workflow execution results. - Args: - workflow_name: Name of the workflow - execution_id: Execution ID - filepath: Relative path to the file within the output directory - - Returns: - Streaming response with the file contents + If filepath equals the request ID (workflow_name:execution_id), streams the + results zip file. Otherwise serves a file from the output directory (path + normalized and checked to prevent directory traversal). + + Parameters + ---------- + workflow_name : str + Name of the workflow. + execution_id : str + Execution identifier. + filepath : str + Relative path within the output directory, or the request ID for the zip. + + Returns + ------- + StreamingResponse + File or zip contents with appropriate headers. + + Raises + ------ + HTTPException + 403 on path traversal attempt; 404 if workflow, execution, file, or zip + not found or results not completed; 503 if Redis not initialized; 500 on error. """ # Check if workflow exists and is exposed custom_workflow_class = workflow_registry.get_workflow_class(workflow_name) @@ -909,8 +1080,6 @@ async def get_workflow_result_file( if __name__ == "__main__": - import uvicorn - uvicorn.run( app, host=config.server.host, # noqa: S104 diff --git a/serve/inferenceserver/api_server/object_storage.py b/earth2studio/serve/server/object_storage.py similarity index 90% rename from serve/inferenceserver/api_server/object_storage.py rename to earth2studio/serve/server/object_storage.py index 7961df4ff..42f8e07a9 100644 --- a/serve/inferenceserver/api_server/object_storage.py +++ b/earth2studio/serve/server/object_storage.py @@ -14,18 +14,6 @@ # See the License for the specific language governing permissions and # limitations under the License. -""" -Object Storage Module - -This module provides object storage functionality using NVIDIA Multi-Storage Client (MSC) -with Rust backend for high-performance parallel file transfers. - -Example: - >>> from api_server.object_storage import MSCObjectStorage - >>> storage = MSCObjectStorage(bucket="my-bucket", region="us-east-1") - >>> storage.upload_directory("/path/to/local/dir", "remote/prefix") -""" - import base64 import datetime import logging @@ -41,7 +29,22 @@ @dataclass class UploadResult: - """Result of an upload operation""" + """ + Result of an upload operation. + + Attributes + ---------- + success : bool + Whether the upload completed without errors. + files_uploaded : int + Number of files uploaded. + total_bytes : int + Total bytes uploaded. + destination : str + Destination path or URI. + errors : list of str + List of error messages, if any. + """ success: bool files_uploaded: int @@ -61,9 +64,9 @@ class ObjectStorage(ABC): """ Abstract base class for object storage operations. - This class defines the interface that all object storage implementations must follow. - Subclasses should implement the abstract methods to provide functionality for - specific cloud providers (AWS S3, GCS, Azure Blob Storage, etc.). + Defines the interface that all object storage implementations must follow. + Subclasses implement the abstract methods for specific cloud providers + (AWS S3, GCS, Azure Blob Storage, etc.). """ @abstractmethod @@ -77,20 +80,31 @@ def upload_directory( """ Upload a local directory to the object store at the specified path. - Args: - local_directory: Path to the local directory to upload. - remote_prefix: The prefix/path in the bucket where files will be uploaded. - Files will maintain their relative paths under this prefix. - recursive: If True, recursively upload all subdirectories. - overwrite: If True, overwrite existing files in the destination. - - Returns: - UploadResult containing details about the upload operation. - - Raises: - FileNotFoundError: If the local directory does not exist. - PermissionError: If there are permission issues with the bucket. - ObjectStorageError: For other storage-related errors. + Parameters + ---------- + local_directory : str or Path + Path to the local directory to upload. + remote_prefix : str + Prefix/path in the bucket where files will be uploaded. + Files maintain their relative paths under this prefix. + recursive : bool, optional + If True, recursively upload all subdirectories. Default is True. + overwrite : bool, optional + If True, overwrite existing files in the destination. Default is True. + + Returns + ------- + UploadResult + Details about the upload operation. + + Raises + ------ + FileNotFoundError + If the local directory does not exist. + PermissionError + If there are permission issues with the bucket. + ObjectStorageError + For other storage-related errors. """ pass @@ -104,12 +118,18 @@ def upload_file( """ Upload a single file to the object store. - Args: - local_file: Path to the local file to upload. - remote_key: The full key/path in the bucket for the file. - overwrite: If True, overwrite if the file already exists. - - Returns: + Parameters + ---------- + local_file : str or Path + Path to the local file to upload. + remote_key : str + Full key/path in the bucket for the file. + overwrite : bool, optional + If True, overwrite if the file already exists. Default is True. + + Returns + ------- + bool True if upload was successful, False otherwise. """ pass @@ -119,10 +139,14 @@ def file_exists(self, remote_key: str) -> bool: """ Check if a file exists in the object store. - Args: - remote_key: The full key/path in the bucket. + Parameters + ---------- + remote_key : str + Full key/path in the bucket. - Returns: + Returns + ------- + bool True if the file exists, False otherwise. """ pass @@ -132,10 +156,14 @@ def delete_file(self, remote_key: str) -> bool: """ Delete a file from the object store. - Args: - remote_key: The full key/path in the bucket. + Parameters + ---------- + remote_key : str + Full key/path in the bucket. - Returns: + Returns + ------- + bool True if deletion was successful, False otherwise. """ pass @@ -145,15 +173,25 @@ def generate_signed_url(self, remote_key: str, expires_in: int = 86400) -> str: """ Generate a signed URL for a file in the object store. - Args: - remote_key: The full key/path in the bucket. - expires_in: The number of seconds the URL will be valid for. + Parameters + ---------- + remote_key : str + Full key/path in the bucket. + expires_in : int, optional + Number of seconds the URL will be valid for. Default is 86400. + + Returns + ------- + str + Signed URL string. """ pass class ObjectStorageError(Exception): - """Base exception for object storage errors""" + """ + Base exception for object storage errors. + """ pass @@ -632,7 +670,9 @@ def file_exists(self, remote_key: str) -> bool: Args: remote_key: The storage key to check. - Returns: + Returns + ------- + bool True if the file exists, False otherwise. """ try: @@ -651,7 +691,9 @@ def delete_file(self, remote_key: str) -> bool: Args: remote_key: The storage key to delete. - Returns: + Returns + ------- + bool True if successful, False otherwise. """ try: @@ -666,7 +708,19 @@ def delete_file(self, remote_key: str) -> bool: return False def _rsa_signer(self, message: bytes) -> bytes: - """Sign a message using the CloudFront private key.""" + """ + Sign a message using the CloudFront private key. + + Parameters + ---------- + message : bytes + Message to sign. + + Returns + ------- + bytes + RSA signature. + """ from cryptography.hazmat.primitives import hashes from cryptography.hazmat.primitives.asymmetric import padding from cryptography.hazmat.primitives.serialization import load_pem_private_key @@ -687,7 +741,19 @@ def _rsa_signer(self, message: bytes) -> bytes: @staticmethod def _url_safe_b64(data: bytes) -> str: - """Convert bytes to URL-safe base64.""" + """ + Convert bytes to URL-safe base64. + + Parameters + ---------- + data : bytes + Data to encode. + + Returns + ------- + str + URL-safe base64 string. + """ return ( base64.b64encode(data) .decode("utf-8") @@ -826,44 +892,3 @@ def _generate_azure_sas_url(self, remote_key: str, expires_in: int) -> str: f"Generated Azure SAS URL for {remote_key}, expires in {expires_in}s" ) return signed_url - - -def get_object_storage( - provider: Literal["msc"] = "msc", - **kwargs: Any, -) -> ObjectStorage: - """ - Factory function to get an object storage instance. - - This function provides a convenient way to instantiate the MSCObjectStorage - implementation which uses NVIDIA Multi-Storage Client with Rust backend. - - Args: - provider: The storage provider to use. Currently only "msc" is supported. - **kwargs: Provider-specific configuration arguments. - - Returns: - An ObjectStorage instance. - - Raises: - ValueError: If an unsupported provider is specified. - - Example: - >>> storage = get_object_storage( - ... "msc", - ... bucket="my-bucket", - ... region="us-east-1", - ... use_rust_client=True - ... ) - """ - providers = { - "msc": MSCObjectStorage, - } - - if provider not in providers: - raise ValueError( - f"Unsupported storage provider: {provider}. " - f"Supported providers: {list(providers.keys())}" - ) - - return providers[provider](**kwargs) diff --git a/serve/inferenceserver/api_server/utils.py b/earth2studio/serve/server/utils.py similarity index 94% rename from serve/inferenceserver/api_server/utils.py rename to earth2studio/serve/server/utils.py index 2c6d725df..1cc044caa 100644 --- a/serve/inferenceserver/api_server/utils.py +++ b/earth2studio/serve/server/utils.py @@ -34,7 +34,7 @@ from fastapi import HTTPException from rq import Queue -from api_server.config import get_config +from earth2studio.serve.server.config import get_config logger = logging.getLogger(__name__) @@ -201,7 +201,9 @@ async def create_file_stream( def queue_next_stage( redis_client: redis.Redis, - current_stage: Stage, + current_stage: Literal[ + "inference", "result_zip", "object_storage", "geocatalog_ingestion" + ], workflow_name: str, execution_id: str, output_path_str: str, @@ -232,7 +234,7 @@ def queue_next_stage( if current_stage == "inference": # Always go to result_zip stage (for manifest building), but control zip creation via config next_queue = "result_zip" - next_func = "api_server.cpu_worker.process_result_zip" + next_func = "earth2studio.serve.server.cpu_worker.process_result_zip" # Pass create_zip parameter based on config # Disable zip creation when object storage is enabled (files uploaded directly) create_zip = ( @@ -249,11 +251,13 @@ def queue_next_stage( elif current_stage == "result_zip": if config.object_storage.enabled: next_queue = "object_storage" - next_func = "api_server.cpu_worker.process_object_storage_upload" + next_func = ( + "earth2studio.serve.server.cpu_worker.process_object_storage_upload" + ) args = (workflow_name, execution_id, output_path_str) else: next_queue = "finalize_metadata" - next_func = "api_server.cpu_worker.process_finalize_metadata" + next_func = "earth2studio.serve.server.cpu_worker.process_finalize_metadata" args = (workflow_name, execution_id) elif current_stage == "object_storage": @@ -268,7 +272,7 @@ def queue_next_stage( elif current_stage == "geocatalog_ingestion": next_queue = "finalize_metadata" - next_func = "api_server.cpu_worker.process_finalize_metadata" + next_func = "earth2studio.serve.server.cpu_worker.process_finalize_metadata" args = (workflow_name, execution_id) else: diff --git a/serve/inferenceserver/api_server/worker.py b/earth2studio/serve/server/worker.py similarity index 79% rename from serve/inferenceserver/api_server/worker.py rename to earth2studio/serve/server/worker.py index f8ff9c601..804c6d3e0 100644 --- a/serve/inferenceserver/api_server/worker.py +++ b/earth2studio/serve/server/worker.py @@ -14,14 +14,6 @@ # See the License for the specific language governing permissions and # limitations under the License. -""" -Earth2Studio RQ Worker - -This module contains the worker functions for processing inference requests -using Redis Queue (RQ). Workers run the actual inference computations. - -""" - import logging import time from datetime import datetime, timezone @@ -31,13 +23,13 @@ import redis # type: ignore[import-untyped] # Import configuration -from api_server.config import get_config, get_config_manager +from earth2studio.serve.server.config import get_config, get_config_manager # Import queue_next_stage utility -from api_server.utils import queue_next_stage +from earth2studio.serve.server.utils import queue_next_stage # Import workflow registry -from api_server.workflow import WorkflowStatus, workflow_registry +from earth2studio.serve.server.workflow import WorkflowStatus, workflow_registry # Get configuration config = get_config() @@ -67,7 +59,7 @@ # Register custom workflows in the worker process try: - from api_server.workflow import register_all_workflows + from earth2studio.serve.server.workflow import register_all_workflows register_all_workflows(redis_client) logger.info("Custom workflows registered successfully in worker process") @@ -86,7 +78,25 @@ def get_output_path( workflow_type: str, request_id: str, ) -> Path: - """Generate output path for workflow results""" + """ + Generate output path for workflow results. + + Parameters + ---------- + io_config : dict or None + I/O configuration (used for backend_type); if None, backend_type defaults to "zarr". + timestamp : str + Timestamp string used in the output directory name. + workflow_type : str + Type of workflow (e.g. workflow name). + request_id : str + Request identifier. + + Returns + ------- + Path + Path to the forecast output file (e.g. forecast.zarr). + """ # Create timestamp-based subdirectory timestamp_str = timestamp.replace(":", "").replace("Z", "").replace("+", "") output_dir = DEFAULT_OUTPUT_DIR / f"{workflow_type}_{timestamp_str}_{request_id}" @@ -99,7 +109,33 @@ def get_output_path( def run_custom_workflow( workflow_name: str, execution_id: str, parameters: dict[str, Any] ) -> Any: - """RQ Worker function to run custom workflow""" + """ + RQ worker function to run a custom workflow. + + Executes the workflow, updates execution status in Redis, and queues the + next pipeline stage (e.g. result_zip or object_storage) as configured. + + Parameters + ---------- + workflow_name : str + Name of the registered workflow to run. + execution_id : str + Unique execution identifier. + parameters : dict + Workflow input parameters (validated by the workflow's parameter type). + + Returns + ------- + Any + Result returned by the workflow's run() method. + + Raises + ------ + ValueError + If the workflow is not found or cannot be instantiated. + RuntimeError + If queuing the next pipeline stage fails. + """ # Create logger adapter with execution_id for automatic log prefixing log = logging.LoggerAdapter(logger, {"execution_id": execution_id}) @@ -112,11 +148,13 @@ def run_custom_workflow( # Create workflow instance for execution custom_workflow = workflow_registry.get(workflow_name, redis_client=redis_client) + if custom_workflow is None: + raise ValueError(f"Custom workflow '{workflow_name}' could not be instantiated") try: start_timestamp = time.time() start_time = datetime.now(timezone.utc).isoformat() - updates = { + updates: dict[str, Any] = { "status": WorkflowStatus.RUNNING, "start_time": start_time, } diff --git a/serve/inferenceserver/api_server/workflow/workflow.py b/earth2studio/serve/server/workflow.py similarity index 75% rename from serve/inferenceserver/api_server/workflow/workflow.py rename to earth2studio/serve/server/workflow.py index 8e786c34b..c262bdefd 100644 --- a/serve/inferenceserver/api_server/workflow/workflow.py +++ b/earth2studio/serve/server/workflow.py @@ -14,12 +14,6 @@ # See the License for the specific language governing permissions and # limitations under the License. -""" -Workflow module - -This module provides the base classes and functionality for custom workflows. -""" - import importlib.util import json import logging @@ -31,10 +25,10 @@ from typing import Any, Union import redis # type: ignore[import-untyped] -from pydantic import BaseModel, ConfigDict, Field, field_validator +from pydantic import BaseModel, ConfigDict, Field, ValidationInfo, field_validator # Import configuration -from api_server.config import ( +from earth2studio.serve.server.config import ( get_config, get_config_manager, get_workflow_config, @@ -50,7 +44,7 @@ class WorkflowStatus: - """Workflow execution status constants""" + """Workflow execution status constants.""" QUEUED = "queued" RUNNING = "running" @@ -62,7 +56,7 @@ class WorkflowStatus: class WorkflowArgsBase(BaseModel): - """Base parameters for workflow execution""" + """Base parameters for workflow execution.""" # Add strict validation - reject unknown fields model_config = ConfigDict(extra="forbid") @@ -78,14 +72,20 @@ def validate( It ensures that all required fields are present, types are correct, and any custom validators defined in the parameter class are executed. - Args: - data: Input data as dict or WorkflowArgsBase instance + Parameters + ---------- + data : dict or WorkflowArgsBase + Input data as dict or WorkflowArgsBase instance. - Returns: - Validated WorkflowArgsBase instance + Returns + ------- + WorkflowArgsBase + Validated WorkflowArgsBase instance. - Raises: - ValueError: If validation fails + Raises + ------ + ValueError + If validation fails. """ if isinstance(data, cls): # Already the correct type, re-validate to ensure all constraints are met @@ -109,24 +109,34 @@ class WorkflowParameters(WorkflowArgsBase): @field_validator("forecast_times", "start_time", mode="before", check_fields=False) @classmethod - def validate_datetime_list(cls, v: Any, info: Any) -> Any: + def validate_datetime_list( + cls: type["WorkflowParameters"], + v: list[str] | list[datetime] | str | datetime | None, + info: ValidationInfo, + ) -> list[str] | list[datetime] | str | datetime | None: """ Validate that forecast_times and start_time are in valid ISO 8601 datetime format. This validator handles both string lists (forecast_times) and can validate datetime objects or ISO 8601 strings (start_time). - Requires full datetime format with 'T' separator (not just date) for strings. - Args: - v: The value (can be list of strings/datetime objects, single value, or None) - info: Validation context info + Parameters + ---------- + v : list of str or datetime, or single value, or None + The value (can be list of strings/datetime objects, single value, or None). + info : ValidationInfo + Pydantic validation context (e.g. field name). - Returns: - The validated value + Returns + ------- + list of str or list of datetime or str or datetime or None + The validated value (same shape as input). - Raises: - ValueError: If any value is not in valid ISO 8601 datetime format + Raises + ------ + ValueError + If any value is not in valid ISO 8601 datetime format. """ from datetime import datetime @@ -178,7 +188,7 @@ def validate_datetime_list(cls, v: Any, info: Any) -> Any: class WorkflowConfig(WorkflowArgsBase): """ - Specialize in case we want to differentiate parameters and config handling later. + Specialize in case we want to differentiate parameters and config handling later. """ pass @@ -191,38 +201,46 @@ class WorkflowProgress(BaseModel): This class provides standard progress tracking fields that can be extended by custom workflows to include additional tracking information. - Attributes: - progress: Human-readable progress message - current_step: Current step number in the workflow - total_steps: Total number of steps in the workflow - error_message: Error message to report specific errors when workflow fails - - Example: - Basic usage: - progress = WorkflowProgress( - progress="Processing data...", - current_step=3, - total_steps=10 - ) - - Error reporting: - progress = WorkflowProgress( - progress="Failed!", - error_message="Connection timeout: Could not reach data source" - ) - - Extended for custom workflow: - class MyCustomProgress(WorkflowProgress): - data_processed_gb: float = 0.0 - error_count: int = 0 - - progress = MyCustomProgress( - progress="Processing batch 5", - current_step=5, - total_steps=20, - data_processed_gb=150.5, - error_count=2 - ) + Attributes + ---------- + progress : str or None + Human-readable progress message. + current_step : int or None + Current step number in the workflow. + total_steps : int or None + Total number of steps in the workflow. + error_message : str or None + Error message to report specific errors when workflow fails. + + Examples + -------- + Basic usage: + + >>> progress = WorkflowProgress( + ... progress="Processing data...", + ... current_step=3, + ... total_steps=10 + ... ) + + Error reporting: + + >>> progress = WorkflowProgress( + ... progress="Failed!", + ... error_message="Connection timeout: Could not reach data source" + ... ) + + Extended for custom workflow: + + >>> class MyCustomProgress(WorkflowProgress): + ... data_processed_gb: float = 0.0 + ... error_count: int = 0 + >>> progress = MyCustomProgress( + ... progress="Processing batch 5", + ... current_step=5, + ... total_steps=20, + ... data_processed_gb=150.5, + ... error_count=2 + ... ) """ progress: str | None = None @@ -232,7 +250,7 @@ class MyCustomProgress(WorkflowProgress): class WorkflowResult(BaseModel): - """Base result structure for workflow execution""" + """Base result structure for workflow execution.""" workflow_name: str execution_id: str @@ -276,14 +294,16 @@ def __init__(self) -> None: """ Initialize workflow. - Note: name and description are set by the registry during workflow instantiation. + Notes + ----- + name and description are set by the registry during workflow instantiation. """ self.redis_client: redis.Redis | None = None self.output_dir = Path(config.paths.default_output_dir) self.output_dir.mkdir(parents=True, exist_ok=True) def set_redis_client(self, redis_client: redis.Redis) -> None: - """Set Redis client for state management""" + """Set Redis client for state management.""" self.redis_client = redis_client @classmethod @@ -298,19 +318,26 @@ def validate_parameters( Pydantic field validation and model validation. Subclasses should implement this method to specify their parameter type. - Args: - parameters: Input parameters as dict or WorkflowParameters instance + Parameters + ---------- + parameters : dict or WorkflowParameters + Input parameters as dict or WorkflowParameters instance. - Returns: - Validated WorkflowParameters instance of the workflow-specific type + Returns + ------- + WorkflowParameters + Validated WorkflowParameters instance of the workflow-specific type. - Raises: - ValueError: If validation fails + Raises + ------ + ValueError + If validation fails. - Example: - @classmethod - def validate_parameters(cls, parameters): - return MyWorkflowParameters.validate(parameters) + Examples + -------- + >>> @classmethod + ... def validate_parameters(cls, parameters): + ... return MyWorkflowParameters.validate(parameters) """ raise NotImplementedError( "Subclasses must implement validate_parameters() method" @@ -326,12 +353,17 @@ def run( This method should implement the actual workflow logic. It will be called when a POST request is made to /v1/infer/{workflow_name}. - Args: - parameters: Input parameters for the workflow (dict or WorkflowParameters) - execution_id: Unique execution identifier + Parameters + ---------- + parameters : dict or WorkflowParameters + Input parameters for the workflow. + execution_id : str + Unique execution identifier. - Returns: - Dictionary containing workflow results + Returns + ------- + dict + Dictionary containing workflow results. """ raise NotImplementedError("Subclasses must implement run() method") @@ -344,41 +376,49 @@ def update_execution_data( This method can be called by workflow implementations to update specific fields in the execution data without replacing the entire record. - Args: - execution_id: Unique execution identifier - updates: Dictionary of fields to update, or WorkflowProgress instance. - If a WorkflowProgress object is provided, it will update the - 'progress' field of WorkflowResult. Dict updates can include - any WorkflowResult fields including 'progress', 'metadata', etc. - - Raises: - RuntimeError: If Redis client is not set - - Example: - # Using dict for general updates - self.update_execution_data(execution_id, { - "metadata": {"custom_field": "value"} - }) - - # Using WorkflowProgress for progress updates - progress = WorkflowProgress( - progress="Processing data...", - current_step=3, - total_steps=10 - ) - self.update_execution_data(execution_id, progress) - - # Using custom WorkflowProgress subclass - class MyProgress(WorkflowProgress): - data_processed_gb: float = 0.0 - - progress = MyProgress( - progress="Batch processing", - current_step=5, - total_steps=20, - data_processed_gb=150.5 - ) - self.update_execution_data(execution_id, progress) + Parameters + ---------- + execution_id : str + Unique execution identifier. + updates : dict or WorkflowProgress + Dictionary of fields to update, or WorkflowProgress instance. + If a WorkflowProgress object is provided, it will update the + 'progress' field of WorkflowResult. Dict updates can include + any WorkflowResult fields including 'progress', 'metadata', etc. + + Raises + ------ + RuntimeError + If Redis client is not set. + + Examples + -------- + Using dict for general updates: + + >>> self.update_execution_data(execution_id, { + ... "metadata": {"custom_field": "value"} + ... }) + + Using WorkflowProgress for progress updates: + + >>> progress = WorkflowProgress( + ... progress="Processing data...", + ... current_step=3, + ... total_steps=10 + ... ) + >>> self.update_execution_data(execution_id, progress) + + Using custom WorkflowProgress subclass: + + >>> class MyProgress(WorkflowProgress): + ... data_processed_gb: float = 0.0 + >>> progress = MyProgress( + ... progress="Batch processing", + ... current_step=5, + ... total_steps=20, + ... data_processed_gb=150.5 + ... ) + >>> self.update_execution_data(execution_id, progress) """ if not self.redis_client: raise RuntimeError("Redis client not set. Call set_redis_client() first.") @@ -414,11 +454,15 @@ def get_output_path(self, execution_id: str) -> Path: output directory path for a specific execution. The directory is automatically created if it doesn't exist. - Args: - execution_id: Unique execution identifier + Parameters + ---------- + execution_id : str + Unique execution identifier. - Returns: - Path object pointing to the output directory + Returns + ------- + Path + Path object pointing to the output directory. """ workflow_dir = self.output_dir / self.name / execution_id workflow_dir.mkdir(parents=True, exist_ok=True) @@ -434,13 +478,19 @@ def _get_execution_data( This method can only be called by the system, and should not be called by workflow implementations. - Args: - redis_client: Redis client instance - workflow_name: Name of the workflow - execution_id: Unique execution identifier + Parameters + ---------- + redis_client : redis.Redis + Redis client instance. + workflow_name : str + Name of the workflow. + execution_id : str + Unique execution identifier. - Returns: - WorkflowResult with execution data + Returns + ------- + WorkflowResult + Execution data. """ try: # Get execution data from Redis @@ -477,11 +527,16 @@ def _save_execution_data( This method can only be called by the system, and should not be called by workflow implementations. - Args: - redis_client: Redis client instance - workflow_name: Name of the workflow - execution_id: Unique execution identifier - data: WorkflowResult to save + Parameters + ---------- + redis_client : redis.Redis + Redis client instance. + workflow_name : str + Name of the workflow. + execution_id : str + Unique execution identifier. + data : WorkflowResult + WorkflowResult to save. """ try: redis_client.setex( @@ -508,11 +563,16 @@ def _update_execution_data( This method can only be called by the system, and should not be called by workflow implementations. - Args: - redis_client: Redis client instance - workflow_name: Name of the workflow - execution_id: Unique execution identifier - updates: Dictionary of fields to update + Parameters + ---------- + redis_client : redis.Redis + Redis client instance. + workflow_name : str + Name of the workflow. + execution_id : str + Unique execution identifier. + updates : dict + Dictionary of fields to update. """ try: # Get current data @@ -535,7 +595,7 @@ def _update_execution_data( def json_serial(obj: Any) -> Any: - """JSON serializer for objects not serializable by default json code""" + """JSON serializer for objects not serializable by default json code.""" if isinstance(obj, (datetime, date)): return obj.isoformat() @@ -545,7 +605,7 @@ def json_serial(obj: Any) -> Any: class WorkflowRegistry: - """Registry for managing custom workflows""" + """Registry for managing custom workflows.""" def __init__(self, **config: Any) -> None: self._workflows: dict[str, type[Workflow]] = {} @@ -555,15 +615,22 @@ def register(self, workflow_class: type[Workflow]) -> type[Workflow]: """ Register a workflow class. - Args: - workflow_class: Workflow class (not instance) to register + Parameters + ---------- + workflow_class : type[Workflow] + Workflow class (not instance) to register. - Returns: - workflow_class (enabling the use of ``register`` as a decorator) + Returns + ------- + type[Workflow] + workflow_class (enabling the use of ``register`` as a decorator). - Raises: - TypeError: If workflow_class is not a class or not a Workflow subclass - ValueError: If workflow name is already registered + Raises + ------ + TypeError + If workflow_class is not a class or not a Workflow subclass. + ValueError + If workflow name is already registered. """ # Skip registration in a non-API environment api_server_running = os.environ.get("EARTH2STUDIO_API_ACTIVE", "0") == "1" @@ -598,7 +665,7 @@ def register(self, workflow_class: type[Workflow]) -> type[Workflow]: return workflow_class def unregister(self, name: str) -> None: - """Unregister a workflow""" + """Unregister a workflow.""" if name not in self._workflows: raise ValueError(f"Workflow '{name}' is not registered") @@ -612,11 +679,15 @@ def get_workflow_class(self, name: str) -> type[Workflow] | None: """ Get a workflow class by name. - Args: - name: Name of the workflow + Parameters + ---------- + name : str + Name of the workflow. - Returns: - Workflow class or None if not found + Returns + ------- + type[Workflow] or None + Workflow class or None if not found. """ return self._workflows.get(name) @@ -629,12 +700,17 @@ def get( Creates a new instance on first call and caches it for subsequent calls. The instance is automatically initialized with the registered name and description. - Args: - name: Name of the workflow - redis_client: Optional Redis client to set on the instance + Parameters + ---------- + name : str + Name of the workflow. + redis_client : redis.Redis or None, optional + Optional Redis client to set on the instance. - Returns: - Cached workflow instance or None if not found + Returns + ------- + Workflow or None + Cached workflow instance or None if not found. """ workflow_class = self.get_workflow_class(name) if workflow_class is None: @@ -677,7 +753,7 @@ def is_workflow_exposed(self, workflow_name: str) -> bool: Returns: True if workflow should be exposed, False otherwise """ - from api_server.config import get_config + from earth2studio.serve.server.config import get_config config = get_config() exposed_workflows = config.workflow_exposure.exposed_workflows @@ -703,7 +779,7 @@ def list_workflows(self, exposed_only: bool = True) -> dict[str, str]: Dictionary mapping workflow names to descriptions """ if exposed_only: - from api_server.config import get_config + from earth2studio.serve.server.config import get_config config = get_config() exposed_workflows = config.workflow_exposure.exposed_workflows @@ -734,16 +810,24 @@ def discover_and_register_from_directories( """ Discover and register workflows from specified directories. - Args: - workflow_dirs: List of directory paths to search for workflow modules - include_builtin: Whether to automatically include built-in example_workflows + Parameters + ---------- + workflow_dirs : list + List of directory paths to search for workflow modules. + include_builtin : bool, optional + Whether to automatically include built-in example_workflows. Default is True. - Returns: - tuple: (successful_imports, failed_imports) counts + Returns + ------- + tuple + (successful_imports, failed_imports) counts. """ - # Always include built-in workflows if requested + # Always include built-in workflows if requested (serve/server/example_workflows) if include_builtin: - builtin_workflows_dir = Path(__file__).parent.parent / "example_workflows" + _repo_root = Path(__file__).resolve().parent.parent.parent.parent + builtin_workflows_dir = ( + _repo_root / "serve" / "server" / "example_workflows" + ) already_included = builtin_workflows_dir in {Path(d) for d in workflow_dirs} if builtin_workflows_dir.exists() and not already_included: # Add to the beginning so built-in workflows are discovered first @@ -829,8 +913,10 @@ def auto_register_workflows(self, redis_client: redis.Redis) -> None: This is the main entry point for workflow registration during server startup. - Args: - redis_client: Redis client instance to set on registered workflows + Parameters + ---------- + redis_client : redis.Redis + Redis client instance to set on registered workflows. """ try: logger.info("=" * 60) @@ -878,8 +964,10 @@ def parse_workflow_directories_from_env() -> list[str]: - Comma-separated list of directories - Colon-separated list of directories - Returns: - list: List of directory paths to search for workflows + Returns + ------- + list of str + List of directory paths to search for workflows. """ workflow_dirs = [] @@ -918,13 +1006,16 @@ def register_all_workflows(redis_client: redis.Redis) -> None: 1. Built-in example_workflows directory (always included) 2. User directories specified via WORKFLOW_DIR environment variable - Args: - redis_client: Redis client instance to set on registered workflows - - Example: - >>> import redis - >>> from api_server.workflow import register_all_workflows - >>> redis_client = redis.Redis(host='localhost', port=6379) - >>> register_all_workflows(redis_client) + Parameters + ---------- + redis_client : redis.Redis + Redis client instance to set on registered workflows. + + Examples + -------- + >>> import redis + >>> from earth2studio.serve.server.workflow import register_all_workflows + >>> redis_client = redis.Redis(host='localhost', port=6379) + >>> register_all_workflows(redis_client) """ workflow_registry.auto_register_workflows(redis_client) diff --git a/earth2studio/utils/coords.py b/earth2studio/utils/coords.py index 62f1d85ae..c8259f6c2 100644 --- a/earth2studio/utils/coords.py +++ b/earth2studio/utils/coords.py @@ -14,14 +14,22 @@ # See the License for the specific language governing permissions and # limitations under the License. +import warnings from collections import OrderedDict +from copy import deepcopy from typing import Literal import numpy as np import torch +import xarray as xr from earth2studio.utils.type import CoordSystem +try: + import cupy as cp +except ImportError: + cp = None + def handshake_dim( input_coords: CoordSystem, @@ -75,7 +83,7 @@ def handshake_dim( def handshake_coords( input_coords: CoordSystem, target_coords: CoordSystem, - required_dim: str, + required_dim: str | list[str], ) -> None: """Simple check to see if the required dimensions have the same coordinate system @@ -85,8 +93,8 @@ def handshake_coords( Input coordinate system to validate target_coords : CoordSystem Target coordinate system - required_dim : str - Required dimension (name of coordinate) + required_dim : str | list[str] + Required dimension(s) (name of coordinate) Raises ------ KeyError @@ -94,27 +102,31 @@ def handshake_coords( ValueError If coordinates of required dimensions don't match """ - if required_dim not in input_coords: - raise KeyError( - f"Required dimension {required_dim} not found in input coordinates" - ) + if isinstance(required_dim, str): + required_dim = [required_dim] - if required_dim not in target_coords: - raise KeyError( - f"Required dimension {required_dim} not found in target coordinates" - ) + for _required_dim in required_dim: + if _required_dim not in input_coords: + raise KeyError( + f"Required dimension {_required_dim} not found in input coordinates" + ) - if input_coords[required_dim].shape != target_coords[required_dim].shape: - raise ValueError( - f"Coordinate systems for required dim {required_dim} are not the same" - ) + if _required_dim not in target_coords: + raise KeyError( + f"Required dimension {_required_dim} not found in target coordinates" + ) - if not np.all( - (input_coords[required_dim] == target_coords[required_dim]).flatten() - ): - raise ValueError( - f"Coordinate systems for required dim {required_dim} are not the same" - ) + if input_coords[_required_dim].shape != target_coords[_required_dim].shape: + raise ValueError( + f"Coordinate systems for required dim {_required_dim} are not the same" + ) + + if not np.all( + (input_coords[_required_dim] == target_coords[_required_dim]).flatten() + ): + raise ValueError( + f"Coordinate systems for required dim {_required_dim} are not the same" + ) def handshake_size( @@ -306,6 +318,198 @@ def map_coords( return x, mapped_coords +def map_coords_xr( + x: xr.DataArray, + output_coords: CoordSystem, + method: Literal["nearest"] = "nearest", +) -> xr.DataArray: + """Map xarray DataArray to target coordinate system using selection or interpolation. + + Maps an input DataArray to match the coordinates specified in output_coords by + selecting or interpolating along dimensions. Supports both numpy and cupy-backed + DataArrays. Empty coordinate arrays are ignored, and warnings are issued for + missing coordinate keys. + + Parameters + ---------- + x : xr.DataArray + Input DataArray to map. May be backed by numpy or cupy arrays. + output_coords : CoordSystem + Target coordinate system containing a subset of coordinates present in x. + Dimensions not in output_coords are preserved from the input. + method : Literal["nearest"], optional + Interpolation method for numeric coordinates, by default "nearest" + + Returns + ------- + xr.DataArray + Mapped DataArray with coordinates matching output_coords where specified. + Preserves all dimensions and coordinates not specified in output_coords. + + Raises + ------ + KeyError + If output coordinate dimension is not found in input DataArray + ValueError + If non-numeric coordinate values are not present in input coordinates + If interpolation method is not supported + """ + result = x.copy() + + # Build selection/interpolation dictionary + sel_dict = {} + interp_dict = {} + + for key, value in output_coords.items(): + # Ignore batch dimension + if key == "batch": + continue + + # Skip empty arrays (free coordinate system) + if len(value) == 0: + continue + + # Check if dimension exists in input + if key not in result.dims and key not in result.coords: + warnings.warn( + f"Coordinate key '{key}' not found in input DataArray. " + f"Available dims: {list(result.dims)}, " + f"Available coords: {list(result.coords.keys())}" + ) + continue + + # Get coordinate values from input DataArray + if key in result.coords: + coord_values = result.coords[key] + elif key in result.dims: + coord_values = result[key] + else: + continue # Should not happen due to check above + + coord_array = ( + coord_values.values if hasattr(coord_values, "values") else coord_values + ) + + # Check if coordinate types are compatible + # Check for datetime/timedelta first (these are not numeric for comparison purposes) + is_datetime = np.issubdtype(value.dtype, np.datetime64) or np.issubdtype( + coord_array.dtype, np.datetime64 + ) + is_timedelta = np.issubdtype(value.dtype, np.timedelta64) or np.issubdtype( + coord_array.dtype, np.timedelta64 + ) + # Only treat as numeric if both are numeric AND neither is datetime/timedelta + is_numeric = ( + not is_datetime + and not is_timedelta + and np.issubdtype(value.dtype, np.number) + and np.issubdtype(coord_array.dtype, np.number) + ) + + # Check if all output values are in input (exact match) + if is_numeric: + # Numeric coordinate: check if values match exactly + if len(value) == len(coord_array) and np.allclose( + value, coord_array, equal_nan=True + ): + continue # No change needed, exact match + + # Check if all values are present in input (can use selection) + if np.all(np.isin(value, coord_array)): + sel_dict[key] = value + else: + # Need interpolation for values not in input + # xarray's interp uses coordinate names and handles dimension mapping + interp_dict[key] = xr.DataArray(value, dims=[key]) + elif is_datetime or is_timedelta: + # Datetime/timedelta coordinate: use direct equality comparison + if len(value) == len(coord_array) and np.array_equal(value, coord_array): + continue # No change needed, exact match + + # Check if all values are present in input (can use selection) + if np.all(np.isin(value, coord_array)): + sel_dict[key] = value + else: + # Need interpolation for datetime/timedelta values not in input + # xarray's interp uses coordinate names and handles dimension mapping + interp_dict[key] = xr.DataArray(value, dims=[key]) + else: + # Non-numeric coordinate: must use selection, all values must be present + if not np.all(np.isin(value, coord_array)): + raise ValueError( + f"For non-numeric coordinate '{key}', all values of output coords " + f"must be in the input coordinates. Some elements of {value} are " + f"not in {coord_array}." + ) + sel_dict[key] = value + + # Apply selection first (exact matches) + if sel_dict: + result = result.sel(sel_dict) + + # Apply nearest-neighbor interpolation per dimension using torch + if interp_dict: + if method != "nearest": + raise ValueError(f"Interpolation method '{method}' not supported") + + data = result.data + is_cupy = cp is not None and isinstance(data, cp.ndarray) + dims = list(result.dims) + new_coords = dict(result.coords) + + for key, target_da in interp_dict.items(): + dim_idx = dims.index(key) + src_raw = np.asarray(result.coords[key].values) + tgt_raw = np.asarray(target_da.values) + + sort_order = np.argsort(src_raw) + src_sorted = src_raw[sort_order] + idx_sorted = np.searchsorted(src_sorted, tgt_raw) + idx_sorted = np.clip(idx_sorted, 1, len(src_sorted) - 1) + left = np.abs(tgt_raw - src_sorted[idx_sorted - 1]) + right = np.abs(tgt_raw - src_sorted[idx_sorted]) + idx_sorted = np.where(left <= right, idx_sorted - 1, idx_sorted) + + # Map back to original unsorted indices + idx = sort_order[idx_sorted] + + # Index into the data array along this dimension + if is_cupy: + idx_arr = cp.asarray(idx) + data = cp.take(data, idx_arr, axis=dim_idx) + else: + data = np.take(data, idx, axis=dim_idx) + + # Update the interpolated dimension coordinate + new_coords[key] = (key, tgt_raw) + + # Re-index any non-dimension coordinates that depend on this dim + for cname, cval in list(new_coords.items()): + if cname == key: + continue + if isinstance(cval, xr.Variable): + c_dims = cval.dims + c_data = cval.values + elif isinstance(cval, xr.DataArray): + c_dims = cval.dims + c_data = cval.values + elif isinstance(cval, tuple) and len(cval) == 2: + c_dims, c_data = cval + if isinstance(c_dims, str): + c_dims = (c_dims,) + else: + continue + + if key in c_dims: + ax = list(c_dims).index(key) + c_data = np.take(np.asarray(c_data), idx, axis=ax) + new_coords[cname] = (c_dims, c_data) + + result = xr.DataArray(data=data, dims=dims, coords=new_coords) + + return result + + def split_coords( x: torch.Tensor, coords: CoordSystem, dim: str = "variable" ) -> tuple[list[torch.Tensor], CoordSystem, np.ndarray]: @@ -429,3 +633,166 @@ def convert_multidim_to_singledim( i += j + 1 return CoordSystem(adjusted_coords), mapping + + +def tile_coords( + x: torch.Tensor, coords: CoordSystem, target_coords: CoordSystem +) -> tuple[torch.Tensor, CoordSystem]: + """Tile tensor x to match dimensions in target_coords that don't exist in coords. + + This function tiles the input tensor to match leading dimensions from target_coords + that are not present in coords. Dimensions that exist in both coords and target_coords + are ignored in target_coords and use the values from coords instead. + + Parameters + ---------- + x : torch.Tensor + Source tensor to be tiled + coords : CoordSystem + Coordinate system for x tensor + target_coords : CoordSystem + Target coordinate system. Dimensions that exist in coords are ignored. + + Returns + ------- + tuple[torch.Tensor, CoordSystem] + Tuple containing the tiled tensor and updated coordinate system + + Examples + -------- + Tiling a tensor to match additional dimensions from target_coords + + >>> from earth2studio.utils.coords import tile_coords + >>> from collections import OrderedDict + >>> import torch + >>> import numpy as np + >>> + >>> x = torch.randn(3, 4) + >>> coords = OrderedDict({ + ... "variable": np.array(["a", "b", "c"]), + ... "time": np.array([0, 1, 2, 3]) + ... }) + >>> + >>> target_coords = OrderedDict({ + ... "batch": np.array([0, 1]), + ... "ensemble": np.array([0, 1, 2]), + ... "variable": np.array(["x", "y"]), # Ignored, uses coords value + ... "time": np.array([10, 20, 30, 40]) # Ignored, uses coords value + ... }) + >>> + >>> # Tile x to match batch and ensemble dimensions + >>> x_tiled, out_coords = tile_coords(x, coords, target_coords) + >>> x_tiled.shape + torch.Size([2, 3, 3, 4]) + >>> list(out_coords.keys()) + ['batch', 'ensemble', 'variable', 'time'] + """ + coords_keys = set(coords.keys()) + leading_dims = OrderedDict() + common_dims = [] + + for key, val in target_coords.items(): + if key not in coords_keys: + leading_dims[key] = val + else: + common_dims.append(key) + + # Validate that all common dims are at the end of target_coords + if common_dims: + target_keys = list(target_coords.keys()) + coords_keys_list = list(coords.keys()) + if target_keys[-len(common_dims) :] != coords_keys_list: + raise ValueError( + f"All common dimensions must appear at the end of target_coords. " + f"Common dimensions: {coords_keys_list}, " + f"target_coords trailing keys: {target_keys[-len(common_dims):]}, " + f"target_coords order: {target_keys}" + ) + + n_lead = len(leading_dims) + + out_coords = deepcopy(leading_dims) + for key, val in coords.items(): + out_coords[key] = val + + # add leading size-1 dims so tile has one rep per dimension, then tile to match target + reps = [len(dim) for dim in leading_dims.values()] + [1] * len(x.shape) + x_tiled = x.view(*([1] * n_lead), *x.shape).tile(reps) + + return x_tiled, out_coords + + +def cat_coords( + tensors: tuple[torch.Tensor, ...], + coords: tuple[CoordSystem, ...], + dim: str = "variable", +) -> tuple[torch.Tensor, CoordSystem]: + """ + concatenate data along coordinate dimension. + + Parameters + ---------- + tensors : tuple[torch.Tensor, ...] + Tuple of input tensors to concatenate + coords : tuple[CoordSystem, ...] + Tuple of OrderedDicts representing coordinate systems for each tensor + dim : str + name of dimension along which to concatenate + + Returns + ------- + tuple[torch.Tensor, CoordSystem] + Tuple containing output tensor and coordinate OrderedDict from + concatenated data. + + Raises + ------ + ValueError + If tensors and coords have different lengths + If input tensors have different dimension names + If non-concatenation dimensions don't match across inputs + KeyError + If concatenation dimension is not found in all coordinate systems + """ + if len(tensors) != len(coords): + raise ValueError( + f"tensors and coords must have the same length, got {len(tensors)} tensors and {len(coords)} coords" + ) + + if len(tensors) == 0: + raise ValueError("at least one tensor and coord must be provided") + + if len(tensors) == 1: + return tensors[0], deepcopy(coords[0]) + + # Use first coord as reference + ref_coord = coords[0] + + # make sure cat dim is present in all tensors + handshake_dim(ref_coord, dim) + + # make sure all tensors have the same dimension names + ref_keys = list(ref_coord.keys()) + for i, coord in enumerate(coords[1:], start=1): + handshake_dim(coord, dim) + if not list(coord.keys()) == ref_keys: + raise ValueError( + f"all input tensors must have the same dimension names. " + f"Tensor 0 has {ref_keys}, tensor {i} has {list(coord.keys())}" + ) + + # make sure all the other dimensions are of equal length + other_dims = list(ref_keys) + other_dims.remove(dim) + for i, coord in enumerate(coords[1:], start=1): + handshake_coords(ref_coord, coord, other_dims) + + # assemble output coords + coz = deepcopy(ref_coord) + coz[dim] = np.concatenate([coord[dim] for coord in coords]) + + # concatenate tensors + dim_index = list(coz).index(dim) + zz = torch.cat(tensors, dim=dim_index) + + return zz, coz diff --git a/earth2studio/utils/time.py b/earth2studio/utils/time.py index e2b823892..e58b70cc0 100644 --- a/earth2studio/utils/time.py +++ b/earth2studio/utils/time.py @@ -17,7 +17,7 @@ import numpy as np -from earth2studio.utils.type import LeadTimeArray, TimeArray +from earth2studio.utils.type import LeadTimeArray, TimeArray, TimeTolerance def timearray_to_datetime(time: TimeArray) -> list[datetime]: @@ -95,3 +95,64 @@ def to_time_array(time: list[str] | list[datetime] | TimeArray) -> TimeArray: ) return np.array(output).astype("datetime64[ns]") + + +def normalize_time_tolerance( + tolerance: TimeTolerance, +) -> tuple[np.timedelta64, np.timedelta64]: + """Normalize a TimeTolerance to a tuple of (lower_bound, upper_bound) as np.timedelta64. + + Parameters + ---------- + tolerance : TimeTolerance + Time tolerance value. Can be: + - A single timedelta or np.timedelta64 (interpreted as symmetric +/- bounds) + - A tuple of (timedelta, timedelta) or (np.timedelta64, np.timedelta64) + (interpreted as (lower_bound, upper_bound)) + + Returns + ------- + tuple[np.timedelta64, np.timedelta64] + Tuple of (lower_bound, upper_bound) as np.timedelta64 values. + For a single tolerance value, returns (-tolerance, +tolerance). + For a tuple, returns the normalized bounds. + + Examples + -------- + >>> normalize_time_tolerance(np.timedelta64(1, "h")) + (numpy.timedelta64(-3600,'s'), numpy.timedelta64(3600,'s')) + + >>> normalize_time_tolerance((np.timedelta64(-2, "h"), np.timedelta64(3, "h"))) + (numpy.timedelta64(-7200,'s'), numpy.timedelta64(10800,'s')) + """ + # Handle single value (symmetric tolerance) + if isinstance(tolerance, (timedelta, np.timedelta64)): + tol = np.timedelta64(tolerance) + return (-tol, tol) + + # Handle tuple + if isinstance(tolerance, tuple): + if len(tolerance) != 2: + raise ValueError( + f"TimeTolerance tuple must have 2 elements, got {len(tolerance)}" + ) + + lower, upper = tolerance + + # Convert both to np.timedelta64 + lower_td = np.timedelta64(lower) + upper_td = np.timedelta64(upper) + + # Ensure lower <= upper + if lower_td > upper_td: + raise ValueError( + f"TimeTolerance tuple must have lower_bound <= upper_bound, " + f"got ({lower_td}, {upper_td})" + ) + + return (lower_td, upper_td) + + raise TypeError( + f"TimeTolerance must be timedelta, np.timedelta64, or tuple of 2, " + f"got {type(tolerance)}" + ) diff --git a/earth2studio/utils/type.py b/earth2studio/utils/type.py index 345f87078..2384d33d3 100644 --- a/earth2studio/utils/type.py +++ b/earth2studio/utils/type.py @@ -15,9 +15,11 @@ # limitations under the License. from collections import OrderedDict +from datetime import timedelta import numpy as np +FrameSchema = OrderedDict[str, np.ndarray] CoordSystem = OrderedDict[str, np.ndarray] # Specific dimension custom types @@ -25,3 +27,10 @@ LeadTimeArray = np.ndarray[np.timedelta64] TimeArray = np.ndarray[np.datetime64] FieldArray = np.ndarray[str] + +TimeTolerance = ( + timedelta + | np.timedelta64 + | tuple[timedelta, timedelta] + | tuple[np.timedelta64, np.timedelta64] +) diff --git a/examples/16_cbottle_super_resolution.py b/examples/16_cbottle_super_resolution.py index 60209aa64..fa11adc19 100644 --- a/examples/16_cbottle_super_resolution.py +++ b/examples/16_cbottle_super_resolution.py @@ -92,6 +92,7 @@ package, output_resolution=(1024, 1024), super_resolution_window=super_resolution_window, + distilled_model=True, ) # Load the infill model diff --git a/examples/21_stormcast_sda.py b/examples/21_stormcast_sda.py new file mode 100644 index 000000000..610038dd6 --- /dev/null +++ b/examples/21_stormcast_sda.py @@ -0,0 +1,488 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +# %% +""" +StormCast Score-Based Data Assimilation +======================================= + +Running StormCast with guided diffusion posterior sampling to assimilate observations. + +This example demonstrates how to use the StormCast score-based data assimilation (SDA) +model for convection-allowing regional forecasts that incorporate sparse in-situ +observations using diffusion posterior sampling (DPS). +Two forecasts are run—one without observations and one with ISD surface station data +from central United States region to illustrate the impact of data assimilation. + +In this example you will learn: + +- How to load and initialise the StormCast score-based data assimilation (SDA) model +- Fetching HRRR initial conditions and ISD surface observations +- Running the model iteratively with and without observation assimilation +- Comparing assimilated and non-assimilated forecasts +""" +# /// script +# dependencies = [ +# "earth2studio[da-stormcast] @ git+https://github.com/NVIDIA/earth2studio.git", +# "cartopy", +# ] +# /// + +# %% +# Set Up +# ------ +# This example requires the following components: +# +# - Assimilation Model: StormCast SDA :py:class:`earth2studio.models.da.StormCastSDA`. +# - Datasource (state): HRRR analysis :py:class:`earth2studio.data.HRRR`. +# - Datasource (obs): NOAA ISD surface stations :py:class:`earth2studio.data.ISD`. +# - Datasource (conditioning): GFS forecasts :py:class:`earth2studio.data.GFS_FX` +# (loaded automatically by the model). +# +# StormCast score-based data assimilation (SDA) extends StormCast with diffusion +# posterior sampling (DPS) guidance, +# allowing sparse point observations to steer the generative diffusion process. + +# %% +import os + +os.makedirs("outputs", exist_ok=True) +from dotenv import load_dotenv + +load_dotenv() # TODO: make common example prep function + +from collections import OrderedDict +from datetime import timedelta + +import numpy as np +import torch +import xarray as xr +from loguru import logger +from tqdm import tqdm + +logger.remove() +logger.add(lambda msg: tqdm.write(msg, end=""), colorize=True) + +from earth2studio.data import HRRR, ISD, fetch_data +from earth2studio.models.da import StormCastSDA +from earth2studio.utils.coords import map_coords_xr + +package = StormCastSDA.load_default_package() +# Load the model onto the GPU and configure SDA +# sda_std_obs: assumed (normalized) observation noise std (lower = trust obs more) +# sda_gamma: DPS guidance scaling factor (lower = stronger assimilation) +model = StormCastSDA.load_model(package, sda_std_obs=0.1, sda_gamma=1e-4) +model = model.to("cuda:0") + +hrrr = HRRR() + +# %% +# Fetch Initial Conditions +# ------------------------ +# Pull HRRR analysis data for April 3rd 2025, a date that saw a major tornado +# outbreak across the central United States, and select the sub-grid that +# StormCast expects. The model's :py:meth:`init_coords` describes the required +# coordinate system. + +# %% +init_time = np.array([np.datetime64("2025-04-03T18:00")]) +ic = model.init_coords()[0] + +x = fetch_data( + hrrr, + time=init_time, + variable=ic["variable"], + lead_time=np.array([np.timedelta64(0, "h")]), + device="cuda:0", + legacy=False, +) +x = map_coords_xr(x, ic) + +# %% +# Run Without Observations +# ------------------------ +# Step the model forward 6 hours without any observations. This is equivalent to using +# the StormCast prognostic model as it will just use EDM diffusion sampling under the +# hood. Each call to ``model.send(None)`` advances the state by one hour. +# We store only the surface variables used for comparison (u10m, v10m, t2m). + +# %% +nsteps = 6 +plot_vars = ["u10m", "v10m", "t2m"] + +np.random.seed(42) +torch.manual_seed(42) +if torch.cuda.is_available(): + torch.cuda.manual_seed_all(42) + +no_obs_frames = [] +gen = model.create_generator(x.copy()) +x_state = next(gen) # Prime the generator, yields initial state + +for step in tqdm(range(nsteps), desc="No-obs forecast"): + logger.info(f"Running no-obs forecast step {step}") + x_state = gen.send(None) # Advance one hour without observations + no_obs_frames.append(x_state.sel(variable=plot_vars).copy()) + +gen.close() +no_obs_da = xr.concat(no_obs_frames, dim="lead_time") + +# Save to Zarr (convert to numpy for storage) +no_obs_np = no_obs_da.copy(data=no_obs_da.data.get()) +no_obs_np.to_dataset(name="prediction").to_zarr("outputs/21_no_obs.zarr", mode="w") + +# %% +# Fetch Observations and Run With Assimilation +# --------------------------------------------- +# Fetch NOAA Integrated Surface Database (ISD) surface observations from the central +# United States and assimilate them at each forecast step. The observations are fetched +# for the valid time (initialisation time + lead time) so the model assimilates +# temporally relevant data. + +# %% +stations = ISD.get_stations_bbox((32.0, -105.0, 45.0, -90.0)) +isd = ISD(stations=stations, tolerance=timedelta(minutes=15), verbose=False) + +# %% +# Plot ISD Station Locations +# -------------------------- +# Visualise the ISD stations that will provide observations for assimilation. + +# %% +import cartopy +import cartopy.crs as ccrs +import matplotlib.pyplot as plt + +# Fetch a sample to get station locations +sample_df = isd(init_time, ["t2m", "u10m", "v10m"]) +station_lats = sample_df["lat"].values +station_lons = sample_df["lon"].values + +plt.close("all") +fig, ax = plt.subplots(subplot_kw={"projection": ccrs.PlateCarree()}, figsize=(8, 6)) +ax.set_extent([-110, -85, 30, 47], crs=ccrs.PlateCarree()) +ax.add_feature( + cartopy.feature.STATES.with_scale("50m"), linewidth=0.5, edgecolor="black" +) +ax.add_feature(cartopy.feature.LAND, facecolor="lightyellow") +ax.gridlines(draw_labels=True, linewidth=0.3, alpha=0.5) +ax.scatter( + station_lons, + station_lats, + s=20, + marker="x", + transform=ccrs.PlateCarree(), + zorder=3, +) +ax.set_title("ISD Station Locations - Central United States") +plt.savefig("outputs/21_isd_stations.jpg", dpi=150, bbox_inches="tight") + +# %% +# Run Inference With Streaming Observations +# ------------------------------------------ +# At each forecast step, fetch NOAA ISD observations for the current valid time +# and send them to the model generator. The observations will be used in the SDA +# guidance term when sampling the diffusion model effectively steering the generated +# result to align with the stations data from the ISD data based. + +# %% +np.random.seed(42) +torch.manual_seed(42) +if torch.cuda.is_available(): + torch.cuda.manual_seed_all(42) + +obs_frames = [] +gen = model.create_generator(x) +x_state = next(gen) # Prime the generator, yields initial state + +for step in tqdm(range(nsteps), desc="Obs forecast"): + # Fetch observations for the next forecast step's valid time using model coords + x_coords = OrderedDict({d: x_state.coords[d].values for d in x_state.dims}) + oc = model.output_coords((x_coords,))[0] + valid_time = oc["time"] + oc["lead_time"] + obs_df = isd(valid_time, plot_vars) + logger.info(f"Running obs forecast step {step}, {len(obs_df)} obs") + x_state = gen.send(obs_df) # Advance one hour with observations + obs_frames.append(x_state.sel(variable=plot_vars).copy()) + +gen.close() +obs_da = xr.concat(obs_frames, dim="lead_time") + +# Save to Zarr +obs_np = obs_da.copy(data=obs_da.data.get()) +obs_np.to_dataset(name="prediction").to_zarr("outputs/21_with_obs.zarr", mode="w") + +# %% +# Post Processing +# --------------- +# Compare the two forecasts. The top row shows the baseline forecast (no +# observations), the middle row shows the assimilated forecast with observation +# station locations overlaid as unfilled circles, and the bottom row shows the +# difference (assimilated minus baseline). + +# %% +plt.close("all") +variable = "u10m" + +# Load saved forecasts from Zarr stores +no_obs_ds = xr.open_zarr("outputs/21_no_obs.zarr") +obs_ds = xr.open_zarr("outputs/21_with_obs.zarr") + +no_obs_vals = no_obs_ds["prediction"].sel(variable=variable).values +obs_vals = obs_ds["prediction"].sel(variable=variable).values + +# Lambert Conformal projection matching HRRR +projection = ccrs.LambertConformal( + central_longitude=262.5, + central_latitude=38.5, + standard_parallels=(38.5, 38.5), + globe=ccrs.Globe(semimajor_axis=6371229, semiminor_axis=6371229), +) + +fig, axes = plt.subplots( + 3, + nsteps, + subplot_kw={"projection": projection}, + figsize=(4 * nsteps, 8), +) +fig.subplots_adjust(wspace=0.02, hspace=0.08, left=0.1, right=0.9) + +for step in range(nsteps): + lead_hr = step + 1 + no_obs_field = no_obs_vals[0, step] + obs_field = obs_vals[0, step] + diff_field = obs_field - no_obs_field + + vmin = -10 + vmax = 10 + # Row 0: No-obs forecast + ax = axes[0, step] + im0 = ax.pcolormesh( + model.lon, + model.lat, + no_obs_field, + transform=ccrs.PlateCarree(), + cmap="PRGn", + vmin=vmin, + vmax=vmax, + ) + ax.add_feature( + cartopy.feature.STATES.with_scale("50m"), + linewidth=0.5, + edgecolor="black", + zorder=2, + ) + ax.set_title(f"+{lead_hr}h") + + # Row 1: With-obs forecast + station locations + ax = axes[1, step] + im1 = ax.pcolormesh( + model.lon, + model.lat, + obs_field, + transform=ccrs.PlateCarree(), + cmap="PRGn", + vmin=vmin, + vmax=vmax, + ) + ax.scatter( + station_lons, + station_lats, + s=8, + facecolors="none", + edgecolors="black", + linewidths=0.8, + transform=ccrs.PlateCarree(), + zorder=3, + label="Stations", + ) + ax.add_feature( + cartopy.feature.STATES.with_scale("50m"), + linewidth=0.5, + edgecolor="black", + zorder=2, + ) + + # Row 2: Difference (assimilated - baseline) + ax = axes[2, step] + im2 = ax.pcolormesh( + model.lon, + model.lat, + diff_field, + transform=ccrs.PlateCarree(), + cmap="RdBu_r", + vmin=-3, + vmax=3, + ) + ax.add_feature( + cartopy.feature.STATES.with_scale("50m"), + linewidth=0.5, + edgecolor="black", + zorder=2, + ) + +axes[0, 0].text( + -0.07, + 0.5, + "No Obs", + va="bottom", + ha="center", + rotation="vertical", + rotation_mode="anchor", + fontsize=12, + transform=axes[0, 0].transAxes, +) +axes[1, 0].text( + -0.07, + 0.5, + "Obs", + va="bottom", + ha="center", + rotation="vertical", + rotation_mode="anchor", + fontsize=12, + transform=axes[1, 0].transAxes, +) +axes[2, 0].text( + -0.07, + 0.5, + "Difference", + va="bottom", + ha="center", + rotation="vertical", + rotation_mode="anchor", + fontsize=12, + transform=axes[2, 0].transAxes, +) + +# Add colour bars +plt.colorbar(im0, ax=axes[0, -1], shrink=0.6, label=f"{variable} (m/s)") +plt.colorbar(im1, ax=axes[1, -1], shrink=0.6, label=f"{variable} (m/s)") +plt.colorbar(im2, ax=axes[2, -1], shrink=0.6, label=f"{variable} (m/s)") + +plt.tight_layout() +plt.savefig("outputs/21_stormcast_sda_comparison.jpg", dpi=150) + +# %% +# Ground Truth Comparison +# ----------------------- +# Fetch HRRR analysis (ground truth) at each valid forecast time and compute +# the absolute error of both the no-obs and obs forecasts. This shows whether +# assimilation improves accuracy relative to the actual analysis. + +# %% +truth = fetch_data( + hrrr, + time=init_time, + variable=np.array(plot_vars), + lead_time=np.array([np.timedelta64(h + 1, "h") for h in range(nsteps)]), + device="cpu", + legacy=False, +) +ic["variable"] = np.array(plot_vars) + +truth = map_coords_xr(truth, {"hrrr_y": ic["hrrr_y"], "hrrr_x": ic["hrrr_x"]}) +truth_vals = truth.sel(variable=variable).values # [nsteps, hrrr_y, hrrr_x] +no_obs_vals = no_obs_ds["prediction"].sel(variable=variable).values +obs_vals = obs_ds["prediction"].sel(variable=variable).values + +# Compute absolute errors against ground truth +no_obs_err = np.abs(no_obs_vals[0] - truth_vals[0]) +obs_err = np.abs(obs_vals[0] - truth_vals[0]) + +# %% +# Plot absolute errors between the StormCast predictions and HRRR analysis ground truth. +# In later time-steps it is clear that StormCast with SDA sampling using ISD station +# observations has improved accuracy over the vanilla stormcast prediction. + +# %% +plt.close("all") +fig, axes = plt.subplots( + 2, + nsteps, + subplot_kw={"projection": projection}, + figsize=(4 * nsteps, 6), +) +fig.subplots_adjust(wspace=0.02, hspace=0.08, left=0.1, right=0.9) + +err_max = 5 +for step in range(nsteps): + lead_hr = step + 1 + + # Row 0: No-obs absolute error + ax = axes[0, step] + im0 = ax.pcolormesh( + model.lon, + model.lat, + no_obs_err[step], + transform=ccrs.PlateCarree(), + cmap="viridis", + vmin=0, + vmax=err_max, + ) + ax.add_feature( + cartopy.feature.STATES.with_scale("50m"), + linewidth=0.5, + edgecolor="grey", + zorder=2, + ) + ax.set_title(f"+{lead_hr}h") + + # Row 1: Obs absolute error + ax = axes[1, step] + im1 = ax.pcolormesh( + model.lon, + model.lat, + obs_err[step], + transform=ccrs.PlateCarree(), + cmap="viridis", + vmin=0, + vmax=err_max, + ) + ax.add_feature( + cartopy.feature.STATES.with_scale("50m"), + linewidth=0.5, + edgecolor="grey", + zorder=2, + ) + +axes[0, 0].text( + -0.07, + 0.5, + "|No Obs - Truth|", + va="bottom", + ha="center", + rotation="vertical", + rotation_mode="anchor", + fontsize=12, + transform=axes[0, 0].transAxes, +) +axes[1, 0].text( + -0.07, + 0.5, + "|Obs - Truth|", + va="bottom", + ha="center", + rotation="vertical", + rotation_mode="anchor", + fontsize=12, + transform=axes[1, 0].transAxes, +) + +plt.colorbar(im0, ax=axes[0, -1], shrink=0.6, label=f"|Δ{variable}| (m/s)") +plt.colorbar(im1, ax=axes[1, -1], shrink=0.6, label=f"|Δ{variable}| (m/s)") +plt.tight_layout() +plt.savefig("outputs/21_stormcast_sda_gt_comparison.jpg") diff --git a/pyproject.toml b/pyproject.toml index e9d82c3fd..40e8d7db1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -60,7 +60,8 @@ Changelog = "https://github.com/NVIDIA/earth2studio/blob/main/CHANGELOG.md" data = [ "cdsapi>=0.7.5", "cfgrib >= 0.9.10.3", - "eccodes>=2.38.0", + "eccodes>=2.39.2", + "eccodeslib>=2.39.2", "ecmwf-opendata>=0.3.3", "intake-esgf>=2025.9.26", "pandas<3.0", # https://github.com/esgf2-us/intake-esgf/issues/167 @@ -79,8 +80,7 @@ perturbation = [ "scipy>=1.15.2", ] statistics = [ - "nvidia-physicsnemo>=1.0.1,<2.0", - "pytz", # Remove on physicsnemo 2.0 + "nvidia-physicsnemo>=1.0.1", ] utils = [ "scipy>=1.15.2", @@ -93,16 +93,19 @@ serve = [ "pydantic>=2.0.0", # Redis dependencies "redis>=5.0.0", + "types-redis", "hiredis>=2.0.0", "rq>=1.15.0", # Metrics "prometheus_client>=0.17.0", # Additional utilities - "python-multipart>=0.0.6", - "python-dotenv>=1.0.0", "aiofiles>=23.0.0", "httpx>=0.25.0", "hydra-core>=1.3.0", + "python-dotenv>=1.0.0", + "python-multipart>=0.0.6", + "requests>=2.25.0", + "urllib3>=1.26.0", # Object storage related "cryptography>=41.0.0", "multi-storage-client>=0.44.0", @@ -112,7 +115,6 @@ serve = [ # PX Models ace2 = [ "fme", - "h5py<=3.14.0", "pandas>=2.3.2", "scipy>=1.15.2", ] @@ -133,27 +135,23 @@ atlas = [ "timm", "torch-harmonics", "einops", - "nvidia-physicsnemo>=1.3.0,<2.0", - "pytz", # Remove on physicsnemo 2.0 + "nvidia-physicsnemo>=1.3.0", ] aurora = [ "microsoft-aurora>=1.6.0", ] dlesym = [ - "nvidia-physicsnemo>=1.0.1,<2.0", + "nvidia-physicsnemo>=1.0.1", "earth2grid", "omegaconf>=2.3.0", "hydra-core>=1.3.2", - "pytz", # Remove on physicsnemo 2.0 ] dlwp = [ - "nvidia-physicsnemo>=1.0.1,<2.0", + "nvidia-physicsnemo>=1.0.1", "importlib_metadata", - "pytz", # Remove on physicsnemo 2.0 ] fcn = [ - "nvidia-physicsnemo>=1.0.1,<2.0", - "pytz", # Remove on physicsnemo 2.0 + "nvidia-physicsnemo>=1.0.1", ] fcn3 = [ "makani", @@ -161,7 +159,6 @@ fcn3 = [ "scipy>=1.10.0", "torch-harmonics>=0.8.0", "moviepy", - "pytz", # Remove on physicsnemo 2.0 ] fengwu = [ "onnx", @@ -181,8 +178,7 @@ graphcast = [ "dm-tree>=0.1.9", ] interp-modafno = [ - "nvidia-physicsnemo>=1.0.1,<2.0", - "pytz", # Remove on physicsnemo 2.0 + "nvidia-physicsnemo>=2.0", ] pangu = [ "onnx", @@ -199,19 +195,17 @@ sfno = [ ] stormcast = [ "einops>=0.8.1", - "nvidia-physicsnemo>=1.0.1,<2.0", + "nvidia-physicsnemo>=2.0", "nvtx>=0.2.11", "omegaconf>=2.3.0", "scipy>=1.15.2", "pyproj>=3.7.1", - "pytz", # Remove on physicsnemo 2.0 ] stormscope = [ "natten", - "nvidia-physicsnemo==1.3.0", + "nvidia-physicsnemo>=2.0", "nvtx>=0.2.11", "earth2studio[utils]", - "pytz", # Remove on physicsnemo 2.0 ] # DX Models cbottle = [ @@ -221,10 +215,9 @@ cbottle = [ climatenet = [] corrdiff = [ "einops>=0.8.1", - "nvidia-physicsnemo>=1.2.0,<2.0", + "nvidia-physicsnemo>=2.0", "nvtx>=0.2.11", "scipy>=1.15.2", - "pytz", # Remove on physicsnemo 2.0 ] cyclone = [ "cucim-cu12>=25.4.0", @@ -233,36 +226,55 @@ cyclone = [ ] derived = [] precip-afno = [ - "nvidia-physicsnemo>=1.0.1,<2.0", - "pytz", # Remove on physicsnemo 2.0 + "nvidia-physicsnemo>=1.0.1", ] precip-afno-v2 = [ - "nvidia-physicsnemo>=1.0.1,<2.0", - "pytz", # Remove on physicsnemo 2.0 + "nvidia-physicsnemo>=1.0.1", ] solarradiation-afno = [ - "nvidia-physicsnemo>=1.0.1,<2.0", - "pytz", # Remove on physicsnemo 2.0 + "nvidia-physicsnemo>=1.0.1", ] windgust-afno = [ - "nvidia-physicsnemo>=1.0.1,<2.0", - "pytz", # Remove on physicsnemo 2.0 + "nvidia-physicsnemo>=1.0.1", ] # DA Models da-interp = [ "cupy-cuda12x<14.0.0", "cudf-cu12==26.2.*", ] +da-stormcast = [ + "earth2studio[stormcast]", + "cupy-cuda12x<14.0.0", + "cudf-cu12==26.2.*", +] # All, must not have conflicts all = [ "earth2studio[data,perturbation,statistics,utils]", - "earth2studio[ace2,aifs,aifsens,atlas,aurora,dlesym,dlwp,fcn,fcn3,fengwu,interp-modafno,pangu,sfno,stormcast,stormscope,graphcast]", + "earth2studio[aifs,aifsens,atlas,aurora,dlesym,dlwp,fcn,fcn3,fengwu,interp-modafno,pangu,stormcast,sfno,stormscope,graphcast]", "earth2studio[cbottle,climatenet,corrdiff,precip-afno,cyclone,precip-afno-v2,solarradiation-afno,windgust-afno]", + "earth2studio[da-interp,da-stormcast]", ] # ==== UV configuration ==== [tool.uv] -conflicts = [] +conflicts = [ + [ + { extra = "ace2" }, + { extra = "atlas" }, + ], + [ + { extra = "ace2" }, + { extra = "fcn3" }, + ], + [ + { extra = "ace2" }, + { extra = "perturbation" }, + ], + [ + { extra = "ace2" }, + { extra = "sfno" }, + ] +] default-groups = ["dev", "build"] # Needed for some packages that build with PEP 518 no-build-isolation-package = ["earth2grid", "flash-attn", "natten", "torch-harmonics"] @@ -275,12 +287,19 @@ natten = ["setuptools", "cmake", "torch"] [tool.uv.sources] cfgrib = { git = "https://github.com/NickGeneva/cfgrib.git", rev = "6a9af3173d7050b5fa5d221755f97e6ecb8c3433" } # https://github.com/ecmwf/cfgrib/issues/433 -cbottle = { git = "https://github.com/NVlabs/cBottle.git", rev = "1d4435abe730d6b966e983633b466b345d60ac78" } +cbottle = { git = "https://github.com/NVlabs/cBottle.git", rev = "8b8b358466e6b2f50d1779009790002ceb596e72" } earth2grid = { git = "https://github.com/NVlabs/earth2grid.git", rev = "11dcf1b0787a7eb6a8497a3a5a5e1fdcc31232d3" } -makani = { git = "https://github.com/NVIDIA/makani.git", rev = "fd1a62b9f27aebbc793f0cbafd838a3811de43fd"} +makani = { git = "https://github.com/NVIDIA/makani.git", rev = "b38fcb2799d7dbc146fa60459f3f9823394a8bf1"} graphcast = { git = "https://github.com/google-deepmind/graphcast.git", rev = "7077d40a36db6541e3ed72ccaed1c0d202fa6014" } pytest-testmon = { git = "https://github.com/NickGeneva/pytest-testmon.git", rev = "48cd5ed1b67bf2f2bd9f63335389f262db472806" } fme = { git = "https://github.com/ai2cm/ace.git", rev = "e211cad3e1a5cff0fa84e8d2f0ee67042eff3d4d" } +# Specific source for each of the current torch-harmonics models, avoiding ace2 conflicts until they update torch-harmonics +torch-harmonics = [ + { git = "https://github.com/NVIDIA/torch-harmonics.git", rev = "a632ca748a12bd9f74dbc1e00653317810991f74", extra = "perturbation"}, + { git = "https://github.com/NVIDIA/torch-harmonics.git", rev = "a632ca748a12bd9f74dbc1e00653317810991f74", extra = "atlas"}, + { git = "https://github.com/NVIDIA/torch-harmonics.git", rev = "a632ca748a12bd9f74dbc1e00653317810991f74", extra = "fcn3"}, + { git = "https://github.com/NVIDIA/torch-harmonics.git", rev = "a632ca748a12bd9f74dbc1e00653317810991f74", extra = "sfno"}, +] [[tool.uv.index]] name = "pytorch-cpu" @@ -314,6 +333,7 @@ dev = [ "pytest-skip-slow>=0.0.5", "pytest-testmon>=2.1.3", "pyyaml>=6.0", + "types-redis", "types-requests", "ruff", "pytest-asyncio>=0.26.0", @@ -332,7 +352,7 @@ docs = [ "sphinx-togglebutton>=0.3.0", "myst-parser>=0.18.0", "sphinx-favicon>=1.0.1", - "pydata-sphinx-theme==0.16.1" + "nvidia-sphinx-theme" ] [tool.hatch.version] @@ -362,10 +382,9 @@ exclude = [] "docs/*.py" = ["F401"] "examples/*.py" = ["E402"] "recipes/**/*_notebook.py" = ["E402"] - # Ignore `S101` (assertions) in all `test` files. "test/*.py" = ["S101"] -"serve/test/*.py" = ["S101"] +"serve/server/test/*.py" = ["S101"] # ==== Pytest configuration ==== [tool.pytest.ini_options] diff --git a/recipes/hens/cfg/storm_bernd.yaml b/recipes/hens/cfg/storm_bernd.yaml index 678103470..22dc67eaf 100644 --- a/recipes/hens/cfg/storm_bernd.yaml +++ b/recipes/hens/cfg/storm_bernd.yaml @@ -29,7 +29,7 @@ data_source: _target_: earth2studio.data.GFS # data source class file_output: - path: '/output/' # directory to which outfiles are written + path: '/outputs' # directory to which outfiles are written output_vars: ['t2m','u10m','r500','tp'] thread_io: False # write out in seperate thread (needs further testing) format: # io backend class diff --git a/recipes/hens/src/hens_ensemble.py b/recipes/hens/src/hens_ensemble.py index 021ca2766..d11e0622a 100644 --- a/recipes/hens/src/hens_ensemble.py +++ b/recipes/hens/src/hens_ensemble.py @@ -33,12 +33,11 @@ from earth2studio.models.dx import DiagnosticModel from earth2studio.models.px import PrognosticModel from earth2studio.perturbation import Perturbation -from earth2studio.utils.coords import CoordSystem, map_coords, split_coords +from earth2studio.utils.coords import CoordSystem, cat_coords, map_coords, split_coords from earth2studio.utils.time import to_time_array from .hens_utilities import ( TCTracking, - cat_coords, get_batchid_from_ensid, save_corrdiff_output, ) @@ -389,8 +388,14 @@ def __call__(self) -> dict[str, IOBackend]: yy, codia = map_coords(xx, coords, self.dx_ic_dict[dx_name]) yy, codib = dx_model(yy, codia) - # concatenate diagnostic variable to forecast vars - xx, coords = cat_coords(xx, coords, yy, codib, "variable") + # map lat/lon of diagnostic model to forecast model (often there is difference in lat) + _codib = OrderedDict( + {_dim: coords[_dim] for _dim in ["lat", "lon"]} + ) + yy, codib = map_coords(yy, codib, _codib) + + # concatenate tensors along variable dimension + xx, coords = cat_coords((xx, yy), (coords, codib), "variable") # --- CorrDiff models (run after each step, separately) --- # For each CorrDiff model, run the downscaling, collect outputs and coordinates, diff --git a/recipes/hens/src/hens_utilities.py b/recipes/hens/src/hens_utilities.py index 8e5a108eb..a3e26d6a8 100644 --- a/recipes/hens/src/hens_utilities.py +++ b/recipes/hens/src/hens_utilities.py @@ -34,7 +34,6 @@ from earth2studio.models.dx import CorrDiff from earth2studio.models.px import PrognosticModel from earth2studio.perturbation import Perturbation -from earth2studio.utils.coords import CoordSystem, map_coords from earth2studio.utils.time import to_time_array from .hens_utilities_reproduce import ( @@ -1024,55 +1023,6 @@ def get_batchid_from_ensid( return batch_id -def cat_coords( - xx: torch.Tensor, - cox: CoordSystem, - yy: torch.Tensor, - coy: CoordSystem, - dim: str = "variable", -) -> tuple[torch.Tensor, CoordSystem]: - """ - concatenate data along coordinate dimension. - - Parameters - ---------- - xx : torch.Tensor - First input tensor which to concatenate - cox : CoordSystem - Ordered dict representing coordinate system that describes xx - yy : torch.Tensor - Second input tensor which to concatenate - coy : CoordSystem - Ordered dict representing coordinate system that describes yy - dim : str - name of dimension along which to concatenate - - Returns - ------- - tuple[torch.Tensor, CoordSystem] - Tuple containing output tensor and coordinate OrderedDict from - concatenated data. - """ - - if dim not in cox: - raise ValueError(f"dim {dim} is not in coords: {list(cox)}.") - if dim not in coy: - raise ValueError(f"dim {dim} is not in coords: {list(coy)}.") - - # fix difference in latitude - _cox = cox.copy() - _cox["lat"] = coy["lat"] - xx, cox = map_coords(xx, cox, _cox) - - coords = cox.copy() - dim_index = list(coords).index(dim) - - zz = torch.cat((xx, yy), dim=dim_index) - coords[dim] = np.append(cox[dim], coy[dim]) - - return zz, coords - - def save_corrdiff_output(cd_output_dict: dict, save_path: str) -> None: """ Save CorrDiff model output to a NetCDF file as a Dataset with one variable per CorrDiff output. diff --git a/recipes/s2s/src/s2s_ensemble.py b/recipes/s2s/src/s2s_ensemble.py index 7d2beaed7..9dcb70ab4 100644 --- a/recipes/s2s/src/s2s_ensemble.py +++ b/recipes/s2s/src/s2s_ensemble.py @@ -18,6 +18,7 @@ from concurrent.futures import Future, ThreadPoolExecutor from datetime import datetime from math import ceil +from typing import cast import numpy as np import torch @@ -29,12 +30,11 @@ from earth2studio.models.dx import DiagnosticModel from earth2studio.models.px import PrognosticModel from earth2studio.perturbation import Perturbation -from earth2studio.utils.coords import CoordSystem, map_coords, split_coords +from earth2studio.utils.coords import CoordSystem, cat_coords, map_coords, split_coords from earth2studio.utils.time import to_time_array from .s2s_utilities import ( calculate_torch_seed, - cat_coords, get_batchid_from_ensid, run_with_rank_ordered_execution, ) @@ -184,12 +184,16 @@ def fetch_ics( IC times """ self.time = to_time_array(time) - self.x0, self.coords0 = fetch_data( - source=data, - time=time, - variable=self.prognostic_ic["variable"], - lead_time=self.prognostic_ic["lead_time"], - device="cpu", + self.x0, self.coords0 = cast( + tuple[torch.Tensor, CoordSystem], + fetch_data( + source=data, + time=time, + variable=self.prognostic_ic["variable"], + lead_time=self.prognostic_ic["lead_time"], + device="cpu", + legacy=True, + ), ) logger.success(f"Fetched data from {data.__class__.__name__}") @@ -329,7 +333,7 @@ def write(self, xx_sub: torch.Tensor, coords_sub: CoordSystem) -> None: for k in self.io_dict.keys(): if self.writer_executor is not None: future = self.writer_executor.submit( - self.io_dict[k].write, *split_coords(xx_sub, coords_sub) + self.io_dict[k].write, *split_coords(xx_sub, coords_sub) # type: ignore[arg-type] ) self.writer_threads.append(future) else: @@ -371,7 +375,7 @@ def __call__(self) -> dict[str, ZarrBackend]: yy, codib = dx_model(yy, codia) # concatenate diagnostic variable to forecast vars - xx, coords = cat_coords(xx, coords, yy, codib, "variable") + xx, coords = cat_coords((xx, yy), (coords, codib), "variable") # pass output variables to io backend for k in self.io_dict.keys(): diff --git a/recipes/s2s/src/s2s_utilities.py b/recipes/s2s/src/s2s_utilities.py index 227a5e688..c27655c78 100644 --- a/recipes/s2s/src/s2s_utilities.py +++ b/recipes/s2s/src/s2s_utilities.py @@ -38,7 +38,7 @@ from earth2studio.models.auto import Package from earth2studio.models.px import PrognosticModel from earth2studio.perturbation import Perturbation -from earth2studio.utils.coords import CoordSystem, handshake_coords, map_coords +from earth2studio.utils.coords import handshake_coords from earth2studio.utils.time import to_time_array @@ -943,55 +943,6 @@ def get_batchid_from_ensid( return batch_id -def cat_coords( - xx: torch.Tensor, - cox: CoordSystem, - yy: torch.Tensor, - coy: CoordSystem, - dim: str = "variable", -) -> tuple[torch.Tensor, CoordSystem]: - """ - concatenate data along coordinate dimension. - - Parameters - ---------- - xx : torch.Tensor - First input tensor which to concatenate - cox : CoordSystem - Ordered dict representing coordinate system that describes xx - yy : torch.Tensor - Second input tensor which to concatenate - coy : CoordSystem - Ordered dict representing coordinate system that describes yy - dim : str - name of dimension along which to concatenate - - Returns - ------- - tuple[torch.Tensor, CoordSystem] - Tuple containing output tensor and coordinate OrderedDict from - concatenated data. - """ - - if dim not in cox: - raise ValueError(f"dim {dim} is not in coords: {list(cox)}.") - if dim not in coy: - raise ValueError(f"dim {dim} is not in coords: {list(coy)}.") - - # fix difference in latitude - _cox = cox.copy() - _cox["lat"] = coy["lat"] - xx, cox = map_coords(xx, cox, _cox) - - coords = cox.copy() - dim_index = list(coords).index(dim) - - zz = torch.cat((xx, yy), dim=dim_index) - coords[dim] = np.append(cox[dim], coy[dim]) - - return zz, coords - - def calculate_torch_seed(s: str) -> int: """Calculates torch seed based on a given string. String s is used as input to sha256 hash algorithm. diff --git a/serve/Dockerfile b/serve/Dockerfile index 6c9cde587..d0d368855 100644 --- a/serve/Dockerfile +++ b/serve/Dockerfile @@ -11,7 +11,6 @@ ENV EARTH2STUDIO_PACKAGE_TIMEOUT=1200 ENV FORCE_CUDA_EXTENSION=1 ENV PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True -ARG MAKANI_HASH=28f38e3e929ed1303476518552c64673bbd6f722 ARG E2G_HASH=11dcf1b0787a7eb6a8497a3a5a5e1fdcc31232d3 ARG E2S_HASH=8ca8771c6be6ca051e082d41b99378fa14b58d9f @@ -19,21 +18,31 @@ WORKDIR /workspace COPY --from=ghcr.io/astral-sh/uv:0.7.3 /uv /uvx /bin/ RUN uv pip install --system --break-system-packages --no-build-isolation torch-harmonics==0.8.0 -RUN uv pip install --system --break-system-packages "makani @ git+https://github.com/NVIDIA/makani.git@${MAKANI_HASH}" RUN uv pip install --system --break-system-packages --no-build-isolation "earth2grid @ git+https://github.com/NVlabs/earth2grid@${E2G_HASH}" RUN uv pip install --system --break-system-packages natten==0.21.5+torch2100cu130 -f https://whl.natten.org -RUN uv pip install --system --break-system-packages "earth2studio[dlwp,dlesym,pangu,sfno,stormcast,fcn3] @ git+https://github.com/NVIDIA/earth2studio.git@${E2S_HASH}" -RUN uv pip install --system --break-system-packages "earth2studio[cbottle,corrdiff,cyclone] @ git+https://github.com/NVIDIA/earth2studio.git@${E2S_HASH}" -RUN uv pip install --system --break-system-packages "earth2studio[data,perturbation,statistics] @ git+https://github.com/NVIDIA/earth2studio.git@${E2S_HASH}" RUN uv pip install --system --break-system-packages cartopy xskillscore matplotlib +# Install the requirements for stormcast. +RUN pip uninstall -y torch-harmonics && \ + FORCE_CUDA_EXTENSION=1 uv pip install --system --break-system-packages --no-build-isolation torch-harmonics==0.8.0 + # Install the requirements for the inference server. COPY serve /workspace/earth2studio-project/serve -RUN cd / && mkdir /workspace/earth2studio-project/examples && ln -s /outputs /workspace/earth2studio-project/examples/outputs +COPY examples /workspace/earth2studio-project/examples +RUN ln -s /outputs /workspace/earth2studio-project/examples/outputs +# Config and scripts live under serve/server/ after COPY serve +ENV SCRIPT_DIR=/workspace/earth2studio-project/serve/server/scripts +ENV CONFIG_DIR=/workspace/earth2studio-project/serve/server/conf +ENV WORKFLOW_DIR=/workspace/earth2studio-project/serve/server/example_workflows + +# Install local earth2studio from repo, then various extras and serve requirements. +# Copy project root files needed for pip install (pyproject.toml is at repo root, not inside earth2studio). +COPY pyproject.toml README.md /workspace/earth2studio-project/ +COPY earth2studio /workspace/earth2studio-project/earth2studio RUN apt-get update && apt-get install -y redis-server && \ cd /workspace/earth2studio-project && \ - uv pip install --system --break-system-packages -r serve/inferenceserver/requirements.txt - -CMD ["/workspace/earth2studio-project/serve/inferenceserver/scripts/startup.sh"] + uv pip install --system --break-system-packages ".[dlwp,dlesym,pangu,sfno,stormcast,fcn3,serve,cbottle,corrdiff,cyclone,data,perturbation,statistics]" && \ + uv pip install --system --break-system-packages -r serve/server/requirements.txt && \ + rm -rf /workspace/earth2studio-project/earth2studio /workspace/earth2studio-project/pyproject.toml /workspace/earth2studio-project/README.md -#RUN python -c "import earth2studio; print(f'Earth2Studio version: {earth2studio.__version__}')" +CMD ["/workspace/earth2studio-project/serve/server/scripts/startup.sh"] diff --git a/serve/inferenceserver/api_server/__init__.py b/serve/client/Makefile similarity index 65% rename from serve/inferenceserver/api_server/__init__.py rename to serve/client/Makefile index f07be226e..99b518462 100644 --- a/serve/inferenceserver/api_server/__init__.py +++ b/serve/client/Makefile @@ -14,14 +14,16 @@ # See the License for the specific language governing permissions and # limitations under the License. -""" -Earth2Studio API Server Package +.PHONY: deps integration_test run_deterministic run_stormcast -This package contains the main API server components including: -- main: FastAPI application and REST endpoints -- workflow: Workflow framework and registry -- worker: RQ worker functions for processing jobs -- cpu_worker: CPU-intensive worker functions -""" +deps: + uv add -r requirements.txt -__all__ = ["main", "workflow", "worker", "cpu_worker", "config", "object_storage"] +# integration_test: +# TODO: Add integration tests here. + +run_deterministic: + python examples/basic_forecast.py + +run_stormcast: + python examples/downscaled_forecast.py diff --git a/serve/client/README.md b/serve/client/README.md new file mode 100644 index 000000000..5fff2298d --- /dev/null +++ b/serve/client/README.md @@ -0,0 +1,442 @@ +# Earth2Studio Python Client SDK + +A Python client library for the Earth2Studio REST API. + +The client SDK provides two interfaces to remotely access the Earth2Studio API server: + +1. **`earth2studio.serve.client.e2client.RemoteEarth2Workflow`** - High-level interface for seamless + integration with Earth2Studio and Xarray. Recommended for most use cases. +2. **`earth2studio.serve.client.client.Earth2StudioClient`** - Low-level interface for direct API access + and result file management. Useful for custom workflows and integrations. + +Please refer to the server's `README_workflows.md` and `README_earth2workflows.md` for +information about the server-side interface. + +## Quick Start + +To use a remote workflow, first initialize the `RemoteEarth2Workflow` object and then +call it using the workflow parameters. Here, we access the `DeterministicEarth2Workflow` +included in the server examples and get the results as an Earth2Studio data source. + +```python +from datetime import datetime, timedelta +import os +from earth2studio.serve.client.e2client import RemoteEarth2Workflow + +# Create client (configurable via environment variable) +api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") +workflow = RemoteEarth2Workflow( + api_url, + workflow_name="deterministic_earth2_workflow", + device='cuda' # use 'cpu' if you don't have a GPU on the client machine +) + +data_source = workflow(start_time=[datetime(2025, 8, 21, 6)]).as_data_source() +# get temperature forecast 24 h after start time +t2m = data_source(datetime(2025, 8, 22, 6), "t2m") +t2m_np = t2m.values # get the results as a NumPy array +``` + +Data access is lazy if the workflow produces Zarr files: In the above example, only the +temperature will be downloaded and the actual download happens on the last line of code. + +## Advanced Usage + +In the examples below, we initialize `workflow` as in the Quick Start above, +unless otherwise mentioned. + +### Access the result dataset directly + +You can directly access the underlying Xarray Dataset: + +```python +ds = workflow(start_time=[datetime(2025, 8, 21, 6)]).as_dataset() +# same result as getting data from `data_source` in the Quick Start example +t2m = ds["t2m"].sel(lead_time=np.timedelta64(timedelta(hours=24))) +t2m_np = t2m.values # NumPy array +``` + +### Iterate over results + +Similar to Earth2Studio model iterators, we can iterate over the results as +`(Tensor, CoordSystem)` tuples: + +```python +model = workflow(start_time=[datetime(2025, 8, 21, 6)]).as_model() +for (x, coords) in model.create_iterator(): + # computes the mean on GPU if we used `device='cuda'` when creating the Workflow + print(x.mean().cpu().numpy()) +``` + +This can be used to provide an input to a local workflow that expects a prognostic +model. The example `diagnostic_analysis.py` shows how to use this to run a local +diagnostic. + +### Save reference to remote results + +You can create a `RemoteEarth2WorkflowResult` manually in order to access the results later. +This allows you to do other work and even close Python while waiting for results to complete. + +```python +result = workflow(start_time=[datetime(2025, 8, 21, 6)]) +print(result.execution_id) # write down the execution id +exec_1766159252_5f779460 + +# *** After restarting Python *** + +from datetime import datetime +import os +from earth2studio.serve.client.e2client import RemoteEarth2Workflow, RemoteEarth2WorkflowResult + +# re-initialize workflow +api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") +workflow = RemoteEarth2Workflow( + api_url, + workflow_name="deterministic_earth2_workflow", + device='cuda' # use 'cpu' if you don't have a GPU on the client machine +) + +# manually create result object with the execution_id from earlier +execution_id = "exec_1766159252_5f779460" +result = RemoteEarth2WorkflowResult(workflow, execution_id) + +# now we can access the results as before +data_source = result.as_data_source() # will block until results are available +t2m = data_source(datetime(2025, 8, 22, 6), "t2m") +``` + +### Use remote workflow to condition a local model + +Use the results as a low-resolution conditioning for a StormCast model running locally: + +```python +from earth2studio.data import HRRR +from earth2studio.models.px import StormCast +from earth2studio.io import NetCDF4Backend + +fcn3_workflow = RemoteEarth2Workflow( + api_url, + workflow_name="stormcast_fcn3_workflow", + device='cuda' # use 'cpu' if you don't have a GPU on the client machine +) + +hrrr_ic = HRRR() +stormcast = StormCast.from_pretrained() +io = NetCDF4Backend("stormcast_result.nc") +conditioning_source = fcn3_workflow( + start_time=[datetime(2025, 8, 21, 6)], + num_hours=num_steps, + run_stormcast=False +).as_data_source() +stormcast.conditioning_data_source = conditioning_source +num_hours=5 + +run.deterministic( + [datetime(2025, 8, 21, 6)], + num_hours, + stormcast, + hrrr_ic, + io, + device='cuda', +) +``` + +### Object Storage (S3) Support + +The client SDK seamlessly supports both local server storage and object storage +(S3/CloudFront). When the server is configured to use object storage, all the examples +in this README work without any code changes. The client automatically detects the +storage type from the server response and handles downloads appropriately: + +- **Server storage**: Files are downloaded directly from the inference server +- **S3 storage**: Files are downloaded from S3 using pre-signed CloudFront URLs + +This means you can use the same code regardless of how the server is configured: + +```python +# Same whether server uses local or S3 storage +result = workflow(start_time=[datetime(2025, 8, 21, 6)]) +ds = result.as_dataset() # Fetches from S3 if configured +``` + +### Download result files directly + +`Earth2StudioClient` gives lower-level access than `RemoteEarth2Workflow`. Use it to +download individual result files programmatically. + +Initialize the client: + +```python +import os +from datetime import datetime +from earth2studio.serve.client.client import Earth2StudioClient, InferenceRequest + +# Create client (configurable via environment variable) +api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") +client = Earth2StudioClient(api_url, workflow_name="deterministic_earth2_workflow") + +# Check API health +health = client.health_check() +print(f"API Status: {health.status}") +``` + +Now, submit a workflow and download result files directly: + +```python +parameters = {"start_time": [datetime(2025, 8, 21, 6)]} +request = InferenceRequest(parameters=parameters) +request_result = client.run_inference_sync(request) + +# Download individual output files (works with both local and S3 storage) +for file in request_result.output_files[:5]: # limit to first 5 files + print(f"Downloading: {file.path}") + content = client.download_result(request_result, file.path) + print(f"Downloaded {file.path}: {len(content.getvalue())} bytes") + + # Optionally save to disk + # with open(file.path.split("/")[-1], "wb") as f: + # f.write(content.getvalue()) +``` + +To get the URL of a result file for use with external tools like `wget` (server storage only): + +```python +from urllib.parse import urljoin + +result_root = client.result_root_path(request_result) +result_path = request_result.result_paths()[0] + +result_url = urljoin(api_url, f"{result_root}{result_path}") +print(result_url) +# e.g. http://localhost:8000/v1/infer/.../results/.../results.zarr +``` + +### Asynchronous usage of `Earth2StudioClient` + +For long-running forecasts, you can submit requests and check status separately: + +```python +import time +from earth2studio.serve.client.models import RequestStatus + +# Submit request +response = client.submit_inference_request(request) +execution_id = response.execution_id +print(f"Submitted request: {execution_id}") + +# Check status periodically +while True: + status = client.get_request_status(execution_id) + print(f"Status: {status.status.value}, Step: {status.progress.current_step}") + + if status.status in [RequestStatus.COMPLETED, RequestStatus.FAILED]: + break + + time.sleep(10) + +# Get results when completed +if status.status == RequestStatus.COMPLETED: + request_result = client.get_request_results(execution_id) + print(f"Forecast completed with {len(request_result.output_files)} output files") + +# Now we can use ``request_result`` as in the above example +``` + +### Authentication + +If your server requires authentication, you can pass a Bearer token to the client: + +```python +# With authentication token +client = Earth2StudioClient( + base_url="http://localhost:8000", + workflow_name="deterministic_earth2_workflow", + token="your-api-token" # Bearer token for authenticated requests +) + +workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="deterministic_earth2_workflow", + token="your-api-token" +) +``` + +The token is sent as a Bearer token in the `Authorization` header with all API requests. + +### Custom HTTP Settings + +You can modify the settings for HTTP access. The HTTP-related parameters are +identical for `Earth2StudioClient` and `RemoteEarth2Workflow`. + +```python +client = Earth2StudioClient( + base_url="http://localhost:8000", + timeout=60.0, # Request timeout + max_retries=5, # Maximum retries + retry_backoff_factor=1.0, # Retry backoff factor + token="your-api-token" # Optional authentication token +) + +workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + timeout=60.0, # Request timeout + max_retries=5, # Maximum retries + retry_backoff_factor=1.0, # Retry backoff factor + token="your-api-token" # Optional authentication token +) +``` + +## API Reference + +### RemoteEarth2Workflow + +High-level client for Earth2Studio-compatible remote inference workflows. + +#### RemoteEarth2Workflow constructor + +```python +RemoteEarth2Workflow( + base_url: str, + workflow_name: str, + device: str | torch.device | None = None, + xr_args: dict[str, Any] | None = None, + **client_kwargs +) +``` + +**Args:** + +- `base_url`: URL of the Earth2Studio API server +- `workflow_name`: Name of the workflow to execute on the server +- `device`: Device for tensor operations (e.g., "cuda", "cpu"). +- `xr_args`: Additional keyword arguments passed to xarray.open_dataset/xarray.open_zarr +- `**client_kwargs`: Additional arguments passed to Earth2StudioClient + +#### RemoteEarth2Workflow methods + +- `__call__(**kwargs)` → `RemoteEarth2WorkflowResult`: Submit inference with parameters +- `to(device)` → `RemoteEarth2Workflow`: Move workflow to specified device + +### RemoteEarth2WorkflowResult + +Result object for accessing remote inference outputs. + +#### Attributes + +- `execution_id`: Unique identifier for the inference execution +- `workflow`: Parent RemoteEarth2Workflow instance + +#### RemoteEarth2WorkflowResult methods + +- `as_dataset()` → `xr.Dataset`: Wait for completion and return result as xarray Dataset +- `as_data_source()` → `InferenceOutputSource`: Wait for completion and return as Earth2Studio data source +- `as_model(iter_coord="lead_time")` → `InferenceOutputModel`: Model iterable over time steps + +### Earth2StudioClient + +Low-level client class for direct API access and result file management. + +#### Earth2StudioClient constructor + +```python +Earth2StudioClient( + base_url: str = "http://localhost:8000", + workflow_name: str = "deterministic_earth2_workflow", + timeout: float = 30.0, + max_retries: int = 3, + retry_backoff_factor: float = 0.3, + token: str | None = None +) +``` + +**Args:** + +- `base_url`: URL of the Earth2Studio API server +- `workflow_name`: Name of the workflow to execute on the server +- `timeout`: Request timeout in seconds +- `max_retries`: Maximum number of retries for failed requests +- `retry_backoff_factor`: Backoff factor between retries +- `token`: Optional Bearer token for authenticated requests + +#### Earth2StudioClient methods + +- `health_check()` → `HealthStatus`: Check API health +- `submit_inference_request(request)` → `InferenceRequestResponse`: Submit request +- `get_request_status(request_id)` → `InferenceRequestStatus`: Get status +- `get_request_results(request_id, timeout=None)` → `InferenceRequestResults`: Get results +- `wait_for_completion(request_id, poll_interval=5.0, timeout=None)` → + `InferenceRequestResults`: Wait for completion +- `run_inference_sync(request, poll_interval=5.0, timeout=None)` → `InferenceRequestResults`: + Submit and wait for completion +- `result_root_path(result)` → `str`: Get root URL path for result files +- `download_result(result, path, timeout=None)` → `io.BytesIO`: Download a result file + +### Data Models + +- `InferenceRequest`: Inference request payload with workflow parameters +- `InferenceRequestResponse`: Response when submitting a request (contains execution_id) +- `InferenceRequestStatus`: Status information for an inference request +- `InferenceRequestResults`: Results of a completed request with output file paths +- `OutputFile`: Information about an output file (name, path, size) +- `HealthStatus`: API health status response +- `ProgressInfo`: Progress information (progress string, current_step, total_steps) + +### Enums + +- `RequestStatus`: Request status values + - Initial: `ACCEPTED`, `QUEUED` + - Processing: `RUNNING` + - Final: `COMPLETED`, `FAILED`, `CANCELLED`, `PENDING_RESULTS` + +## Examples + +The `examples/` directory contains complete, runnable example scripts: + +### `basic_forecast.py` - Basic Deterministic Forecast + +A comprehensive example showing how to run a simple deterministic forecast using +`RemoteEarth2Workflow`. + +### `downscaled_forecast.py` - Downscaled Forecast + +Example demonstrating high-resolution downscaled forecasting using a remote global +forecast model with a local downscaling model. + +### `diagnostic_analysis.py` - Diagnostic Analysis + +Specialized example for running local diagnostic models with remote inference results. + +### Running the Examples + +Each example can be run independently: + +```bash +cd examples/ + +# Run basic deterministic forecast +python basic_forecast.py + +# Run downscaled forecast +python downscaled_forecast.py + +# Run diagnostic analysis +python diagnostic_analysis.py +``` + +**Prerequisites:** + +- Earth2Studio API server running +- Client SDK installed with dependencies +- Sufficient disk space for forecast outputs + +**Configuration:** + +All examples support configuring the API endpoint via environment variable: + +```bash +# Set custom API endpoint (optional) +export EARTH2STUDIO_API_URL="http://your-api-server:8000" + +# Or use default localhost:8000 if not set +python basic_forecast.py +``` diff --git a/serve/client/examples/basic_forecast.py b/serve/client/examples/basic_forecast.py new file mode 100644 index 000000000..a2cd9236f --- /dev/null +++ b/serve/client/examples/basic_forecast.py @@ -0,0 +1,116 @@ +#!/usr/bin/env python3 +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +""" +Basic deterministic forecast example using Earth2Studio Client SDK. + +This example shows how to: +1. Access a remote workflow +2. Submit a simple deterministic forecast request and retrieve results as xarray dataset +3. Extract 2-meter temperature data at a specific location +4. Create and save a matplotlib line plot of the forecast +""" + +import os +from datetime import datetime + +import matplotlib.pyplot as plt +import torch + +from earth2studio.serve.client.e2client import RemoteEarth2Workflow + +# /// script +# dependencies = [ +# "torch", +# "earth2studio[serve]>=0.9.0", +# "matplotlib>=3.3.0", +# ] +# /// + + +def main( + plot_file: str = "t2m_plot.png", + lat: float = 37.4, + lon: float = -122.0, + start_time: datetime = datetime(2025, 8, 21, 6), + num_steps: int = 10, +) -> None: + """Run a basic deterministic forecast and save a t2m plot. + + Args: + plot_file: Path to save the temperature plot (default: 't2m_plot.png') + lat: Latitude for temperature extraction (default: 37.4) + lon: Longitude for temperature extraction (default: -122.0) + start_time: Forecast initialisation time (default: 2025-08-21 06:00 UTC) + num_steps: Number of forecast time steps (default: 10) + """ + + # Create client (configurable via environment variable) + api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") + api_token = os.getenv("EARTH2STUDIO_API_TOKEN", "") + workflow = RemoteEarth2Workflow( + api_url, + workflow_name="deterministic_earth2_workflow", + device="cuda" if torch.cuda.is_available() else "cpu", + token=api_token, + ) + + # Check if API is healthy + try: + health = workflow.client.health_check() + print(f"✓ API Status: {health.status}") + except Exception as e: + print(f"✗ API not available: {e}") + return + + # Call workflow and get result + try: + ds = workflow(start_time=[start_time], num_steps=num_steps).as_dataset() + except Exception as e: + print(f"\n❌ Forecast failed: {e}") + return + + # Extract t2m data for the specified location + t2m = ds["t2m"].sel(lat=lat, lon=lon, method="nearest").values.ravel() + + # Extract time coordinate + time_coord = ds["lead_time"].values.astype("timedelta64[h]") + + # Create line plot of temperature + print(f" Creating plot: {plot_file}") + fig, ax = plt.subplots(figsize=(10, 6)) + ax.plot(time_coord, t2m, marker="o", linewidth=2, markersize=6) + ax.set_xlabel("Lead Time (h)", fontsize=12) + ax.set_ylabel("2-meter Temperature (K)", fontsize=12) + ax.set_title( + f"Temperature Forecast starting {start_time} at {lat}°N, {lon}°E", + fontsize=14, + fontweight="bold", + ) + ax.grid(True, alpha=0.3) + + # Save the plot + fig.tight_layout() + fig.savefig(plot_file, dpi=150, bbox_inches="tight") + plt.close(fig) + + print("\n🎉 Forecast complete!") + print(f" Plot saved to: {plot_file}") + + +if __name__ == "__main__": + main() diff --git a/serve/client/examples/diagnostic_analysis.py b/serve/client/examples/diagnostic_analysis.py new file mode 100644 index 000000000..d4040b0e8 --- /dev/null +++ b/serve/client/examples/diagnostic_analysis.py @@ -0,0 +1,155 @@ +#!/usr/bin/env python3 +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +""" +Forecast example with local diagnostic using Earth2Studio Client SDK. + +This example shows how to: +1. Access a remote workflow +2. Submit a simple deterministic forecast request and retrieve results as xarray dataset +3. Run precipitation diagnostic model locally to get precipitation +4. Create and save a matplotlib line plot of the precipitation forecast +""" + +import os +from datetime import datetime, timedelta + +import matplotlib.pyplot as plt +import torch +import xarray as xr + +from earth2studio.io import XarrayBackend # type: ignore[import-untyped] +from earth2studio.models.dx import PrecipitationAFNO # type: ignore[import-untyped] +from earth2studio.run import diagnostic # type: ignore[import-untyped] +from earth2studio.serve.client.e2client import RemoteEarth2Workflow +from earth2studio.utils.type import ( # type: ignore[import-untyped] + LeadTimeArray, + TimeArray, + VariableArray, +) + +# /// script +# dependencies = [ +# "torch", +# "earth2studio[serve]>=0.9.0", +# "matplotlib>=3.3.0", +# ] +# /// + + +def main( + plot_file: str = "tp_plot.png", + lat: float = 37.4, + lon: float = -122.0, + start_time: datetime = datetime(2025, 8, 21, 6), + num_steps: int = 10, +) -> None: + """Run a basic deterministic forecast and save a t2m plot. + + Args: + plot_file: Path to save the precipitation plot (default: 'tp_plot.png') + lat: Latitude for precipitation extraction (default: 37.4) + lon: Longitude for precipitation extraction (default: -122.0) + start_time: Start time for the forecast (default: 2025-08-21 06:00 UTC) + num_steps: Number of forecast time steps (default: 10) + """ + + # Create client (configurable via environment variable) + api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") + api_token = os.getenv("EARTH2STUDIO_API_TOKEN", "") + workflow = RemoteEarth2Workflow( + api_url, + workflow_name="deterministic_earth2_workflow", + device="cuda" if torch.cuda.is_available() else "cpu", + token=api_token, + ) + + # Check if API is healthy + try: + health = workflow.client.health_check() + print(f"✓ API Status: {health.status}") + except Exception as e: + print(f"✗ API not available: {e}") + return + + # Call workflow and get result as an iterable model + try: + model = workflow(start_time=[start_time], num_steps=num_steps).as_model() + except Exception as e: + print(f"\n❌ Forecast failed: {e}") + return + + precip_afno = PrecipitationAFNO.from_pretrained() + io = XarrayBackend() + data = NullDataSource() + + diagnostic( + [start_time], num_steps, model, precip_afno, data, io, device=model.device + ) + + # Extract total precipitation for the specified location + ds = io.root + tp = ds["tp"].sel(lat=lat, lon=lon, method="nearest").values.ravel() + + # Extract time coordinate + time_coord = ds["lead_time"].values.astype("timedelta64[h]") + + # Create line plot of total precipitation + print(f" Creating plot: {plot_file}") + fig, ax = plt.subplots(figsize=(10, 6)) + ax.plot(time_coord, tp, marker="o", linewidth=2, markersize=6) + ax.set_xlabel("Lead Time (h)", fontsize=12) + ax.set_ylabel("Total Precipitation (m)", fontsize=12) + ax.set_title( + f"Precipitation Forecast starting {start_time} at {lat}°N, {lon}°E", + fontsize=14, + fontweight="bold", + ) + ax.grid(True, alpha=0.3) + + # Save the plot + fig.tight_layout() + fig.savefig(plot_file, dpi=150, bbox_inches="tight") + plt.close(fig) + + print("\n🎉 Forecast complete!") + print(f" Plot saved to: {plot_file}") + + +class NullDataSource: + """Minimal data source that returns empty DataArray for diagnostic input.""" + + def __call__( + self, + time: datetime | list[datetime] | TimeArray, + lead_time: timedelta | list[timedelta] | LeadTimeArray, + variable: str | list[str] | VariableArray, + ) -> xr.DataArray: + """Return an empty DataArray (unused coords for local diagnostic).""" + return xr.DataArray() + + async def fetch( + self, + time: datetime | list[datetime] | TimeArray, + lead_time: timedelta | list[timedelta] | LeadTimeArray, + variable: str | list[str] | VariableArray, + ) -> xr.DataArray: + return xr.DataArray() + + +if __name__ == "__main__": + main() diff --git a/serve/client/examples/downscaled_forecast.py b/serve/client/examples/downscaled_forecast.py new file mode 100644 index 000000000..190a155f1 --- /dev/null +++ b/serve/client/examples/downscaled_forecast.py @@ -0,0 +1,128 @@ +#!/usr/bin/env python3 +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +""" +Forecast example with local diagnostic using Earth2Studio Client SDK. + +This example shows how to: +1. Access a remote workflow +2. Submit a simple deterministic forecast request and retrieve results as xarray dataset +3. Run precipitation diagnostic model locally to get precipitation +4. Create and save a matplotlib line plot of the precipitation forecast +""" + +import os +from datetime import datetime + +import matplotlib.pyplot as plt +import torch + +from earth2studio.data import HRRR # type: ignore[import-untyped] +from earth2studio.io import XarrayBackend # type: ignore[import-untyped] +from earth2studio.models.px import StormCast # type: ignore[import-untyped] +from earth2studio.run import deterministic # type: ignore[import-untyped] +from earth2studio.serve.client.e2client import RemoteEarth2Workflow + +# /// script +# dependencies = [ +# "torch", +# "earth2studio[serve]>=0.9.0", +# "matplotlib>=3.3.0", +# ] +# /// + + +def main( + plot_file: str = "downscaled_t2m_plot.png", + y: float = 200.0, + x: float = 200.0, + start_time: datetime = datetime(2025, 8, 21, 6), + num_steps: int = 10, +) -> None: + """Run a remote FourCastNet 3 forecast and run a StormCast downscaling locally. + + Args: + plot_file: Path to save the temperature plot (default: 'downscaled_t2m_plot.png') + x: HRRR x coordinate for temperature extraction (default: 200.0) + y: HRRR y coordinate for temperature extraction (default: 200.0) + """ + + # Create client (configurable via environment variable) + api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") + api_token = os.getenv("EARTH2STUDIO_API_TOKEN", "") + workflow = RemoteEarth2Workflow( + api_url, + workflow_name="stormcast_fcn3_workflow", + device="cuda" if torch.cuda.is_available() else "cpu", + token=api_token, + ) + + # Check if API is healthy + try: + health = workflow.client.health_check() + print(f"✓ API Status: {health.status}") + except Exception as e: + print(f"✗ API not available: {e}") + return + + # Call workflow and get result as a data source + try: + conditioning_source = workflow( + start_time=start_time, num_hours=num_steps, run_stormcast=False + ).as_data_source() + except Exception as e: + print(f"\n❌ Forecast failed: {e}") + return + + stormcast = StormCast.from_pretrained() + stormcast.conditioning_data_source = conditioning_source + io = XarrayBackend() + hrrr_ic = HRRR() + + deterministic( + [start_time], num_steps, stormcast, hrrr_ic, io, device=workflow.device + ) + + # Extract t2m data for the specified location + ds = io.root + t2m = ds["t2m"].sel(hrrr_x=x, hrrr_y=y, method="nearest").values.ravel() + + # Extract time coordinate + time_coord = ds["lead_time"].values.astype("timedelta64[h]") + + # Create line plot of temperature + print(f" Creating plot: {plot_file}") + fig, ax = plt.subplots(figsize=(10, 6)) + ax.plot(time_coord, t2m, marker="o", linewidth=2, markersize=6) + ax.set_xlabel("Lead Time (h)", fontsize=12) + ax.set_ylabel("2-meter Temperature (K)", fontsize=12) + ax.set_title( + f"Temperature Forecast at x={x}, y={y}", fontsize=14, fontweight="bold" + ) + ax.grid(True, alpha=0.3) + + # Save the plot + fig.tight_layout() + fig.savefig(plot_file, dpi=150, bbox_inches="tight") + plt.close(fig) + + print("\n🎉 Forecast complete!") + print(f" Plot saved to: {plot_file}") + + +if __name__ == "__main__": + main() diff --git a/serve/client/pyproject.toml b/serve/client/pyproject.toml new file mode 100644 index 000000000..535eed801 --- /dev/null +++ b/serve/client/pyproject.toml @@ -0,0 +1,88 @@ +[build-system] +requires = ["hatchling", "uv-dynamic-versioning"] +build-backend = "hatchling.build" + +[project] +name = "earth2studio.serve.client" +dynamic = ["version"] +description = "Python client SDK for Earth2Studio REST API" +authors = [ + {name = "NVIDIA Scicomp Team"} +] +readme = "README.md" +license = {text = "Apache-2.0"} +requires-python = ">=3.11" +classifiers = [ + "Development Status :: 4 - Beta", + "Intended Audience :: Science/Research", + "Intended Audience :: Developers", + "License :: OSI Approved :: Apache Software License", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Topic :: Scientific/Engineering :: Atmospheric Science", + "Topic :: Scientific/Engineering :: Artificial Intelligence", + "Topic :: Software Development :: Libraries :: Python Modules", +] +keywords = [ + "earth2studio", + "weather", + "forecasting", + "climate", + "machine learning", + "api client", + "ensemble forecasting", + "diagnostic analysis" +] +dependencies = [ + "aiohttp>=3.8.0", + "earth2studio>=0.9.0", + "fsspec>=2021.6.0", + "numpy>=1.21.0", + "requests>=2.25.0", + "urllib3>=1.26.0", + "xarray>=0.19.0", +] + +[project.optional-dependencies] +e2studio = [ + "torch>=2.10.0", +] +examples = [ + "matplotlib>=3.3.0", + "nvidia-physicsnemo>=1.0.1,<2.0", + "omegaconf>=2.3.0", + "pytz", +] + +[tool.hatch.version] +source = "uv-dynamic-versioning" + +[tool.hatch.build.targets.wheel] +packages = ["earth2studio/serve/client"] + +[tool.hatch.build.targets.wheel.sources] +"earth2studio/serve/client" = "earth2studio/serve/client" + +[tool.uv-dynamic-versioning] +vcs = "git" +style = "pep440" +bump = true + +[project.urls] +Homepage = "https://github.com/NVIDIA/earth2studio" +Documentation = "https://nvidia.github.io/earth2studio/" +Repository = "https://github.com/NVIDIA/earth2studio" +"Bug Reports" = "https://github.com/NVIDIA/earth2studio/issues" + +[tool.uv] +dev-dependencies = [ + "pytest>=6.0", + "pytest-cov>=2.0", + "black>=21.0", + "isort>=5.0", + "flake8>=3.8", + "mypy>=0.910", + "pre-commit>=2.15.0", + "ruff>=0.7.2", +] diff --git a/serve/client/requirements.txt b/serve/client/requirements.txt new file mode 100644 index 000000000..3f5a5881d --- /dev/null +++ b/serve/client/requirements.txt @@ -0,0 +1,14 @@ +# Core dependencies for Earth2Studio Python Client SDK +requests>=2.25.0 +urllib3>=1.26.0 +aiohttp>=3.8.0 # For longer timeouts when reading remote zarr (fsspec HTTP) + +# Optional dependencies for enhanced functionality +# Uncomment as needed +# pandas>=1.3.0 # For data manipulation +# numpy>=1.21.0 # For numerical operations +# xarray>=0.19.0 # For working with multidimensional arrays +# matplotlib>=3.3.0 # For plotting and visualization +# omegaconf>=2.3.0 # For StormCast and other models that use OmegaConf +# nvidia-physicsnemo>=1.0.1,<2.0 # For StormCast and other physicsnemo-based models +# pytz # Required by nvidia-physicsnemo diff --git a/serve/inferenceserver/Makefile b/serve/server/Makefile similarity index 96% rename from serve/inferenceserver/Makefile rename to serve/server/Makefile index 73d96e3dc..7b44e8857 100644 --- a/serve/inferenceserver/Makefile +++ b/serve/server/Makefile @@ -61,4 +61,4 @@ install: # Run tests # integration_test: # @echo "Running API tests..." -# @python inferenceserver/test/integration/test_api.py +# @python server/test/integration/test_api.py diff --git a/serve/inferenceserver/README.md b/serve/server/README.md similarity index 99% rename from serve/inferenceserver/README.md rename to serve/server/README.md index f55f55bd9..c58bb3af5 100644 --- a/serve/inferenceserver/README.md +++ b/serve/server/README.md @@ -40,7 +40,7 @@ For current API usage, please refer to the workflow documentation linked above. 1. **Clone and navigate to the API directory:** ```bash - cd service/inferenceserver + cd serve/server ``` 2. **Make scripts executable and start services:** @@ -522,7 +522,7 @@ InferenceRequest: ### Server Configuration (config.yaml) The API server can be configured via the `config.yaml` file located at -`api_server/conf/config.yaml`: +`serve/server/conf/config.yaml`: #### Results Management diff --git a/serve/inferenceserver/README_earth2workflows.md b/serve/server/README_earth2workflows.md similarity index 98% rename from serve/inferenceserver/README_earth2workflows.md rename to serve/server/README_earth2workflows.md index 9eb10f16a..45ee1a059 100644 --- a/serve/inferenceserver/README_earth2workflows.md +++ b/serve/server/README_earth2workflows.md @@ -17,7 +17,7 @@ This is a simplified example demonstrating the key concepts. For complete workin `example_workflows` directory. ```python -from api_server.workflow import workflow_registry, Earth2Workflow +from earth2studio.serve.server import workflow_registry, Earth2Workflow from earth2studio.io import IOBackend from datetime import datetime from earth2studio.data import GFS diff --git a/serve/inferenceserver/README_object_storage.md b/serve/server/README_object_storage.md similarity index 100% rename from serve/inferenceserver/README_object_storage.md rename to serve/server/README_object_storage.md diff --git a/serve/inferenceserver/README_workflows.md b/serve/server/README_workflows.md similarity index 98% rename from serve/inferenceserver/README_workflows.md rename to serve/server/README_workflows.md index 008cb8863..e5dbe64ae 100644 --- a/serve/inferenceserver/README_workflows.md +++ b/serve/server/README_workflows.md @@ -75,7 +75,7 @@ updates. Create a **Pydantic model** that defines your workflow's input parameters: ```python -from api_server.workflow import WorkflowParameters +from earth2studio.serve.server.workflow import WorkflowParameters from pydantic import Field from typing import List @@ -101,7 +101,7 @@ Implement the **`Workflow`** base class and assign the parameter class to its `P attribute: ```python -from api_server.workflow import Workflow, WorkflowProgress, workflow_registry +from earth2studio.serve.server.workflow import Workflow, WorkflowProgress, workflow_registry from typing import Any, Dict, Union import json @@ -314,7 +314,7 @@ class DeterministicWorkflowParameters(WorkflowParameters): ### Workflow Implementation ```python -from api_server.workflow import WorkflowProgress +from earth2studio.serve.server.workflow import WorkflowProgress @workflow_registry.register() class DeterministicWorkflow(Workflow): @@ -763,7 +763,7 @@ The `WorkflowProgress` class provides four standard fields: ### Basic Usage ```python -from api_server.workflow import WorkflowProgress +from earth2studio.serve.server.workflow import WorkflowProgress # Simple progress update progress = WorkflowProgress( @@ -790,7 +790,7 @@ except Exception as e: You can extend `WorkflowProgress` with workflow-specific fields: ```python -from api_server.workflow import WorkflowProgress +from earth2studio.serve.server.workflow import WorkflowProgress from pydantic import Field from typing import Optional diff --git a/serve/inferenceserver/api_server/conf/config.yaml b/serve/server/conf/config.yaml similarity index 100% rename from serve/inferenceserver/api_server/conf/config.yaml rename to serve/server/conf/config.yaml diff --git a/serve/inferenceserver/api_server/conf/profiles.json b/serve/server/conf/profiles.json similarity index 100% rename from serve/inferenceserver/api_server/conf/profiles.json rename to serve/server/conf/profiles.json diff --git a/serve/inferenceserver/api_server/conf/workflows.yaml b/serve/server/conf/workflows.yaml similarity index 100% rename from serve/inferenceserver/api_server/conf/workflows.yaml rename to serve/server/conf/workflows.yaml diff --git a/serve/inferenceserver/env.example b/serve/server/env.example similarity index 100% rename from serve/inferenceserver/env.example rename to serve/server/env.example diff --git a/serve/inferenceserver/api_server/example_workflows/__init__.py b/serve/server/example_workflows/__init__.py similarity index 100% rename from serve/inferenceserver/api_server/example_workflows/__init__.py rename to serve/server/example_workflows/__init__.py diff --git a/serve/inferenceserver/api_server/example_workflows/deterministic_earth2_workflow.py b/serve/server/example_workflows/deterministic_earth2_workflow.py similarity index 96% rename from serve/inferenceserver/api_server/example_workflows/deterministic_earth2_workflow.py rename to serve/server/example_workflows/deterministic_earth2_workflow.py index 088bebcf4..d995fbc76 100644 --- a/serve/inferenceserver/api_server/example_workflows/deterministic_earth2_workflow.py +++ b/serve/server/example_workflows/deterministic_earth2_workflow.py @@ -25,11 +25,11 @@ from datetime import datetime from typing import Literal -from api_server.workflow import Earth2Workflow, workflow_registry from earth2studio import run from earth2studio.data import GFS from earth2studio.io import IOBackend from earth2studio.models.px import DLWP, FCN +from earth2studio.serve.server import Earth2Workflow, workflow_registry @workflow_registry.register diff --git a/serve/inferenceserver/api_server/example_workflows/deterministic_fcn.py b/serve/server/example_workflows/deterministic_fcn.py similarity index 99% rename from serve/inferenceserver/api_server/example_workflows/deterministic_fcn.py rename to serve/server/example_workflows/deterministic_fcn.py index 6afc30bf1..cdc63c250 100644 --- a/serve/inferenceserver/api_server/example_workflows/deterministic_fcn.py +++ b/serve/server/example_workflows/deterministic_fcn.py @@ -31,7 +31,7 @@ import zarr from pydantic import Field -from api_server.workflow import ( +from earth2studio.serve.server.workflow import ( Workflow, WorkflowParameters, WorkflowProgress, diff --git a/serve/inferenceserver/api_server/example_workflows/deterministic_workflow.py b/serve/server/example_workflows/deterministic_workflow.py similarity index 99% rename from serve/inferenceserver/api_server/example_workflows/deterministic_workflow.py rename to serve/server/example_workflows/deterministic_workflow.py index fa16ff285..ffa52e5e0 100644 --- a/serve/inferenceserver/api_server/example_workflows/deterministic_workflow.py +++ b/serve/server/example_workflows/deterministic_workflow.py @@ -29,7 +29,7 @@ import zarr from pydantic import Field -from api_server.workflow import ( +from earth2studio.serve.server.workflow import ( Workflow, WorkflowParameters, WorkflowProgress, diff --git a/serve/inferenceserver/api_server/example_workflows/diagnostic_workflow.py b/serve/server/example_workflows/diagnostic_workflow.py similarity index 99% rename from serve/inferenceserver/api_server/example_workflows/diagnostic_workflow.py rename to serve/server/example_workflows/diagnostic_workflow.py index b6b05c841..23ca1d0f0 100644 --- a/serve/inferenceserver/api_server/example_workflows/diagnostic_workflow.py +++ b/serve/server/example_workflows/diagnostic_workflow.py @@ -28,7 +28,7 @@ import zarr from pydantic import Field -from api_server.workflow import ( +from earth2studio.serve.server.workflow import ( Workflow, WorkflowParameters, WorkflowProgress, diff --git a/serve/inferenceserver/api_server/example_workflows/example_user_workflow.py b/serve/server/example_workflows/example_user_workflow.py similarity index 99% rename from serve/inferenceserver/api_server/example_workflows/example_user_workflow.py rename to serve/server/example_workflows/example_user_workflow.py index 69e390fdb..3245d5726 100644 --- a/serve/inferenceserver/api_server/example_workflows/example_user_workflow.py +++ b/serve/server/example_workflows/example_user_workflow.py @@ -38,7 +38,7 @@ from pydantic import Field -from api_server.workflow import ( +from earth2studio.serve.server.workflow import ( Workflow, WorkflowParameters, WorkflowProgress, diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py b/serve/server/example_workflows/foundry_fcn3.py similarity index 100% rename from serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py rename to serve/server/example_workflows/foundry_fcn3.py index 192f0e190..62e1334d8 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py +++ b/serve/server/example_workflows/foundry_fcn3.py @@ -5,8 +5,8 @@ import numpy as np import torch import zarr - from api_server.workflow import Earth2Workflow, WorkflowProgress, workflow_registry + from earth2studio.data import PlanetaryComputerECMWFOpenDataIFS, fetch_data from earth2studio.io import IOBackend, NetCDF4Backend, ZarrBackend from earth2studio.models.px import FCN3 diff --git a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py b/serve/server/example_workflows/foundry_fcn3_stormscope_goes.py similarity index 97% rename from serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py rename to serve/server/example_workflows/foundry_fcn3_stormscope_goes.py index 642b0ea89..9bf5d304f 100644 --- a/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py +++ b/serve/server/example_workflows/foundry_fcn3_stormscope_goes.py @@ -7,8 +7,8 @@ import torch import xarray as xr import zarr - from api_server.workflow import Earth2Workflow, WorkflowProgress, workflow_registry + from earth2studio.data import ( GOES, InferenceOutputSource, @@ -404,14 +404,16 @@ def __call__( y_ori, coords_y_ori = self.get_stormscope_input(start_time_stormscope) coords_out = self.stormscope.output_coords(self.stormscope.input_coords()) - output_coords = { - "ensemble": np.arange(len(seeds_stormscope)), - # Planetary Computer does not like separate 'lead_time' - "time": to_time_array([start_time_stormscope]) + lead_times, - "variable": variables, - "y": coords_out["y"], - "x": coords_out["x"], - } + output_coords = OrderedDict( + { + "ensemble": np.arange(len(seeds_stormscope)), + # Planetary Computer does not like separate 'lead_time' + "time": to_time_array([start_time_stormscope]) + lead_times, + "variable": variables, + "y": coords_out["y"], + "x": coords_out["x"], + } + ) self.setup_io(io, output_coords, seeds_fcn3, seeds_stormscope) total_samples = len(seeds_stormscope) diff --git a/serve/inferenceserver/api_server/example_workflows/stormcast_fcn3_workflow.py b/serve/server/example_workflows/stormcast_fcn3_workflow.py similarity index 98% rename from serve/inferenceserver/api_server/example_workflows/stormcast_fcn3_workflow.py rename to serve/server/example_workflows/stormcast_fcn3_workflow.py index 06ede58d1..c369906e6 100644 --- a/serve/inferenceserver/api_server/example_workflows/stormcast_fcn3_workflow.py +++ b/serve/server/example_workflows/stormcast_fcn3_workflow.py @@ -23,12 +23,12 @@ import torch import xarray as xr -from api_server.workflow import Earth2Workflow, workflow_registry from earth2studio import run from earth2studio.data import GFS, HRRR, InferenceOutputSource from earth2studio.io import IOBackend, NetCDF4Backend, XarrayBackend from earth2studio.models.dx import DerivedSurfacePressure from earth2studio.models.px import FCN3, DiagnosticWrapper, InterpModAFNO, StormCast +from earth2studio.serve.server import Earth2Workflow, workflow_registry @workflow_registry.register diff --git a/serve/inferenceserver/openapi.yaml b/serve/server/openapi.yaml similarity index 100% rename from serve/inferenceserver/openapi.yaml rename to serve/server/openapi.yaml diff --git a/serve/inferenceserver/api_server/planetary_computer/pc_client.py b/serve/server/planetary_computer/pc_client.py similarity index 100% rename from serve/inferenceserver/api_server/planetary_computer/pc_client.py rename to serve/server/planetary_computer/pc_client.py diff --git a/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3-stormscope-goes.json b/serve/server/planetary_computer/template-collection-fcn3-stormscope-goes.json similarity index 100% rename from serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3-stormscope-goes.json rename to serve/server/planetary_computer/template-collection-fcn3-stormscope-goes.json diff --git a/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3.json b/serve/server/planetary_computer/template-collection-fcn3.json similarity index 100% rename from serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3.json rename to serve/server/planetary_computer/template-collection-fcn3.json diff --git a/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3-stormscope-goes.json b/serve/server/planetary_computer/template-feature-fcn3-stormscope-goes.json similarity index 100% rename from serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3-stormscope-goes.json rename to serve/server/planetary_computer/template-feature-fcn3-stormscope-goes.json diff --git a/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3.json b/serve/server/planetary_computer/template-feature-fcn3.json similarity index 100% rename from serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3.json rename to serve/server/planetary_computer/template-feature-fcn3.json diff --git a/serve/inferenceserver/requirements.txt b/serve/server/requirements.txt similarity index 80% rename from serve/inferenceserver/requirements.txt rename to serve/server/requirements.txt index 30815a96e..69b3a0404 100644 --- a/serve/inferenceserver/requirements.txt +++ b/serve/server/requirements.txt @@ -1,3 +1,7 @@ +# For local runs from serve/server: install the project first so earth2studio.serve.server +# is importable: pip install -e ../.. +# (Dockerfile installs the project from repo root with -e . instead.) + # Core FastAPI dependencies fastapi>=0.104.0 uvicorn[standard]>=0.24.0 diff --git a/serve/inferenceserver/scripts/profile_workflow.sh b/serve/server/scripts/profile_workflow.sh similarity index 100% rename from serve/inferenceserver/scripts/profile_workflow.sh rename to serve/server/scripts/profile_workflow.sh diff --git a/serve/inferenceserver/scripts/redis.conf b/serve/server/scripts/redis.conf similarity index 100% rename from serve/inferenceserver/scripts/redis.conf rename to serve/server/scripts/redis.conf diff --git a/serve/inferenceserver/scripts/start_api_server.sh b/serve/server/scripts/start_api_server.sh similarity index 92% rename from serve/inferenceserver/scripts/start_api_server.sh rename to serve/server/scripts/start_api_server.sh index ca92db083..1c03c1b04 100755 --- a/serve/inferenceserver/scripts/start_api_server.sh +++ b/serve/server/scripts/start_api_server.sh @@ -18,10 +18,13 @@ # Earth2Studio Multiple Workers Startup Script # This script starts multiple API workers, and RQ workers -# Get the directory where this script is located. -SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" -# A way to override the config location while starting up the endpoint. -CONFIG_DIR=${CONFIG_DIR:-"${SCRIPT_DIR}/../api_server/conf"} +# Get the directory where this script is located (or use env from Docker/startup.sh). +SCRIPT_DIR=${SCRIPT_DIR:-"$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"} +CONFIG_DIR=${CONFIG_DIR:-"${SCRIPT_DIR}/../conf"} +# Export so uvicorn/rq workers (Python) see them for CONFIG_DIR/SCRIPT_DIR in main.py and config.py +export SCRIPT_DIR +export CONFIG_DIR +export WORKFLOW_DIR CONFIG_FILE="$CONFIG_DIR/config.yaml" # Function to read config values from YAML using Python @@ -82,9 +85,9 @@ cleanup() { fi # Stop all API workers - if pgrep -f "uvicorn.*api_server.main:app" > /dev/null; then + if pgrep -f "uvicorn.*earth2studio.serve.server.main:app" > /dev/null; then echo "Stopping API workers..." - pkill -f "uvicorn.*api_server.main:app" + pkill -f "uvicorn.*earth2studio.serve.server.main:app" fi # Stop all RQ inference workers @@ -127,7 +130,7 @@ trap cleanup SIGINT SIGTERM export EARTH2STUDIO_API_ACTIVE=1 # Start multiple workers using uvicorn with extended timeouts for large file downloads -CUDA_VISIBLE_DEVICES="" uvicorn api_server.main:app --host 0.0.0.0 --port $API_PORT --workers $NUM_WORKERS --loop asyncio --timeout-keep-alive 300 --timeout-graceful-shutdown 30 & +CUDA_VISIBLE_DEVICES="" uvicorn earth2studio.serve.server.main:app --host 0.0.0.0 --port $API_PORT --workers $NUM_WORKERS --loop asyncio --timeout-keep-alive 300 --timeout-graceful-shutdown 30 & UVICORN_PID=$! # Start RQ workers @@ -184,7 +187,7 @@ for i in $(seq 1 $NUM_FINALIZE_WORKERS); do done # Start cleanup daemon -CUDA_VISIBLE_DEVICES="" python -m api_server.cleanup_daemon & +CUDA_VISIBLE_DEVICES="" python -m earth2studio.serve.server.cleanup_daemon & CLEANUP_DAEMON_PID=$! echo "Started cleanup daemon (PID: $CLEANUP_DAEMON_PID)" @@ -192,7 +195,7 @@ echo "Started cleanup daemon (PID: $CLEANUP_DAEMON_PID)" sleep 5 # Check if API workers are running -API_WORKER_COUNT=$(pgrep -f "uvicorn.*api_server.main:app" | wc -l) +API_WORKER_COUNT=$(pgrep -f "uvicorn.*earth2studio.serve.server.main:app" | wc -l) if [ "$API_WORKER_COUNT" -eq 0 ]; then echo "Failed to start API workers..." exit 1 diff --git a/serve/inferenceserver/scripts/start_redis.sh b/serve/server/scripts/start_redis.sh similarity index 100% rename from serve/inferenceserver/scripts/start_redis.sh rename to serve/server/scripts/start_redis.sh diff --git a/serve/inferenceserver/scripts/startup.sh b/serve/server/scripts/startup.sh similarity index 59% rename from serve/inferenceserver/scripts/startup.sh rename to serve/server/scripts/startup.sh index 5ba90f71f..b5739fe07 100755 --- a/serve/inferenceserver/scripts/startup.sh +++ b/serve/server/scripts/startup.sh @@ -17,16 +17,18 @@ set -euo pipefail -# Set EARTH2STUDIO_MODEL_CACHE to use AZUREML_MODEL_DIR if available -if [ -n "${AZUREML_MODEL_DIR:-}" ]; then - echo "AZUREML_MODEL_DIR: $AZUREML_MODEL_DIR" - export EARTH2STUDIO_MODEL_CACHE="$AZUREML_MODEL_DIR/${EARTH2STUDIO_MODEL_SUBPATH:-e2s_fcn3_stormscope}" - echo "--------------------------------" - echo "EARTH2STUDIO_MODEL_CACHE: $EARTH2STUDIO_MODEL_CACHE" - ls -la $EARTH2STUDIO_MODEL_CACHE && echo "--------------------------------" -fi +# Use CONFIG_DIR/SCRIPT_DIR from env if set (e.g. in Docker); else resolve from script location +SCRIPT_DIR="${SCRIPT_DIR:-$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)}" +SERVE_SERVER_DIR="$(cd "$SCRIPT_DIR/.." && pwd)" +REPO_ROOT="$(cd "$SERVE_SERVER_DIR/../.." && pwd)" +export SCRIPT_DIR +export CONFIG_DIR="${CONFIG_DIR:-$SCRIPT_DIR/../conf}" +export WORKFLOW_DIR="${WORKFLOW_DIR:-}" -cd /workspace/earth2studio-project/serve/inferenceserver +# Ensure Python can find earth2studio (including earth2studio.serve.server) +export PYTHONPATH="${REPO_ROOT}:${PYTHONPATH:-}" + +cd "$SERVE_SERVER_DIR" make start-redis make start-api-server sleep infinity diff --git a/serve/inferenceserver/scripts/status.sh b/serve/server/scripts/status.sh similarity index 98% rename from serve/inferenceserver/scripts/status.sh rename to serve/server/scripts/status.sh index 5fc56b48c..2dcdaadf4 100755 --- a/serve/inferenceserver/scripts/status.sh +++ b/serve/server/scripts/status.sh @@ -52,7 +52,7 @@ echo "" # Check API workers status echo "API Workers:" -API_WORKERS=$(pgrep -f "uvicorn.*api_server.main:app") +API_WORKERS=$(pgrep -f "uvicorn.*earth2studio.serve.server.main:app") if [ -n "$API_WORKERS" ]; then WORKER_COUNT=$(echo "$API_WORKERS" | wc -l) echo " Status: Running ($WORKER_COUNT workers)" diff --git a/serve/inferenceserver/scripts/stop_api_server.sh b/serve/server/scripts/stop_api_server.sh similarity index 96% rename from serve/inferenceserver/scripts/stop_api_server.sh rename to serve/server/scripts/stop_api_server.sh index fc612450f..6f00e0830 100755 --- a/serve/inferenceserver/scripts/stop_api_server.sh +++ b/serve/server/scripts/stop_api_server.sh @@ -19,7 +19,7 @@ echo "Stopping API Server..." # Stop API workers echo "Stopping API workers..." -pkill -f "uvicorn.*api_server.main:app" +pkill -f "uvicorn.*earth2studio.serve.server.main:app" # Stop RQ inference workers echo "Stopping RQ inference workers..." diff --git a/serve/inferenceserver/scripts/stop_redis.sh b/serve/server/scripts/stop_redis.sh similarity index 100% rename from serve/inferenceserver/scripts/stop_redis.sh rename to serve/server/scripts/stop_redis.sh diff --git a/serve/test/unit/test_e2workflow.py b/serve/server/test/unit/test_e2workflow.py similarity index 82% rename from serve/test/unit/test_e2workflow.py rename to serve/server/test/unit/test_e2workflow.py index 6a4e08d1f..b275bd433 100644 --- a/serve/test/unit/test_e2workflow.py +++ b/serve/server/test/unit/test_e2workflow.py @@ -14,22 +14,21 @@ # See the License for the specific language governing permissions and # limitations under the License. +from collections import OrderedDict +from pathlib import Path from unittest.mock import MagicMock, Mock, patch import pytest -import redis +import redis # type: ignore[import-untyped] import torch -from api_server.workflow import ( - Earth2Workflow, - WorkflowParameters, -) -from api_server.workflow.e2workflow import ( + +from earth2studio.io import IOBackend +from earth2studio.serve.server import Earth2Workflow, WorkflowParameters +from earth2studio.serve.server.e2workflow import ( AutoParameters, BackendProgress, func_to_model, ) - -from earth2studio.io import IOBackend from earth2studio.utils.type import CoordSystem @@ -37,10 +36,12 @@ class TestFuncToModel: """Test func_to_model helper function""" - def test_function_to_model_conversion(self): + def test_function_to_model_conversion(self) -> None: """Test converting function signature to Pydantic model""" - def test_func(required: int, optional: str = "default", exclude_me: int = 0): + def test_func( + required: int, optional: str = "default", exclude_me: int = 0 + ) -> None: pass model = func_to_model(test_func, exclude_params={"exclude_me"}) @@ -57,11 +58,11 @@ def test_func(required: int, optional: str = "default", exclude_me: int = 0): class TestAutoParameters: """Test AutoParameters metaclass""" - def test_auto_generates_parameters_from_call_signature(self): + def test_auto_generates_parameters_from_call_signature(self) -> None: """Test that AutoParameters creates Parameters from __call__ signature""" class TestWorkflow(metaclass=AutoParameters): - def __call__(self, io: IOBackend, x: int, y: str = "default"): + def __call__(self, io: IOBackend, x: int, y: str = "default") -> None: pass # Verify Parameters class is created with correct name @@ -80,7 +81,7 @@ def __call__(self, io: IOBackend, x: int, y: str = "default"): class TestEarth2WorkflowImpl(Earth2Workflow): """Simple test implementation of Earth2Workflow""" - def __call__(self, io: IOBackend, x: int = 10, y: str = "default"): + def __call__(self, io: IOBackend, x: int = 10, y: str = "default") -> None: """Test implementation with simple parameters""" # Store call info for testing self.called_with = {"io": io, "x": x, "y": y} @@ -95,7 +96,7 @@ def __call__( required_param: int, optional_param: str = "default", num_hours: int = 24, - ): + ) -> None: """Test implementation with required and optional parameters""" self.called_with = { "io": io, @@ -109,12 +110,12 @@ def __call__( class TestEarth2Workflow: """Test Earth2Workflow-specific functionality (base Workflow tests in test_workflow.py)""" - def setup_method(self): + def setup_method(self) -> None: """Set up test fixtures""" self.workflow = TestEarth2WorkflowImpl() self.workflow.name = "test_workflow" - def test_validate_parameters_uses_auto_generated_parameters(self): + def test_validate_parameters_uses_auto_generated_parameters(self) -> None: """Test that validate_parameters works with auto-generated Parameters class""" params = TestEarth2WorkflowImpl.validate_parameters({"x": 30, "y": "test"}) assert isinstance(params, WorkflowParameters) @@ -125,10 +126,10 @@ def test_validate_parameters_uses_auto_generated_parameters(self): with pytest.raises(ValueError): ComplexEarth2WorkflowImpl.validate_parameters({"optional_param": "test"}) - @patch("api_server.e2workflow.get_config") + @patch("earth2studio.serve.server.e2workflow.get_config") def test_run_method_with_io_backend_and_progress_updates( - self, mock_get_config, tmp_path - ): + self, mock_get_config: MagicMock, tmp_path: Path + ) -> None: """Test Earth2Workflow.run creates IOBackend and updates progress""" mock_config = MagicMock() mock_config.paths.output_format = "zarr" @@ -140,7 +141,7 @@ def test_run_method_with_io_backend_and_progress_updates( with ( patch.object(self.workflow, "update_execution_data") as mock_update, patch.object(self.workflow, "get_output_path") as mock_get_path, - patch("api_server.e2workflow.ZarrBackend") as mock_zarr, + patch("earth2studio.serve.server.e2workflow.ZarrBackend") as mock_zarr, ): mock_get_path.return_value = tmp_path / "test_output" mock_io = Mock(spec=IOBackend) @@ -156,15 +157,17 @@ def test_run_method_with_io_backend_and_progress_updates( # Verify progress updates were made assert mock_update.call_count >= 2 - @patch("api_server.e2workflow.get_config") - def test_run_method_handles_workflow_exceptions(self, mock_get_config): + @patch("earth2studio.serve.server.e2workflow.get_config") + def test_run_method_handles_workflow_exceptions( + self, mock_get_config: MagicMock + ) -> None: """Test that run method properly handles exceptions from workflow execution""" mock_config = MagicMock() mock_config.paths.output_format = "zarr" mock_get_config.return_value = mock_config class FailingWorkflow(Earth2Workflow): - def __call__(self, io: IOBackend, x: int = 10): + def __call__(self, io: IOBackend, x: int = 10) -> None: raise RuntimeError("Workflow execution failed") failing_workflow = FailingWorkflow() @@ -174,7 +177,7 @@ def __call__(self, io: IOBackend, x: int = 10): with ( patch.object(failing_workflow, "update_execution_data") as mock_update, patch.object(failing_workflow, "get_output_path"), - patch("api_server.e2workflow.ZarrBackend"), + patch("earth2studio.serve.server.e2workflow.ZarrBackend"), ): with pytest.raises(RuntimeError, match="Workflow execution failed"): failing_workflow.run({}, "exec_fail") @@ -192,7 +195,7 @@ def __call__(self, io: IOBackend, x: int = 10): class TestBackendProgress: """Test BackendProgress wrapper for progress tracking""" - def setup_method(self): + def setup_method(self) -> None: """Set up test fixtures""" self.mock_io = Mock(spec=IOBackend) self.mock_workflow = Mock(spec=Earth2Workflow) @@ -201,9 +204,9 @@ def setup_method(self): self.mock_io, self.mock_workflow, self.execution_id ) - def test_add_array_initializes_progress_tracking(self): + def test_add_array_initializes_progress_tracking(self) -> None: """Test that add_array initializes progress tracking when progress_dim present""" - coords = {"lead_time": [0, 1, 2, 3], "lat": [0, 1]} + coords = OrderedDict({"lead_time": [0, 1, 2, 3], "lat": [0, 1]}) self.backend.add_array(coords, "temperature") @@ -218,23 +221,23 @@ def test_add_array_initializes_progress_tracking(self): self.backend.add_array(coords, "pressure") assert self.backend.progress_array == "temperature" - def test_write_updates_progress(self): + def test_write_updates_progress(self) -> None: """Test that write updates progress for tracked arrays""" # Initialize progress tracking - init_coords: CoordSystem = {"lead_time": [0, 1, 2], "lat": [0, 1]} + init_coords: CoordSystem = OrderedDict({"lead_time": [0, 1, 2], "lat": [0, 1]}) self.backend.add_array(init_coords, "temperature") self.mock_workflow.update_execution_data.reset_mock() # Write data at different time steps data = torch.randn(1, 2) - write_coords1: CoordSystem = {"lead_time": [0], "lat": [0, 1]} + write_coords1: CoordSystem = OrderedDict({"lead_time": [0], "lat": [0, 1]}) self.backend.write(data, write_coords1, "temperature") self.mock_workflow.update_execution_data.assert_called_with( self.execution_id, updates={"current_step": 1} ) - write_coords2: CoordSystem = {"lead_time": [2], "lat": [0, 1]} + write_coords2: CoordSystem = OrderedDict({"lead_time": [2], "lat": [0, 1]}) self.backend.write(data, write_coords2, "temperature") self.mock_workflow.update_execution_data.assert_called_with( self.execution_id, updates={"current_step": 3} @@ -255,23 +258,29 @@ def test_passthrough_to_underlying_io(self) -> None: class TestEarth2WorkflowIntegration: """Integration tests for Earth2Workflow with BackendProgress""" - @patch("api_server.e2workflow.get_config") - def test_workflow_with_backend_progress_tracking(self, mock_get_config): + @patch("earth2studio.serve.server.e2workflow.get_config") + def test_workflow_with_backend_progress_tracking( + self, mock_get_config: MagicMock + ) -> None: """Test complete workflow execution with automatic progress tracking""" mock_config = MagicMock() mock_config.paths.output_format = "zarr" mock_get_config.return_value = mock_config class TestWorkflow(Earth2Workflow): - def __call__(self, io: IOBackend, num_steps: int = 3): - coords: CoordSystem = { - "lead_time": list(range(num_steps)), - "lat": [0, 1], - } + def __call__(self, io: IOBackend, num_steps: int = 3) -> None: + coords: CoordSystem = OrderedDict( + { + "lead_time": list(range(num_steps)), + "lat": [0, 1], + } + ) io.add_array(coords, "forecast") for i in range(num_steps): data = torch.randn(1, 2) - write_coords: CoordSystem = {"lead_time": [i], "lat": [0, 1]} + write_coords: CoordSystem = OrderedDict( + {"lead_time": [i], "lat": [0, 1]} + ) io.write(data, write_coords, "forecast") workflow = TestWorkflow() @@ -281,7 +290,7 @@ def __call__(self, io: IOBackend, num_steps: int = 3): with ( patch.object(workflow, "update_execution_data") as mock_update, patch.object(workflow, "get_output_path"), - patch("api_server.e2workflow.ZarrBackend"), + patch("earth2studio.serve.server.e2workflow.ZarrBackend"), ): result = workflow.run({"num_steps": 3}, "exec_test") diff --git a/serve/test/unit/test_e2workflow_params.py b/serve/server/test/unit/test_e2workflow_params.py similarity index 86% rename from serve/test/unit/test_e2workflow_params.py rename to serve/server/test/unit/test_e2workflow_params.py index 691bb5f7c..a62984613 100644 --- a/serve/test/unit/test_e2workflow_params.py +++ b/serve/server/test/unit/test_e2workflow_params.py @@ -21,41 +21,26 @@ import os from datetime import datetime from typing import Literal -from unittest.mock import Mock import pytest from pydantic import ValidationError +from earth2studio.io import IOBackend +from earth2studio.serve.server.e2workflow import Earth2Workflow, func_to_model + # Set environment variable before importing workflows os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" -# Try to import earth2studio, skip tests if not available -try: - from earth2studio.io import IOBackend - - EARTH2STUDIO_AVAILABLE = True -except ImportError: - EARTH2STUDIO_AVAILABLE = False - IOBackend = Mock # Mock for type hints - -# ruff: noqa: E402 -from api_server.workflow.e2workflow import Earth2Workflow, func_to_model - -# Skip all tests in this module if earth2studio is not available -pytestmark = pytest.mark.skipif( - not EARTH2STUDIO_AVAILABLE, reason="earth2studio not available in test environment" -) - class TestAutoParametersValidation: """Test validation of auto-generated parameters from Earth2Workflow""" - def test_auto_parameters_with_num_steps_validation(self): + def test_auto_parameters_with_num_steps_validation(self) -> None: """Test that num_steps parameter gets automatic range validation""" # Create a mock Earth2Workflow with num_steps parameter class TestWorkflow(Earth2Workflow): - def __init__(self, model_type: Literal["fcn", "dlwp"] = "fcn"): + def __init__(self, model_type: Literal["fcn", "dlwp"] = "fcn") -> None: pass def __call__( @@ -63,7 +48,7 @@ def __call__( io: IOBackend, start_time: list[datetime] = [datetime(2024, 1, 1, 0)], num_steps: int = 20, - ): + ) -> None: pass # Test valid num_steps @@ -92,18 +77,18 @@ def __call__( } ) - def test_auto_parameters_with_start_time_validation(self): + def test_auto_parameters_with_start_time_validation(self) -> None: """Test that start_time parameter gets ISO 8601 validation""" class TestWorkflow(Earth2Workflow): - def __init__(self): + def __init__(self) -> None: pass def __call__( self, io: IOBackend, start_time: list[datetime] = [datetime(2024, 1, 1, 0)], - ): + ) -> None: pass # Test valid ISO 8601 formats @@ -131,14 +116,14 @@ def __call__( ): TestWorkflow.validate_parameters({"start_time": times}) - def test_auto_parameters_with_config_validation(self): + def test_auto_parameters_with_config_validation(self) -> None: """Test that __init__ parameters get proper validation""" class TestWorkflow(Earth2Workflow): - def __init__(self, model_type: Literal["fcn", "dlwp"] = "fcn"): + def __init__(self, model_type: Literal["fcn", "dlwp"] = "fcn") -> None: self.model_type = model_type - def __call__(self, io: IOBackend): + def __call__(self, io: IOBackend) -> None: pass # Valid model_type @@ -155,14 +140,14 @@ def __call__(self, io: IOBackend): with pytest.raises(ValidationError): TestWorkflow.Config.model_validate({"model_type": "invalid"}) - def test_auto_parameters_nsteps_variant(self): + def test_auto_parameters_nsteps_variant(self) -> None: """Test that nsteps (alternate spelling) also gets range validation""" class TestWorkflow(Earth2Workflow): - def __init__(self): + def __init__(self) -> None: pass - def __call__(self, io: IOBackend, nsteps: int = 10): + def __call__(self, io: IOBackend, nsteps: int = 10) -> None: pass # Valid nsteps @@ -173,7 +158,7 @@ def __call__(self, io: IOBackend, nsteps: int = 10): with pytest.raises(ValidationError, match="greater than or equal to 1"): TestWorkflow.validate_parameters({"nsteps": 0}) - def test_func_to_model_with_validation(self): + def test_func_to_model_with_validation(self) -> None: """Test func_to_model creates models with proper validation""" def test_func( @@ -199,11 +184,11 @@ def test_func( with pytest.raises(ValidationError, match="is not a valid ISO 8601"): TestModel.model_validate({"start_time": ["2024-01-01"]}) # Missing time - def test_auto_parameters_with_defaults(self): + def test_auto_parameters_with_defaults(self) -> None: """Test that default values work correctly with validation""" class TestWorkflow(Earth2Workflow): - def __init__(self): + def __init__(self) -> None: pass def __call__( @@ -211,7 +196,7 @@ def __call__( io: IOBackend, start_time: list[datetime] = [datetime(2024, 1, 1, 0)], num_steps: int = 20, - ): + ) -> None: pass # Use defaults @@ -229,7 +214,7 @@ def __call__( class TestEarth2WorkflowIntegration: """Integration tests for Earth2Workflow validation""" - def test_complete_workflow_validation(self): + def test_complete_workflow_validation(self) -> None: """Test complete validation workflow""" class CompleteWorkflow(Earth2Workflow): @@ -237,7 +222,7 @@ def __init__( self, model_type: Literal["fcn", "dlwp"] = "fcn", device: Literal["cpu", "cuda"] = "cpu", - ): + ) -> None: self.model_type = model_type self.device = device @@ -247,7 +232,7 @@ def __call__( start_time: list[datetime] = [datetime(2024, 1, 1, 0)], num_steps: int = 20, output_frequency: int = 1, - ): + ) -> None: pass # Test valid complete parameters @@ -274,14 +259,14 @@ def __call__( with pytest.raises(ValidationError): CompleteWorkflow.validate_parameters({"num_steps": -1}) - def test_workflow_with_extra_fields_rejected(self): + def test_workflow_with_extra_fields_rejected(self) -> None: """Test that extra fields are rejected due to strict validation""" class TestWorkflow(Earth2Workflow): - def __init__(self): + def __init__(self) -> None: pass - def __call__(self, io: IOBackend, num_steps: int = 20): + def __call__(self, io: IOBackend, num_steps: int = 20) -> None: pass # Extra field should be rejected diff --git a/test/Dockerfile b/test/Dockerfile index 413fa7d24..f7547d178 100644 --- a/test/Dockerfile +++ b/test/Dockerfile @@ -1,6 +1,6 @@ FROM nvcr.io/nvidia/cuda:12.8.1-cudnn-devel-ubuntu24.04 # Install uv -COPY --from=ghcr.io/astral-sh/uv:0.9.7 /uv /uvx /bin/ +COPY --from=ghcr.io/astral-sh/uv:0.10.9 /uv /uvx /bin/ # Install system dependencies RUN apt-get update && apt-get install -y \ python3-dev \ diff --git a/test/data/test_data_utils.py b/test/data/test_data_utils.py index 3eeeea098..f9c3eaf5b 100644 --- a/test/data/test_data_utils.py +++ b/test/data/test_data_utils.py @@ -20,6 +20,7 @@ from collections import OrderedDict import numpy as np +import pandas as pd import pytest import torch import xarray as xr @@ -28,11 +29,17 @@ from earth2studio.data import ( DataArrayFile, Random, + RandomDataFrame, datasource_to_file, fetch_data, + fetch_dataframe, prep_data_array, ) -from earth2studio.data.utils import AsyncCachingFileSystem, datasource_cache_root +from earth2studio.data.utils import ( + AsyncCachingFileSystem, + datasource_cache_root, + prep_forecast_inputs, +) @pytest.fixture @@ -113,6 +120,7 @@ def test_prep_dataarray(foo_data_array, dims, device): def test_prep_data_array_curvilinear(equilinear_data_array, curvilinear_data_array): + pytest.importorskip("scipy", reason="scipy not installed") # Create another curvilinear grid y, x = np.mgrid[0:20, 0:24] target_lat = 30 + y * 1 + np.cos(x * 0.3) * 0.3 @@ -184,6 +192,118 @@ def test_fetch_data(time, lead_time, device): assert not torch.isnan(x).any() +@pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], +) +def test_fetch_data_legacy_false(device): + + if device == "cuda:0" and torch.cuda.is_available(): + try: + import cupy as cp + except ImportError: + pytest.skip("cupy not available for CUDA device") + + time = np.array([np.datetime64("1993-04-05T00:00")]) + lead_time = np.array([np.timedelta64(0, "h")]) + variable = np.array(["a", "b", "c"]) + domain = OrderedDict({"lat": np.random.randn(720), "lon": np.random.randn(1440)}) + r = Random(domain) + + da = fetch_data(r, time, variable, lead_time, device=device, legacy=False) + + assert isinstance(da, xr.DataArray) + assert da.dims == ("time", "lead_time", "variable", "lat", "lon") + assert np.all(da.coords["time"].values == time) + assert np.all(da.coords["lead_time"].values == lead_time) + assert np.all(da.coords["variable"].values == variable) + + if device == "cuda:0" and torch.cuda.is_available(): + assert isinstance(da.data, cp.ndarray) + assert not cp.all(cp.isnan(da.data)) + else: + assert isinstance(da.data, np.ndarray) + assert not np.all(np.isnan(da.data)) + + +@pytest.mark.parametrize( + "time", + [ + np.array([np.datetime64("1993-04-05T00:00")]), + np.array( + [ + np.datetime64("1999-10-11T12:00"), + np.datetime64("2001-06-04T00:00"), + ] + ), + ], +) +@pytest.mark.parametrize( + "lead_time", + [ + np.array([np.timedelta64(0, "h")]), + np.array([np.timedelta64(-6, "h"), np.timedelta64(0, "h")]), + ], +) +@pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], +) +def test_fetch_dataframe(time, lead_time, device): + variable = np.array(["t2m", "u10m"]) + rdf = RandomDataFrame(n_obs=5) + + # For CUDA, check if cudf is available first + if device != "cpu": + try: + import cudf + except ImportError: + pytest.skip("cudf not available for CUDA device") + + result = fetch_dataframe(rdf, time, variable, lead_time=lead_time, device=device) + + # Check return type based on device + if device == "cpu": + assert isinstance(result, pd.DataFrame) + df = result + else: + # CUDA device - should return cudf.DataFrame + import cudf + + assert isinstance(result, cudf.DataFrame) + df = result.to_pandas() + + # Check that DataFrame has expected columns + assert "time" in df.columns + assert "lat" in df.columns + assert "lon" in df.columns + assert "observation" in df.columns + assert "variable" in df.columns + + # Check that variables match + assert set(df["variable"].unique()).issubset(set(variable)) + + # Check that we have data + assert len(df) > 0 + assert not df.isnull().any().any() + + @pytest.mark.parametrize( "time", [ @@ -205,6 +325,7 @@ def test_fetch_data(time, lead_time, device): ) @pytest.mark.parametrize("device", ["cpu", "cuda:0"]) def test_fetch_data_interp(time, lead_time, device): + pytest.importorskip("scipy", reason="scipy not installed") # Original (source) domain variable = np.array(["a", "b", "c"]) domain = OrderedDict( @@ -441,6 +562,64 @@ def test_clear_cache(tmp_path): assert not os.path.exists(dummy_file) +@pytest.mark.parametrize( + "time, lead_time, variable", + [ + (datetime.datetime(2020, 1, 1, 12, 0), datetime.timedelta(hours=6), "t2m"), + ( + [ + datetime.datetime(2020, 1, 1, 12, 0), + datetime.datetime(2020, 1, 2, 12, 0), + ], + [datetime.timedelta(hours=6), datetime.timedelta(hours=12)], + ["t2m", "u10m"], + ), + ( + np.array( + [np.datetime64("2020-01-01T12:00"), np.datetime64("2020-01-02T12:00")] + ), + np.array([np.timedelta64(6, "h"), np.timedelta64(12, "h")]), + np.array(["t2m", "u10m", "v10m"]), + ), + ], +) +def test_prep_forecast_inputs(time, lead_time, variable): + time_list, lead_time_list, variable_list = prep_forecast_inputs( + time, lead_time, variable + ) + + assert isinstance(time_list, list) + assert all(isinstance(t, datetime.datetime) for t in time_list) + + assert isinstance(lead_time_list, list) + assert all(isinstance(lt, datetime.timedelta) for lt in lead_time_list) + + assert isinstance(variable_list, list) + assert all(isinstance(v, str) for v in variable_list) + + # Verify correct lengths + if isinstance(time, datetime.datetime): + assert len(time_list) == 1 + elif isinstance(time, list): + assert len(time_list) == len(time) + else: # np.ndarray + assert len(time_list) == len(time) + + if isinstance(lead_time, datetime.timedelta): + assert len(lead_time_list) == 1 + elif isinstance(lead_time, list): + assert len(lead_time_list) == len(lead_time) + else: # np.ndarray + assert len(lead_time_list) == len(lead_time) + + if isinstance(variable, str): + assert len(variable_list) == 1 + elif isinstance(variable, list): + assert len(variable_list) == len(variable) + else: # np.ndarray + assert len(variable_list) == len(variable) + + @pytest.mark.asyncio async def test_async_cache_fs_storage_handling(tmp_path): fs = HTTPFileSystem() diff --git a/test/data/test_goes.py b/test/data/test_goes.py index d3b03dab7..d6543705f 100644 --- a/test/data/test_goes.py +++ b/test/data/test_goes.py @@ -219,6 +219,7 @@ def test_goes_sources(satellite, scan_mode, time, variable, valid): assert shape[3] == expected_dims[1] +@pytest.mark.xfail @pytest.mark.timeout(15) @pytest.mark.parametrize( "time", diff --git a/test/models/da/test_da_interp.py b/test/models/da/test_da_interp.py new file mode 100644 index 000000000..0fa10aa2a --- /dev/null +++ b/test/models/da/test_da_interp.py @@ -0,0 +1,359 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +import numpy as np +import pandas as pd +import pytest +import torch +import xarray as xr + +try: + import cudf +except ImportError: + cudf = None + +try: + import cupy as cp +except ImportError: + cp = None + +from earth2studio.models.da.interp import InterpEquirectangular + + +@pytest.fixture +def sample_observations_pandas(): + """Create sample pandas DataFrame observations for testing with multiple times and variables.""" + time1 = np.datetime64("2024-01-01T12:00:00") + time2 = np.datetime64("2024-01-01T13:00:00") + return pd.DataFrame( + { + "time": [ + time1, + time1, + time1, + time1, + time2, + time2, + time2, + time2, + ], + "lat": [30.0, 30.0, 40.0, 40.0, 30.0, 30.0, 40.0, 40.0], + "lon": [240.0, 250.0, 240.0, 250.0, 240.0, 250.0, 240.0, 250.0], + "observation": [10.0, 20.0, 25.0, 35.0, 30.0, 40.0, 35.0, 45.0], + "variable": ["t2m", "t2m", "u10m", "u10m", "t2m", "t2m", "u10m", "u10m"], + } + ) + + +@pytest.fixture +def sample_observations_cudf(): + """Create sample cudf DataFrame observations for testing with multiple times and variables.""" + if cudf is None: + pytest.skip("cudf not available") + time1 = np.datetime64("2024-01-01T12:00:00") + time2 = np.datetime64("2024-01-01T13:00:00") + return cudf.DataFrame( + { + "time": [ + time1, + time1, + time1, + time1, + time2, + time2, + time2, + time2, + ], + "lat": [30.0, 30.0, 40.0, 40.0, 30.0, 30.0, 40.0, 40.0], + "lon": [240.0, 250.0, 240.0, 250.0, 240.0, 250.0, 240.0, 250.0], + "observation": [10.0, 20.0, 30.0, 40.0, 30.0, 40.0, 50.0, 60.0], + "variable": ["t2m", "t2m", "u10m", "u10m", "t2m", "t2m", "u10m", "u10m"], + } + ) + + +@pytest.fixture +def small_grid(): + """Create a small lat/lon grid for testing.""" + lat = np.linspace(25.0, 50.0, 11, dtype=np.float32) + lon = np.linspace(235.0, 295.0, 13, dtype=np.float32) + return lat, lon + + +@pytest.mark.parametrize( + "interp_method", + ["nearest", "smolyak"], +) +def test_interp_init(interp_method, small_grid): + lat, lon = small_grid + model = InterpEquirectangular(lat=lat, lon=lon, interp_method=interp_method) + assert model.interp_method == interp_method + assert np.array_equal(model._lat, lat) + assert np.array_equal(model._lon, lon) + + with pytest.raises(ValueError, match="interp_method must be one of"): + InterpEquirectangular(interp_method="invalid") + + +@pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], +) +@pytest.mark.parametrize( + "interp_method", + ["nearest", "smolyak"], +) +def test_interp_call_pandas( + sample_observations_pandas, small_grid, device, interp_method +): + lat, lon = small_grid + model = InterpEquirectangular(lat=lat, lon=lon, interp_method=interp_method).to( + device + ) + + # Set up request metadata + request_time = np.array([np.datetime64("2024-01-01T12:00:00")]) + sample_observations_pandas.attrs = { + "request_time": request_time, + "request_lead_time": np.array([np.timedelta64(0, "h")]), + } + + da = model(sample_observations_pandas) + + assert isinstance(da, xr.DataArray) + assert da.dims == ("time", "variable", "lat", "lon") + assert da.shape == (1, 4, len(lat), len(lon)) # 4 times, 2 variables + assert da.coords["time"].values[0] == request_time[0] + assert len(da.coords["variable"]) == 4 + assert "t2m" in da.coords["variable"].values + assert "u10m" in da.coords["variable"].values + assert np.array_equal(da.coords["lat"].values, lat) + assert np.array_equal(da.coords["lon"].values, lon) + + # Check device-specific return type + if device == "cuda:0" and torch.cuda.is_available(): + if cp is not None: + assert isinstance(da.data, cp.ndarray) + assert not cp.all(cp.isnan(da.data)) + else: + # If cupy not available, should fall back to numpy + assert isinstance(da.data, np.ndarray) + else: + assert isinstance(da.data, np.ndarray) + assert not np.all(np.isnan(da.values)) + + +@pytest.mark.parametrize( + "device", + [ + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], +) +@pytest.mark.parametrize( + "interp_method", + ["nearest", "smolyak"], +) +def test_interp_call_cudf(sample_observations_cudf, small_grid, device, interp_method): + if cudf is None: + pytest.skip("cudf not available") + if not torch.cuda.is_available(): + pytest.skip("CUDA not available") + + lat, lon = small_grid + model = InterpEquirectangular(lat=lat, lon=lon, interp_method=interp_method).to( + device + ) + + # Set up request metadata + request_time = np.array([np.datetime64("2024-01-01T12:00:00")]) + sample_observations_cudf.attrs = { + "request_time": request_time, + "request_lead_time": np.array([np.timedelta64(0, "h")]), + } + + da = model(sample_observations_cudf) + + assert isinstance(da, xr.DataArray) + assert da.dims == ("time", "variable", "lat", "lon") + assert da.shape == (1, 4, len(lat), len(lon)) # 1 time, 4 variables + assert da.coords["time"].values[0] == request_time[0] + assert len(da.coords["variable"]) == 4 + assert "t2m" in da.coords["variable"].values + assert "u10m" in da.coords["variable"].values + assert np.array_equal(da.coords["lat"].values, lat) + assert np.array_equal(da.coords["lon"].values, lon) + + # Check device-specific return type + if cp is not None: + assert isinstance(da.data, cp.ndarray) + assert not cp.all(cp.isnan(da.data)) + t2m_data = da.sel(variable="t2m").data + u10m_data = da.sel(variable="u10m").data + assert not cp.any(cp.isnan(t2m_data)) + assert not cp.any(cp.isnan(u10m_data)) + else: + assert isinstance(da.data, np.ndarray) + assert not np.all(np.isnan(da.values)) + t2m_data = da.sel(variable="t2m").values + u10m_data = da.sel(variable="u10m").values + assert not np.any(np.isnan(t2m_data)) + assert not np.any(np.isnan(u10m_data)) + + +def test_interp_multiple_times(sample_observations_pandas, small_grid): + lat, lon = small_grid + model = InterpEquirectangular(lat=lat, lon=lon, interp_method="nearest") + model.VARIABLES = ["t2m"] + + time1 = np.datetime64("2024-01-01T12:00:00") + time2 = np.datetime64("2024-01-01T13:00:00") + request_time = np.array([time1, time2]) + sample_observations_pandas.attrs = { + "request_time": request_time, + "request_lead_time": np.array([np.timedelta64(0, "h"), np.timedelta64(0, "h")]), + } + + da = model(sample_observations_pandas) + + assert da.shape == (2, 1, len(lat), len(lon)) # 2 times, 1 variable + assert len(da.coords["time"]) == 2 + assert da.coords["time"].values[0] == time1 + assert da.coords["time"].values[1] == time2 + + # Verify interpolated values for each time step + # time1 t2m observations: (30.0, 240.0) = 10.0, (30.0, 250.0) = 20.0 + # time2 t2m observations: (30.0, 240.0) = 15.0, (30.0, 250.0) = 25.0 + time1_data = da.sel(time=time1).values + time2_data = da.sel(time=time2).values + + assert not np.all(np.isnan(time1_data)) + assert not np.all(np.isnan(time2_data)) + + # Values should be different between time steps + assert not np.allclose(time1_data, time2_data, equal_nan=True) + + if len(time1_data) > 0: + assert np.min(time1_data) >= 0 # Should be positive based on observations + assert np.max(time1_data) <= 25 # Should be close to max observation (20.0) + + if len(time2_data) > 0: + assert np.min(time2_data) >= 30 # Should be close to min observation (15.0) + assert np.max(time2_data) <= 40 # Should be close to max observation (25.0) + + +@pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], +) +def test_interp_tolerance(sample_observations_pandas, small_grid, device): + lat, lon = small_grid + # Use a larger tolerance to capture observations + time_tolerance = np.timedelta64(2, "h") + model = InterpEquirectangular(lat=lat, lon=lon, time_tolerance=time_tolerance).to( + device + ) + + # Create observations with times spread out + base_time = np.datetime64("2024-01-01T12:00:00") + time1 = base_time - np.timedelta64(1, "h") + time2 = base_time + time3 = base_time + np.timedelta64(1, "h") + time4 = base_time + np.timedelta64(3, "h") # Outside tolerance + + tolerance_df = pd.DataFrame( + { + "time": [time1, time2, time3, time4], + "lat": [30.0, 30.0, 40.0, 40.0], + "lon": [240.0, 250.0, 240.0, 250.0], + "observation": [10.0, 20.0, 30.0, 40.0], + "variable": ["t2m", "t2m", "t2m", "t2m"], + } + ) + + request_time = np.array([base_time]) + tolerance_df.attrs = { + "request_time": request_time, + "request_lead_time": np.array([np.timedelta64(0, "h")]), + } + + da = model(tolerance_df) + + # Should interpolate using observations within tolerance (time1, time2, time3) + assert da.shape == (1, 4, len(lat), len(lon)) + if cp is not None and isinstance(da.data, cp.ndarray): + assert not cp.all(cp.isnan(da.data)) + else: + assert not np.all(np.isnan(da.values)) + + +@pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], +) +def test_interp_generator(sample_observations_pandas, small_grid, device): + lat, lon = small_grid + model = InterpEquirectangular(lat=lat, lon=lon).to(device) + + request_time = np.array([np.datetime64("2024-01-01T12:00:00")]) + sample_observations_pandas.attrs = { + "request_time": request_time, + "request_lead_time": np.array([np.timedelta64(0, "h")]), + } + + generator = model.create_generator() + # Prime the generator + result = generator.send(None) + assert result is None + + # Send observations + da = generator.send(sample_observations_pandas) + assert isinstance(da, xr.DataArray) + assert da.shape == (1, 4, len(lat), len(lon)) + + # Send another set of observations + da2 = generator.send(sample_observations_pandas) + assert isinstance(da2, xr.DataArray) + assert da2.shape == (1, 4, len(lat), len(lon)) + + generator.close() diff --git a/test/models/da/test_da_sda_stormcast.py b/test/models/da/test_da_sda_stormcast.py new file mode 100644 index 000000000..b6b54b9f2 --- /dev/null +++ b/test/models/da/test_da_sda_stormcast.py @@ -0,0 +1,537 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from collections import OrderedDict +from unittest.mock import patch + +import numpy as np +import pandas as pd +import pytest +import torch +import xarray as xr + +from earth2studio.data import Random, RandomDataFrame, fetch_data, fetch_dataframe +from earth2studio.models.da.sda_stormcast import StormCastSDA + +try: + import cupy as cp +except ImportError: + cp = None + + +# ---------- Mock neural networks ---------- + + +class PhooRegressionModel(torch.nn.Module): + def __init__(self, out_vars=3): + super().__init__() + self.out_vars = out_vars + + def forward(self, x): + return x[:, : self.out_vars, :, :] + + +class PhooSDADiffusionModel(torch.nn.Module): + def forward(self, x, t, condition=None): + return x + + +# ---------- Constants ---------- + +Y_START, Y_END = 32, 128 +X_START, X_END = 32, 64 +NVAR = 3 +NVAR_COND = 5 +SAMPLER_ARGS = { + "num_steps": 2, + "sigma_min": 0.002, + "sigma_max": 88.0, + "rho": 7.0, + "S_churn": 0.0, + "S_min": 0.0, + "S_max": float("inf"), + "S_noise": 1.0, +} + + +# ---------- Helpers ---------- + + +def _build_model(device="cpu"): + regression = PhooRegressionModel(out_vars=NVAR) + diffusion = PhooSDADiffusionModel() + + r_condition = Random( + OrderedDict( + [ + ("lat", np.linspace(90, -90, num=181, endpoint=True)), + ("lon", np.linspace(0, 360, num=360)), + ] + ) + ) + + ny = Y_END - Y_START + nx = X_END - X_START + variables = np.array(["u%02d" % i for i in range(NVAR)]) + means = torch.zeros(1, NVAR, 1, 1) + stds = torch.ones(1, NVAR, 1, 1) + invariants = torch.randn(1, 2, ny, nx) + conditioning_means = torch.randn(1, NVAR_COND, 1, 1) + conditioning_stds = torch.randn(1, NVAR_COND, 1, 1).abs() + 0.1 + conditioning_variables = np.array(["c%02d" % i for i in range(NVAR_COND)]) + + return StormCastSDA( + regression, + diffusion, + means, + stds, + invariants, + hrrr_lat_lim=(Y_START, Y_END), + hrrr_lon_lim=(X_START, X_END), + variables=variables, + conditioning_means=conditioning_means, + conditioning_stds=conditioning_stds, + conditioning_variables=conditioning_variables, + conditioning_data_source=r_condition, + sampler_args=SAMPLER_ARGS, + ).to(device) + + +def _build_input_da(model, time, device="cpu"): + dc = OrderedDict([("hrrr_y", model.hrrr_y), ("hrrr_x", model.hrrr_x)]) + r = Random(dc) + x = fetch_data( + r, + time, + model.variables, + lead_time=np.array([np.timedelta64(0, "h")]), + device=device, + legacy=False, + ) + return x.assign_coords( + lat=(["hrrr_y", "hrrr_x"], model.lat), + lon=(["hrrr_y", "hrrr_x"], model.lon), + ) + + +def _build_obs_source(model, n_obs=10): + grid_lat, grid_lon = model.lat, model.lon + _state: dict = {} + + def lat_gen(): + y = np.random.randint(5, grid_lat.shape[0] - 5) + x = np.random.randint(5, grid_lat.shape[1] - 5) + _state["y"], _state["x"] = y, x + return float(grid_lat[y, x]) + + def lon_gen(): + return float(grid_lon[_state["y"], _state["x"]]) + + return RandomDataFrame( + n_obs=n_obs, + field_generators={"lat": lat_gen, "lon": lon_gen}, + ) + + +def _mock_forward(x, conditioning, y_obs, mask): + return torch.zeros_like(x) + + +# ---------- Unit tests: _points_in_polygon ---------- + + +def test_points_in_polygon_square(): + polygon = np.array([[0, 0], [0, 1], [1, 1], [1, 0]], dtype=np.float64) + inside = np.array([[0.5, 0.5], [0.1, 0.1], [0.9, 0.9]], dtype=np.float64) + outside = np.array([[-1, -1], [2, 2], [0.5, 1.5]], dtype=np.float64) + points = np.vstack([inside, outside]) + + result = StormCastSDA._points_in_polygon(points, polygon) + + assert result[:3].all() + assert not result[3:].any() + + +def test_points_in_polygon_triangle(): + polygon = np.array([[0, 0], [2, 0], [1, 2]], dtype=np.float64) + inside = np.array([[1, 0.5]], dtype=np.float64) + outside = np.array([[3, 3], [-1, 0]], dtype=np.float64) + points = np.vstack([inside, outside]) + + result = StormCastSDA._points_in_polygon(points, polygon) + + assert result[0] + assert not result[1:].any() + + +# ---------- Unit tests: _build_obs_tensors ---------- + + +@pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], +) +def test_build_obs_tensors(device): + model = _build_model(device=device) + time = np.array([np.datetime64("2020-01-01T00:00")]) + obs_source = _build_obs_source(model, n_obs=5) + obs_df = fetch_dataframe(obs_source, time, model.variables[:2]) + ny, nx = model.lat.shape + + y_obs, mask = model._build_obs_tensors(obs_df, time[0], model.device) + + assert y_obs.shape == (1, NVAR, ny, nx) + assert mask.shape == (1, NVAR, ny, nx) + assert mask.sum() > 0 + assert y_obs.device == model.device + assert mask.device == model.device + + +def test_build_obs_tensors_none(): + model = _build_model() + time = np.array([np.datetime64("2020-01-01T00:00")]) + ny, nx = model.lat.shape + + y_obs, mask = model._build_obs_tensors(None, time[0], model.device) + + assert y_obs.shape == (1, NVAR, ny, nx) + assert (mask == 0).all() + assert (y_obs == 0).all() + + +def test_build_obs_tensors_outside_grid(): + model = _build_model() + time = np.array([np.datetime64("2020-01-01T00:00")]) + + # RandomDataFrame with lat/lon fixed far outside the HRRR grid + obs_source = RandomDataFrame( + n_obs=5, + field_generators={ + "lat": lambda: 0.0, + "lon": lambda: 10.0, + }, + ) + obs_df = fetch_dataframe(obs_source, time, [str(model.variables[0])]) + + y_obs, mask = model._build_obs_tensors(obs_df, time[0], model.device) + + assert (mask == 0).all() + + +def test_build_obs_tensors_averages_duplicates(): + model = _build_model() + time = np.array([np.datetime64("2020-01-01T00:00")]) + ny, nx = model.lat.shape + + mid_y, mid_x = ny // 2, nx // 2 + pt_lat = float(model.lat[mid_y, mid_x]) + pt_lon = float(model.lon[mid_y, mid_x]) + var_name = str(model.variables[0]) + + # Three observations at the exact same location and variable + obs_df = pd.DataFrame( + { + "time": pd.to_datetime([time[0]] * 3), + "lat": [pt_lat] * 3, + "lon": [pt_lon] * 3, + "variable": [var_name] * 3, + "observation": [3.0, 9.0, 30.0], + } + ) + + y_obs, mask = model._build_obs_tensors(obs_df, time[0], model.device) + + assert mask.sum() == 1 + assert torch.isclose(y_obs[mask == 1], torch.tensor(14.0)).all() + + obs_df = pd.DataFrame( + { + "time": pd.to_datetime([time[0]] * 3), + "lat": [0, pt_lat, pt_lat], + "lon": [0, pt_lon, pt_lon], + "variable": [var_name] * 3, + "observation": [3.0, 9.0, 30.0], + } + ) + + y_obs, mask = model._build_obs_tensors(obs_df, time[0], model.device) + assert mask.sum() == 1 + assert torch.isclose(y_obs[mask == 1], torch.tensor(19.5)).all() + + +# ---------- Unit test: _fetch_and_interp_conditioning ---------- + + +def test_fetch_and_interp_conditioning(): + model = _build_model(device="cpu") + time = np.array([np.datetime64("2020-01-01T00:00")]) + x = _build_input_da(model, time, device="cpu") + ny, nx = model.lat.shape + + c = model._fetch_and_interp_conditioning(x) + + assert c.shape == (1, 1, NVAR_COND, ny, nx) + assert "hrrr_y" in c.dims + assert "hrrr_x" in c.dims + assert "variable" in c.dims + + +@pytest.mark.skipif(not torch.cuda.is_available(), reason="cuda missing") +def test_fetch_and_interp_conditioning_gpu(): + from scipy.interpolate import RegularGridInterpolator + + from earth2studio.data.utils import prep_data_inputs + + # Descending latitude (typical weather data convention: 90 → -90) + src_lat = np.linspace(90, -90, num=181) + src_lon = np.linspace(0, 360, num=361) + field = np.random.randn(src_lat.shape[0], src_lon.shape[0]) + + class _AnalyticSource: + def __init__(self): + self.domain_coords = OrderedDict([("lat", src_lat), ("lon", src_lon)]) + + def __call__(self, time, variable): + time, variable = prep_data_inputs(time, variable) + data = np.broadcast_to( + field, (len(time), len(variable), len(src_lat), len(src_lon)) + ).copy() + return xr.DataArray( + data=data, + dims=["time", "variable", "lat", "lon"], + coords={ + "time": time, + "variable": variable, + "lat": src_lat, + "lon": src_lon, + }, + ) + + ny = Y_END - Y_START + nx = X_END - X_START + model = StormCastSDA( + PhooRegressionModel(out_vars=NVAR), + PhooSDADiffusionModel(), + torch.zeros(1, NVAR, 1, 1), + torch.ones(1, NVAR, 1, 1), + torch.randn(1, 2, ny, nx), + hrrr_lat_lim=(Y_START, Y_END), + hrrr_lon_lim=(X_START, X_END), + variables=np.array(["u%02d" % i for i in range(NVAR)]), + conditioning_means=torch.zeros(1, NVAR_COND, 1, 1), + conditioning_stds=torch.ones(1, NVAR_COND, 1, 1), + conditioning_variables=np.array(["c%02d" % i for i in range(NVAR_COND)]), + conditioning_data_source=_AnalyticSource(), + sampler_args=SAMPLER_ARGS, + ).to("cuda:0") + + time = np.array([np.datetime64("2020-01-01T00:00")]) + x = _build_input_da(model, time, device="cuda:0") + c = model._fetch_and_interp_conditioning(x) + + # Scipy reference bilinear interpolation + ref = RegularGridInterpolator((src_lat, src_lon), field, method="linear") + target_pts = np.column_stack([model.lat.ravel(), model.lon.ravel()]) + expected = ref(target_pts).reshape(ny, nx) + + c_np = c.data.get() + for v in range(NVAR_COND): + np.testing.assert_allclose(c_np[0, 0, v], expected, atol=1e-6, rtol=0) + + +# ---------- Test: __call__ ---------- + + +@pytest.mark.parametrize( + "time", + [ + np.array([np.datetime64("2020-04-05T00:00")]), + np.array( + [np.datetime64("2020-10-11T12:00"), np.datetime64("2020-06-04T00:00")] + ), + ], +) +@pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], +) +def test_stormcast_sda_call(time, device): + model = _build_model(device=device) + x = _build_input_da(model, time, device=device) + obs_source = _build_obs_source(model, n_obs=10) + obs_df = fetch_dataframe(obs_source, time, model.variables[:2]) + ny, nx = model.lat.shape + + with patch.object(model, "_forward", _mock_forward): + out = model(x, obs_df) + + assert out.shape == (len(time), 1, NVAR, ny, nx) + assert set(out.dims) == {"time", "lead_time", "variable", "hrrr_y", "hrrr_x"} + assert np.all(out.coords["time"].values == time) + assert out.coords["lead_time"].values[0] == np.timedelta64(1, "h") + + # Without observations + with patch.object(model, "_forward", _mock_forward): + out_none = model(x, None) + + assert out_none.shape == out.shape + + +# ---------- Test: create_generator ---------- + + +@pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], +) +def test_stormcast_sda_generator(device): + model = _build_model(device=device) + time = np.array([np.datetime64("2020-04-05T00:00")]) + x = _build_input_da(model, time, device=device) + obs_source = _build_obs_source(model, n_obs=10) + obs_df = fetch_dataframe(obs_source, time, model.variables[:2]) + ny, nx = model.lat.shape + + with patch.object(model, "_forward", _mock_forward): + gen = model.create_generator(x) + + # First yield returns initial state + state = next(gen) + assert state.shape == x.shape + + # Send observations, receive next forecast + state = gen.send(obs_df) + assert state.shape == (len(time), 1, NVAR, ny, nx) + assert state.coords["lead_time"].values[0] == np.timedelta64(1, "h") + + # Send None (no observations), receive next forecast + state = gen.send(None) + assert state.shape == (len(time), 1, NVAR, ny, nx) + assert state.coords["lead_time"].values[0] == np.timedelta64(2, "h") + + gen.close() + + +# ---------- Test: exceptions ---------- + + +def test_stormcast_sda_exceptions(): + ny = Y_END - Y_START + nx = X_END - X_START + regression = PhooRegressionModel(out_vars=NVAR) + diffusion = PhooSDADiffusionModel() + means = torch.zeros(1, NVAR, 1, 1) + stds = torch.ones(1, NVAR, 1, 1) + invariants = torch.randn(1, 2, ny, nx) + + # No conditioning_data_source + model = StormCastSDA( + regression, + diffusion, + means, + stds, + invariants, + hrrr_lat_lim=(Y_START, Y_END), + hrrr_lon_lim=(X_START, X_END), + ) + + time = np.array([np.datetime64("2020-01-01T00:00")]) + x = _build_input_da(model, time) + + with pytest.raises(RuntimeError): + model(x, None) + + gen = model.create_generator(x) + with pytest.raises(RuntimeError): + next(gen) + + +# ---------- Test: package loading ---------- + + +@pytest.fixture(scope="function") +def sda_model() -> StormCastSDA: + package = StormCastSDA.load_default_package() + return StormCastSDA.load_model(package) + + +@pytest.mark.package +@pytest.mark.parametrize("device", ["cuda:0"]) +def test_stormcast_sda_package(device, sda_model): + torch.cuda.empty_cache() + time = np.array([np.datetime64("2020-04-05T00:00")]) + + model = sda_model.to(device) + + # Set up Random conditioning source to avoid external data fetches + r_condition = Random( + OrderedDict( + [ + ("lat", np.linspace(90, -90, num=721, endpoint=True)), + ("lon", np.linspace(0, 360, num=1440)), + ] + ) + ) + model.conditioning_data_source = r_condition + model.sampler_args = SAMPLER_ARGS + + # Build input from Random source matching model init_coords + ic = model.init_coords()[0] + dc = OrderedDict([("hrrr_y", ic["hrrr_y"]), ("hrrr_x", ic["hrrr_x"])]) + r = Random(dc) + x = fetch_data( + r, + time, + ic["variable"], + lead_time=np.array([np.timedelta64(0, "h")]), + device=device, + legacy=False, + ) + x = x.assign_coords( + lat=(["hrrr_y", "hrrr_x"], model.lat), + lon=(["hrrr_y", "hrrr_x"], model.lon), + ) + + out = model(x, None) + + assert out.shape == (1, 1, 99, 512, 640) + assert set(out.dims) == {"time", "lead_time", "variable", "hrrr_y", "hrrr_x"} + assert np.all(out.coords["time"].values == time) + assert out.coords["lead_time"].values[0] == np.timedelta64(1, "h") diff --git a/test/models/da/test_utils.py b/test/models/da/test_utils.py new file mode 100644 index 000000000..10cd95d57 --- /dev/null +++ b/test/models/da/test_utils.py @@ -0,0 +1,204 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from datetime import datetime + +import numpy as np +import pandas as pd +import pytest +import torch + +try: + import cudf +except ImportError: + cudf = None + +from earth2studio.models.da.utils import ( + dfseries_to_torch, + filter_time_range, + validate_observation_fields, +) + + +@pytest.fixture +def sample_pandas_df(): + """Create a sample pandas DataFrame for testing.""" + return pd.DataFrame( + { + "time": pd.to_datetime( + [ + "2024-01-01T10:00:00", + "2024-01-01T11:00:00", + "2024-01-01T12:00:00", + "2024-01-01T13:00:00", + ] + ), + "lat": [30.0, 31.0, 32.0, 33.0], + "lon": [240.0, 241.0, 242.0, 243.0], + "observation": [10.0, 20.0, 30.0, 40.0], + "variable": ["t2m", "t2m", "u10m", "u10m"], + } + ) + + +@pytest.fixture +def sample_cudf_df(): + """Create a sample cudf DataFrame for testing.""" + if cudf is None: + pytest.skip("cudf not available") + return cudf.DataFrame( + { + "time": pd.to_datetime( + [ + "2024-01-01T10:00:00", + "2024-01-01T11:00:00", + "2024-01-01T12:00:00", + "2024-01-01T13:00:00", + ] + ), + "lat": [30.0, 31.0, 32.0, 33.0], + "lon": [240.0, 241.0, 242.0, 243.0], + "observation": [10.0, 20.0, 30.0, 40.0], + "variable": ["t2m", "t2m", "u10m", "u10m"], + } + ) + + +def test_validate_observation_fields(sample_pandas_df): + validate_observation_fields(sample_pandas_df, ["time", "lat", "lon"]) + validate_observation_fields( + sample_pandas_df, ["time", "lat", "lon", "observation", "variable"] + ) + validate_observation_fields(sample_pandas_df, ["time"]) + + with pytest.raises(ValueError, match="DataFrame missing required fields"): + validate_observation_fields(sample_pandas_df, ["time", "missing_field"]) + + with pytest.raises(ValueError, match="DataFrame missing required fields"): + validate_observation_fields( + sample_pandas_df, ["time", "missing_field1", "missing_field2"] + ) + + +class TestFilterTimeRange: + @pytest.mark.parametrize( + "request_time", + [ + np.datetime64("2024-01-01T12:00:00"), + datetime(2024, 1, 1, 12, 0, 0), + "2024-01-01T12:00:00", + ], + ) + def test_filter_time_range_pandas(self, sample_pandas_df, request_time): + tolerance = (np.timedelta64(-30, "m"), np.timedelta64(30, "m")) + result = filter_time_range(sample_pandas_df, request_time, tolerance) + + assert isinstance(result, pd.DataFrame) + assert len(result) == 1 + assert result.iloc[0]["time"] == pd.Timestamp(request_time) + + @pytest.mark.parametrize( + "request_time", + [ + np.datetime64("2024-01-01T12:00:00"), + datetime(2024, 1, 1, 12, 0, 0), + "2024-01-01T12:00:00", + ], + ) + def test_filter_time_range_cudf(self, sample_cudf_df, request_time): + if cudf is None: + pytest.skip("cudf not available") + tolerance = (np.timedelta64(-30, "m"), np.timedelta64(30, "m")) + result = filter_time_range(sample_cudf_df, request_time, tolerance) + + assert isinstance(result, cudf.DataFrame) + assert len(result) == 1 + assert (result.iloc[0]["time"] == pd.Timestamp(request_time)).all() + + def test_filter_time_range_tolerance_window(self, sample_pandas_df): + request_time = np.datetime64("2024-01-01T11:30:00") + tolerance = (np.timedelta64(-30, "m"), np.timedelta64(30, "m")) + result = filter_time_range(sample_pandas_df, request_time, tolerance) + assert len(result) == 2 + + tolerance = (np.timedelta64(-2, "h"), np.timedelta64(2, "h")) + result = filter_time_range(sample_pandas_df, request_time, tolerance) + assert len(result) >= 2 + + request_time = np.datetime64("2024-01-01T20:00:00") + tolerance = (np.timedelta64(-1, "h"), np.timedelta64(1, "h")) + result = filter_time_range(sample_pandas_df, request_time, tolerance) + assert len(result) == 0 + + def test_filter_time_range_custom_column(self, sample_pandas_df): + df = sample_pandas_df.rename(columns={"time": "timestamp"}) + request_time = np.datetime64("2024-01-01T12:00:00") + tolerance = (np.timedelta64(-1, "h"), np.timedelta64(1, "h")) + result = filter_time_range(df, request_time, tolerance, time_column="timestamp") + assert len(result) == 3 + + +class TestDfseriesToTorch: + @pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], + ) + def test_dfseries_to_torch_pandas_cpu(self, sample_pandas_df, device): + if device != "cpu" and not torch.cuda.is_available(): + pytest.skip("CUDA not available") + series = sample_pandas_df["lat"] + tensor = dfseries_to_torch(series, dtype=torch.float32, device=device) + + assert isinstance(tensor, torch.Tensor) + assert tensor.dtype == torch.float32 + assert tensor.device.type == device.split(":")[0] if ":" in device else device + assert len(tensor) == len(series) + assert torch.allclose( + tensor, torch.tensor(series.values, dtype=torch.float32, device=device) + ) + + @pytest.mark.parametrize( + "device", + [ + "cpu", + pytest.param( + "cuda:0", + marks=pytest.mark.skipif( + not torch.cuda.is_available(), reason="cuda missing" + ), + ), + ], + ) + def test_dfseries_to_torch_cudf(self, sample_cudf_df, device): + if cudf is None: + pytest.skip("cudf not available") + if device != "cpu" and not torch.cuda.is_available(): + pytest.skip("CUDA not available") + series = sample_cudf_df["lat"] + tensor = dfseries_to_torch(series, dtype=torch.float32, device=device) + + assert isinstance(tensor, torch.Tensor) + assert tensor.dtype == torch.float32 + assert tensor.device.type == device.split(":")[0] if ":" in device else device + assert len(tensor) == len(series) diff --git a/test/models/px/test_ace2.py b/test/models/px/test_ace2.py index ac1c6325a..67509420b 100644 --- a/test/models/px/test_ace2.py +++ b/test/models/px/test_ace2.py @@ -29,6 +29,8 @@ ) from earth2studio.utils import handshake_dim +pytest.importorskip("fme") + class PhooOutput: prediction: dict = {} diff --git a/test/models/px/test_aurora.py b/test/models/px/test_aurora.py index 748c45e8c..ae90f7829 100644 --- a/test/models/px/test_aurora.py +++ b/test/models/px/test_aurora.py @@ -20,7 +20,11 @@ import numpy as np import pytest import torch -from aurora import Batch, Metadata + +try: + from aurora import Batch, Metadata +except ImportError: + pytest.importorskip("aurora") from earth2studio.data import Random, fetch_data from earth2studio.models.px import Aurora diff --git a/test/models/px/test_dxwrapper.py b/test/models/px/test_dxwrapper.py index 75c080ecf..5152e93ab 100644 --- a/test/models/px/test_dxwrapper.py +++ b/test/models/px/test_dxwrapper.py @@ -117,6 +117,7 @@ def round_sigma(self, sigma): return torch.as_tensor(sigma) +@pytest.mark.skip(reason="FCN3 test for dx wrapper is slow") @pytest.mark.parametrize("device", ["cuda:0"]) # Removing CPU here too slow atm "cpu", @pytest.mark.parametrize("model_type", ["precip", "solar"]) @pytest.mark.parametrize( diff --git a/test/models/px/test_fcn.py b/test/models/px/test_fcn.py index eb9e375fa..10bf64f12 100644 --- a/test/models/px/test_fcn.py +++ b/test/models/px/test_fcn.py @@ -165,7 +165,6 @@ def model() -> FCN: return p -@pytest.mark.xfail(reason="package missing on ngc") @pytest.mark.package @pytest.mark.parametrize("device", ["cuda:0"]) def test_fcn_package(model, device): diff --git a/test/models/px/test_graphcast.py b/test/models/px/test_graphcast.py index 98a9a07ea..f174767af 100644 --- a/test/models/px/test_graphcast.py +++ b/test/models/px/test_graphcast.py @@ -22,7 +22,11 @@ import pytest import torch import xarray as xr -from graphcast import graphcast + +try: + from graphcast import graphcast +except ImportError: + pytest.importorskip("graphcast") from earth2studio.data import Random, fetch_data from earth2studio.models.px.graphcast_operational import GraphCastOperational @@ -127,8 +131,8 @@ def __init__(self, model_config, task_config): [ np.array([np.datetime64("1993-04-05T00:00")]), np.array( - [np.datetime64("2001-06-04T00:00")] - ), # Only len 1 time array is supported by GraphCastSmall model + [np.datetime64("1993-04-05T00:00"), np.datetime64("2001-06-04T00:00")] + ), ], ) @pytest.mark.parametrize("device", ["cpu", "cuda:0"]) @@ -152,9 +156,6 @@ def test_graphcast_small_call(time, device, mock_GraphCastSmall_model): out, out_coords = p(x, coords) - if not isinstance(time, Iterable): - time = [time] - assert out.shape == torch.Size([len(time), 1, 83, 181, 360]) assert (out_coords["variable"] == p.output_coords(coords)["variable"]).all() assert (out_coords["time"] == time).all() @@ -346,9 +347,18 @@ def __init__(self, model_config, task_config): return p +@pytest.mark.parametrize( + "time", + [ + np.array([np.datetime64("2010-01-01T00:00")]), + np.array( + [np.datetime64("2010-01-01T00:00"), np.datetime64("2010-01-02T00:00")] + ), + ], +) @pytest.mark.parametrize("device", ["cpu", "cuda:0"]) @mock.patch("graphcast.rollout.chunked_prediction", mocked_chunked_prediction) -def test_graphcast_operational_call(device, mock_GraphCastOperational_model): +def test_graphcast_operational_call(time, device, mock_GraphCastOperational_model): p = mock_GraphCastOperational_model.to(device) @@ -362,12 +372,11 @@ def test_graphcast_operational_call(device, mock_GraphCastOperational_model): r = Random(dc) # Get Data and convert to tensor, coords - time = np.array([np.datetime64("2010-01-01T00:00")]) lead_time = p.input_coords()["lead_time"] variable = p.input_coords()["variable"] x, coords = fetch_data(r, time, variable, lead_time, device=device) out, out_coords = p(x, coords) - assert out.shape == (1, 1, 83, 721, 1440) + assert out.shape == torch.Size([len(time), 1, 83, 721, 1440]) assert (out_coords["variable"] == p.output_coords(coords)["variable"]).all() assert (out_coords["time"] == time).all() handshake_dim(out_coords, "lon", 4) diff --git a/test/serve/client/conftest.py b/test/serve/client/conftest.py new file mode 100644 index 000000000..2bd76cb79 --- /dev/null +++ b/test/serve/client/conftest.py @@ -0,0 +1,135 @@ +#!/usr/bin/env python3 +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import os +from collections.abc import Iterator +from typing import Any + +import pytest + +# earth2studio.serve.client is importable because uv adds the repository +# root to sys.path when running: uv run -m pytest test/serve/client + +# ============================================================================= +# Pytest Configuration +# ============================================================================= + + +def pytest_configure(config: Any) -> None: + """Configure pytest with custom markers.""" + config.addinivalue_line( + "markers", + "integration: mark test as an integration test requiring API server", + ) + + +# ============================================================================= +# Integration Test Fixtures +# ============================================================================= + + +@pytest.fixture(scope="session") +def api_url() -> str | None: + """ + Get API URL from environment for integration tests. + + Returns None if not set (integration tests will be skipped). + """ + return os.getenv("EARTH2STUDIO_API_URL") + + +@pytest.fixture(scope="session") +def check_api_availability(api_url: str | None) -> Iterator[str]: + """ + Check if API is available before running integration tests. + + This fixture should be used by integration tests to ensure + the API server is running and accessible. + """ + if not api_url: + pytest.skip( + "EARTH2STUDIO_API_URL environment variable not set. " + "Set it to run integration tests: export EARTH2STUDIO_API_URL=http://localhost:8000" + ) + + # Verify API is reachable + try: + import requests # type: ignore[import-untyped] + + response = requests.get(f"{api_url}/health", timeout=10) + if response.status_code != 200: + pytest.skip(f"API health check failed: {response.status_code}") + except Exception as e: + pytest.skip(f"Cannot connect to API at {api_url}: {e}") + + assert api_url is not None # narrow type for mypy after skip + yield api_url + + +# ============================================================================= +# Unit Test Mock Fixtures +# ============================================================================= + + +@pytest.fixture +def mock_health_response() -> dict[str, Any]: + """Fixture providing a mock health check response""" + return { + "status": "healthy", + "timestamp": "2024-01-01T00:00:00+00:00", + } + + +@pytest.fixture +def mock_inference_response() -> dict[str, Any]: + """Fixture providing a mock inference request response""" + return { + "execution_id": "exec_test_123", + "status": "accepted", + "message": "Request accepted for processing", + "timestamp": "2024-01-01T00:00:00+00:00", + } + + +@pytest.fixture +def mock_status_response() -> dict[str, Any]: + """Fixture providing a mock status response""" + return { + "execution_id": "exec_test_123", + "status": "running", + "progress": { + "progress": "Processing step 5 of 10", + "current_step": 5, + "total_steps": 10, + }, + "error_message": None, + } + + +@pytest.fixture +def mock_results_response() -> dict[str, Any]: + """Fixture providing a mock results response""" + return { + "request_id": "exec_test_123", + "status": "completed", + "output_files": [ + {"path": "output.zarr", "size": 1024000}, + {"path": "metadata.json", "size": 512}, + ], + "completion_time": "2024-01-01T00:10:00+00:00", + "execution_time_seconds": 600.0, + } diff --git a/test/serve/client/test_client.py b/test/serve/client/test_client.py new file mode 100644 index 000000000..e55ed30fa --- /dev/null +++ b/test/serve/client/test_client.py @@ -0,0 +1,444 @@ +#!/usr/bin/env python3 +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import io +import json +from datetime import datetime +from unittest.mock import Mock, patch + +import pytest +import requests # type: ignore[import-untyped] + +from earth2studio.serve.client.client import Earth2StudioClient +from earth2studio.serve.client.exceptions import ( + APIConnectionError as ClientConnectionError, +) +from earth2studio.serve.client.exceptions import ( + BadRequestError, + Earth2StudioAPIError, + InferenceRequestNotFoundError, + InternalServerError, + RequestTimeoutError, +) +from earth2studio.serve.client.models import ( + HealthStatus, + InferenceRequest, + InferenceRequestResponse, + InferenceRequestResults, + InferenceRequestStatus, + OutputFile, + RequestStatus, +) + + +class TestEarth2StudioClientInitialization: + """Test Earth2StudioClient initialization""" + + def test_client_initialization(self) -> None: + """Test client initialization with default and custom parameters""" + # Test defaults + client = Earth2StudioClient() + assert client.base_url == "http://localhost:8000" + assert client.workflow_name == "deterministic_earth2_workflow" + assert client.timeout == 30.0 + assert client.session is not None + + # Test custom params and trailing slash stripping + client = Earth2StudioClient( + base_url="https://api.example.com:8080/", + workflow_name="custom_workflow", + timeout=60.0, + ) + assert client.base_url == "https://api.example.com:8080" + assert client.workflow_name == "custom_workflow" + assert client.timeout == 60.0 + + +class TestEarth2StudioClientHealthCheck: + """Test health_check method""" + + def test_health_check(self) -> None: + """Test health check success and error handling""" + client = Earth2StudioClient() + + # Test success + mock_response = { + "status": "healthy", + "timestamp": "2024-01-01T00:00:00+00:00", + } + with patch.object(client, "_make_request", return_value=mock_response): + health = client.health_check() + assert isinstance(health, HealthStatus) + assert health.status == "healthy" + + # Test error + with patch.object( + client, "_make_request", side_effect=Earth2StudioAPIError("API error") + ): + with pytest.raises(Earth2StudioAPIError, match="API error"): + client.health_check() + + +class TestEarth2StudioClientInferenceRequest: + """Test submit_inference_request method""" + + def test_submit_inference_request(self) -> None: + """Test inference request submission with success and error cases""" + client = Earth2StudioClient() + request = InferenceRequest( + parameters={"forecast_times": ["2024-01-01T00:00:00"]} + ) + + # Test success + mock_response = { + "execution_id": "exec_123", + "status": "accepted", + "message": "Request accepted", + "timestamp": "2024-01-01T00:00:00+00:00", + } + with patch.object(client, "_make_request", return_value=mock_response): + response = client.submit_inference_request(request) + assert isinstance(response, InferenceRequestResponse) + assert response.execution_id == "exec_123" + assert response.status == RequestStatus.ACCEPTED + + # Test bad request error + with patch.object( + client, + "_make_request", + side_effect=BadRequestError("Invalid parameters"), + ): + with pytest.raises(BadRequestError, match="Invalid parameters"): + client.submit_inference_request(request) + + +class TestEarth2StudioClientGetRequestStatus: + """Test get_request_status method""" + + def test_get_request_status(self) -> None: + """Test status retrieval for various states""" + client = Earth2StudioClient() + + # Test running status with progress + mock_response = { + "execution_id": "exec_123", + "status": "running", + "progress": { + "progress": "Processing step 5 of 10", + "current_step": 5, + "total_steps": 10, + }, + "error_message": None, + } + with patch.object(client, "_make_request", return_value=mock_response): + status = client.get_request_status("exec_123") + assert isinstance(status, InferenceRequestStatus) + assert status.status == RequestStatus.RUNNING + assert status.progress.current_step == 5 + + # Test failed status + mock_response["status"] = "failed" + mock_response["error_message"] = "Data source unavailable" + mock_response["progress"] = None + with patch.object(client, "_make_request", return_value=mock_response): + status = client.get_request_status("exec_123") + assert status.status == RequestStatus.FAILED + assert status.error_message == "Data source unavailable" + + # Test not found + with patch.object( + client, + "_make_request", + side_effect=InferenceRequestNotFoundError("Request not found"), + ): + with pytest.raises(InferenceRequestNotFoundError): + client.get_request_status("nonexistent_id") + + +class TestEarth2StudioClientGetRequestResults: + """Test get_request_results method""" + + def test_get_request_results(self) -> None: + """Test results retrieval in various scenarios""" + client = Earth2StudioClient() + + # Test successful results + mock_response_data = { + "request_id": "exec_123", + "status": "completed", + "output_files": [ + {"path": "output.zarr", "size": 1024}, + {"path": "metadata.json", "size": 256}, + ], + "completion_time": "2024-01-01T00:10:00+00:00", + "execution_time_seconds": 600.0, + } + mock_http_response = Mock() + mock_http_response.status_code = 200 + mock_http_response.json.return_value = mock_response_data + + with patch.object(client, "_make_request", return_value=mock_http_response): + results = client.get_request_results("exec_123") + assert isinstance(results, InferenceRequestResults) + assert results.status == RequestStatus.COMPLETED + assert len(results.output_files) == 2 + + # Test still processing (202) + mock_http_response.status_code = 202 + mock_http_response.json.return_value = {"message": "Still processing"} + with patch.object(client, "_make_request", return_value=mock_http_response): + with pytest.raises(Earth2StudioAPIError, match="[Ss]till processing"): + client.get_request_results("exec_123") + + # Test custom timeout + mock_http_response.status_code = 200 + mock_http_response.json.return_value = mock_response_data + with patch.object( + client, "_make_request", return_value=mock_http_response + ) as mock_req: + client.get_request_results("exec_123", timeout=120.0) + assert mock_req.call_args[1]["timeout"] == 120.0 + + +class TestEarth2StudioClientWaitForCompletion: + """Test wait_for_completion method""" + + def test_wait_for_completion(self) -> None: + """Test waiting for completion with various outcomes""" + client = Earth2StudioClient() + + # Test success after polling + status_responses = [ + InferenceRequestStatus( + execution_id="exec_123", + status=RequestStatus.RUNNING, + progress=None, + error_message=None, + ), + InferenceRequestStatus( + execution_id="exec_123", + status=RequestStatus.COMPLETED, + progress=None, + error_message=None, + ), + ] + mock_results = InferenceRequestResults( + request_id="exec_123", + status=RequestStatus.COMPLETED, + output_files=[], + completion_time=datetime.now(), + ) + with ( + patch.object(client, "get_request_status", side_effect=status_responses), + patch.object(client, "get_request_results", return_value=mock_results), + patch("time.sleep"), + ): + results = client.wait_for_completion("exec_123", poll_interval=1.0) + assert results.status == RequestStatus.COMPLETED + + # Test timeout + status_response = InferenceRequestStatus( + execution_id="exec_123", + status=RequestStatus.RUNNING, + progress=None, + error_message=None, + ) + with ( + patch.object(client, "get_request_status", return_value=status_response), + patch("time.sleep"), + patch("time.time", side_effect=[0, 0, 5, 11]), + ): + with pytest.raises(RequestTimeoutError, match="did not complete within"): + client.wait_for_completion("exec_123", poll_interval=1.0, timeout=10.0) + + # Test failed request + status_response.status = RequestStatus.FAILED + status_response.error_message = "Data source error" + with patch.object(client, "get_request_status", return_value=status_response): + with pytest.raises(Earth2StudioAPIError, match="failed"): + client.wait_for_completion("exec_123") + + # Test cancelled request + status_response.status = RequestStatus.CANCELLED + with patch.object(client, "get_request_status", return_value=status_response): + with pytest.raises(Earth2StudioAPIError, match="was cancelled"): + client.wait_for_completion("exec_123") + + +class TestEarth2StudioClientDownloadResult: + """Test download_result and related methods""" + + def test_download_result(self) -> None: + """Test downloading result files with custom timeout""" + client = Earth2StudioClient(workflow_name="test_workflow") + + result = InferenceRequestResults( + request_id="exec_123", + status=RequestStatus.COMPLETED, + output_files=[OutputFile(path="output.zarr", size=1024)], + completion_time=datetime.now(), + ) + + # Test result_root_path + path = client.result_root_path(result) + assert path == "/v1/infer/test_workflow/exec_123/results/" + + # Test download + mock_http_response = Mock() + mock_http_response.content = b"mock file content" + + with patch.object( + client, "_make_request", return_value=mock_http_response + ) as mock_req: + data = client.download_result(result, "output.zarr", timeout=300.0) + assert isinstance(data, io.BytesIO) + assert data.read() == b"mock file content" + assert mock_req.call_args[1]["timeout"] == 300.0 + + +class TestEarth2StudioClientMakeRequest: + """Test _make_request method""" + + def test_make_request_success_and_errors(self) -> None: + """Test HTTP request handling for various scenarios""" + client = Earth2StudioClient() + + # Test successful request + mock_response = Mock() + mock_response.ok = True + mock_response.status_code = 200 + mock_response.json.return_value = {"result": "success"} + with patch.object(client.session, "request", return_value=mock_response): + result = client._make_request("GET", "/test") + assert result == {"result": "success"} + + # Test timeout + with patch.object( + client.session, "request", side_effect=requests.exceptions.Timeout() + ): + with pytest.raises(RequestTimeoutError, match="timed out"): + client._make_request("GET", "/test") + + # Test connection error + with patch.object( + client.session, + "request", + side_effect=requests.exceptions.ConnectionError("Connection failed"), + ): + with pytest.raises(ClientConnectionError, match="Failed to connect"): + client._make_request("GET", "/test") + + def test_make_request_http_errors(self) -> None: + """Test HTTP error status code handling""" + client = Earth2StudioClient() + + # Test 400 Bad Request + mock_response = Mock() + mock_response.ok = False + mock_response.status_code = 400 + mock_response.json.return_value = {"error": "Invalid parameters"} + with patch.object(client.session, "request", return_value=mock_response): + with pytest.raises(BadRequestError, match="Invalid parameters"): + client._make_request("POST", "/test") + + # Test 404 Not Found + mock_response.status_code = 404 + mock_response.json.return_value = {"error": "Not found"} + with patch.object(client.session, "request", return_value=mock_response): + with pytest.raises(InferenceRequestNotFoundError, match="Not found"): + client._make_request("GET", "/test") + + # Test 500 Internal Server Error + mock_response.status_code = 500 + mock_response.json.return_value = {"error": "Internal server error"} + with patch.object(client.session, "request", return_value=mock_response): + with pytest.raises(InternalServerError, match="Internal server error"): + client._make_request("GET", "/test") + + # Test invalid JSON response + mock_response.ok = True + mock_response.status_code = 200 + mock_response.json.side_effect = json.JSONDecodeError("Invalid JSON", "", 0) + with patch.object(client.session, "request", return_value=mock_response): + with pytest.raises(Earth2StudioAPIError, match="Invalid JSON response"): + client._make_request("GET", "/test") + + def test_make_request_return_response_and_stream(self) -> None: + """Test returning raw response and streaming""" + client = Earth2StudioClient() + + mock_response = Mock() + mock_response.ok = True + mock_response.status_code = 200 + mock_response.content = b"streaming content" + + # Test return_response + with patch.object(client.session, "request", return_value=mock_response): + result = client._make_request("GET", "/test", return_response=True) + assert result is mock_response + + # Test stream with custom timeout + with patch.object( + client.session, "request", return_value=mock_response + ) as mock_req: + client._make_request( + "GET", "/test", return_response=True, stream=True, timeout=120.0 + ) + assert mock_req.call_args[1]["stream"] is True + assert mock_req.call_args[1]["timeout"] == 120.0 + + +class TestEarth2StudioClientContextManager: + """Test context manager protocol""" + + def test_context_manager(self) -> None: + """Test using client as context manager""" + with Earth2StudioClient() as client: + assert isinstance(client, Earth2StudioClient) + + # Test that session is closed on exit + client = Earth2StudioClient() + with patch.object(client.session, "close") as mock_close: + with client: + pass + mock_close.assert_called_once() + + +class TestEarth2StudioClientParseErrorResponse: + """Test _parse_error_response method""" + + def test_parse_error_response(self) -> None: + """Test parsing error responses with valid and invalid JSON""" + client = Earth2StudioClient() + + # Test valid JSON + mock_response = Mock() + mock_response.json.return_value = {"error": "Test error", "details": "Details"} + result = client._parse_error_response(mock_response) + assert result == {"error": "Test error", "details": "Details"} + + # Test invalid JSON with text + mock_response.status_code = 500 + mock_response.text = "Plain text error" + mock_response.json.side_effect = json.JSONDecodeError("Invalid", "", 0) + result = client._parse_error_response(mock_response) + assert result == {"error": "Plain text error"} + + # Test invalid JSON with empty text + mock_response.text = "" + result = client._parse_error_response(mock_response) + assert "HTTP 500 error" in result["error"] diff --git a/test/serve/client/test_e2client.py b/test/serve/client/test_e2client.py new file mode 100644 index 000000000..b1a2fc368 --- /dev/null +++ b/test/serve/client/test_e2client.py @@ -0,0 +1,663 @@ +#!/usr/bin/env python3 +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from collections import OrderedDict +from datetime import datetime +from typing import Any +from unittest.mock import MagicMock, Mock, patch + +import numpy as np +import pytest +import torch +import xarray as xr + +from earth2studio.serve.client.e2client import ( + InferenceOutputModel, + RemoteEarth2Workflow, + RemoteEarth2WorkflowResult, + _convert_time_to_lead_time, +) +from earth2studio.serve.client.exceptions import Earth2StudioAPIError +from earth2studio.serve.client.models import ( + InferenceRequestResponse, + InferenceRequestResults, + OutputFile, + RequestStatus, +) + + +class TestRemoteEarth2WorkflowInitialization: + """Test RemoteEarth2Workflow initialization""" + + def test_initialization(self) -> None: + """Test workflow initialization with various device configurations""" + with patch("earth2studio.serve.client.e2client.Earth2StudioClient"): + # Test with CUDA available + with patch("torch.cuda.is_available", return_value=True): + workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + ) + assert workflow.device == "cuda" + + # Test with CUDA unavailable + with patch("torch.cuda.is_available", return_value=False): + workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + ) + assert workflow.device == "cpu" + + # Test with custom device and xr_args + xr_args = {"chunks": {"time": 1}} + workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + device="cpu", + xr_args=xr_args, + ) + assert workflow.device == "cpu" + assert workflow.xr_args == xr_args + assert workflow.xr_args is not xr_args # Verify it's a copy + + def test_initialization_with_client_kwargs(self) -> None: + """Test workflow initialization passes kwargs to client""" + with patch( + "earth2studio.serve.client.e2client.Earth2StudioClient" + ) as mock_client_class: + RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + timeout=60.0, + max_retries=5, + ) + mock_client_class.assert_called_once_with( + base_url="http://localhost:8000", + workflow_name="test_workflow", + timeout=60.0, + max_retries=5, + ) + + +class TestRemoteEarth2WorkflowCall: + """Test RemoteEarth2Workflow __call__ method""" + + def test_call_submits_request(self) -> None: + """Test that calling workflow submits inference request with parameters""" + with patch( + "earth2studio.serve.client.e2client.Earth2StudioClient" + ) as mock_client_class: + mock_client = Mock() + mock_client_class.return_value = mock_client + + mock_response = InferenceRequestResponse( + execution_id="exec_123", + status=RequestStatus.ACCEPTED, + message="Request accepted", + timestamp=datetime.now(), + ) + mock_client.submit_inference_request.return_value = mock_response + + workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + ) + + # Call with parameters + result = workflow( + forecast_times=["2024-01-01T00:00:00"], + nsteps=20, + model="fcn", + ) + + assert isinstance(result, RemoteEarth2WorkflowResult) + assert result.execution_id == "exec_123" + + # Verify parameters were passed correctly + call_args = mock_client.submit_inference_request.call_args + request = call_args[0][0] + assert request.parameters["nsteps"] == 20 + assert request.parameters["model"] == "fcn" + + +class TestRemoteEarth2WorkflowTo: + """Test RemoteEarth2Workflow to() method""" + + def test_to_device(self) -> None: + """Test moving workflow to different devices""" + with patch("earth2studio.serve.client.e2client.Earth2StudioClient"): + workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + device="cpu", + ) + + # Test with string + result = workflow.to("cuda") + assert workflow.device == "cuda" + assert result is workflow + + # Test with torch.device + device = torch.device("cpu") + result = workflow.to(device) + assert workflow.device == device + + +class TestRemoteEarth2WorkflowResult: + """Test RemoteEarth2WorkflowResult class""" + + def test_result_caching(self) -> None: + """Test that result is cached after first retrieval""" + with patch( + "earth2studio.serve.client.e2client.Earth2StudioClient" + ) as mock_client_class: + mock_client = Mock() + mock_client_class.return_value = mock_client + + mock_inference_result = InferenceRequestResults( + request_id="exec_123", + status=RequestStatus.COMPLETED, + output_files=[], + completion_time=datetime.now(), + ) + mock_client.wait_for_completion.return_value = mock_inference_result + + workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + ) + result = RemoteEarth2WorkflowResult(workflow, "exec_123") + + # Multiple calls should use cache + result1 = result._get_result() + result2 = result._get_result() + assert result1 is result2 + mock_client.wait_for_completion.assert_called_once() + + def test_as_dataset_formats(self) -> None: + """Test as_dataset with different output formats""" + with patch( + "earth2studio.serve.client.e2client.Earth2StudioClient" + ) as mock_client_class: + mock_client = Mock() + mock_client.timeout = 30.0 # used by as_dataset for zarr_timeout + mock_client_class.return_value = mock_client + + workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + xr_args={"decode_coords": False}, + ) + + # Test Zarr format + with patch("xarray.open_zarr") as mock_open_zarr: + mock_inference_result = InferenceRequestResults( + request_id="exec_123", + status=RequestStatus.COMPLETED, + output_files=[OutputFile(path="output.zarr", size=1024)], + completion_time=datetime.now(), + ) + mock_client.wait_for_completion.return_value = mock_inference_result + mock_client.result_root_path.return_value = ( + "/v1/infer/test/exec_123/results/" + ) + + mock_ds = xr.Dataset() + mock_open_zarr.return_value = mock_ds + + result = RemoteEarth2WorkflowResult(workflow, "exec_123") + ds = result.as_dataset() + + assert ds is mock_ds + # Verify xr_args were passed + assert mock_open_zarr.call_args[1]["decode_coords"] is False + + # Test NetCDF format + with patch("xarray.open_dataset") as mock_open_dataset: + mock_inference_result = InferenceRequestResults( + request_id="exec_123", + status=RequestStatus.COMPLETED, + output_files=[OutputFile(path="output.nc", size=512)], + completion_time=datetime.now(), + ) + mock_client.wait_for_completion.return_value = mock_inference_result + mock_client.download_result.return_value = MagicMock() + + result = RemoteEarth2WorkflowResult(workflow, "exec_123") + result._result = None # Reset cache + ds = result.as_dataset() + + mock_client.download_result.assert_called_once() + mock_open_dataset.assert_called_once() + + def test_as_dataset_no_outputs(self) -> None: + """Test as_dataset when no output files are available""" + with patch( + "earth2studio.serve.client.e2client.Earth2StudioClient" + ) as mock_client_class: + mock_client = Mock() + mock_client_class.return_value = mock_client + + mock_inference_result = InferenceRequestResults( + request_id="exec_123", + status=RequestStatus.COMPLETED, + output_files=[], + completion_time=datetime.now(), + ) + mock_client.wait_for_completion.return_value = mock_inference_result + + workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + ) + result = RemoteEarth2WorkflowResult(workflow, "exec_123") + + with pytest.raises( + Earth2StudioAPIError, match="did not return any outputs" + ): + result.as_dataset() + + def test_as_data_source_and_model(self) -> None: + """Test as_data_source and as_model methods""" + with ( + patch( + "earth2studio.serve.client.e2client.Earth2StudioClient" + ) as mock_client_class, + patch("xarray.open_zarr"), + patch( + "earth2studio.serve.client.e2client.InferenceOutputSource" + ) as mock_ios_class, + ): + mock_client = Mock() + mock_client.timeout = 30.0 # used by as_dataset for zarr_timeout + mock_client_class.return_value = mock_client + + mock_inference_result = InferenceRequestResults( + request_id="exec_123", + status=RequestStatus.COMPLETED, + output_files=[OutputFile(path="output.zarr", size=1024)], + completion_time=datetime.now(), + ) + mock_client.wait_for_completion.return_value = mock_inference_result + mock_client.result_root_path.return_value = ( + "/v1/infer/test/exec_123/results/" + ) + + workflow = RemoteEarth2Workflow( + base_url="http://localhost:8000", + workflow_name="test_workflow", + ) + result = RemoteEarth2WorkflowResult(workflow, "exec_123") + + # Test as_data_source + result.as_data_source() + mock_ios_class.assert_called_once() + + # Test as_model with different iteration coordinates + model = result.as_model(iter_coord="lead_time") + assert isinstance(model, InferenceOutputModel) + assert model.iter_coord == "lead_time" + + model = result.as_model(iter_coord="time") + assert model.iter_coord == "time" + + +class TestConvertTimeToLeadTime: + """Test _convert_time_to_lead_time function""" + + def test_convert_time_to_lead_time(self) -> None: + """Test converting time coordinate to lead_time""" + # Create test data - shape should match coord order: (time, lead_time, variable, lat, lon) + x = torch.randn(3, 1, 4, 5, 6) + start_time = np.datetime64("2024-01-01T00:00:00") + times = np.array( + [ + np.datetime64("2024-01-01T00:00:00"), + np.datetime64("2024-01-01T06:00:00"), + np.datetime64("2024-01-01T12:00:00"), + ] + ) + + coords = OrderedDict( + { + "time": times, + "lead_time": np.array([np.timedelta64(0, "h")]), + "variable": np.array(["u10m", "v10m", "t2m", "tp"]), + "lat": np.arange(5), + "lon": np.arange(6), + } + ) + + x_new, coords_new = _convert_time_to_lead_time(x, coords, start_time) + + # Verify transformation + assert coords_new["time"].shape == (1,) + assert coords_new["time"][0] == start_time + assert coords_new["lead_time"].shape == (3,) + # Verify lead times are correct + expected_lead_times = times - start_time + np.testing.assert_array_equal(coords_new["lead_time"], expected_lead_times) + + def test_convert_time_to_lead_time_preserves_other_coords(self) -> None: + """Test that other coordinates are preserved""" + # Shape: (time, lead_time, variable, lat, lon) + x = torch.randn(2, 1, 3, 4, 5) + start_time = np.datetime64("2024-01-01T00:00:00") + times = np.array( + [ + np.datetime64("2024-01-01T00:00:00"), + np.datetime64("2024-01-01T06:00:00"), + ] + ) + + coords = OrderedDict( + { + "time": times, + "lead_time": np.array([np.timedelta64(0, "h")]), + "variable": np.array(["u10m", "v10m", "t2m"]), + "lat": np.arange(4), + "lon": np.arange(5), + } + ) + + _, coords_new = _convert_time_to_lead_time(x, coords, start_time) + + # Verify other coordinates are unchanged + np.testing.assert_array_equal(coords_new["variable"], coords["variable"]) + np.testing.assert_array_equal(coords_new["lat"], coords["lat"]) + np.testing.assert_array_equal(coords_new["lon"], coords["lon"]) + + +class TestInferenceOutputModel: + """Test InferenceOutputModel class""" + + @pytest.fixture + def mock_data_source(self) -> Any: + """Create a mock InferenceOutputSource""" + mock_ds = Mock() + + # Create mock DataArray with coordinates + times = np.array( + [ + np.datetime64("2024-01-01T00:00:00"), + np.datetime64("2024-01-01T06:00:00"), + ] + ) + variables = np.array(["u10m", "v10m", "t2m"]) + lats = np.arange(10) + lons = np.arange(20) + + # Create mock coordinate objects that support slicing + mock_time_coord = Mock() + mock_time_coord.values = times + mock_time_coord.__getitem__ = Mock( + side_effect=lambda key: Mock(values=times[key]) + ) + + mock_lat_coord = Mock() + mock_lat_coord.values = lats + + mock_lon_coord = Mock() + mock_lon_coord.values = lons + + mock_da = Mock() + mock_da.coords = { + "time": mock_time_coord, + "variable": variables, + "lat": mock_lat_coord, + "lon": mock_lon_coord, + } + + mock_ds.da = mock_da + return mock_ds + + def test_initialization(self, mock_data_source: Any) -> None: + """Test InferenceOutputModel initialization with default and custom variables""" + # Test with default variables + model = InferenceOutputModel( + data_source=mock_data_source, + iter_coord="lead_time", + device="cpu", + ) + assert model.iter_coord == "lead_time" + assert model.device == "cpu" + np.testing.assert_array_equal( + model.variables, np.array(["u10m", "v10m", "t2m"]) + ) + + # Test with custom variables + model = InferenceOutputModel( + data_source=mock_data_source, + variables=["u10m", "v10m"], + device="cpu", + ) + np.testing.assert_array_equal(model.variables, np.array(["u10m", "v10m"])) + + def test_coords(self, mock_data_source: Any) -> None: + """Test input_coords and output_coords methods""" + model = InferenceOutputModel( + data_source=mock_data_source, + iter_coord="lead_time", + device="cpu", + ) + + # Test input_coords + input_coords = model.input_coords() + assert isinstance(input_coords, OrderedDict) + assert len(input_coords["time"]) == 0 + assert len(input_coords["variable"]) == 0 + + # Test output_coords + output_coords = model.output_coords(OrderedDict()) + assert isinstance(output_coords, OrderedDict) + np.testing.assert_array_equal( + output_coords["variable"], np.array(["u10m", "v10m", "t2m"]) + ) + assert len(output_coords["lat"]) == 10 + assert len(output_coords["lon"]) == 20 + # Time step should be inferred as 6 hours + assert output_coords["lead_time"][0] == np.timedelta64(6, "h") + + def test_output_coords_single_time_step(self) -> None: + """Test output_coords with only one time step""" + mock_ds = Mock() + + # Single time step + times = np.array([np.datetime64("2024-01-01T00:00:00")]) + + # Create mock coordinate that supports slicing + mock_time_coord = Mock() + mock_time_coord.values = times + mock_time_coord.__getitem__ = Mock( + side_effect=lambda key: Mock(values=times[key]) + ) + + mock_lat_coord = Mock() + mock_lat_coord.values = np.arange(10) + + mock_lon_coord = Mock() + mock_lon_coord.values = np.arange(20) + + mock_da = Mock() + mock_da.coords = { + "time": mock_time_coord, + "variable": np.array(["u10m"]), + "lat": mock_lat_coord, + "lon": mock_lon_coord, + } + mock_ds.da = mock_da + + model = InferenceOutputModel( + data_source=mock_ds, + iter_coord="lead_time", + device="cpu", + ) + + output_coords = model.output_coords(OrderedDict()) + + # Should use default placeholder of 6 hours + assert output_coords["lead_time"][0] == np.timedelta64(6, "h") + + def test_to_device(self, mock_data_source: Any) -> None: + """Test to() method""" + model = InferenceOutputModel( + data_source=mock_data_source, + iter_coord="lead_time", + device="cpu", + ) + + result = model.to("cuda") + assert model.device == "cuda" + assert result is model + + def test_call_method(self, mock_data_source: Any) -> None: + """Test __call__ method returns first item from iterator""" + model = InferenceOutputModel( + data_source=mock_data_source, + iter_coord="lead_time", + device="cpu", + ) + + mock_tensor = torch.randn(1, 1, 3, 10, 20) + mock_coords = OrderedDict({"time": np.array([np.datetime64("2024-01-01")])}) + + with patch.object( + model, "create_iterator", return_value=iter([(mock_tensor, mock_coords)]) + ): + x, coords = model() + assert torch.is_tensor(x) + assert isinstance(coords, OrderedDict) + + def test_create_iterator(self, mock_data_source: Any) -> None: + """Test create_iterator with and without lead_time conversion""" + model = InferenceOutputModel( + data_source=mock_data_source, + iter_coord="time", + device="cpu", + ) + + # Mock fetch_data to return different data for each time + def mock_fetch_data( + source: Any, time: Any, variable: Any, device: Any + ) -> tuple[Any, Any]: + tensor = torch.randn(1, 3, 10, 20) + coords = OrderedDict( + { + "time": time, + "variable": variable, + "lat": np.arange(10), + "lon": np.arange(20), + } + ) + return (tensor, coords) + + with patch( + "earth2studio.serve.client.e2client.fetch_data", + side_effect=mock_fetch_data, + ): + iterator = model.create_iterator() + results = list(iterator) + + # Should yield data for both time steps + assert len(results) == 2 + for x, coords in results: + assert torch.is_tensor(x) + assert isinstance(coords, OrderedDict) + + def test_create_iterator_with_lead_time_conversion( + self, mock_data_source: Any + ) -> None: + """Test create_iterator with lead_time coordinate conversion""" + model = InferenceOutputModel( + data_source=mock_data_source, + iter_coord="lead_time", + device="cpu", + ) + + mock_tensor = torch.randn(1, 3, 10, 20) + mock_coords = OrderedDict( + { + "time": np.array([np.datetime64("2024-01-01T00:00:00")]), + "variable": np.array(["u10m", "v10m", "t2m"]), + "lat": np.arange(10), + "lon": np.arange(20), + "lead_time": np.array([np.timedelta64(0, "h")]), + } + ) + + with ( + patch( + "earth2studio.serve.client.e2client.fetch_data", + return_value=(mock_tensor, mock_coords), + ), + patch( + "earth2studio.serve.client.e2client._convert_time_to_lead_time", + return_value=(mock_tensor, mock_coords), + ) as mock_convert, + ): + iterator = model.create_iterator() + next(iterator) + + # Verify conversion was called + mock_convert.assert_called_once() + + +class TestInferenceOutputModelIntegration: + """Integration tests for InferenceOutputModel""" + + def test_model_mimics_prognostic_interface(self) -> None: + """Test that InferenceOutputModel provides prognostic model interface""" + mock_ds = Mock() + + times = np.array([np.datetime64("2024-01-01T00:00:00")]) + + # Create mock coordinate that supports slicing + mock_time_coord = Mock() + mock_time_coord.values = times + mock_time_coord.__getitem__ = Mock( + side_effect=lambda key: Mock(values=times[key]) + ) + + mock_lat_coord = Mock() + mock_lat_coord.values = np.arange(10) + + mock_lon_coord = Mock() + mock_lon_coord.values = np.arange(20) + + mock_da = Mock() + mock_da.coords = { + "time": mock_time_coord, + "variable": np.array(["u10m"]), + "lat": mock_lat_coord, + "lon": mock_lon_coord, + } + mock_ds.da = mock_da + + model = InferenceOutputModel( + data_source=mock_ds, + iter_coord="lead_time", + device="cpu", + ) + + # Verify interface methods exist and return correct types + assert hasattr(model, "input_coords") + assert hasattr(model, "output_coords") + assert hasattr(model, "to") + assert hasattr(model, "create_iterator") + assert callable(model) + assert isinstance(model.input_coords(), OrderedDict) + assert isinstance(model.output_coords(OrderedDict()), OrderedDict) diff --git a/test/serve/client/test_fsspec_utils.py b/test/serve/client/test_fsspec_utils.py new file mode 100644 index 000000000..ec0936d86 --- /dev/null +++ b/test/serve/client/test_fsspec_utils.py @@ -0,0 +1,378 @@ +#!/usr/bin/env python3 +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from datetime import datetime +from unittest.mock import MagicMock, Mock, patch + +import pytest + +from earth2studio.serve.client.fsspec_utils import ( + SignedURLFileSystem, + create_cloudfront_mapper, + get_mapper, +) +from earth2studio.serve.client.models import ( + InferenceRequestResults, + RequestStatus, + StorageType, +) + + +class TestSignedURLFileSystemInit: + """Test SignedURLFileSystem initialization.""" + + def test_init_stores_params(self) -> None: + """Init stores base_fs, query_params, base_url and builds query_string.""" + base_fs = Mock() + query_params = {"Policy": "p", "Signature": "s", "Key-Pair-Id": "k"} + base_url = "https://example.com/store" + fs = SignedURLFileSystem(base_fs, query_params, base_url) + assert fs._fs is base_fs + assert fs._query_params == query_params + assert fs._base_url == base_url + assert "Policy=p" in fs._query_string + assert "Signature=s" in fs._query_string + assert "Key-Pair-Id=k" in fs._query_string + + +class TestSignedURLFileSystemMakeSignedPath: + """Test _make_signed_path.""" + + def test_relative_path_appends_to_base_url(self) -> None: + """Relative path is joined with base_url and query string appended.""" + base_fs = Mock() + fs = SignedURLFileSystem( + base_fs, {"Policy": "p", "Signature": "s"}, "https://example.com/zarr" + ) + out = fs._make_signed_path("subdir/.zmetadata") + assert out.startswith("https://example.com/zarr/subdir/.zmetadata") + assert "Policy=p" in out + assert "Signature=s" in out + assert "?" in out + + def test_relative_path_empty_uses_base_url_only(self) -> None: + """Empty relative path uses base_url only.""" + base_fs = Mock() + fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com/") + out = fs._make_signed_path("") + assert out in ("https://example.com/?Policy=p", "https://example.com?Policy=p") + + def test_path_starting_with_http_unchanged_with_query_appended(self) -> None: + """Path starting with http is used as full URL; query params appended.""" + base_fs = Mock() + fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com") + out = fs._make_signed_path("https://cdn.example.com/path") + assert out.startswith("https://cdn.example.com/path") + assert "Policy=p" in out + + def test_url_with_existing_query_uses_ampersand(self) -> None: + """If URL already has ?, separator is &.""" + base_fs = Mock() + fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com?foo=1") + out = fs._make_signed_path("x") + assert "&Policy=" in out or "&policy=" in out.lower() + + +class TestSignedURLFileSystemHandle403: + """Test _handle_403.""" + + def test_403_raises_file_not_found(self) -> None: + """Exception containing 403 raises FileNotFoundError.""" + base_fs = Mock() + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + with pytest.raises(FileNotFoundError, match="File not found: /path"): + fs._handle_403(Exception("HTTP 403 Forbidden"), "/path") + + def test_forbidden_text_raises_file_not_found(self) -> None: + """Exception containing 'forbidden' raises FileNotFoundError.""" + base_fs = Mock() + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + with pytest.raises(FileNotFoundError, match="File not found: /x"): + fs._handle_403(Exception("Access forbidden"), "/x") + + def test_other_exception_reraises(self) -> None: + """Non-403 exception is reraised.""" + base_fs = Mock() + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + with pytest.raises(ValueError, match="other"): + fs._handle_403(ValueError("other"), "/path") + + +class TestSignedURLFileSystemOpen: + """Test _open.""" + + def test_open_success_returns_file_like(self) -> None: + """Successful _open returns result from base fs _open.""" + base_fs = Mock() + base_fs._open.return_value = MagicMock() + fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com") + result = fs._open("sub/file", mode="rb") + assert result is base_fs._open.return_value + base_fs._open.assert_called_once() + call_url = base_fs._open.call_args[0][0] + assert ( + "sub/file" in call_url + or "sub%2Ffile" in call_url + or call_url.endswith("sub/file") + ) + assert base_fs._open.call_args[1]["mode"] == "rb" + + def test_open_403_raises_file_not_found(self) -> None: + """Base _open raising 403 leads to FileNotFoundError.""" + base_fs = Mock() + base_fs._open.side_effect = Exception("403 Forbidden") + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + with pytest.raises(FileNotFoundError, match="File not found"): + fs._open("x") + + +class TestSignedURLFileSystemCatFile: + """Test cat_file.""" + + def test_cat_file_success(self) -> None: + """cat_file success returns content from base fs.""" + base_fs = Mock() + base_fs.cat_file.return_value = b"content" + fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com") + result = fs.cat_file("path/to/file") + assert result == b"content" + base_fs.cat_file.assert_called_once() + assert "path/to/file" in base_fs.cat_file.call_args[0][0] or "path" in str( + base_fs.cat_file.call_args + ) + + def test_cat_file_with_start_end(self) -> None: + """cat_file passes start/end to base fs.""" + base_fs = Mock() + base_fs.cat_file.return_value = b"xx" + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + fs.cat_file("f", start=0, end=10) + base_fs.cat_file.assert_called_once() + assert base_fs.cat_file.call_args[1]["start"] == 0 + assert base_fs.cat_file.call_args[1]["end"] == 10 + + def test_cat_file_403_raises_file_not_found(self) -> None: + """cat_file 403 raises FileNotFoundError.""" + base_fs = Mock() + base_fs.cat_file.side_effect = Exception("403") + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + with pytest.raises(FileNotFoundError): + fs.cat_file("x") + + +class TestSignedURLFileSystemCatFileAsync: + """Test _cat_file (delegates to cat_file).""" + + def test_cat_file_delegates_to_cat_file(self) -> None: + """_cat_file calls cat_file with same args.""" + base_fs = Mock() + base_fs.cat_file.return_value = b"data" + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + result = fs._cat_file("a", start=1, end=2) + assert result == b"data" + base_fs.cat_file.assert_called_once() + assert base_fs.cat_file.call_args[1]["start"] == 1 + assert base_fs.cat_file.call_args[1]["end"] == 2 + + +class TestSignedURLFileSystemInfo: + """Test info.""" + + def test_info_success(self) -> None: + """info returns metadata from base fs.""" + base_fs = Mock() + base_fs.info.return_value = {"size": 100, "type": "file"} + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + result = fs.info("path") + assert result == {"size": 100, "type": "file"} + + def test_info_403_raises_file_not_found(self) -> None: + """info 403 raises FileNotFoundError.""" + base_fs = Mock() + base_fs.info.side_effect = Exception("Forbidden") + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + with pytest.raises(FileNotFoundError): + fs.info("x") + + +class TestSignedURLFileSystemExists: + """Test exists.""" + + def test_exists_true(self) -> None: + """exists returns True when base fs returns True.""" + base_fs = Mock() + base_fs.exists.return_value = True + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + assert fs.exists("path") is True + + def test_exists_403_returns_false(self) -> None: + """exists returns False when base raises 403.""" + base_fs = Mock() + base_fs.exists.side_effect = Exception("403 Forbidden") + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + assert fs.exists("path") is False + + def test_exists_false_when_base_returns_false(self) -> None: + """exists returns False when base fs returns False.""" + base_fs = Mock() + base_fs.exists.return_value = False + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + assert fs.exists("path") is False + + def test_exists_other_exception_reraises(self) -> None: + """exists re-raises non-403 exceptions.""" + base_fs = Mock() + base_fs.exists.side_effect = RuntimeError("network error") + fs = SignedURLFileSystem(base_fs, {}, "https://example.com") + with pytest.raises(RuntimeError, match="network error"): + fs.exists("path") + + +class TestCreateCloudfrontMapper: + """Test create_cloudfront_mapper.""" + + def test_create_cloudfront_mapper_builds_mapper(self) -> None: + """create_cloudfront_mapper parses URL and returns FSMap with SignedURLFileSystem.""" + signed_url = "https://cdn.example.com/bucket/path?Policy=pol&Signature=sig&Key-Pair-Id=kid" + with patch("earth2studio.serve.client.fsspec_utils.fsspec") as mock_fsspec: + mock_fs = Mock() + mock_fsspec.filesystem.return_value = mock_fs + mock_map = Mock() + mock_fsspec.mapping.FSMap = mock_map + result = create_cloudfront_mapper(signed_url) + mock_fsspec.filesystem.assert_called_once_with("https") + mock_map.assert_called_once() + call_kwargs = mock_map.call_args[1] + assert call_kwargs["root"] == "" + assert call_kwargs["check"] is False + assert call_kwargs["create"] is False + assert isinstance(call_kwargs["fs"], SignedURLFileSystem) + assert result is mock_map.return_value + + def test_create_cloudfront_mapper_with_zarr_path(self) -> None: + """create_cloudfront_mapper with zarr_path appends to base URL.""" + signed_url = "https://cdn.example.com/bucket?Policy=p&Signature=s&Key-Pair-Id=k" + with patch("earth2studio.serve.client.fsspec_utils.fsspec") as mock_fsspec: + mock_fs = Mock() + mock_fsspec.filesystem.return_value = mock_fs + mock_map = Mock() + mock_fsspec.mapping.FSMap = mock_map + create_cloudfront_mapper(signed_url, zarr_path="results.zarr") + fs_arg = mock_map.call_args[1]["fs"] + assert isinstance(fs_arg, SignedURLFileSystem) + assert "results.zarr" in fs_arg._base_url + + def test_create_cloudfront_mapper_strips_trailing_wildcard(self) -> None: + """URL path with trailing /* or * is stripped.""" + signed_url = ( + "https://cdn.example.com/bucket/*?Policy=p&Signature=s&Key-Pair-Id=k" + ) + with patch("earth2studio.serve.client.fsspec_utils.fsspec") as mock_fsspec: + mock_fs = Mock() + mock_fsspec.filesystem.return_value = mock_fs + mock_fsspec.mapping.FSMap = Mock() + create_cloudfront_mapper(signed_url) + fs_arg = mock_fsspec.mapping.FSMap.call_args[1]["fs"] + assert "*" not in fs_arg._base_url + assert fs_arg._base_url.rstrip("/").endswith("bucket") + + +class TestGetMapper: + """Test get_mapper.""" + + def test_get_mapper_server_returns_none(self) -> None: + """get_mapper returns None for SERVER storage.""" + result = InferenceRequestResults( + request_id="r1", + status=RequestStatus.COMPLETED, + output_files=[], + completion_time=datetime.now(), + storage_type=StorageType.SERVER, + ) + assert get_mapper(result) is None + + def test_get_mapper_s3_with_signed_url_returns_mapper(self) -> None: + """get_mapper with S3 and signed_url returns mapper from create_cloudfront_mapper.""" + result = InferenceRequestResults( + request_id="r1", + status=RequestStatus.COMPLETED, + output_files=[], + completion_time=datetime.now(), + storage_type=StorageType.S3, + signed_url="https://cdn.example.com/path?Policy=p&Signature=s&Key-Pair-Id=k", + ) + with patch( + "earth2studio.serve.client.fsspec_utils.create_cloudfront_mapper" + ) as mock_create: + mock_create.return_value = Mock() + out = get_mapper(result) + assert out is mock_create.return_value + mock_create.assert_called_once_with(result.signed_url, "") + + def test_get_mapper_s3_with_zarr_path_passes_through(self) -> None: + """get_mapper passes zarr_path to create_cloudfront_mapper.""" + result = InferenceRequestResults( + request_id="r1", + status=RequestStatus.COMPLETED, + output_files=[], + completion_time=datetime.now(), + storage_type=StorageType.S3, + signed_url="https://cdn.example.com?Policy=p&Signature=s&Key-Pair-Id=k", + ) + with patch( + "earth2studio.serve.client.fsspec_utils.create_cloudfront_mapper" + ) as mock_create: + mock_create.return_value = Mock() + get_mapper(result, zarr_path="results.zarr") + mock_create.assert_called_once_with(result.signed_url, "results.zarr") + + def test_get_mapper_s3_without_signed_url_raises(self) -> None: + """get_mapper with S3 and no signed_url raises ValueError.""" + result = InferenceRequestResults( + request_id="r1", + status=RequestStatus.COMPLETED, + output_files=[], + completion_time=datetime.now(), + storage_type=StorageType.S3, + signed_url=None, + ) + with pytest.raises(ValueError, match="S3 storage type requires a signed URL"): + get_mapper(result) + + def test_get_mapper_unsupported_storage_raises(self) -> None: + """get_mapper with unsupported storage type raises ValueError.""" + result = InferenceRequestResults( + request_id="r1", + status=RequestStatus.COMPLETED, + output_files=[], + completion_time=datetime.now(), + storage_type=StorageType.SERVER, # will override via monkeypatch for unsupported + ) + # Use a storage type that doesn't exist in enum by creating a mock with invalid type + with patch.object(result, "storage_type", "invalid"): + # StorageType.SERVER is enum; "invalid" would be if we had another enum value. + # Instead simulate by patching the comparison: get_mapper checks + # request_result.storage_type == StorageType.S3 and == StorageType.SERVER. + # So unsupported = something that is neither. We need a value that is not + # StorageType.S3 and not StorageType.SERVER. StorageType only has SERVER and S3. + # So we need to pass something that fails both. E.g. a mock with storage_type + # that returns False for both. Or add a fake enum value. Easiest: patch + # StorageType to add a third value temporarily, or pass a mock object. + mock_result = Mock() + mock_result.storage_type = "unsupported_type" + with pytest.raises(ValueError, match="Unsupported storage type"): + get_mapper(mock_result) diff --git a/test/serve/conftest.py b/test/serve/conftest.py deleted file mode 100644 index 8eacca441..000000000 --- a/test/serve/conftest.py +++ /dev/null @@ -1,112 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -""" -Shared pytest configuration for service tests. - -This conftest.py ensures that the service/inferenceserver directory is in the -Python path so that api_server modules can be imported. -""" - -import sys -from pathlib import Path - -# Add service/inferenceserver to Python path for imports -_inferenceserver_path = ( - Path(__file__).parent.parent.parent / "service" / "inferenceserver" -) -if str(_inferenceserver_path) not in sys.path: - sys.path.insert(0, str(_inferenceserver_path)) - -# Store original api_server.config module to restore it if it gets mocked -_original_config_module = None - - -def pytest_configure(config): - """Store the original api_server.config module before any tests run""" - global _original_config_module - if "api_server.config" in sys.modules: - _original_config_module = sys.modules["api_server.config"] - - -def pytest_runtest_setup(item): - """Restore the real api_server.config module before test_config.py tests""" - # Only restore for test_config.py tests to avoid interfering with other tests - if "test_config" in str(item.fspath): - import importlib - - # Remove any mock that might have been set by other test files - if "api_server.config" in sys.modules: - # Check if it's a mock (Mock objects have _mock_name attribute or are Mock instances) - config_module = sys.modules["api_server.config"] - is_mock = ( - hasattr(config_module, "_mock_name") - or str(type(config_module)) == "" - or ( - hasattr(config_module, "__class__") - and "Mock" in str(config_module.__class__) - ) - ) - if is_mock: - # It's a mock, restore the real module - # First, clear any references in parent modules - if "api_server" in sys.modules: - api_server_module = sys.modules["api_server"] - if ( - hasattr(api_server_module, "config") - and api_server_module.config is config_module - ): - delattr(api_server_module, "config") - # Remove the mock from sys.modules - del sys.modules["api_server.config"] - # Also clear any submodules that might reference the mock - modules_to_remove = [ - key - for key in sys.modules.keys() - if key.startswith("api_server.config.") - ] - for key in modules_to_remove: - del sys.modules[key] - # Force reload the real module to ensure fresh state - if "api_server.config" not in sys.modules: - importlib.import_module("api_server.config") - else: - # Only reload if it was a mock, otherwise just ensure state is correct - config_module = sys.modules["api_server.config"] - is_mock = ( - hasattr(config_module, "_mock_name") - or str(type(config_module)) == "" - ) - if is_mock: - importlib.reload(sys.modules["api_server.config"]) - # Ensure _config_manager and ConfigManager._instance are properly initialized - real_config = sys.modules["api_server.config"] - # Check if _config_manager is a mock and reset if needed - cm = getattr(real_config, "_config_manager", None) - if cm is not None and ( - hasattr(cm, "_mock_name") or str(type(cm)) == "" - ): - real_config._config_manager = None - # Check if ConfigManager._instance is a mock and reset if needed - if hasattr(real_config, "ConfigManager") and hasattr( - real_config.ConfigManager, "_instance" - ): - inst = getattr(real_config.ConfigManager, "_instance", None) - if inst is not None and ( - hasattr(inst, "_mock_name") - or str(type(inst)) == "" - ): - real_config.ConfigManager._instance = None diff --git a/test/serve/server/conftest.py b/test/serve/server/conftest.py new file mode 100644 index 000000000..197a365e5 --- /dev/null +++ b/test/serve/server/conftest.py @@ -0,0 +1,88 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import sys +from pathlib import Path + +# Repo root is parent of test/serve/server; ensure project is importable +_repo_root = Path(__file__).resolve().parent.parent.parent +if str(_repo_root) not in sys.path: + sys.path.insert(0, str(_repo_root)) + +# Store original earth2studio.serve.server.config module to restore if mocked +_original_config_module = None + +_CONFIG_MODULE = "earth2studio.serve.server.config" + + +def pytest_configure(config): + """Store the original config module before any tests run""" + global _original_config_module + if _CONFIG_MODULE in sys.modules: + _original_config_module = sys.modules[_CONFIG_MODULE] + + +def pytest_runtest_setup(item): + """Restore the real config module before test_config.py tests""" + if "test_config" not in str(item.fspath): + return + import importlib + + if _CONFIG_MODULE in sys.modules: + config_module = sys.modules[_CONFIG_MODULE] + is_mock = ( + hasattr(config_module, "_mock_name") + or str(type(config_module)) == "" + or ( + hasattr(config_module, "__class__") + and "Mock" in str(config_module.__class__) + ) + ) + if is_mock: + if "earth2studio.serve.server" in sys.modules: + server_module = sys.modules["earth2studio.serve.server"] + if ( + hasattr(server_module, "config") + and server_module.config is config_module + ): + delattr(server_module, "config") + del sys.modules[_CONFIG_MODULE] + modules_to_remove = [ + k for k in sys.modules if k.startswith(_CONFIG_MODULE + ".") + ] + for k in modules_to_remove: + del sys.modules[k] + if _CONFIG_MODULE not in sys.modules: + importlib.import_module(_CONFIG_MODULE) + else: + config_module = sys.modules[_CONFIG_MODULE] + is_mock = ( + hasattr(config_module, "_mock_name") + or str(type(config_module)) == "" + ) + if is_mock: + importlib.reload(sys.modules[_CONFIG_MODULE]) + real_config = sys.modules[_CONFIG_MODULE] + # Check if ConfigManager._instance is a mock and reset if needed + if hasattr(real_config, "ConfigManager") and hasattr( + real_config.ConfigManager, "_instance" + ): + inst = getattr(real_config.ConfigManager, "_instance", None) + if inst is not None and ( + hasattr(inst, "_mock_name") + or str(type(inst)) == "" + ): + real_config.ConfigManager._instance = None diff --git a/test/serve/server/test_cleanup_daemon.py b/test/serve/server/test_cleanup_daemon.py new file mode 100644 index 000000000..fb4800639 --- /dev/null +++ b/test/serve/server/test_cleanup_daemon.py @@ -0,0 +1,775 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import json +from datetime import datetime, timedelta, timezone +from unittest.mock import MagicMock, patch + +import pytest + +from earth2studio.serve.server.cleanup_daemon import ( + _delete_result_files, + _process_expired_key, + cleanup_expired_results, + main, +) +from earth2studio.serve.server.config import get_config +from earth2studio.serve.server.workflow import WorkflowStatus + + +class TestDeleteResultFiles: + """Test suite for _delete_result_files function""" + + @pytest.fixture + def mock_redis(self): + """Create a mock Redis client""" + return MagicMock() + + def test_delete_workflow_files_with_workflow_name(self, mock_redis): + """Test deletion of workflow execution files including workflow-specific directories and metadata""" + # Setup + workflow_name = "custom_workflow" + execution_id = "exec_456" + combined_id = f"{workflow_name}:{execution_id}" + zip_filename = f"workflow_{combined_id}.zip" + + mock_redis.get.return_value = zip_filename + + # Mock zip file + mock_zip_file = MagicMock() + mock_zip_file.exists.return_value = True + mock_zip_file.unlink = MagicMock() + + # Mock metadata file for workflow + mock_metadata_file = MagicMock() + mock_metadata_file.is_file.return_value = True + mock_metadata_file.is_dir.return_value = False + mock_metadata_file.name = f"metadata_{combined_id}.json" + mock_metadata_file.unlink = MagicMock() + + # Mock workflow directory + mock_workflow_dir = MagicMock() + mock_workflow_dir.exists.return_value = True + + mock_workflow_subdir = MagicMock() + mock_workflow_subdir.is_dir.return_value = True + mock_workflow_subdir.is_file.return_value = False + mock_workflow_subdir.name = f"output_{execution_id}" + + mock_workflow_dir.iterdir.return_value = [mock_workflow_subdir] + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_output_dir.__truediv__ = lambda self, other: mock_workflow_dir + + mock_zip_dir = MagicMock() + mock_zip_dir.__truediv__ = lambda self, other: mock_zip_file + mock_zip_dir.iterdir.return_value = [mock_metadata_file] + + with patch( + "earth2studio.serve.server.cleanup_daemon.shutil.rmtree" + ) as mock_rmtree: + # Execute + _delete_result_files( + mock_redis, + combined_id, + execution_id, + mock_output_dir, + mock_zip_dir, + workflow_name=workflow_name, + ) + + # Verify zip file deleted + mock_zip_file.unlink.assert_called_once() + + # Verify metadata file deleted + mock_metadata_file.unlink.assert_called_once() + + # Verify workflow-specific directory deleted + mock_rmtree.assert_called_once_with(mock_workflow_subdir) + + def test_delete_files_no_zip_in_redis(self, mock_redis): + """Test deletion when no zip file is found in Redis""" + # Setup + result_id = "result_789" + mock_redis.get.return_value = None + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + + # Execute - should not raise exception + _delete_result_files( + mock_redis, result_id, result_id, mock_output_dir, mock_zip_dir + ) + + # Verify Redis was queried + mock_redis.get.assert_called_once() + + def test_delete_result_files_zip_file_missing(self, mock_redis): + """When zip filename is in Redis but file does not exist, no unlink is called.""" + result_id = "req_123" + mock_redis.get.return_value = "missing.zip" + + mock_zip_path = MagicMock() + mock_zip_path.exists.return_value = False + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + mock_zip_dir.__truediv__ = lambda self, other: mock_zip_path + + _delete_result_files( + mock_redis, result_id, result_id, mock_output_dir, mock_zip_dir + ) + + mock_zip_path.unlink.assert_not_called() + + def test_delete_result_files_legacy_path_deletes_metadata_and_dirs( + self, mock_redis + ): + """Without workflow_name, still deletes metadata files and raw/zip dirs matching search_id.""" + search_id = "exec_789" + result_id = search_id + mock_redis.get.return_value = None + + mock_metadata_file = MagicMock() + mock_metadata_file.is_file.return_value = True + mock_metadata_file.is_dir.return_value = False + mock_metadata_file.name = f"metadata_{search_id}.json" + mock_metadata_file.unlink = MagicMock() + + mock_raw_dir = MagicMock() + mock_raw_dir.is_dir.return_value = True + mock_raw_dir.name = f"output_{search_id}" + mock_raw_dir.__str__ = lambda self: f"output_{search_id}" + + mock_zip_subdir = MagicMock() + mock_zip_subdir.is_dir.return_value = True + mock_zip_subdir.name = f"results_{search_id}" + mock_zip_subdir.__str__ = lambda self: f"results_{search_id}" + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [mock_raw_dir] + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [mock_metadata_file, mock_zip_subdir] + + with patch( + "earth2studio.serve.server.cleanup_daemon.shutil.rmtree" + ) as mock_rmtree: + _delete_result_files( + mock_redis, + result_id, + search_id, + mock_output_dir, + mock_zip_dir, + ) + + mock_metadata_file.unlink.assert_called_once() + assert mock_rmtree.call_count == 2 # raw dir + zip_dir subdir + rmtree_calls = {str(c[0][0]) for c in mock_rmtree.call_args_list} + assert f"output_{search_id}" in rmtree_calls or mock_rmtree.call_count == 2 + + def test_delete_result_files_workflow_dir_not_exists(self, mock_redis): + """When workflow_name is set but workflow subdirectory does not exist, no rmtree on it.""" + workflow_name = "my_wf" + execution_id = "exec_1" + combined_id = f"{workflow_name}:{execution_id}" + mock_redis.get.return_value = None + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_workflow_dir = MagicMock() + mock_workflow_dir.exists.return_value = False # workflow dir not present + mock_output_dir.__truediv__ = lambda self, other: mock_workflow_dir + + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + + with patch( + "earth2studio.serve.server.cleanup_daemon.shutil.rmtree" + ) as mock_rmtree: + _delete_result_files( + mock_redis, + combined_id, + execution_id, + mock_output_dir, + mock_zip_dir, + workflow_name=workflow_name, + ) + + mock_workflow_dir.iterdir.assert_not_called() + mock_rmtree.assert_not_called() + + +class TestProcessExpiredKey: + """Test suite for _process_expired_key function""" + + @pytest.fixture + def mock_redis(self): + """Create a mock Redis client""" + return MagicMock() + + @pytest.fixture + def mock_delete_func(self): + """Create a mock delete function""" + return MagicMock() + + def test_process_expired_key_success(self, mock_redis, mock_delete_func): + """Test successful processing of an expired key""" + # Setup + key = "workflow_execution:wf1:exec_123" + current_time = datetime.now(timezone.utc) + old_time = current_time - timedelta(hours=25) # 25 hours ago + results_ttl_hours = 24 + + request_data = { + "status": WorkflowStatus.COMPLETED, + "end_time": old_time.isoformat(), + "execution_id": "exec_123", + } + + mock_redis.get.return_value = json.dumps(request_data) + config = get_config() + + # Execute + result = _process_expired_key( + redis_client=mock_redis, + key=key, + current_time=current_time, + results_ttl_hours=results_ttl_hours, + retention_ttl=config.redis.retention_ttl, + expected_status=WorkflowStatus.COMPLETED, + get_end_time_field="end_time", + delete_files_func=mock_delete_func, + log_prefix="workflow", + ) + + # Verify + assert result is True + mock_delete_func.assert_called_once_with(mock_redis, key) + mock_redis.setex.assert_called_once() + args = mock_redis.setex.call_args[0] + assert args[0] == key + assert args[1] == config.redis.retention_ttl + updated_data = json.loads(args[2]) + assert updated_data["status"] == WorkflowStatus.EXPIRED + + def test_process_expired_key_not_expired(self, mock_redis, mock_delete_func): + """Test processing of a key that is not yet expired""" + # Setup + key = "workflow_execution:wf1:exec_456" + current_time = datetime.now(timezone.utc) + recent_time = current_time - timedelta(hours=12) # 12 hours ago + results_ttl_hours = 24 + + request_data = { + "status": WorkflowStatus.COMPLETED, + "end_time": recent_time.isoformat(), + "execution_id": "exec_456", + } + + mock_redis.get.return_value = json.dumps(request_data) + + # Execute + result = _process_expired_key( + redis_client=mock_redis, + key=key, + current_time=current_time, + results_ttl_hours=results_ttl_hours, + retention_ttl=604800, + expected_status=WorkflowStatus.COMPLETED, + get_end_time_field="end_time", + delete_files_func=mock_delete_func, + log_prefix="workflow", + ) + + # Verify - should not clean up + assert result is False + mock_delete_func.assert_not_called() + mock_redis.setex.assert_not_called() + + def test_process_expired_key_key_missing(self, mock_redis, mock_delete_func): + """When Redis returns None for the key, return False without calling delete.""" + mock_redis.get.return_value = None + + result = _process_expired_key( + redis_client=mock_redis, + key="workflow_execution:wf1:exec_123", + current_time=datetime.now(timezone.utc), + results_ttl_hours=24, + retention_ttl=604800, + expected_status=WorkflowStatus.COMPLETED, + get_end_time_field="end_time", + delete_files_func=mock_delete_func, + log_prefix="workflow", + ) + + assert result is False + mock_delete_func.assert_not_called() + mock_redis.setex.assert_not_called() + + def test_process_expired_key_wrong_status(self, mock_redis, mock_delete_func): + """When status is not expected (e.g. RUNNING), return False.""" + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=25)).isoformat() + mock_redis.get.return_value = json.dumps( + {"status": WorkflowStatus.RUNNING, "end_time": old_time} + ) + + result = _process_expired_key( + redis_client=mock_redis, + key="workflow_execution:wf1:exec_123", + current_time=current_time, + results_ttl_hours=24, + retention_ttl=604800, + expected_status=WorkflowStatus.COMPLETED, + get_end_time_field="end_time", + delete_files_func=mock_delete_func, + log_prefix="workflow", + ) + + assert result is False + mock_delete_func.assert_not_called() + mock_redis.setex.assert_not_called() + + def test_process_expired_key_no_end_time(self, mock_redis, mock_delete_func): + """When end_time and completion_time are missing, return False.""" + mock_redis.get.return_value = json.dumps({"status": WorkflowStatus.COMPLETED}) + + result = _process_expired_key( + redis_client=mock_redis, + key="workflow_execution:wf1:exec_123", + current_time=datetime.now(timezone.utc), + results_ttl_hours=24, + retention_ttl=604800, + expected_status=WorkflowStatus.COMPLETED, + get_end_time_field="end_time", + delete_files_func=mock_delete_func, + log_prefix="workflow", + ) + + assert result is False + mock_delete_func.assert_not_called() + mock_redis.setex.assert_not_called() + + def test_process_expired_key_uses_completion_time_fallback( + self, mock_redis, mock_delete_func + ): + """When end_time is missing but completion_time is present, use it and expire.""" + config = get_config() + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + mock_redis.get.return_value = json.dumps( + { + "status": WorkflowStatus.COMPLETED, + "completion_time": old_time, + } + ) + + result = _process_expired_key( + redis_client=mock_redis, + key="workflow_execution:wf1:exec_old", + current_time=current_time, + results_ttl_hours=24, + retention_ttl=config.redis.retention_ttl, + expected_status=WorkflowStatus.COMPLETED, + get_end_time_field="end_time", + delete_files_func=mock_delete_func, + log_prefix="workflow", + ) + + assert result is True + mock_delete_func.assert_called_once() + mock_redis.setex.assert_called_once() + updated = json.loads(mock_redis.setex.call_args[0][2]) + assert updated["status"] == WorkflowStatus.EXPIRED + + def test_process_expired_key_invalid_timestamp(self, mock_redis, mock_delete_func): + """When timestamp is invalid, log warning and return False.""" + mock_redis.get.return_value = json.dumps( + { + "status": WorkflowStatus.COMPLETED, + "end_time": "not-a-valid-timestamp", + } + ) + + result = _process_expired_key( + redis_client=mock_redis, + key="workflow_execution:wf1:exec_123", + current_time=datetime.now(timezone.utc), + results_ttl_hours=24, + retention_ttl=604800, + expected_status=WorkflowStatus.COMPLETED, + get_end_time_field="end_time", + delete_files_func=mock_delete_func, + log_prefix="workflow", + ) + + assert result is False + mock_delete_func.assert_not_called() + mock_redis.setex.assert_not_called() + + +class TestCleanupExpiredResults: + """Test suite for cleanup_expired_results function""" + + @pytest.fixture + def mock_redis(self): + """Create a mock Redis client""" + return MagicMock() + + @pytest.fixture + def cleanup_args(self): + """Default args for cleanup_expired_results (no module-level config).""" + config = get_config() + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_output_dir.__truediv__ = lambda self, other: MagicMock( + exists=lambda: False + ) + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + return { + "results_ttl_hours": config.server.results_ttl_hours, + "retention_ttl": config.redis.retention_ttl, + "default_output_dir": mock_output_dir, + "results_zip_dir": mock_zip_dir, + } + + def test_cleanup_expired_results_workflow_only(self, mock_redis, cleanup_args): + """Test cleanup with workflow executions only""" + # Setup + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + recent_time = (current_time - timedelta(hours=12)).isoformat() + + # Mock Redis keys - only workflow keys + mock_redis.keys.return_value = [ + "workflow_execution:wf1:exec_old", + "workflow_execution:wf2:exec_recent", + ] + + # Mock Redis get responses + def get_side_effect(key): + if key == "workflow_execution:wf1:exec_old": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": old_time} + ) + elif key == "workflow_execution:wf2:exec_recent": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": recent_time} + ) + return None + + mock_redis.get.side_effect = get_side_effect + + with patch("earth2studio.serve.server.cleanup_daemon._delete_result_files"): + # Execute + cleanup_expired_results(mock_redis, **cleanup_args) + + # Verify - should process 1 workflow (exec_old), skip exec_recent + assert mock_redis.setex.call_count == 1 + + # Verify the expired key was updated + setex_calls = mock_redis.setex.call_args_list + expired_keys = [call[0][0] for call in setex_calls] + assert "workflow_execution:wf1:exec_old" in expired_keys + + def test_cleanup_expired_results_no_keys(self, mock_redis, cleanup_args): + """Test cleanup when there are no keys in Redis""" + # Setup + mock_redis.keys.return_value = [] + + # Execute + cleanup_expired_results(mock_redis, **cleanup_args) + + # Verify - no cleanup operations + mock_redis.setex.assert_not_called() + + def test_cleanup_expired_results_all_recent(self, mock_redis, cleanup_args): + """Test cleanup when all workflow keys are recent (not expired)""" + # Setup + current_time = datetime.now(timezone.utc) + recent_time = (current_time - timedelta(hours=5)).isoformat() + + mock_redis.keys.return_value = [ + "workflow_execution:wf1:exec_1", + "workflow_execution:wf2:exec_2", + ] + + mock_redis.get.return_value = json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": recent_time} + ) + + # Execute + cleanup_expired_results(mock_redis, **cleanup_args) + + # Verify - no cleanup operations (not expired) + mock_redis.setex.assert_not_called() + + def test_cleanup_expired_results_redis_get_failure(self, mock_redis, cleanup_args): + """Test cleanup handles Redis get failures gracefully""" + # Setup + mock_redis.keys.return_value = [ + "workflow_execution:wf_fail:exec_1", + "workflow_execution:wf_ok:exec_2", + ] + + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + + # First key causes exception, second succeeds + def get_side_effect(key): + if key == "workflow_execution:wf_fail:exec_1": + raise Exception("Redis connection error") + elif key == "workflow_execution:wf_ok:exec_2": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": old_time} + ) + return None + + mock_redis.get.side_effect = get_side_effect + + with (patch("earth2studio.serve.server.cleanup_daemon._delete_result_files"),): + # Execute - should not raise exception + cleanup_expired_results(mock_redis, **cleanup_args) + + # Verify - exec_2 should still be processed despite exec_1 error + assert mock_redis.setex.call_count == 1 + assert mock_redis.setex.call_args[0][0] == "workflow_execution:wf_ok:exec_2" + + def test_cleanup_expired_results_delete_files_failure( + self, mock_redis, cleanup_args + ): + """Test cleanup handles file deletion failures gracefully and does not mark as expired""" + # Setup + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + + mock_redis.keys.return_value = ["workflow_execution:wf_fail:exec_fail"] + + mock_redis.get.return_value = json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": old_time} + ) + + with patch( + "earth2studio.serve.server.cleanup_daemon._delete_result_files" + ) as mock_delete: + mock_delete.side_effect = Exception("File deletion error") + + # Execute - should handle exception and continue + cleanup_expired_results(mock_redis, **cleanup_args) + + # Verify delete was attempted + mock_delete.assert_called_once() + + # Status should NOT be updated if file deletion fails + # (we want to retry cleanup on next run) + assert mock_redis.setex.call_count == 0 + + def test_cleanup_expired_results_workflow_execution(self, mock_redis, cleanup_args): + """Test cleanup of workflow execution keys""" + # Setup + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + + mock_redis.keys.return_value = ["workflow_execution:my_workflow:exec_123"] + + mock_redis.get.return_value = json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": old_time} + ) + + with patch( + "earth2studio.serve.server.cleanup_daemon._delete_result_files" + ) as mock_delete: + # Execute + cleanup_expired_results(mock_redis, **cleanup_args) + + # Verify workflow was cleaned up + assert mock_redis.setex.call_count == 1 + assert ( + mock_redis.setex.call_args[0][0] + == "workflow_execution:my_workflow:exec_123" + ) + + # Verify delete was called with correct parameters + mock_delete.assert_called_once() + call_args = mock_delete.call_args + assert call_args[1]["result_id"] == "my_workflow:exec_123" + assert call_args[1]["search_id"] == "exec_123" + assert call_args[1]["workflow_name"] == "my_workflow" + + def test_cleanup_expired_results_custom_ttl_config(self, mock_redis): + """Test cleanup with custom TTL configuration""" + # Custom 48 hour TTL (pass as args; no module-level config) + config = get_config() + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_output_dir.__truediv__ = lambda self, other: MagicMock( + exists=lambda: False + ) + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + + current_time = datetime.now(timezone.utc) + # 30 hours ago - should NOT be expired with 48 hour TTL + time_30h_ago = (current_time - timedelta(hours=30)).isoformat() + # 50 hours ago - should be expired with 48 hour TTL + time_50h_ago = (current_time - timedelta(hours=50)).isoformat() + + mock_redis.keys.return_value = [ + "workflow_execution:wf_30h:exec_30h", + "workflow_execution:wf_50h:exec_50h", + ] + + def get_side_effect(key): + if key == "workflow_execution:wf_30h:exec_30h": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": time_30h_ago} + ) + elif key == "workflow_execution:wf_50h:exec_50h": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": time_50h_ago} + ) + return None + + mock_redis.get.side_effect = get_side_effect + + with patch("earth2studio.serve.server.cleanup_daemon._delete_result_files"): + # Execute with 48 hour TTL + cleanup_expired_results( + mock_redis, + results_ttl_hours=48, + retention_ttl=config.redis.retention_ttl, + default_output_dir=mock_output_dir, + results_zip_dir=mock_zip_dir, + ) + + # Verify - only exec_50h should be cleaned up + assert mock_redis.setex.call_count == 1 + assert ( + mock_redis.setex.call_args[0][0] == "workflow_execution:wf_50h:exec_50h" + ) + + def test_cleanup_expired_results_malformed_key_skipped( + self, mock_redis, cleanup_args + ): + """Keys with fewer than 3 parts (e.g. 'workflow_execution:incomplete') are skipped.""" + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + + mock_redis.keys.return_value = [ + "workflow_execution:incomplete", # only 2 parts + "workflow_execution:wf1:exec_old", + ] + + def get_side_effect(key): + if key == "workflow_execution:wf1:exec_old": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": old_time} + ) + return None + + mock_redis.get.side_effect = get_side_effect + + with patch("earth2studio.serve.server.cleanup_daemon._delete_result_files"): + cleanup_expired_results(mock_redis, **cleanup_args) + + # Only the valid key (exec_old) should be processed; malformed key is skipped + assert mock_redis.setex.call_count == 1 + assert mock_redis.setex.call_args[0][0] == "workflow_execution:wf1:exec_old" + + +class TestCleanupDaemonMain: + """Tests for main() daemon entrypoint.""" + + def test_main_redis_connection_failure_exits_with_one(self, tmp_path): + """When Redis connection or ping fails, main() calls sys.exit(1).""" + mock_config = MagicMock() + mock_config.paths.default_output_dir = str(tmp_path / "out") + mock_config.paths.results_zip_dir = str(tmp_path / "zip") + mock_config.server.results_ttl_hours = 24 + mock_config.server.cleanup_watchdog_sec = 60 + mock_config.redis.retention_ttl = 604800 + mock_config.redis.host = "localhost" + mock_config.redis.port = 6379 + mock_config.redis.db = 0 + mock_config.redis.password = None + mock_config.redis.decode_responses = True + mock_config.redis.socket_connect_timeout = 5 + mock_config.redis.socket_timeout = 5 + + mock_redis_instance = MagicMock() + mock_redis_instance.ping.side_effect = Exception("Connection refused") + + with ( + patch( + "earth2studio.serve.server.cleanup_daemon.get_config", + return_value=mock_config, + ), + patch( + "earth2studio.serve.server.cleanup_daemon.redis.Redis", + return_value=mock_redis_instance, + ), + patch("earth2studio.serve.server.cleanup_daemon.sys.exit") as mock_exit, + ): + mock_exit.side_effect = SystemExit(1) + with pytest.raises(SystemExit): + main() + mock_exit.assert_called_once_with(1) + + def test_main_runs_one_cycle_then_handles_keyboard_interrupt(self, tmp_path): + """When time.sleep raises KeyboardInterrupt (e.g. SIGINT), main() exits gracefully and closes Redis.""" + mock_config = MagicMock() + mock_config.paths.default_output_dir = str(tmp_path / "out") + mock_config.paths.results_zip_dir = str(tmp_path / "zip") + mock_config.server.results_ttl_hours = 24 + mock_config.server.cleanup_watchdog_sec = 60 + mock_config.redis.retention_ttl = 604800 + mock_config.redis.host = "localhost" + mock_config.redis.port = 6379 + mock_config.redis.db = 0 + mock_config.redis.password = None + mock_config.redis.decode_responses = True + mock_config.redis.socket_connect_timeout = 5 + mock_config.redis.socket_timeout = 5 + + mock_redis_instance = MagicMock() + mock_redis_instance.ping.return_value = True + mock_redis_instance.close = MagicMock() + + with ( + patch( + "earth2studio.serve.server.cleanup_daemon.get_config", + return_value=mock_config, + ), + patch( + "earth2studio.serve.server.cleanup_daemon.redis.Redis", + return_value=mock_redis_instance, + ), + patch("earth2studio.serve.server.cleanup_daemon.cleanup_expired_results"), + patch("earth2studio.serve.server.cleanup_daemon.signal.signal"), + patch( + "earth2studio.serve.server.cleanup_daemon.time.sleep", + side_effect=KeyboardInterrupt, + ), + ): + main() + mock_redis_instance.close.assert_called_once() diff --git a/test/serve/test_config.py b/test/serve/server/test_config.py similarity index 96% rename from test/serve/test_config.py rename to test/serve/server/test_config.py index 9dd7e40a5..854b1c248 100644 --- a/test/serve/test_config.py +++ b/test/serve/server/test_config.py @@ -14,12 +14,6 @@ # See the License for the specific language governing permissions and # limitations under the License. -""" -Unit tests for api_server.config module. - -Tests configuration management, environment variable overrides, and singleton behavior. -""" - import logging import os import sys @@ -48,8 +42,8 @@ mock_omegaconf.OmegaConf.to_container = MagicMock(return_value={}) # Import config after mocking dependencies (noqa: E402 - import after mocks is intentional) -# Note: service/inferenceserver path is added by conftest.py -from api_server.config import ( # noqa: E402 +# Note: serve/server path is added by conftest.py +from earth2studio.serve.server.config import ( # noqa: E402 AppConfig, ConfigManager, CORSConfig, @@ -183,7 +177,7 @@ def test_reset_config_creates_new_instance(self) -> None: # Reset clears the global reset_config() # Manually clear the instance to verify reset worked - from api_server.config import ConfigManager + from earth2studio.serve.server.config import ConfigManager old_instance = ConfigManager._instance ConfigManager._instance = None @@ -195,9 +189,9 @@ def test_reset_config_creates_new_instance(self) -> None: class TestConfigManagerInitialization: """Test ConfigManager initialization and fallback behavior""" - @patch("api_server.config.initialize_config_dir") - @patch("api_server.config.compose") - @patch("api_server.config.GlobalHydra") + @patch("earth2studio.serve.server.config.initialize_config_dir") + @patch("earth2studio.serve.server.config.compose") + @patch("earth2studio.serve.server.config.GlobalHydra") def test_initialize_config_success( self, mock_global_hydra: MagicMock, @@ -213,7 +207,7 @@ def test_initialize_config_success( mock_compose.side_effect = [mock_cfg, mock_workflow_cfg] # Mock OmegaConf.to_container - with patch("api_server.config.OmegaConf") as mock_omega: + with patch("earth2studio.serve.server.config.OmegaConf") as mock_omega: mock_omega.to_container.side_effect = [ {"redis": {"host": "test_host"}}, {"workflow1": {}}, @@ -225,8 +219,8 @@ def test_initialize_config_success( assert config is not None assert isinstance(config, AppConfig) - @patch("api_server.config.initialize_config_dir") - @patch("api_server.config.compose") + @patch("earth2studio.serve.server.config.initialize_config_dir") + @patch("earth2studio.serve.server.config.compose") def test_initialize_config_fallback_to_defaults( self, mock_compose: MagicMock, mock_init: MagicMock ) -> None: @@ -521,8 +515,8 @@ def test_setup_logging_adds_execution_id_filter(self) -> None: class TestGetWorkflowConfig: """Test get_workflow_config function""" - @patch("api_server.config.initialize_config_dir") - @patch("api_server.config.compose") + @patch("earth2studio.serve.server.config.initialize_config_dir") + @patch("earth2studio.serve.server.config.compose") def test_get_workflow_config_returns_dict( self, mock_compose: MagicMock, mock_init: MagicMock ) -> None: @@ -532,7 +526,7 @@ def test_get_workflow_config_returns_dict( mock_workflow_cfg = MagicMock() mock_compose.side_effect = [MagicMock(), mock_workflow_cfg] - with patch("api_server.config.OmegaConf") as mock_omega: + with patch("earth2studio.serve.server.config.OmegaConf") as mock_omega: mock_omega.to_container.side_effect = [ {}, # config {"test_workflow": {"param": "value"}}, # workflow_config diff --git a/test/serve/server/test_cpu_worker.py b/test/serve/server/test_cpu_worker.py new file mode 100644 index 000000000..45e2c9553 --- /dev/null +++ b/test/serve/server/test_cpu_worker.py @@ -0,0 +1,1403 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import json +import sys +import tempfile +import zipfile +from dataclasses import dataclass, field +from datetime import datetime +from typing import Literal +from unittest.mock import Mock, patch + +import pytest +import redis + + +# Create mock config classes before importing cpu_worker +@dataclass +class MockRedisConfig: + """Mock Redis configuration""" + + host: str = "localhost" + port: int = 6379 + db: int = 0 + password: str | None = None + socket_connect_timeout: int = 5 + socket_timeout: int = 5 + decode_responses: bool = True + retention_ttl: int = 604800 # Redis key retention TTL in seconds (7 days) + + +@dataclass +class MockQueueConfig: + """Mock queue configuration""" + + name: str = "inference" + result_zip_queue_name: str = "result_zip" + object_storage_queue_name: str = "object_storage" + finalize_metadata_queue_name: str = "finalize_metadata" + max_size: int = 10 + default_timeout: str = "1h" + job_timeout: str = "2h" + + +# Secure temp dir for mock path defaults (S108) +_secure_test_dir = tempfile.mkdtemp(prefix="e2s_testing_") + + +@dataclass +class MockPathsConfig: + """Mock paths configuration""" + + default_output_dir: str = field(default_factory=lambda: _secure_test_dir) + results_zip_dir: str = field(default_factory=lambda: _secure_test_dir) + output_format: Literal["zarr", "netcdf4"] = "zarr" + result_zip_enabled: bool = False + + +@dataclass +class MockLoggingConfig: + """Mock logging configuration""" + + level: str = "INFO" + format: str = "%(asctime)s - %(name)s - %(levelname)s - %(message)s" + + +@dataclass +class MockServerConfig: + """Mock server configuration""" + + host: str = "0.0.0.0" # noqa: S104 + port: int = 8000 + workers: int = 1 + title: str = "REST API" + description: str = "REST API for running workflows" + version: str = "1.0.0" + docs_url: str = "/docs" + redoc_url: str = "/redoc" + + +@dataclass +class MockCORSConfig: + """Mock CORS configuration""" + + allow_origins: list = field(default_factory=lambda: ["*"]) + allow_credentials: bool = True + allow_methods: list = field(default_factory=lambda: ["*"]) + allow_headers: list = field(default_factory=lambda: ["*"]) + + +@dataclass +class MockObjectStorageConfig: + """Mock object storage configuration""" + + enabled: bool = False + bucket: str | None = None + region: str = "us-east-1" + prefix: str = "outputs" + access_key_id: str | None = None + secret_access_key: str | None = None + session_token: str | None = None + cloudfront_domain: str | None = None + cloudfront_key_pair_id: str | None = None + cloudfront_private_key_path: str | None = None + signed_url_expires_in: int = 3600 + + +@dataclass +class MockAppConfig: + """Mock root configuration""" + + redis: MockRedisConfig = field(default_factory=MockRedisConfig) + queue: MockQueueConfig = field(default_factory=MockQueueConfig) + paths: MockPathsConfig = field(default_factory=MockPathsConfig) + logging: MockLoggingConfig = field(default_factory=MockLoggingConfig) + server: MockServerConfig = field(default_factory=MockServerConfig) + cors: MockCORSConfig = field(default_factory=MockCORSConfig) + object_storage: MockObjectStorageConfig = field( + default_factory=MockObjectStorageConfig + ) + + +# Create a mock config module +mock_config_module = Mock() +mock_config_module.AppConfig = MockAppConfig +mock_config_module.get_config = Mock(return_value=MockAppConfig()) +mock_config_module.get_config_manager = Mock() + +pytest.importorskip("earth2studio.serve.server") + +# Inject the mock before importing cpu_worker +sys.modules["earth2studio.serve.server.config"] = mock_config_module + +# Now import the module under test +from earth2studio.serve.server.cpu_worker import ( # noqa: E402 # noqa: E402 + FileManifestEntry, + ResultMetadata, + build_file_manifest, + create_results_zip, + fail_workflow, + process_finalize_metadata, + process_object_storage_upload, + process_result_zip, +) +from earth2studio.serve.server.workflow import WorkflowResult # noqa: E402 + + +class TestCreateResultsZip: + """Test suite for create_results_zip function""" + + @pytest.fixture + def mock_redis(self): + """Mock Redis client""" + return Mock(spec=redis.Redis) + + @pytest.fixture + def inference_request(self): + """Sample inference request data""" + return { + "id": "test_req_123", + "type": "deterministic", + "status": "completed", + "completion_time": "2024-01-01T12:00:00Z", + "execution_time_seconds": 45.5, + "created_at": "2024-01-01T11:00:00Z", + "peak_memory_usage": "2.5GB", + "device": "cuda:0", + "request": { + "workflow_type": "deterministic", + "time": "2024-01-01T00:00:00Z", + "nsteps": 10, + "prognostic": {"model_type": "fcn"}, + "data": {"source_type": "gfs"}, + "io": {"backend_type": "zarr"}, + }, + } + + def test_create_results_zip_with_single_file( + self, mock_redis, inference_request, tmp_path + ): + """Test creating zip with a single output file""" + # Create a temporary output file + output_file = tmp_path / "output.nc" + output_file.write_text("test data content") + file_size = output_file.stat().st_size + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_req_123", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Verify zip file was created - filename is now just request_id + assert zip_filename is not None + assert zip_filename == "test_req_123" + + zip_path = results_zip_dir / zip_filename + assert zip_path.exists() + + # Verify Redis was updated (4 times: metadata, results_zip_dir, zip, output_path) + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + + # First call: metadata (stored in Redis for finalize worker) + assert calls[0][0][0] == "inference_request:test_req_123:pending_metadata" + + # Second call: results_zip_dir path + assert calls[1][0][0] == "inference_request:test_req_123:results_zip_dir" + assert calls[1][0][2] == str(results_zip_dir) + + # Third call: zip filename + assert calls[2][0][0] == "inference_request_zips:test_req_123:zip_file" + assert calls[2][0][2] == zip_filename + + # Fourth call: output path + assert calls[3][0][0] == "inference_request:test_req_123:output_path" + assert calls[3][0][1] == 86400 # 24 hours + assert calls[3][0][2] == str(output_file) + + # Verify zip contents - metadata.json is NOT in the zip + with zipfile.ZipFile(zip_path, "r") as zf: + file_list = zf.namelist() + assert "metadata.json" not in file_list # metadata is now separate + assert "output.nc" in file_list + + # Verify metadata is stored in Redis (not as file - file is created by finalize worker) + # Get the metadata from the first setex call + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Verify metadata structure + assert metadata["request_id"] == "test_req_123" + assert metadata["status"] == "completed" + assert metadata["workflow_type"] == "deterministic" + assert metadata["execution_time_seconds"] == 45.5 + assert metadata["device"] == "cuda:0" + assert "zip_created_at" in metadata + + # Verify parameters field + assert "parameters" in metadata + assert metadata["parameters"] == inference_request["request"] + assert metadata["parameters"]["workflow_type"] == "deterministic" + assert metadata["parameters"]["nsteps"] == 10 + + # Verify output_files manifest includes both the file AND the zip + assert "output_files" in metadata + assert isinstance(metadata["output_files"], list) + assert len(metadata["output_files"]) == 2 # output.nc + zip file entry + + # Convert to dict for easier checking + files_dict = {f["path"]: f["size"] for f in metadata["output_files"]} + + # Check the output file entry + assert "output.nc" in files_dict + assert files_dict["output.nc"] == file_size + + # Check the zip file entry (path = request_id) + assert "test_req_123" in files_dict + assert files_dict["test_req_123"] == zip_path.stat().st_size + + def test_create_results_zip_with_directory( + self, mock_redis, inference_request, tmp_path + ): + """Test creating zip with a directory containing multiple files""" + # Create a temporary output directory with files + output_dir = tmp_path / "output_data" + output_dir.mkdir() + + file1 = output_dir / "data1.nc" + file1.write_text("data 1 content") + file1_size = file1.stat().st_size + + file2 = output_dir / "data2.nc" + file2.write_text("data 2 content with more text") + file2_size = file2.stat().st_size + + # Create subdirectory + subdir = output_dir / "plots" + subdir.mkdir() + file3 = subdir / "plot.png" + file3.write_bytes(b"fake png data") + file3_size = file3.stat().st_size + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_req_456", + output_path=output_dir, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Verify zip file was created - filename is now just request_id + assert zip_filename is not None + assert zip_filename == "test_req_456" + zip_path = results_zip_dir / zip_filename + assert zip_path.exists() + + # Verify zip contents - metadata.json is NOT in the zip + with zipfile.ZipFile(zip_path, "r") as zf: + file_list = zf.namelist() + assert "metadata.json" not in file_list + + # Verify files exist in zip + assert "output_data/data1.nc" in file_list + assert "output_data/data2.nc" in file_list + assert "output_data/plots/plot.png" in file_list + + # Verify metadata is stored in Redis (not as file) + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Verify output_files manifest (3 files + 1 zip entry) + assert "output_files" in metadata + output_files = metadata["output_files"] + assert len(output_files) == 4 # 3 files + zip entry + + # Convert to dict for easier checking + files_dict = {f["path"]: f["size"] for f in output_files} + + # Verify all files are in manifest with correct sizes + assert "output_data/data1.nc" in files_dict + assert files_dict["output_data/data1.nc"] == file1_size + + assert "output_data/data2.nc" in files_dict + assert files_dict["output_data/data2.nc"] == file2_size + + assert "output_data/plots/plot.png" in files_dict + assert files_dict["output_data/plots/plot.png"] == file3_size + + # Verify zip file entry (path = request_id) + assert "test_req_456" in files_dict + assert files_dict["test_req_456"] == zip_path.stat().st_size + + def test_create_results_zip_with_nonexistent_output( + self, mock_redis, inference_request, tmp_path + ): + """Test creating zip when output path doesn't exist""" + # Use nonexistent path + output_path = tmp_path / "nonexistent" + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_req_789", + output_path=output_path, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Should still create zip - filename is now just request_id + assert zip_filename is not None + assert zip_filename == "test_req_789" + zip_path = results_zip_dir / zip_filename + assert zip_path.exists() + + # Verify zip contents - should be empty (no output files) + with zipfile.ZipFile(zip_path, "r") as zf: + file_list = zf.namelist() + assert len(file_list) == 0 # No files in zip + + # Verify metadata is stored in Redis (not as file) + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # output_files should only contain the zip entry + assert "output_files" in metadata + assert len(metadata["output_files"]) == 1 # Only zip entry + assert metadata["output_files"][0]["path"] == "test_req_789" + + def test_create_results_zip_parameters_validation( + self, mock_redis, inference_request, tmp_path + ): + """Test that parameters are correctly stored in metadata""" + # Create a temporary output file + output_file = tmp_path / "output.nc" + output_file.write_text("test") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Modify inference request to have specific parameters + inference_request["request"] = { + "workflow_type": "ensemble", + "time": "2024-01-15T00:00:00Z", + "nsteps": 20, + "nensemble": 10, + "prognostic": {"model_type": "graphcast"}, + "data": {"source_type": "era5"}, + "io": {"backend_type": "netcdf"}, + "perturbation": {"method": "spherical_gaussian"}, + } + + # Call create_results_zip + result = create_results_zip( + request_id="test_req_params", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + assert result is not None + + # Verify metadata is stored in Redis (not as file) + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Verify parameters field exists and matches + assert "parameters" in metadata + params = metadata["parameters"] + + assert params["workflow_type"] == "ensemble" + assert params["time"] == "2024-01-15T00:00:00Z" + assert params["nsteps"] == 20 + assert params["nensemble"] == 10 + assert params["prognostic"]["model_type"] == "graphcast" + assert params["data"]["source_type"] == "era5" + assert params["io"]["backend_type"] == "netcdf" + assert params["perturbation"]["method"] == "spherical_gaussian" + + def test_create_results_zip_file_manifest_structure( + self, mock_redis, inference_request, tmp_path + ): + """Test that file manifest has correct structure""" + # Create output directory with multiple files + output_dir = tmp_path / "outputs" + output_dir.mkdir() + + for i in range(5): + file = output_dir / f"file_{i}.dat" + file.write_text(f"content {i}" * 100) + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_manifest", + output_path=output_dir, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Verify metadata is stored in Redis + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + manifest = metadata["output_files"] + + # Verify manifest structure (5 files + 1 zip entry) + assert isinstance(manifest, list) + assert len(manifest) == 6 # 5 files + zip entry + + # Find the zip entry (path = request_id) + zip_entry = None + file_entries = [] + for entry in manifest: + if entry["path"] == "test_manifest": + zip_entry = entry + else: + file_entries.append(entry) + + assert zip_entry is not None + assert len(file_entries) == 5 + + # Verify file entries structure + zip_path = results_zip_dir / zip_filename + with zipfile.ZipFile(zip_path, "r") as zf: + for entry in file_entries: + assert isinstance(entry, dict) + assert "path" in entry + assert "size" in entry + assert isinstance(entry["path"], str) + assert isinstance(entry["size"], int) + assert entry["size"] > 0 + + # Verify path starts with output directory name + assert entry["path"].startswith("outputs/") + + # Verify size matches actual file in zip + actual_size = zf.getinfo(entry["path"]).file_size + assert entry["size"] == actual_size + + def test_create_results_zip_missing_request_parameters(self, mock_redis, tmp_path): + """Test handling when request doesn't have parameters field""" + # Create inference request without 'request' field + inference_request = { + "id": "test_req_no_params", + "type": "deterministic", + "status": "completed", + } + + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_req_no_params", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Verify zip was created + assert zip_filename is not None + + # Verify metadata stored in Redis - parameters should be None + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Parameters should be None or not present + assert metadata.get("parameters") is None + + def test_create_results_zip_redis_failure( + self, mock_redis, inference_request, tmp_path + ): + """Test handling when Redis operation fails""" + # Make Redis setex raise an exception + mock_redis.setex.side_effect = Exception("Redis connection failed") + + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip - should handle exception gracefully + zip_filename = create_results_zip( + request_id="test_redis_fail", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Should return None since storing in Redis failed + assert zip_filename is None + + def test_create_results_zip_exception_handling(self, mock_redis, tmp_path): + """Test general exception handling""" + # Use invalid inference request that will cause issues + invalid_request = None + + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip with invalid data + zip_filename = create_results_zip( + request_id="test_exception", + output_path=output_file, + inference_request=invalid_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Should return None on exception + assert zip_filename is None + + def test_create_results_zip_metadata_completeness( + self, mock_redis, inference_request, tmp_path + ): + """Test that all expected metadata fields are present""" + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test data") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_metadata", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + assert zip_filename is not None + + # Verify metadata stored in Redis + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Check all expected fields + required_fields = [ + "request_id", + "status", + "completion_time", + "execution_time_seconds", + "workflow_type", + "created_at", + "peak_memory_usage", + "device", + "zip_created_at", + "parameters", + "output_files", + ] + + for f in required_fields: + assert f in metadata, f"Missing required field: {f}" + + # Verify zip_created_at is a valid timestamp + zip_created_at = metadata["zip_created_at"] + assert zip_created_at.endswith("Z") + # Should be parseable as ISO format + datetime.fromisoformat(zip_created_at.replace("Z", "+00:00")) + + def test_create_results_zip_manifest_includes_zip_entry( + self, mock_redis, inference_request, tmp_path + ): + """Test that the manifest includes an entry for the zip file itself""" + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test data content") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + request_id = "test_zip_entry" + + # Call create_results_zip + zip_filename = create_results_zip( + request_id=request_id, + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + assert zip_filename is not None + + zip_path = results_zip_dir / zip_filename + zip_size = zip_path.stat().st_size + + # Verify metadata stored in Redis + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Find the zip entry in manifest + zip_entry = None + for entry in metadata["output_files"]: + if entry["path"] == request_id: + zip_entry = entry + break + + # Verify zip entry exists and has correct size + assert zip_entry is not None, "Zip file entry not found in manifest" + assert zip_entry["path"] == request_id + assert zip_entry["size"] == zip_size + + def test_create_results_zip_output_path_stored_in_redis( + self, mock_redis, inference_request, tmp_path + ): + """Test that output path is stored in Redis""" + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test data") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_output_path", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + assert zip_filename is not None + + # Verify Redis setex was called 4 times (metadata, results_zip_dir, zip, output_path) + assert mock_redis.setex.call_count == 4 + + # Check the output path call (4th call) + calls = mock_redis.setex.call_args_list + output_path_call = calls[3] + + assert ( + output_path_call[0][0] == "inference_request:test_output_path:output_path" + ) + assert output_path_call[0][1] == 86400 # 24 hours + assert output_path_call[0][2] == str(output_file) + + def test_create_results_zip_manifest_only_no_zip( + self, mock_redis, inference_request, tmp_path + ): + """Test create_results_zip with create_zip=False: no zip file, manifest only.""" + output_dir = tmp_path / "out" + output_dir.mkdir() + (output_dir / "a.nc").write_text("data") + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + result = create_results_zip( + request_id="req_manifest_only", + output_path=output_dir, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + create_zip=False, + ) + + assert result is None # No zip filename when create_zip=False + assert not (results_zip_dir / "req_manifest_only").exists() + # Metadata should still be stored (manifest only) + assert mock_redis.setex.call_count >= 3 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + assert len(metadata["output_files"]) == 1 # Just the one file, no zip entry + + def test_create_results_zip_with_workflow_result(self, mock_redis, tmp_path): + """Test create_results_zip with WorkflowResult (custom workflow) path.""" + output_file = tmp_path / "out.nc" + output_file.write_text("data") + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + workflow_result = WorkflowResult( + workflow_name="my_workflow", + execution_id="exec_1", + status="completed", + start_time="2024-01-01T10:00:00Z", + end_time="2024-01-01T11:00:00Z", + execution_time_seconds=60.0, + metadata={ + "peak_memory_usage": "1GB", + "device": "cuda:0", + "parameters": {"nsteps": 5}, + }, + ) + + zip_filename = create_results_zip( + request_id="my_workflow:exec_1", + output_path=output_file, + inference_request=workflow_result, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + assert zip_filename is not None + metadata_json = mock_redis.setex.call_args_list[0][0][2] + metadata = json.loads(metadata_json) + assert metadata.get("workflow_name") == "my_workflow" + # from_workflow_result uses workflow_result.execution_id for request_id when set + assert metadata.get("request_id") == "exec_1" + assert metadata.get("peak_memory_usage") == "1GB" + assert metadata.get("parameters", {}).get("nsteps") == 5 + + def test_create_results_zip_invalid_type_returns_none(self, mock_redis, tmp_path): + """Test that invalid inference_request type is handled (exception caught, returns None).""" + output_file = tmp_path / "out.nc" + output_file.write_text("data") + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + result = create_results_zip( + request_id="req_invalid", + output_path=output_file, + inference_request=[], # list is not dict or WorkflowResult + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + assert result is None + + +class TestFailWorkflow: + """Tests for fail_workflow.""" + + def test_fail_workflow_returns_error_dict(self): + """fail_workflow returns success=False and error message.""" + out = fail_workflow("w", "e1", "Something failed") + assert out["success"] is False + assert out["error"] == "Something failed" + + def test_fail_workflow_updates_redis_when_workflow_registered(self): + """When workflow is in registry, _update_execution_data is called.""" + mock_workflow_class = Mock() + mock_workflow_class._update_execution_data = Mock() + + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + mock_registry.get_workflow_class.return_value = mock_workflow_class + with patch("earth2studio.serve.server.cpu_worker.redis_client"): + out = fail_workflow("my_wf", "exec_1", "Failed") + + assert out["success"] is False + mock_workflow_class._update_execution_data.assert_called_once() + call_args = mock_workflow_class._update_execution_data.call_args + assert call_args[0][1] == "my_wf" + assert call_args[0][2] == "exec_1" + assert call_args[0][3]["status"] == "failed" + assert call_args[0][3]["error_message"] == "Failed" + + def test_fail_workflow_exception_still_returns_dict(self): + """When _update_execution_data raises, we still return error dict.""" + mock_workflow_class = Mock() + mock_workflow_class._update_execution_data.side_effect = Exception("Redis down") + + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + mock_registry.get_workflow_class.return_value = mock_workflow_class + out = fail_workflow("w", "e1", "Err") + + assert out["success"] is False + assert out["error"] == "Err" + + +class TestBuildFileManifest: + """Tests for build_file_manifest.""" + + def test_build_file_manifest_single_file(self, tmp_path): + """Single file returns one entry.""" + f = tmp_path / "a.nc" + f.write_text("x") + entries = build_file_manifest(f) + assert len(entries) == 1 + assert entries[0].path == "a.nc" + assert entries[0].size == f.stat().st_size + + def test_build_file_manifest_directory_with_subdirs(self, tmp_path): + """Directory with subdirs is scanned recursively.""" + d = tmp_path / "out" + d.mkdir() + (d / "a.nc").write_text("a") + sub = d / "sub" + sub.mkdir() + (sub / "b.nc").write_text("bb") + entries = build_file_manifest(d) + assert len(entries) == 2 + paths = {e.path for e in entries} + assert "out/a.nc" in paths + assert "out/sub/b.nc" in paths + + def test_build_file_manifest_with_arc_prefix(self, tmp_path): + """arc_prefix is applied to paths.""" + f = tmp_path / "f.nc" + f.write_text("x") + entries = build_file_manifest(f, arc_prefix="prefix") + assert len(entries) == 1 + assert entries[0].path == "prefix/f.nc" + + def test_build_file_manifest_nonexistent_returns_empty(self, tmp_path): + """Nonexistent path returns empty list.""" + entries = build_file_manifest(tmp_path / "nonexistent") + assert entries == [] + + +class TestResultMetadata: + """Tests for ResultMetadata factory methods and to_dict.""" + + def test_from_workflow_result(self): + """ResultMetadata.from_workflow_result sets workflow_name and metadata.""" + wr = WorkflowResult( + workflow_name="custom_wf", + execution_id="exec_1", + status="completed", + start_time="2024-01-01T10:00:00Z", + end_time="2024-01-01T11:00:00Z", + execution_time_seconds=30.0, + metadata={"peak_memory_usage": "2GB", "parameters": {"n": 1}}, + ) + manifest = [FileManifestEntry(path="out.nc", size=100)] + meta = ResultMetadata.from_workflow_result( + wr, "exec_1", manifest, "2024-01-01T12:00:00Z" + ) + assert meta.request_id == "exec_1" + assert meta.workflow_name == "custom_wf" + assert meta.status == "completed" + assert meta.parameters == {"n": 1} + assert meta.output_files == manifest + + def test_from_legacy_dict(self): + """ResultMetadata.from_legacy_dict sets workflow_type from dict.""" + req = { + "status": "completed", + "completion_time": "2024-01-01T11:00:00Z", + "execution_time_seconds": 10.0, + "type": "deterministic", + "created_at": "2024-01-01T10:00:00Z", + "request": {"nsteps": 5}, + } + manifest = [FileManifestEntry(path="out.zarr", size=200)] + meta = ResultMetadata.from_legacy_dict( + req, "req_123", manifest, "2024-01-01T12:00:00Z" + ) + assert meta.request_id == "req_123" + assert meta.workflow_type == "deterministic" + assert meta.parameters == {"nsteps": 5} + + def test_to_dict_includes_workflow_name_and_type(self): + """to_dict includes workflow_name or workflow_type when set.""" + meta = ResultMetadata( + request_id="r1", + status="completed", + completion_time=None, + execution_time_seconds=None, + workflow_name="my_wf", + workflow_type=None, + output_files=[], + ) + d = meta.to_dict() + assert d["workflow_name"] == "my_wf" + assert "workflow_type" not in d + + meta2 = ResultMetadata( + request_id="r2", + status="completed", + completion_time=None, + execution_time_seconds=None, + workflow_type="ensemble", + output_files=[], + ) + d2 = meta2.to_dict() + assert d2["workflow_type"] == "ensemble" + assert "workflow_name" not in d2 + + def test_to_dict_includes_signed_url_and_remote_path(self): + """to_dict includes signed_url and remote_path when set.""" + meta = ResultMetadata( + request_id="r1", + status="completed", + completion_time=None, + execution_time_seconds=None, + signed_url="https://s3.example.com/signed", + remote_path="outputs/r1/out.nc", + output_files=[], + ) + d = meta.to_dict() + assert d["signed_url"] == "https://s3.example.com/signed" + assert d["remote_path"] == "outputs/r1/out.nc" + + +class TestProcessResultZip: + """Tests for process_result_zip RQ worker function.""" + + def test_process_result_zip_success_returns_zip_filename(self, tmp_path): + """process_result_zip with valid workflow and create_zip returns zip filename.""" + output_file = tmp_path / "out.nc" + output_file.write_text("data") + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + mock_workflow_class = Mock() + mock_workflow_class._get_execution_data.return_value = { + "id": "wf:exec_1", + "type": "deterministic", + "status": "completed", + } + mock_workflow_class._update_execution_data = Mock() + + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + with patch( + "earth2studio.serve.server.cpu_worker.redis_client" + ) as mock_redis: + with patch( + "earth2studio.serve.server.cpu_worker.queue_next_stage" + ) as mock_queue_next: + mock_registry.get_workflow_class.return_value = mock_workflow_class + mock_redis.setex = Mock() + mock_queue_next.return_value = "job_123" + + result = process_result_zip( + workflow_name="test_wf", + execution_id="exec_1", + output_path_str=str(output_file), + results_zip_dir_str=str(results_zip_dir), + create_zip=True, + ) + + assert result is not None + assert result == "test_wf:exec_1" # zip filename is request_id + mock_queue_next.assert_called_once_with( + redis_client=mock_redis, + current_stage="result_zip", + workflow_name="test_wf", + execution_id="exec_1", + output_path_str=str(output_file), + results_zip_dir_str=str(results_zip_dir), + ) + + def test_process_result_zip_workflow_not_found_raises(self, tmp_path): + """process_result_zip when workflow not in registry raises after fail_workflow.""" + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + with patch( + "earth2studio.serve.server.cpu_worker.fail_workflow" + ) as mock_fail: + mock_registry.get_workflow_class.return_value = None + + with pytest.raises(ValueError, match="not found in registry"): + process_result_zip( + workflow_name="nonexistent", + execution_id="e1", + output_path_str=str(tmp_path / "out"), + results_zip_dir_str=str(tmp_path / "zip"), + ) + mock_fail.assert_called_once() + + def test_process_result_zip_queue_next_stage_returns_none(self, tmp_path): + """When queue_next_stage returns None, fail_workflow is called and function returns None.""" + output_file = tmp_path / "out.nc" + output_file.write_text("data") + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + mock_workflow_class = Mock() + mock_workflow_class._get_execution_data.return_value = { + "type": "deterministic", + "status": "completed", + } + + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + with patch( + "earth2studio.serve.server.cpu_worker.redis_client" + ) as mock_redis: + with patch( + "earth2studio.serve.server.cpu_worker.queue_next_stage" + ) as mock_queue_next: + with patch( + "earth2studio.serve.server.cpu_worker.fail_workflow" + ) as mock_fail: + mock_registry.get_workflow_class.return_value = ( + mock_workflow_class + ) + mock_redis.setex = Mock() + mock_queue_next.return_value = None + + result = process_result_zip( + workflow_name="test_wf", + execution_id="exec_1", + output_path_str=str(output_file), + results_zip_dir_str=str(results_zip_dir), + create_zip=True, + ) + + assert result is None + mock_fail.assert_called_once() + assert "queue next pipeline stage" in mock_fail.call_args[0][2].lower() + + def test_process_result_zip_manifest_only_returns_manifest_only(self, tmp_path): + """When create_zip=False and flow succeeds, returns 'manifest_only'.""" + output_file = tmp_path / "out.nc" + output_file.write_text("data") + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + mock_workflow_class = Mock() + mock_workflow_class._get_execution_data.return_value = { + "type": "deterministic", + "status": "completed", + } + + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + with patch( + "earth2studio.serve.server.cpu_worker.redis_client" + ) as mock_redis: + with patch( + "earth2studio.serve.server.cpu_worker.queue_next_stage" + ) as mock_queue_next: + mock_registry.get_workflow_class.return_value = mock_workflow_class + mock_redis.setex = Mock() + mock_queue_next.return_value = "job_123" + + result = process_result_zip( + workflow_name="test_wf", + execution_id="exec_1", + output_path_str=str(output_file), + results_zip_dir_str=str(results_zip_dir), + create_zip=False, + ) + + assert result == "manifest_only" + + def test_process_result_zip_create_fails_returns_none(self, tmp_path): + """When create_results_zip returns None (create_zip=True), fail_workflow and return None.""" + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + # Nonexistent output path so create_results_zip may still build manifest but we can mock return + output_path_str = str(tmp_path / "nonexistent") + + mock_workflow_class = Mock() + mock_workflow_class._get_execution_data.return_value = { + "type": "deterministic", + "status": "completed", + } + + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + with patch( + "earth2studio.serve.server.cpu_worker.redis_client" + ) as mock_redis: + with patch("earth2studio.serve.server.cpu_worker.queue_next_stage"): + with patch( + "earth2studio.serve.server.cpu_worker.create_results_zip" + ) as mock_create: + with patch( + "earth2studio.serve.server.cpu_worker.fail_workflow" + ) as mock_fail: + mock_registry.get_workflow_class.return_value = ( + mock_workflow_class + ) + mock_redis.setex = Mock() + mock_create.return_value = None # zip creation failed + + result = process_result_zip( + workflow_name="test_wf", + execution_id="exec_1", + output_path_str=output_path_str, + results_zip_dir_str=str(results_zip_dir), + create_zip=True, + ) + + assert result is None + mock_fail.assert_called_once() + assert "create results zip" in mock_fail.call_args[0][2].lower() + + +class TestProcessFinalizeMetadata: + """Tests for process_finalize_metadata RQ worker function.""" + + def test_process_finalize_metadata_success(self, tmp_path): + """process_finalize_metadata writes metadata file and updates workflow status.""" + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + request_id = "my_wf:exec_1" + + metadata_key = f"inference_request:{request_id}:pending_metadata" + results_zip_dir_key = f"inference_request:{request_id}:results_zip_dir" + storage_info_key = f"inference_request:{request_id}:storage_info" + + pending_metadata = { + "request_id": request_id, + "status": "completed", + "output_files": [], + "storage_type": "server", + } + mock_workflow_class = Mock() + mock_workflow_class._update_execution_data = Mock() + + with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + mock_redis.get.side_effect = lambda k: { + metadata_key: json.dumps(pending_metadata), + results_zip_dir_key: str(results_zip_dir), + storage_info_key: None, + }.get(k) + mock_registry.get_workflow_class.return_value = mock_workflow_class + + result = process_finalize_metadata( + workflow_name="my_wf", + execution_id="exec_1", + ) + + assert result is not None + assert result["success"] is True + assert "metadata_path" in result + metadata_path = tmp_path / "results" / f"metadata_{request_id}.json" + assert metadata_path.exists() + mock_workflow_class._update_execution_data.assert_called_once() + mock_redis.delete.assert_any_call(metadata_key) + mock_redis.delete.assert_any_call(results_zip_dir_key) + + def test_process_finalize_metadata_missing_pending_metadata_returns_failure(self): + """When pending metadata or results_zip_dir is missing in Redis, returns fail_workflow dict.""" + with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: + with patch( + "earth2studio.serve.server.cpu_worker.fail_workflow" + ) as mock_fail: + mock_redis.get.return_value = None + mock_fail.return_value = { + "success": False, + "error": "Pending metadata not found", + } + + result = process_finalize_metadata( + workflow_name="my_wf", + execution_id="exec_1", + ) + + assert result is not None and result.get("success") is False + mock_fail.assert_called_once() + assert "not found" in mock_fail.call_args[0][2].lower() + + def test_process_finalize_metadata_workflow_not_found_returns_failure( + self, tmp_path + ): + """When workflow class is not in registry, returns fail_workflow dict.""" + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + request_id = "my_wf:exec_1" + metadata_key = f"inference_request:{request_id}:pending_metadata" + results_zip_dir_key = f"inference_request:{request_id}:results_zip_dir" + + with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + with patch( + "earth2studio.serve.server.cpu_worker.fail_workflow" + ) as mock_fail: + mock_redis.get.side_effect = lambda k: { + metadata_key: json.dumps({"request_id": request_id}), + results_zip_dir_key: str(results_zip_dir), + }.get(k) + mock_registry.get_workflow_class.return_value = None + mock_fail.return_value = { + "success": False, + "error": "Workflow class not found", + } + + result = process_finalize_metadata( + workflow_name="my_wf", + execution_id="exec_1", + ) + + assert result is not None and result.get("success") is False + mock_fail.assert_called_once() + assert "not found" in mock_fail.call_args[0][2].lower() + + def test_process_finalize_metadata_with_storage_info(self, tmp_path): + """When storage_info is in Redis, it is applied to metadata and key is deleted.""" + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + request_id = "my_wf:exec_1" + storage_info_key = f"inference_request:{request_id}:storage_info" + pending_metadata = {"request_id": request_id, "status": "completed"} + storage_info = { + "storage_type": "s3", + "remote_path": "s3://bucket/prefix", + "signed_url": "https://signed.example.com", + } + + mock_workflow_class = Mock() + mock_workflow_class._update_execution_data = Mock() + + with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: + with patch( + "earth2studio.serve.server.cpu_worker.workflow_registry" + ) as mock_registry: + mock_redis.get.side_effect = lambda k: { + f"inference_request:{request_id}:pending_metadata": json.dumps( + pending_metadata + ), + f"inference_request:{request_id}:results_zip_dir": str( + results_zip_dir + ), + storage_info_key: json.dumps(storage_info), + }.get(k) + mock_registry.get_workflow_class.return_value = mock_workflow_class + + result = process_finalize_metadata( + workflow_name="my_wf", + execution_id="exec_1", + ) + + assert result is not None + assert result["storage_type"] == "s3" + mock_redis.delete.assert_any_call(storage_info_key) + metadata_path = tmp_path / "results" / f"metadata_{request_id}.json" + data = json.loads(metadata_path.read_text()) + assert data.get("signed_url") == "https://signed.example.com" + assert data.get("remote_path") == "s3://bucket/prefix" + + +class TestProcessObjectStorageUpload: + """Tests for process_object_storage_upload RQ worker function.""" + + def test_process_object_storage_upload_disabled_queues_finalize(self, tmp_path): + """When object storage is disabled, skips upload and queues finalize_metadata.""" + output_dir = tmp_path / "out" + output_dir.mkdir() + (output_dir / "f.nc").write_text("data") + + with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: + with patch("earth2studio.serve.server.cpu_worker.config") as mock_config: + with patch( + "earth2studio.serve.server.cpu_worker.queue_next_stage" + ) as mock_queue_next: + mock_config.object_storage.enabled = False + mock_config.object_storage.bucket = None + mock_redis.setex = Mock() + mock_queue_next.return_value = "job_1" + + result = process_object_storage_upload( + workflow_name="wf", + execution_id="exec_1", + output_path_str=str(output_dir), + ) + + assert result is not None + assert result["success"] is True + assert result["storage_type"] == "server" + mock_queue_next.assert_called_once_with( + redis_client=mock_redis, + current_stage="object_storage", + workflow_name="wf", + execution_id="exec_1", + output_path_str=str(output_dir), + ) + + def test_process_object_storage_upload_output_path_missing_returns_failure(self): + """When object storage enabled but output path does not exist, returns fail_workflow dict.""" + with patch("earth2studio.serve.server.cpu_worker.config") as mock_config: + with patch( + "earth2studio.serve.server.cpu_worker.fail_workflow" + ) as mock_fail: + mock_config.object_storage.enabled = True + mock_config.object_storage.bucket = "my-bucket" + mock_fail.return_value = { + "success": False, + "error": "Output path does not exist", + } + + result = process_object_storage_upload( + workflow_name="wf", + execution_id="exec_1", + output_path_str="/nonexistent/path", + ) + + assert result is not None and result.get("success") is False + mock_fail.assert_called_once() + assert "does not exist" in mock_fail.call_args[0][2] + + +if __name__ == "__main__": + pytest.main([__file__, "-v"]) diff --git a/test/serve/server/test_object_storage.py b/test/serve/server/test_object_storage.py new file mode 100644 index 000000000..907441cc2 --- /dev/null +++ b/test/serve/server/test_object_storage.py @@ -0,0 +1,294 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import base64 +import sys +import tempfile +from pathlib import Path +from unittest.mock import MagicMock, patch + +import pytest + +from earth2studio.serve.server.object_storage import ( + MSCObjectStorage, + ObjectStorage, + ObjectStorageError, + UploadResult, +) + + +class TestUploadResult: + """Tests for UploadResult dataclass.""" + + def test_repr_success(self): + """__repr__ shows SUCCESS when success is True.""" + r = UploadResult( + success=True, + files_uploaded=10, + total_bytes=1000, + destination="s3://bucket/prefix", + errors=[], + ) + assert "SUCCESS" in repr(r) + assert "files=10" in repr(r) + assert "bytes=1000" in repr(r) + + def test_repr_failed(self): + """__repr__ shows FAILED when success is False.""" + r = UploadResult( + success=False, + files_uploaded=0, + total_bytes=0, + destination="s3://bucket/prefix", + errors=["error1"], + ) + assert "FAILED" in repr(r) + + +class TestObjectStorageError: + """Tests for ObjectStorageError.""" + + def test_is_exception(self): + """ObjectStorageError is a subclass of Exception.""" + assert issubclass(ObjectStorageError, Exception) + + def test_raise_and_catch(self): + """Can raise and catch ObjectStorageError with message.""" + with pytest.raises(ObjectStorageError, match="test message"): + raise ObjectStorageError("test message") + + +class TestObjectStorage: + """Tests for ObjectStorage abstract base class.""" + + def test_cannot_instantiate_directly(self): + """ObjectStorage cannot be instantiated (abstract).""" + with pytest.raises(TypeError): + ObjectStorage() + + +class TestMSCObjectStorage: + """Tests for MSCObjectStorage (with mocked multistorageclient).""" + + @pytest.fixture + def mock_msc(self): + """Mock multistorageclient module so MSCObjectStorage can be instantiated.""" + mock_module = MagicMock() + mock_module.StorageClientConfig.from_dict.side_effect = [ + MagicMock(), + MagicMock(), + ] + mock_module.StorageClient.return_value = MagicMock() + with patch.dict(sys.modules, {"multistorageclient": mock_module}): + yield mock_module + + def test_init_requires_multistorageclient(self): + """MSCObjectStorage raises ImportError if multistorageclient is not available.""" + import builtins + + real_import = builtins.__import__ + + def fail_msc(name, *args, **kwargs): + if name == "multistorageclient": + raise ImportError("No module named 'multistorageclient'") + return real_import(name, *args, **kwargs) + + with patch.object(builtins, "__import__", side_effect=fail_msc): + with pytest.raises(ImportError, match="multi-storage-client"): + MSCObjectStorage(bucket="my-bucket") + + def test_upload_directory_raises_when_dir_not_found(self, mock_msc): + """upload_directory raises FileNotFoundError when path does not exist.""" + storage = MSCObjectStorage(bucket="b", region="us-east-1") + + with pytest.raises(FileNotFoundError, match="not found"): + storage.upload_directory( + local_directory="/nonexistent/path", + remote_prefix="prefix", + ) + + def test_upload_directory_raises_when_path_not_directory(self, mock_msc): + """upload_directory raises ValueError when path is not a directory.""" + with tempfile.NamedTemporaryFile(suffix=".txt", delete=False) as f: + file_path = f.name + try: + storage = MSCObjectStorage(bucket="b", region="us-east-1") + + with pytest.raises(ValueError, match="not a directory"): + storage.upload_directory( + local_directory=file_path, + remote_prefix="prefix", + ) + finally: + Path(file_path).unlink(missing_ok=True) + + def test_upload_directory_success_returns_upload_result(self, mock_msc): + """upload_directory returns UploadResult with success when sync_from succeeds.""" + with tempfile.TemporaryDirectory() as tmpdir: + (Path(tmpdir) / "f1.txt").write_text("hello") + storage = MSCObjectStorage(bucket="b", region="us-east-1") + storage._s3_client.sync_from.return_value = None + + result = storage.upload_directory( + local_directory=tmpdir, + remote_prefix="prefix", + ) + + assert isinstance(result, UploadResult) + assert result.success is True + assert result.files_uploaded == 1 + assert result.total_bytes == 5 + assert "s3://b/prefix" in result.destination + assert result.errors == [] + + def test_upload_directory_failure_appends_errors(self, mock_msc): + """upload_directory returns success=False and appends error when sync_from raises.""" + with tempfile.TemporaryDirectory() as tmpdir: + (Path(tmpdir) / "f1.txt").write_text("x") + storage = MSCObjectStorage(bucket="b", region="us-east-1") + storage._s3_client.sync_from.side_effect = Exception("sync failed") + + result = storage.upload_directory( + local_directory=tmpdir, + remote_prefix="prefix", + ) + + assert result.success is False + assert result.files_uploaded == 0 + assert len(result.errors) == 1 + assert "sync failed" in result.errors[0] + + def test_upload_file_returns_false_when_file_not_found(self, mock_msc): + """upload_file returns False when local file does not exist.""" + storage = MSCObjectStorage(bucket="b", region="us-east-1") + + assert ( + storage.upload_file( + local_file="/nonexistent/file.txt", + remote_key="key.txt", + ) + is False + ) + + def test_upload_file_returns_true_on_success(self, mock_msc): + """upload_file returns True when upload succeeds.""" + with tempfile.NamedTemporaryFile(suffix=".txt", delete=False) as f: + f.write(b"data") + path = f.name + try: + storage = MSCObjectStorage(bucket="b", region="us-east-1") + + result = storage.upload_file( + local_file=path, + remote_key="key.txt", + ) + assert result is True + storage._s3_client.upload_file.assert_called_once() + finally: + Path(path).unlink(missing_ok=True) + + def test_upload_file_returns_false_on_exception(self, mock_msc): + """upload_file returns False when upload_file raises.""" + with tempfile.NamedTemporaryFile(suffix=".txt", delete=False) as f: + path = f.name + try: + storage = MSCObjectStorage(bucket="b", region="us-east-1") + storage._s3_client.upload_file.side_effect = Exception("upload failed") + + result = storage.upload_file( + local_file=path, + remote_key="key.txt", + ) + assert result is False + finally: + Path(path).unlink(missing_ok=True) + + def test_file_exists_returns_true_when_info_succeeds(self, mock_msc): + """file_exists returns True when info() does not raise.""" + storage = MSCObjectStorage(bucket="b", region="us-east-1") + storage._s3_client.info.return_value = None + + assert storage.file_exists("my/key") is True + + def test_file_exists_returns_false_when_file_not_found(self, mock_msc): + """file_exists returns False when info() raises FileNotFoundError.""" + storage = MSCObjectStorage(bucket="b", region="us-east-1") + storage._s3_client.info.side_effect = FileNotFoundError() + + assert storage.file_exists("my/key") is False + + def test_delete_file_returns_true_on_success(self, mock_msc): + """delete_file returns True when delete succeeds.""" + storage = MSCObjectStorage(bucket="b", region="us-east-1") + + assert storage.delete_file("my/key") is True + storage._s3_client.delete.assert_called_once() + + def test_delete_file_returns_false_when_file_not_found(self, mock_msc): + """delete_file returns False when delete raises FileNotFoundError.""" + storage = MSCObjectStorage(bucket="b", region="us-east-1") + storage._s3_client.delete.side_effect = FileNotFoundError() + + assert storage.delete_file("my/key") is False + + def test_url_safe_b64(self, mock_msc): + """_url_safe_b64 produces URL-safe base64 (no +, /, =).""" + _ = MSCObjectStorage( + bucket="b", region="us-east-1" + ) # need instance so mock_msc context is active + raw = b"hello" + result = MSCObjectStorage._url_safe_b64(raw) + # Standard b64 could have +, /, = + assert "+" not in result + assert "/" not in result + assert "=" not in result + # Decode and check round-trip (with URL-safe mapping) + decoded = base64.urlsafe_b64decode( + result.replace("-", "+").replace("_", "=").replace("~", "/") + ) + assert decoded == raw + + def test_generate_signed_url_raises_when_cloudfront_not_configured(self, mock_msc): + """generate_signed_url raises ObjectStorageError when CloudFront not configured.""" + storage = MSCObjectStorage( + bucket="b", + region="us-east-1", + cloudfront_domain=None, + cloudfront_key_pair_id=None, + cloudfront_private_key=None, + ) + + with pytest.raises(ObjectStorageError, match="CloudFront configuration"): + storage.generate_signed_url("key.txt") + + def test_generate_signed_url_returns_url_when_configured(self, mock_msc): + """generate_signed_url returns URL string when CloudFront is configured.""" + storage = MSCObjectStorage( + bucket="b", + region="us-east-1", + cloudfront_domain="d123.cloudfront.net", + cloudfront_key_pair_id="KP123", + cloudfront_private_key="-----BEGIN RSA PRIVATE KEY-----\nMIIEow==\n-----END RSA PRIVATE KEY-----", + ) + storage._rsa_signer = MagicMock(return_value=b"signature") + + url = storage.generate_signed_url("path/to/file", expires_in=3600) + + assert isinstance(url, str) + assert "d123.cloudfront.net" in url + assert "Policy=" in url + assert "Signature=" in url + assert "Key-Pair-Id=KP123" in url diff --git a/test/serve/server/test_server_main.py b/test/serve/server/test_server_main.py new file mode 100644 index 000000000..6c9894ff0 --- /dev/null +++ b/test/serve/server/test_server_main.py @@ -0,0 +1,2132 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import json +import os +from datetime import datetime, timezone +from typing import Any +from unittest.mock import AsyncMock, MagicMock, patch + +import pytest +from fastapi.testclient import TestClient +from pydantic import Field + +# Set API environment variable before importing main (DANGER!!! REMOVE THIS) +os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" + +# Patch FastAPI route creation to handle union return types +# This fixes the issue where FastAPI can't handle dict[str, Any] | StreamingResponse +# ruff: noqa: E402 +import fastapi # type: ignore[import-untyped] +import fastapi.routing # type: ignore[import-untyped] +from fastapi.exceptions import FastAPIError # type: ignore[import-untyped] + +_original_route_init = fastapi.routing.APIRoute.__init__ + + +def _patched_route_init(self, *args, **kwargs): + """Patched APIRoute.__init__ that handles union return types with StreamingResponse""" + import inspect + + from starlette.responses import StreamingResponse + + # Check if the endpoint has a union return type with StreamingResponse + endpoint = kwargs.get("endpoint") or (args[1] if len(args) > 1 else None) + if endpoint: + sig = inspect.signature(endpoint) + return_annotation = sig.return_annotation + if ( + hasattr(return_annotation, "__args__") + and StreamingResponse in return_annotation.__args__ + ): + # Set response_model=None to skip response model generation + kwargs["response_model"] = None + + try: + return _original_route_init(self, *args, **kwargs) + except FastAPIError as e: + if "Invalid args for response field" in str(e): + # Retry with response_model=None + kwargs["response_model"] = None + return _original_route_init(self, *args, **kwargs) + raise + + +# Apply the patch before any imports of earth2studio.serve.server.main +fastapi.routing.APIRoute.__init__ = _patched_route_init + + +class TestWorkflowSchemaEndpoint: + """Tests for GET /v1/workflows/{workflow_name}/schema endpoint""" + + @pytest.fixture + def mock_workflow_class(self): + """Create a mock workflow class with Parameters""" + from earth2studio.serve.server.workflow import Workflow, WorkflowParameters + + class TestWorkflowParameters(WorkflowParameters): + """Test parameters for unit testing""" + + forecast_times: list[str] = Field( + default=["2024-01-01T00:00:00"], + description="List of forecast initialization times", + ) + nsteps: int = Field( + default=10, + ge=1, + le=100, + description="Number of forecast steps", + ) + model_type: str = Field( + default="fcn", + description="Model type to use", + ) + + class TestWorkflow(Workflow): + name = "test_workflow" + description = "Test workflow for unit testing" + Parameters = TestWorkflowParameters + + @classmethod + def validate_parameters( + cls, parameters: dict[str, Any] | TestWorkflowParameters + ) -> TestWorkflowParameters: + return TestWorkflowParameters.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "success"} + + return TestWorkflow + + @pytest.fixture + def client(self, mock_workflow_class): + """Create test client with mocked dependencies""" + # Mock Redis and other dependencies at their source locations + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue"), + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + # Setup mock async Redis + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_instance.get = AsyncMock(return_value=None) + mock_async_redis.return_value = mock_async_instance + + # Setup mock sync Redis + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + + from earth2studio.serve.server.main import app + from earth2studio.serve.server.workflow import workflow_registry + + # Register the test workflow + workflow_registry._workflows["test_workflow"] = mock_workflow_class + + with TestClient(app, raise_server_exceptions=False) as client: + yield client + + # Cleanup + if "test_workflow" in workflow_registry._workflows: + del workflow_registry._workflows["test_workflow"] + + def test_schema_endpoint_returns_valid_json_schema( + self, client, mock_workflow_class + ): + """Test that schema endpoint returns valid JSON Schema""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + # Verify it's a valid JSON Schema structure + assert "type" in schema + assert schema["type"] == "object" + assert "properties" in schema + assert "title" in schema + + def test_schema_endpoint_includes_all_parameters(self, client, mock_workflow_class): + """Test that schema includes all defined parameters""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + properties = schema["properties"] + + # Check all parameters are present + assert "forecast_times" in properties + assert "nsteps" in properties + assert "model_type" in properties + + def test_schema_endpoint_includes_field_metadata(self, client, mock_workflow_class): + """Test that schema includes field descriptions and constraints""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + properties = schema["properties"] + + # Check forecast_times has correct type + assert properties["forecast_times"]["type"] == "array" + assert "description" in properties["forecast_times"] + + # Check nsteps has constraints + nsteps = properties["nsteps"] + assert nsteps["type"] == "integer" + assert "description" in nsteps + # Pydantic uses "minimum" and "maximum" for ge/le constraints + assert nsteps.get("minimum") == 1 or nsteps.get("exclusiveMinimum") == 0 + assert nsteps.get("maximum") == 100 or nsteps.get("exclusiveMaximum") == 101 + + def test_schema_endpoint_includes_defaults(self, client, mock_workflow_class): + """Test that schema includes default values""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + properties = schema["properties"] + + # Check defaults are included + assert properties["forecast_times"]["default"] == ["2024-01-01T00:00:00"] + assert properties["nsteps"]["default"] == 10 + assert properties["model_type"]["default"] == "fcn" + + def test_schema_endpoint_workflow_not_found(self, client): + """Test that 404 is returned for non-existent workflow""" + response = client.get("/v1/workflows/nonexistent_workflow/schema") + + assert response.status_code == 404 + error = response.json() + assert "not found" in error["detail"].lower() + + def test_schema_endpoint_openapi_compatibility(self, client, mock_workflow_class): + """Test that returned schema is OpenAPI 3.1 compatible (JSON Schema draft 2020-12)""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + # OpenAPI 3.1 / JSON Schema required fields + assert "type" in schema + assert "properties" in schema + + # Schema should be directly usable (no wrapper objects) + assert "workflow_name" not in schema + assert "parameters_schema" not in schema + + +class TestWorkflowParameterValidation: + """Test workflow parameter validation at submission time""" + + @pytest.fixture + def client(self): + """Create test client""" + from typing import Any, Literal + from unittest.mock import MagicMock, patch + + from pydantic import Field + + from earth2studio.serve.server.main import app + from earth2studio.serve.server.workflow import ( + Workflow, + WorkflowParameters, + workflow_registry, + ) + + # Create test workflow parameter classes with Literal validation + class TestDeterministicParams(WorkflowParameters): + forecast_times: list[str] = Field(default=["2024-01-01T00:00:00"]) + nsteps: int = Field(default=6, ge=1, le=100) + model_type: Literal["dlwp", "fcn"] = Field(default="fcn") + data_source: Literal["gfs"] = Field(default="gfs") + output_format: Literal["zarr"] = Field(default="zarr") + plot_variable: Literal["t2m", "msl", "u10m", "v10m", "tcwv", "z500"] = ( + Field(default="t2m") + ) + + class TestDiagnosticParams(WorkflowParameters): + forecast_times: list[str] = Field(default=["2024-01-01T00:00:00"]) + nsteps: int = Field(default=6, ge=1, le=100) + prognostic_model_type: Literal["dlwp", "fcn"] = Field(default="fcn") + diagnostic_model_type: Literal["precipitation_afno"] = Field( + default="precipitation_afno" + ) + data_source: Literal["gfs"] = Field(default="gfs") + plot_variable: Literal[ + "tp", "t2m", "msl", "u10m", "v10m", "tcwv", "z500" + ] = Field(default="tp") + + # Create mock workflow classes + class TestDeterministicWorkflow(Workflow): + name = "deterministic_workflow" + description = "Test deterministic workflow" + Parameters = TestDeterministicParams + + @classmethod + def validate_parameters( + cls, parameters: dict[str, Any] | TestDeterministicParams + ) -> TestDeterministicParams: + try: + return TestDeterministicParams.validate(parameters) + except Exception as e: + raise ValueError(f"Invalid parameters: {e}") from e + + def run(self, parameters, execution_id): + return {"status": "success"} + + class TestDiagnosticWorkflow(Workflow): + name = "diagnostic_workflow" + description = "Test diagnostic workflow" + Parameters = TestDiagnosticParams + + @classmethod + def validate_parameters( + cls, parameters: dict[str, Any] | TestDiagnosticParams + ) -> TestDiagnosticParams: + try: + return TestDiagnosticParams.validate(parameters) + except Exception as e: + raise ValueError(f"Invalid parameters: {e}") from e + + def run(self, parameters, execution_id): + return {"status": "success"} + + # Register test workflows directly in the registry + workflow_registry._workflows["deterministic_workflow"] = ( + TestDeterministicWorkflow + ) + workflow_registry._workflows["diagnostic_workflow"] = TestDiagnosticWorkflow + + # Create mocks + mock_redis = MagicMock() + mock_queue = MagicMock() + mock_queue.__len__ = MagicMock(return_value=0) + mock_queue.max_size = 100 + + with patch("earth2studio.serve.server.main.redis_sync_client", mock_redis): + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + test_client = TestClient(app) + yield test_client, mock_queue, mock_redis + + def test_valid_deterministic_workflow_parameters(self, client): + """Test that valid parameters for deterministic workflow are accepted""" + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_job" + mock_queue.enqueue = MagicMock(return_value=mock_job) + mock_redis.llen = MagicMock(return_value=0) + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "fcn", + "data_source": "gfs", + "output_format": "zarr", + "plot_variable": "t2m", + } + }, + ) + + assert response.status_code == 200 + data = response.json() + assert data["status"] == "queued" + + def test_invalid_model_type_rejected(self, client): + """Test that invalid model_type is rejected at submission""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "invalid_model", # Invalid value + "data_source": "gfs", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "model_type" in data["detail"] + + def test_invalid_data_source_rejected(self, client): + """Test that invalid data_source is rejected at submission""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "fcn", + "data_source": "invalid_source", # Invalid value + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "data_source" in data["detail"] + + def test_invalid_output_format_rejected(self, client): + """Test that invalid output_format is rejected at submission""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "fcn", + "data_source": "gfs", + "output_format": "invalid_format", # Invalid value + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "output_format" in data["detail"] + + def test_invalid_plot_variable_rejected(self, client): + """Test that invalid plot_variable is rejected at submission""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "fcn", + "data_source": "gfs", + "plot_variable": "invalid_variable", # Invalid value + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "plot_variable" in data["detail"] + + def test_invalid_nsteps_range_rejected(self, client): + """Test that nsteps outside valid range is rejected""" + test_client, _, _ = client + + # Test nsteps too low + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 0, # Below minimum of 1 + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + + # Test nsteps too high + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 101, # Above maximum of 100 + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + + def test_diagnostic_workflow_invalid_model_types_rejected(self, client): + """Test that invalid model types for diagnostic workflow are rejected""" + test_client, _, _ = client + + # Test invalid prognostic model + response = test_client.post( + "/v1/infer/diagnostic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "prognostic_model_type": "invalid_prognostic", # Invalid + "diagnostic_model_type": "precipitation_afno", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "prognostic_model_type" in data["detail"] + + # Test invalid diagnostic model + response = test_client.post( + "/v1/infer/diagnostic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "prognostic_model_type": "fcn", + "diagnostic_model_type": "invalid_diagnostic", # Invalid + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "diagnostic_model_type" in data["detail"] + + def test_valid_diagnostic_workflow_parameters(self, client): + """Test that valid parameters for diagnostic workflow are accepted""" + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_job" + mock_queue.enqueue = MagicMock(return_value=mock_job) + mock_redis.llen = MagicMock(return_value=0) + + response = test_client.post( + "/v1/infer/diagnostic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "prognostic_model_type": "fcn", + "diagnostic_model_type": "precipitation_afno", + "data_source": "gfs", + "plot_variable": "tp", + } + }, + ) + + assert response.status_code == 200 + data = response.json() + assert data["status"] == "queued" + + def test_multiple_invalid_parameters_rejected(self, client): + """Test that multiple invalid parameters are caught""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 101, # Invalid: too high + "model_type": "invalid_model", # Invalid value + "data_source": "invalid_source", # Invalid value + "output_format": "invalid_format", # Invalid value + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + + def test_valid_forecast_times_iso8601_accepted(self, client): + """Test that valid ISO 8601 forecast_times are accepted""" + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_job" + mock_queue.enqueue = MagicMock(return_value=mock_job) + mock_redis.llen = MagicMock(return_value=0) + + # Test various valid ISO 8601 formats + valid_times = [ + ["2024-01-01T00:00:00"], + ["2024-01-01T00:00:00Z"], + ["2024-01-01T00:00:00+00:00"], + ["2024-01-01T00:00:00.123456"], + ["2024-01-01 00:00:00"], # Space separator also accepted + ["2024-01-01T00:00:00", "2024-01-02T00:00:00", "2024-01-03T00:00:00"], + ] + + for times in valid_times: + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": times, + "nsteps": 10, + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 200, f"Failed for times: {times}" + data = response.json() + assert data["status"] == "queued" + + def test_invalid_forecast_times_rejected(self, client): + """Test that invalid forecast_times formats are rejected""" + test_client, _, _ = client + + # Test various invalid formats + invalid_times = [ + (["2024-01-01"], "date without time"), + (["01/01/2024"], "wrong date format"), + (["not-a-date"], "completely invalid"), + (["2024-13-01T00:00:00"], "invalid month"), + (["2024-01-32T00:00:00"], "invalid day"), + (["2024-01-01T25:00:00"], "invalid hour"), + ] + + for times, description in invalid_times: + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": times, + "nsteps": 10, + "model_type": "fcn", + } + }, + ) + + assert ( + response.status_code == 422 + ), f"Expected 422 for {description}, got {response.status_code}" + data = response.json() + assert ( + "Invalid parameters" in data["detail"] + ), f"Expected validation error for {description}" + assert ( + "forecast_times" in data["detail"] + ), f"Expected forecast_times in error for {description}" + + def test_forecast_times_mixed_valid_invalid_rejected(self, client): + """Test that forecast_times with one invalid value fails""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": [ + "2024-01-01T00:00:00", # Valid + "not-a-date", # Invalid + "2024-01-03T00:00:00", # Valid + ], + "nsteps": 10, + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "forecast_times" in data["detail"] + + def test_forecast_times_wrong_type_rejected(self, client): + """Test that forecast_times with non-string values are rejected""" + test_client, _, _ = client + + # Test with integer + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": [12345], # Not a string + "nsteps": 10, + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "forecast_times" in data["detail"] + + +class TestWorkflowExecutionRequest: + """Tests for WorkflowExecutionRequest validation""" + + def test_valid_request_with_parameters(self): + """Test that valid request with parameters field is accepted""" + from earth2studio.serve.server.main import WorkflowExecutionRequest + + # Valid request + request = WorkflowExecutionRequest( + parameters={"field1": "value1", "field2": 123} + ) + assert request.parameters == {"field1": "value1", "field2": 123} + + def test_valid_request_with_empty_parameters(self): + """Test that request with empty parameters dict is accepted""" + from earth2studio.serve.server.main import WorkflowExecutionRequest + + # Empty parameters is valid + request = WorkflowExecutionRequest(parameters={}) + assert request.parameters == {} + + def test_valid_request_without_parameters_uses_default(self): + """Test that request without parameters field uses default empty dict""" + from earth2studio.serve.server.main import WorkflowExecutionRequest + + # No parameters provided - should use default + request = WorkflowExecutionRequest() + assert request.parameters == {} + + def test_invalid_request_with_extra_fields(self): + """Test that request with unknown fields is rejected""" + from pydantic import ValidationError + + from earth2studio.serve.server.main import WorkflowExecutionRequest + + # Request with unknown field should be rejected + with pytest.raises(ValidationError, match="Extra inputs are not permitted"): + WorkflowExecutionRequest( + parameters={"valid": "param"}, unknown_field="should_fail" + ) + + def test_invalid_request_with_multiple_extra_fields(self): + """Test that request with multiple unknown fields is rejected""" + from pydantic import ValidationError + + from earth2studio.serve.server.main import WorkflowExecutionRequest + + # Multiple unknown fields + with pytest.raises(ValidationError, match="Extra inputs are not permitted"): + WorkflowExecutionRequest( + parameters={"valid": "param"}, + extra1="bad", + extra2="also_bad", + extra3="still_bad", + ) + + def test_invalid_request_flat_structure(self): + """Test that flat request structure (without parameters wrapper) is rejected""" + from pydantic import ValidationError + + from earth2studio.serve.server.main import WorkflowExecutionRequest + + # Flat structure - fields that should be inside 'parameters' + with pytest.raises(ValidationError, match="Extra inputs are not permitted"): + WorkflowExecutionRequest( + forecast_times=["2024-01-01"], + nsteps=6, + model_type="fcn", + ) + + def test_invalid_request_mixed_structure(self): + """Test that mixed structure (parameters + extra fields) is rejected""" + from pydantic import ValidationError + + from earth2studio.serve.server.main import WorkflowExecutionRequest + + # Mixed: valid parameters field + invalid extra fields + with pytest.raises(ValidationError, match="Extra inputs are not permitted"): + WorkflowExecutionRequest( + parameters={"forecast_times": ["2024-01-01"], "nsteps": 6}, + workflow_type="deterministic", # This should not be at this level + device="auto", # This should not be at this level + ) + + def test_parameters_field_type_validation(self): + """Test that parameters field must be a dict""" + from pydantic import ValidationError + + from earth2studio.serve.server.main import WorkflowExecutionRequest + + # parameters must be a dict, not a string + with pytest.raises(ValidationError): + WorkflowExecutionRequest(parameters="not_a_dict") + + # parameters must be a dict, not a list + with pytest.raises(ValidationError): + WorkflowExecutionRequest(parameters=["not", "a", "dict"]) + + # parameters must be a dict, not None + with pytest.raises(ValidationError): + WorkflowExecutionRequest(parameters=None) + + def test_valid_request_serialization(self): + """Test that valid request can be serialized to dict""" + from earth2studio.serve.server.main import WorkflowExecutionRequest + + request = WorkflowExecutionRequest( + parameters={"forecast_times": ["2024-01-01"], "nsteps": 10} + ) + + # Serialize to dict + data = request.model_dump() + assert isinstance(data, dict) + assert data == {"parameters": {"forecast_times": ["2024-01-01"], "nsteps": 10}} + + def test_valid_request_with_nested_parameters(self): + """Test that request with nested parameter structures is accepted""" + from earth2studio.serve.server.main import WorkflowExecutionRequest + + # Complex nested parameters + request = WorkflowExecutionRequest( + parameters={ + "forecast_times": ["2024-01-01", "2024-01-02"], + "nsteps": 10, + "config": { + "model": {"type": "fcn", "version": "1.0"}, + "data": {"source": "gfs", "cache": True}, + }, + "options": ["opt1", "opt2", "opt3"], + } + ) + + assert request.parameters["nsteps"] == 10 + assert request.parameters["config"]["model"]["type"] == "fcn" + assert len(request.parameters["options"]) == 3 + + +class TestQueuePosition: + """Tests for queue position functionality""" + + @pytest.fixture + def mock_queue(self): + """Create a mock RQ queue with job IDs""" + from unittest.mock import MagicMock + + queue = MagicMock() + queue.job_ids = [ + "workflow1_exec_001", + "workflow2_exec_002", + "workflow1_exec_003", + "workflow3_exec_004", + ] + return queue + + def test_get_queue_position_first_in_queue(self, mock_queue): + """Test getting position for first job in queue""" + from unittest.mock import patch + + from earth2studio.serve.server.main import get_queue_position + + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + position = get_queue_position("workflow1_exec_001") + assert position == 0 # 0-indexed: first job is at position 0 + + def test_get_queue_position_middle_of_queue(self, mock_queue): + """Test getting position for job in middle of queue""" + from unittest.mock import patch + + from earth2studio.serve.server.main import get_queue_position + + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + position = get_queue_position("workflow1_exec_003") + assert position == 2 # 0-indexed: third job is at position 2 + + def test_get_queue_position_last_in_queue(self, mock_queue): + """Test getting position for last job in queue""" + from unittest.mock import patch + + from earth2studio.serve.server.main import get_queue_position + + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + position = get_queue_position("workflow3_exec_004") + assert position == 3 # 0-indexed: fourth job is at position 3 + + def test_get_queue_position_not_in_queue(self, mock_queue): + """Test getting position for job not in queue returns None""" + from unittest.mock import patch + + from earth2studio.serve.server.main import get_queue_position + + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + position = get_queue_position("nonexistent_job") + assert position is None + + def test_get_queue_position_no_queue(self): + """Test getting position when queue is not initialized returns None""" + from unittest.mock import patch + + from earth2studio.serve.server.main import get_queue_position + + with patch("earth2studio.serve.server.main.inference_queue", None): + position = get_queue_position("any_job") + assert position is None + + def test_get_queue_position_empty_queue(self): + """Test getting position when queue is empty""" + from unittest.mock import MagicMock, patch + + from earth2studio.serve.server.main import get_queue_position + + empty_queue = MagicMock() + empty_queue.job_ids = [] + + with patch("earth2studio.serve.server.main.inference_queue", empty_queue): + position = get_queue_position("any_job") + assert position is None + + def test_get_queue_position_exception_handling(self): + """Test that exceptions in get_queue_position are handled gracefully""" + from unittest.mock import MagicMock, PropertyMock, patch + + from earth2studio.serve.server.main import get_queue_position + + queue_with_error = MagicMock() + type(queue_with_error).job_ids = PropertyMock( + side_effect=Exception("Queue connection error") + ) + + with patch("earth2studio.serve.server.main.inference_queue", queue_with_error): + position = get_queue_position("any_job") + assert position is None + + +class TestWorkflowExecutionWithQueuePosition: + """Tests for workflow execution endpoint with queue position""" + + @pytest.fixture + def mock_workflow_class(self): + """Create a mock workflow class""" + from earth2studio.serve.server.workflow import Workflow, WorkflowParameters + + class TestWorkflowParameters(WorkflowParameters): + """Test parameters""" + + test_param: str = "default" + + class TestWorkflow(Workflow): + name = "test_workflow" + description = "Test workflow" + Parameters = TestWorkflowParameters + + @classmethod + def validate_parameters(cls, parameters): + return TestWorkflowParameters.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "success"} + + return TestWorkflow + + @pytest.fixture + def client(self, mock_workflow_class): + """Create test client with mocked dependencies""" + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue") as mock_queue_class, + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + # Setup mock async Redis + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_instance.get = AsyncMock(return_value=None) + mock_async_redis.return_value = mock_async_instance + + # Setup mock sync Redis + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_instance.setex = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + + # Setup mock queue + mock_queue = MagicMock() + mock_queue.__len__ = MagicMock(return_value=0) + mock_queue.job_ids = [] + mock_queue_class.return_value = mock_queue + + from earth2studio.serve.server.main import app + from earth2studio.serve.server.workflow import workflow_registry + + # Register the test workflow + workflow_registry._workflows["test_workflow"] = mock_workflow_class + + with TestClient(app, raise_server_exceptions=False) as client: + yield client, mock_queue, mock_sync_instance + + # Cleanup + if "test_workflow" in workflow_registry._workflows: + del workflow_registry._workflows["test_workflow"] + + def test_execute_workflow_includes_queue_position(self, client): + """Test that POST /v1/infer/{workflow_name} includes queue position""" + from unittest.mock import patch + + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_workflow_exec_123" + + # Before enqueue: queue size is 0 + mock_queue.__len__ = MagicMock(return_value=0) + mock_queue.enqueue = MagicMock(return_value=mock_job) + + # Redis llen returns 0 (the queue size before the job is fully committed) + mock_redis.llen = MagicMock(return_value=0) + + # Patch the inference_queue at module level + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + response = test_client.post( + "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} + ) + + assert response.status_code == 200 + data = response.json() + + # Check that position is included in response + assert "position" in data + assert data["position"] == 0 # Redis llen returns 0 (first job, position 0) + assert data["status"] == "queued" + + def test_execute_workflow_position_with_existing_jobs(self, client): + """Test that position is correct when there are existing jobs in queue""" + from unittest.mock import patch + + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_workflow_exec_456" + + # Before enqueue: queue has 2 existing jobs + mock_queue.__len__ = MagicMock(return_value=2) + mock_queue.enqueue = MagicMock(return_value=mock_job) + + # Redis llen returns 2 (the queue size before the job is fully committed) + mock_redis.llen = MagicMock(return_value=2) + + # Patch the inference_queue at module level + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + response = test_client.post( + "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} + ) + + assert response.status_code == 200 + data = response.json() + + # Check that position is correct + assert "position" in data + assert data["position"] == 2 # Redis llen returns 2 (third job, position 2) + assert data["status"] == "queued" + + def test_execute_workflow_position_with_five_existing_jobs(self, client): + """Test that position is correct with multiple existing jobs in queue""" + from unittest.mock import patch + + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_workflow_exec_789" + mock_queue.enqueue = MagicMock(return_value=mock_job) + + # Before enqueue: queue has 5 existing jobs + mock_queue.__len__ = MagicMock(return_value=5) + + # Redis llen returns 5 (the queue size before the job is fully committed) + mock_redis.llen = MagicMock(return_value=5) + + # Patch the inference_queue at module level + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + response = test_client.post( + "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} + ) + + assert response.status_code == 200 + data = response.json() + + # Check that position is correct + assert "position" in data + assert data["position"] == 5 # Redis llen returns 5 (sixth job, position 5) + assert data["status"] == "queued" + + def test_get_workflow_status_includes_position_when_queued(self, client): + """Test that GET /v1/infer/{workflow_name}/{execution_id}/status includes position when status is queued""" + test_client, mock_queue, mock_redis = client + + # Setup queue with multiple jobs + execution_id = "exec_456" + job_id = f"test_workflow_{execution_id}" + + # Set up mock queue job_ids to include our job at position 1 + mock_queue.job_ids = ["other_job_1", job_id, "other_job_2"] + + # Mock Redis response for queued execution + import json + from datetime import datetime, timezone + from unittest.mock import patch + + execution_data = { + "workflow_name": "test_workflow", + "execution_id": execution_id, + "status": "queued", + "start_time": datetime.now(timezone.utc).isoformat(), + "metadata": {}, + } + mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) + + # Patch the inference_queue for get_queue_position to use + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") + + assert response.status_code == 200 + data = response.json() + + # Check that position is included and correct + assert "position" in data + assert data["position"] == 1 # Second in queue (0-indexed, so position 1) + assert data["status"] == "queued" + + def test_get_workflow_status_queued_but_not_in_queue(self, client): + """Test race condition: status is QUEUED but job not in queue (worker picked it up)""" + test_client, mock_queue, mock_redis = client + + execution_id = "exec_race" + + # Set up mock queue with empty job_ids (job already picked up by worker) + mock_queue.job_ids = [] + + # Mock Redis response with QUEUED status (worker hasn't updated it yet) + import json + from datetime import datetime, timezone + from unittest.mock import patch + + execution_data = { + "workflow_name": "test_workflow", + "execution_id": execution_id, + "status": "queued", # Still queued in Redis + "start_time": datetime.now(timezone.utc).isoformat(), + "metadata": {}, + } + mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) + + # Patch the inference_queue for get_queue_position to use + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") + + assert response.status_code == 200 + data = response.json() + + # Should be treated as RUNNING since job is not in queue + assert data["status"] == "running" + # Position should be None for running status + if "position" in data: + assert data["position"] is None + + def test_get_workflow_status_no_position_when_running(self, client): + """Test that position is None when workflow is running (not queued)""" + test_client, mock_queue, mock_redis = client + + execution_id = "exec_789" + + # Mock Redis response for running execution + import json + from datetime import datetime, timezone + + execution_data = { + "workflow_name": "test_workflow", + "execution_id": execution_id, + "status": "running", + "start_time": datetime.now(timezone.utc).isoformat(), + "metadata": {}, + } + mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) + + response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") + + assert response.status_code == 200 + data = response.json() + + # Position should be None or not included for non-queued status + # (The model allows None, so it could be None or absent) + if "position" in data: + assert data["position"] is None + assert data["status"] == "running" + + def test_get_workflow_status_no_position_when_completed(self, client): + """Test that position is None when workflow is completed""" + test_client, mock_queue, mock_redis = client + + execution_id = "exec_999" + + # Mock Redis response for completed execution + import json + from datetime import datetime, timezone + + execution_data = { + "workflow_name": "test_workflow", + "execution_id": execution_id, + "status": "completed", + "start_time": datetime.now(timezone.utc).isoformat(), + "end_time": datetime.now(timezone.utc).isoformat(), + "metadata": {}, + } + mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) + + response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") + + assert response.status_code == 200 + data = response.json() + + # Position should be None for completed workflows + if "position" in data: + assert data["position"] is None + assert data["status"] == "completed" + + +class TestHealthAndProbes: + """Tests for /health, /readiness, /liveness, and /metrics endpoints.""" + + @pytest.fixture + def client_with_mocks(self): + """Client with mocked Redis and RQ for probe endpoints.""" + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue"), + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_redis.return_value = mock_async_instance + + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + + from earth2studio.serve.server.main import app + + with TestClient(app, raise_server_exceptions=False) as c: + yield c + + def test_liveness_returns_alive(self, client_with_mocks): + """GET /liveness returns status alive.""" + response = client_with_mocks.get("/liveness") + assert response.status_code == 200 + assert response.json() == {"status": "alive"} + + def test_health_healthy_when_script_returns_zero(self, client_with_mocks): + """GET /health and /readiness return healthy when status script exits 0.""" + with patch( + "earth2studio.serve.server.main.asyncio.create_subprocess_exec" + ) as mock_exec: + mock_proc = MagicMock() + mock_proc.returncode = 0 + mock_proc.communicate = AsyncMock(return_value=(b"", b"")) + mock_exec.return_value = mock_proc + + for path in ("/health", "/readiness"): + response = client_with_mocks.get(path) + assert response.status_code == 200 + data = response.json() + assert data["status"] == "healthy" + assert "timestamp" in data + + def test_health_unhealthy_when_script_returns_nonzero(self, client_with_mocks): + """GET /health returns 503 when status script exits non-zero.""" + with patch( + "earth2studio.serve.server.main.asyncio.create_subprocess_exec" + ) as mock_exec: + mock_proc = MagicMock() + mock_proc.returncode = 1 + mock_proc.communicate = AsyncMock(return_value=(b"", b"stderr")) + mock_exec.return_value = mock_proc + + response = client_with_mocks.get("/health") + assert response.status_code == 503 + data = response.json() + assert data["detail"]["status"] == "unhealthy" + + def test_metrics_returns_prometheus_format(self, client_with_mocks): + """GET /metrics returns Prometheus text format.""" + with patch("earth2studio.serve.server.main.generate_latest") as mock_gen: + mock_gen.return_value = ( + b"# HELP mock_metric Mock\n# TYPE mock_metric gauge\nmock_metric 1.0\n" + ) + + response = client_with_mocks.get("/metrics") + assert response.status_code == 200 + assert "mock_metric" in response.text + assert "text/plain" in response.headers.get("content-type", "") + + +class TestListWorkflows: + """Tests for GET /v1/workflows and /v1/infer/workflows.""" + + @pytest.fixture + def client_with_workflows(self): + """Client with a registered workflow for list_workflows.""" + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue"), + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_redis.return_value = mock_async_instance + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + + from earth2studio.serve.server.main import app + from earth2studio.serve.server.workflow import workflow_registry + + class FakeWorkflow: + name = "fake_wf" + description = "Fake workflow for list test" + + workflow_registry._workflows["fake_wf"] = FakeWorkflow + + with TestClient(app, raise_server_exceptions=False) as c: + yield c + + if "fake_wf" in workflow_registry._workflows: + del workflow_registry._workflows["fake_wf"] + + def test_list_workflows_returns_registry(self, client_with_workflows): + """GET /v1/workflows returns workflows dict.""" + response = client_with_workflows.get("/v1/workflows") + assert response.status_code == 200 + data = response.json() + assert "workflows" in data + assert "fake_wf" in data["workflows"] + assert data["workflows"]["fake_wf"] == "Fake workflow for list test" + + def test_list_workflows_infer_path(self, client_with_workflows): + """GET /v1/infer/workflows returns same structure.""" + response = client_with_workflows.get("/v1/infer/workflows") + assert response.status_code == 200 + data = response.json() + assert "workflows" in data + + +class TestAdmissionControl: + """Tests for check_admission_control (queue full, Redis None).""" + + @pytest.fixture + def client_for_admission(self): + """Client with mocked queue and redis for admission tests.""" + from earth2studio.serve.server.workflow import Workflow, WorkflowParameters + + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue") as mock_queue_class, + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_redis.return_value = mock_async_instance + + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.llen = MagicMock(return_value=0) + mock_sync_redis.return_value = mock_sync_instance + + mock_queue = MagicMock() + mock_queue.enqueue = MagicMock(return_value=MagicMock(id="job_1")) + mock_queue_class.return_value = mock_queue + + class AdmitParams(WorkflowParameters): + x: int = Field(default=1, ge=0) + + class AdmitWorkflow(Workflow): + name = "admit_wf" + description = "For admission test" + Parameters = AdmitParams + + @classmethod + def validate_parameters( + cls, parameters: dict[str, Any] | AdmitParams + ) -> AdmitParams: + return AdmitParams.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "ok"} + + from earth2studio.serve.server.main import app + from earth2studio.serve.server.workflow import workflow_registry + + workflow_registry._workflows["admit_wf"] = AdmitWorkflow + + with TestClient(app, raise_server_exceptions=False) as c: + yield c, mock_sync_instance, mock_queue + + if "admit_wf" in workflow_registry._workflows: + del workflow_registry._workflows["admit_wf"] + + def test_admission_control_redis_none_returns_503(self, client_for_admission): + """When redis_sync_client is None, execute returns 503.""" + client, mock_sync_redis, mock_queue = client_for_admission + with patch("earth2studio.serve.server.main.redis_sync_client", None): + response = client.post( + "/v1/infer/admit_wf", + json={"parameters": {}}, + ) + assert response.status_code == 503 + assert "Redis" in response.json().get("detail", "") + + def test_admission_control_queue_full_returns_429(self, client_for_admission): + """When queue is full, execute returns 429.""" + client, mock_sync_redis, mock_queue = client_for_admission + mock_sync_redis.llen.return_value = 100 + with patch("earth2studio.serve.server.main.config") as mock_config: + mock_config.queue.max_size = 10 + mock_config.queue.name = "inference" + mock_config.queue.result_zip_queue_name = "result_zip" + mock_config.queue.object_storage_queue_name = "object_storage" + mock_config.queue.finalize_metadata_queue_name = "finalize_metadata" + response = client.post( + "/v1/infer/admit_wf", + json={"parameters": {}}, + ) + assert response.status_code == 429 + assert "full" in response.json().get("detail", "").lower() + + def test_admission_control_llen_raises_returns_500(self, client_for_admission): + """When redis_sync_client.llen raises, execute returns 500.""" + client, mock_sync_redis, mock_queue = client_for_admission + mock_sync_redis.llen.side_effect = RuntimeError("Redis connection lost") + response = client.post( + "/v1/infer/admit_wf", + json={"parameters": {}}, + ) + assert response.status_code == 500 + assert "queue" in response.json().get("detail", "").lower() + + +class TestExecuteWorkflowBranches: + """Tests for execute_workflow branches (404, 400, 503, 500).""" + + @pytest.fixture + def client_exec(self): + """Client with one workflow for execute tests.""" + from earth2studio.serve.server.workflow import Workflow, WorkflowParameters + + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue") as mock_queue_class, + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_instance.get = AsyncMock(return_value=None) + mock_async_redis.return_value = mock_async_instance + + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_instance.setex = MagicMock() + mock_sync_instance.llen = MagicMock(return_value=0) + mock_sync_redis.return_value = mock_sync_instance + + mock_queue = MagicMock() + mock_job = MagicMock() + mock_job.id = "exec_wf_exec_123" + mock_queue.enqueue = MagicMock(return_value=mock_job) + mock_queue_class.return_value = mock_queue + + class ExecParams(WorkflowParameters): + x: int = Field(default=1, ge=0) + + class ExecWorkflow(Workflow): + name = "exec_wf" + description = "For execute tests" + Parameters = ExecParams + + @classmethod + def validate_parameters( + cls, parameters: dict[str, Any] | ExecParams + ) -> ExecParams: + return ExecParams.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "ok"} + + from earth2studio.serve.server.main import app + from earth2studio.serve.server.workflow import workflow_registry + + workflow_registry._workflows["exec_wf"] = ExecWorkflow + with TestClient(app, raise_server_exceptions=False) as c: + yield c, mock_sync_instance, mock_queue + if "exec_wf" in workflow_registry._workflows: + del workflow_registry._workflows["exec_wf"] + + def test_execute_workflow_not_found_404(self, client_exec): + """POST /v1/infer/{workflow_name} with unknown workflow returns 404.""" + client, _, _ = client_exec + response = client.post( + "/v1/infer/nonexistent_workflow", + json={"parameters": {}}, + ) + assert response.status_code == 404 + assert "not found" in response.json().get("detail", "").lower() + + def test_execute_workflow_validate_parameters_unexpected_error_400( + self, client_exec + ): + """When validate_parameters raises non-ValueError, returns 400.""" + client, _, _ = client_exec + with patch("earth2studio.serve.server.main.workflow_registry") as mock_registry: + mock_wf = MagicMock() + mock_wf.validate_parameters.side_effect = AttributeError("no model_dump") + mock_registry.get_workflow_class.return_value = mock_wf + response = client.post( + "/v1/infer/exec_wf", + json={"parameters": {"x": 1}}, + ) + assert response.status_code == 400 + assert "validating" in response.json().get("detail", "").lower() + + def test_execute_workflow_inference_queue_none_503(self, client_exec): + """When inference_queue is None, returns 503.""" + client, mock_redis, mock_queue = client_exec + with patch("earth2studio.serve.server.main.inference_queue", None): + response = client.post( + "/v1/infer/exec_wf", + json={"parameters": {}}, + ) + assert response.status_code == 503 + assert "queue" in response.json().get("detail", "").lower() + + def test_execute_workflow_llen_raises_after_enqueue_500(self, client_exec): + """When llen raises after enqueue (queue position lookup), returns 500.""" + client, mock_redis, mock_queue = client_exec + # First 4 calls: admission (4 queues); 5th: position lookup. Make 5th raise. + mock_redis.llen.side_effect = [0, 0, 0, 0, RuntimeError("redis error")] + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + response = client.post( + "/v1/infer/exec_wf", + json={"parameters": {}}, + ) + assert response.status_code == 500 + assert "queue position" in response.json().get( + "detail", "" + ).lower() or "Internal" in response.json().get("detail", "") + + def test_execute_workflow_enqueue_failure_500(self, client_exec): + """When enqueue raises, returns 500.""" + client, mock_redis, mock_queue = client_exec + mock_queue.enqueue.side_effect = RuntimeError("RQ enqueue failed") + with patch("earth2studio.serve.server.main.inference_queue", mock_queue): + response = client.post( + "/v1/infer/exec_wf", + json={"parameters": {}}, + ) + assert response.status_code == 500 + assert "enqueue" in response.json().get("detail", "").lower() + + +class TestHealthMetricsSchemaExceptions: + """Tests for health, metrics, and schema exception paths.""" + + @pytest.fixture + def client_probes(self): + """Client for probe endpoints.""" + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue"), + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_redis.return_value = mock_async_instance + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + from earth2studio.serve.server.main import app + + with TestClient(app, raise_server_exceptions=False) as c: + yield c + + def test_health_check_subprocess_exception_500(self, client_probes): + """When create_subprocess_exec raises, health returns 500.""" + with patch( + "earth2studio.serve.server.main.asyncio.create_subprocess_exec" + ) as mock_exec: + mock_exec.side_effect = FileNotFoundError("status.sh not found") + response = client_probes.get("/health") + assert response.status_code == 500 + assert "Health check failed" in response.json().get("detail", "") + + def test_metrics_generate_latest_raises_500(self, client_probes): + """When generate_latest raises, metrics returns 500.""" + with patch("earth2studio.serve.server.main.generate_latest") as mock_gen: + mock_gen.side_effect = RuntimeError("metrics error") + response = client_probes.get("/metrics") + assert response.status_code == 500 + detail = response.json().get("detail", {}) + if isinstance(detail, dict): + assert "metrics" in str(detail).lower() + else: + assert "metrics" in detail.lower() + + def test_schema_generation_exception_500(self, client_probes): + """When model_json_schema raises, schema endpoint returns 500.""" + from earth2studio.serve.server.workflow import Workflow, WorkflowParameters + + class BadSchemaParams(WorkflowParameters): + x: int = Field(default=1) + + class BadSchemaWorkflow(Workflow): + name = "bad_schema_wf" + description = "Bad schema" + Parameters = BadSchemaParams + + @classmethod + def validate_parameters(cls, parameters): + return BadSchemaParams.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "ok"} + + from earth2studio.serve.server.workflow import workflow_registry + + workflow_registry._workflows["bad_schema_wf"] = BadSchemaWorkflow + try: + with patch.object( + BadSchemaParams, + "model_json_schema", + side_effect=RuntimeError("schema error"), + ): + response = client_probes.get("/v1/workflows/bad_schema_wf/schema") + assert response.status_code == 500 + detail = response.json().get("detail", {}) + assert "schema" in str(detail).lower() + finally: + if "bad_schema_wf" in workflow_registry._workflows: + del workflow_registry._workflows["bad_schema_wf"] + + +class TestGetWorkflowStatusBranches: + """Tests for get_workflow_status branches (404 ValueError, 500 Exception).""" + + @pytest.fixture + def client_status(self): + """Client with workflow for status tests.""" + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue") as mock_queue_class, + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_instance.get = AsyncMock(return_value=None) + mock_async_redis.return_value = mock_async_instance + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + mock_queue_class.return_value = MagicMock() + + from earth2studio.serve.server.main import app + from earth2studio.serve.server.workflow import ( + Workflow, + WorkflowParameters, + workflow_registry, + ) + + class StatusParams(WorkflowParameters): + x: int = Field(default=1) + + class StatusWorkflow(Workflow): + name = "status_wf" + description = "Status test" + Parameters = StatusParams + + @classmethod + def validate_parameters(cls, parameters): + return StatusParams.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "ok"} + + workflow_registry._workflows["status_wf"] = StatusWorkflow + with TestClient(app, raise_server_exceptions=False) as c: + yield c, mock_sync_instance + if "status_wf" in workflow_registry._workflows: + del workflow_registry._workflows["status_wf"] + + def test_get_workflow_status_value_error_404(self, client_status): + """When _get_execution_data raises ValueError, returns 404.""" + client, mock_redis = client_status + with patch("earth2studio.serve.server.main.workflow_registry") as mock_registry: + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock( + side_effect=ValueError("Execution not found") + ) + mock_registry.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/status_wf/exec_123/status") + assert response.status_code == 404 + + def test_get_workflow_status_exception_500(self, client_status): + """When _get_execution_data raises Exception, returns 500.""" + client, mock_redis = client_status + with patch("earth2studio.serve.server.main.workflow_registry") as mock_registry: + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock( + side_effect=RuntimeError("Redis error") + ) + mock_registry.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/status_wf/exec_123/status") + assert response.status_code == 500 + assert "status" in response.json().get("detail", "").lower() + + +class TestGetWorkflowResultsBranches: + """Tests for get_workflow_results (EXPIRED, 202, FAILED, CANCELLED, 404, 200, 500).""" + + @pytest.fixture + def client_results(self, tmp_path): + """Client and tmp dir for results tests.""" + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue") as mock_queue_class, + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_instance.get = AsyncMock(return_value=None) + mock_async_redis.return_value = mock_async_instance + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + mock_queue_class.return_value = MagicMock() + + from earth2studio.serve.server.main import app + from earth2studio.serve.server.workflow import ( + Workflow, + WorkflowParameters, + WorkflowStatus, + workflow_registry, + ) + + class ResultsParams(WorkflowParameters): + x: int = Field(default=1) + + class ResultsWorkflow(Workflow): + name = "results_wf" + description = "Results test" + Parameters = ResultsParams + + @classmethod + def validate_parameters(cls, parameters): + return ResultsParams.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "ok"} + + workflow_registry._workflows["results_wf"] = ResultsWorkflow + with TestClient(app, raise_server_exceptions=False) as c: + yield c, mock_sync_instance, tmp_path, WorkflowStatus + if "results_wf" in workflow_registry._workflows: + del workflow_registry._workflows["results_wf"] + + def _make_execution_data(self, status, execution_id="exec_1"): + from earth2studio.serve.server.workflow import WorkflowResult + + return WorkflowResult( + workflow_name="results_wf", + execution_id=execution_id, + status=status, + start_time=datetime.now(timezone.utc).isoformat(), + end_time=( + datetime.now(timezone.utc).isoformat() + if status in ("completed", "failed", "expired", "cancelled") + else None + ), + error_message="failed" if status == "failed" else None, + ) + + def test_get_workflow_results_expired_400(self, client_results): + """When status is EXPIRED, returns 400.""" + client, mock_redis, _, WorkflowStatus = client_results + exec_data = self._make_execution_data(WorkflowStatus.EXPIRED) + mock_redis.get.return_value = json.dumps(exec_data.model_dump()).encode() + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/results_wf/exec_1/results") + assert response.status_code == 400 + assert "expired" in response.json().get("detail", {}).get("error", "").lower() + + def test_get_workflow_results_still_running_202(self, client_results): + """When status is RUNNING, returns 202.""" + client, mock_redis, _, WorkflowStatus = client_results + exec_data = self._make_execution_data(WorkflowStatus.RUNNING) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/results_wf/exec_1/results") + assert response.status_code == 202 + + def test_get_workflow_results_failed_404(self, client_results): + """When status is FAILED, returns 404.""" + client, mock_redis, _, WorkflowStatus = client_results + exec_data = self._make_execution_data(WorkflowStatus.FAILED) + exec_data.error_message = "Something failed" + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/results_wf/exec_1/results") + assert response.status_code == 404 + assert "failed" in response.json().get("detail", {}).get("error", "").lower() + + def test_get_workflow_results_cancelled_404(self, client_results): + """When status is CANCELLED, returns 404.""" + client, mock_redis, _, WorkflowStatus = client_results + exec_data = self._make_execution_data(WorkflowStatus.CANCELLED) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/results_wf/exec_1/results") + assert response.status_code == 404 + assert "cancelled" in response.json().get("detail", {}).get("error", "").lower() + + def test_get_workflow_results_metadata_not_found_404(self, client_results): + """When status is COMPLETED but metadata file missing, returns 404.""" + client, mock_redis, tmp_path, WorkflowStatus = client_results + exec_data = self._make_execution_data(WorkflowStatus.COMPLETED) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.RESULTS_ZIP_DIR", tmp_path): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/results_wf/exec_1/results") + assert response.status_code == 404 + assert "Metadata" in response.json().get("detail", {}).get("error", "") + + def test_get_workflow_results_success_200(self, client_results): + """When status is COMPLETED and metadata exists, returns 200 with JSON.""" + client, mock_redis, tmp_path, WorkflowStatus = client_results + exec_data = self._make_execution_data(WorkflowStatus.COMPLETED) + metadata_path = tmp_path / "metadata_results_wf:exec_1.json" + metadata_path.write_text( + json.dumps({"request_id": "results_wf:exec_1", "status": "completed"}) + ) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.RESULTS_ZIP_DIR", tmp_path): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/results_wf/exec_1/results") + assert response.status_code == 200 + assert response.json().get("request_id") == "results_wf:exec_1" + + def test_get_workflow_results_value_error_400(self, client_results): + """When _get_execution_data raises ValueError, returns 400.""" + client, _, _, _ = client_results + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock( + side_effect=ValueError("Invalid key") + ) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/results_wf/exec_1/results") + assert response.status_code == 400 + + def test_get_workflow_results_exception_500(self, client_results): + """When reading metadata raises, returns 500.""" + client, mock_redis, tmp_path, WorkflowStatus = client_results + exec_data = self._make_execution_data(WorkflowStatus.COMPLETED) + metadata_path = tmp_path / "metadata_results_wf:exec_1.json" + metadata_path.write_text("not valid json {{") + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.RESULTS_ZIP_DIR", tmp_path): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/results_wf/exec_1/results") + assert response.status_code == 500 + + +class TestGetWorkflowResultFileBranches: + """Tests for get_workflow_result_file (404, 503, 403, 400, 200).""" + + @pytest.fixture + def client_file(self, tmp_path): + """Client and tmp dir for result file tests.""" + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue") as mock_queue_class, + patch("earth2studio.serve.server.workflow.register_all_workflows"), + ): + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_instance.get = AsyncMock(return_value=None) + mock_async_redis.return_value = mock_async_instance + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + mock_queue_class.return_value = MagicMock() + + from earth2studio.serve.server.main import app + from earth2studio.serve.server.workflow import ( + Workflow, + WorkflowParameters, + WorkflowStatus, + workflow_registry, + ) + + class FileParams(WorkflowParameters): + x: int = Field(default=1) + + class FileWorkflow(Workflow): + name = "file_wf" + description = "File test" + Parameters = FileParams + + @classmethod + def validate_parameters(cls, parameters): + return FileParams.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "ok"} + + workflow_registry._workflows["file_wf"] = FileWorkflow + with TestClient(app, raise_server_exceptions=False) as c: + yield c, mock_async_instance, mock_sync_instance, tmp_path, WorkflowStatus + if "file_wf" in workflow_registry._workflows: + del workflow_registry._workflows["file_wf"] + + def _exec_data(self, status=None): + from earth2studio.serve.server.workflow import ( + WorkflowResult, + WorkflowStatus, + ) + + if status is None: + status = WorkflowStatus.COMPLETED + return WorkflowResult( + workflow_name="file_wf", + execution_id="exec_1", + status=status, + start_time=datetime.now(timezone.utc).isoformat(), + end_time=datetime.now(timezone.utc).isoformat(), + ) + + def test_get_workflow_result_file_workflow_not_found_404(self, client_file): + """When workflow not in registry, returns 404.""" + client, *_ = client_file + response = client.get("/v1/infer/nonexistent_wf/exec_1/results/out.nc") + assert response.status_code == 404 + + def test_get_workflow_result_file_status_not_completed_404(self, client_file): + """When status is not COMPLETED, returns 404.""" + client, mock_async, mock_sync, _, WorkflowStatus = client_file + exec_data = self._exec_data(WorkflowStatus.RUNNING) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/file_wf/exec_1/results/out.nc") + assert response.status_code == 404 + assert ( + "not available" + in response.json().get("detail", {}).get("error", "").lower() + ) + + def test_get_workflow_result_file_redis_none_503(self, client_file): + """When redis_client (async) is None for file request, returns 503.""" + client, mock_async, mock_sync, _, WorkflowStatus = client_file + exec_data = self._exec_data() + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.redis_client", None): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/file_wf/exec_1/results/out.nc") + assert response.status_code == 503 + + def test_get_workflow_result_file_zip_not_in_redis_404(self, client_file): + """When filepath equals request_id but zip not in Redis, returns 404.""" + client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file + exec_data = self._exec_data() + mock_async.get = AsyncMock(return_value=None) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.redis_client", mock_async): + with patch("earth2studio.serve.server.main.RESULTS_ZIP_DIR", tmp_path): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get( + "/v1/infer/file_wf/exec_1/results/file_wf:exec_1" + ) + assert response.status_code == 404 + assert "Zip" in response.json().get("detail", {}).get("error", "") + + def test_get_workflow_result_file_output_dir_not_found_404(self, client_file): + """When output_path_key not in Redis, returns 404.""" + client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file + exec_data = self._exec_data() + mock_async.get = AsyncMock(return_value=None) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.redis_client", mock_async): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/file_wf/exec_1/results/somefile.txt") + assert response.status_code == 404 + assert "Output directory" in response.json().get("detail", {}).get("error", "") + + def test_get_workflow_result_file_path_traversal_403(self, client_file): + """When filepath escapes output dir, returns 403 (or 404 if path invalid).""" + client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file + exec_data = self._exec_data() + output_dir = tmp_path / "output" + output_dir.mkdir() + # Create a file inside output_dir; request it via path that escapes (..) + inner = output_dir / "inner.txt" + inner.write_text("data") + mock_async.get = AsyncMock(return_value=str(output_dir)) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.redis_client", mock_async): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + # Path ../output/inner.txt from output_dir resolves to output_dir/inner.txt + # Use path that clearly escapes: .. with resolved path outside + response = client.get( + "/v1/infer/file_wf/exec_1/results/..%2F..%2F..%2Fetc%2Fpasswd" + ) + # Path traversal must not succeed: either 403 (access denied) or 404 + assert response.status_code in (403, 404) + if response.status_code == 403: + assert "Access denied" in response.json().get("detail", {}).get("error", "") + + def test_get_workflow_result_file_not_found_404(self, client_file): + """When file does not exist in output dir, returns 404.""" + client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file + exec_data = self._exec_data() + output_dir = tmp_path / "output" + output_dir.mkdir() + mock_async.get = AsyncMock(return_value=str(output_dir)) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.redis_client", mock_async): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get( + "/v1/infer/file_wf/exec_1/results/nonexistent.txt" + ) + assert response.status_code == 404 + assert "File not found" in response.json().get("detail", {}).get("error", "") + + def test_get_workflow_result_file_not_a_file_400(self, client_file): + """When path is a directory, returns 400.""" + client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file + exec_data = self._exec_data() + output_dir = tmp_path / "output" + output_dir.mkdir() + subdir = output_dir / "subdir" + subdir.mkdir() + mock_async.get = AsyncMock(return_value=str(output_dir)) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.redis_client", mock_async): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/file_wf/exec_1/results/subdir") + assert response.status_code == 400 + assert "Not a file" in response.json().get("detail", {}).get("error", "") + + def test_get_workflow_result_file_stream_file_200(self, client_file): + """When file exists, returns 200 with streamed content.""" + client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file + exec_data = self._exec_data() + output_dir = tmp_path / "output" + output_dir.mkdir() + out_file = output_dir / "data.txt" + out_file.write_text("hello world") + mock_async.get = AsyncMock(return_value=str(output_dir)) + with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: + with patch("earth2studio.serve.server.main.redis_client", mock_async): + mock_wf = MagicMock() + mock_wf._get_execution_data = MagicMock(return_value=exec_data) + mock_reg.get_workflow_class.return_value = mock_wf + response = client.get("/v1/infer/file_wf/exec_1/results/data.txt") + assert response.status_code == 200 + assert response.text == "hello world" + + +class TestMainEntrypoint: + """Test main module entrypoint (covers line 1044).""" + + def test_main_entrypoint_calls_uvicorn(self): + """When run as __main__, uvicorn.run is called.""" + import runpy + + import earth2studio.serve.server.main as main_module + + with patch("uvicorn.run") as mock_run: + runpy.run_path(main_module.__file__, run_name="__main__") + mock_run.assert_called_once() + call = mock_run.call_args + # runpy re-executes the module so app is a new instance; check type and args + assert call[0][0].__class__.__name__ == "FastAPI" + assert call[1]["host"] == main_module.config.server.host + assert call[1]["port"] == main_module.config.server.port diff --git a/test/serve/server/test_utils.py b/test/serve/server/test_utils.py new file mode 100644 index 000000000..3e3b663ff --- /dev/null +++ b/test/serve/server/test_utils.py @@ -0,0 +1,266 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from unittest.mock import MagicMock, patch + +from earth2studio.serve.server.utils import ( + get_inference_request_metadata_key, + get_inference_request_output_path_key, + get_inference_request_zip_key, + get_results_zip_dir_key, + get_signed_url_key, + queue_next_stage, +) + + +class TestRedisKeyFunctions: + """Tests for Redis key helper functions.""" + + def test_get_inference_request_zip_key(self): + """get_inference_request_zip_key returns expected key format.""" + assert get_inference_request_zip_key("req_1") == ( + "inference_request_zips:req_1:zip_file" + ) + + def test_get_inference_request_output_path_key(self): + """get_inference_request_output_path_key returns expected key format.""" + assert get_inference_request_output_path_key("req_1") == ( + "inference_request:req_1:output_path" + ) + + def test_get_inference_request_metadata_key(self): + """get_inference_request_metadata_key returns expected key format.""" + assert get_inference_request_metadata_key("req_1") == ( + "inference_request:req_1:pending_metadata" + ) + + def test_get_results_zip_dir_key(self): + """get_results_zip_dir_key returns expected key format.""" + assert get_results_zip_dir_key("req_1") == ( + "inference_request:req_1:results_zip_dir" + ) + + def test_get_signed_url_key(self): + """get_signed_url_key returns expected key format.""" + assert get_signed_url_key("req_1") == ("inference_request:req_1:signed_url") + + +class TestQueueNextStage: + """Tests for queue_next_stage.""" + + def test_unknown_stage_returns_none(self): + """Unknown current_stage logs error and returns None.""" + mock_redis = MagicMock() + result = queue_next_stage( + redis_client=mock_redis, + current_stage="unknown_stage", # type: ignore[arg-type] + workflow_name="wf", + execution_id="exec_1", + output_path_str="/path", + ) + assert result is None + + def test_inference_stage_queues_result_zip(self): + """current_stage=inference enqueues process_result_zip to result_zip queue.""" + mock_redis = MagicMock() + mock_config = MagicMock() + mock_config.paths.result_zip_enabled = True + mock_config.object_storage.enabled = False + mock_config.queue.result_zip_queue_name = "result_zip" + mock_config.queue.default_timeout = "1h" + mock_config.queue.job_timeout = "2h" + mock_job = MagicMock() + mock_job.id = "job_123" + mock_queue = MagicMock() + mock_queue.enqueue.return_value = mock_job + + with ( + patch( + "earth2studio.serve.server.utils.get_config", return_value=mock_config + ), + patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), + ): + result = queue_next_stage( + redis_client=mock_redis, + current_stage="inference", + workflow_name="wf", + execution_id="exec_1", + output_path_str="/out", + results_zip_dir_str="/zip", + ) + + assert result == "job_123" + mock_queue.enqueue.assert_called_once() + call_kw = mock_queue.enqueue.call_args + assert ( + call_kw[0][0] == "earth2studio.serve.server.cpu_worker.process_result_zip" + ) + assert call_kw[0][1:5] == ("wf", "exec_1", "/out", "/zip") + assert call_kw[0][5] is True # create_zip + + def test_inference_stage_create_zip_false_when_object_storage_enabled(self): + """When object_storage enabled, create_zip is False for inference stage.""" + mock_redis = MagicMock() + mock_config = MagicMock() + mock_config.paths.result_zip_enabled = True + mock_config.object_storage.enabled = True + mock_config.queue.result_zip_queue_name = "result_zip" + mock_config.queue.default_timeout = "1h" + mock_config.queue.job_timeout = "2h" + mock_job = MagicMock() + mock_job.id = "job_123" + mock_queue = MagicMock() + mock_queue.enqueue.return_value = mock_job + + with ( + patch( + "earth2studio.serve.server.utils.get_config", return_value=mock_config + ), + patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), + ): + queue_next_stage( + redis_client=mock_redis, + current_stage="inference", + workflow_name="wf", + execution_id="exec_1", + output_path_str="/out", + results_zip_dir_str="/zip", + ) + + assert mock_queue.enqueue.call_args[0][5] is False # create_zip + + def test_result_zip_stage_object_storage_enabled_queues_object_storage(self): + """current_stage=result_zip with object_storage enabled enqueues process_object_storage_upload.""" + mock_redis = MagicMock() + mock_config = MagicMock() + mock_config.object_storage.enabled = True + mock_config.queue.object_storage_queue_name = "object_storage" + mock_config.queue.default_timeout = "1h" + mock_config.queue.job_timeout = "2h" + mock_job = MagicMock() + mock_job.id = "job_456" + mock_queue = MagicMock() + mock_queue.enqueue.return_value = mock_job + + with ( + patch( + "earth2studio.serve.server.utils.get_config", return_value=mock_config + ), + patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), + ): + result = queue_next_stage( + redis_client=mock_redis, + current_stage="result_zip", + workflow_name="wf", + execution_id="exec_1", + output_path_str="/out", + ) + + assert result == "job_456" + mock_queue.enqueue.assert_called_once() + assert "process_object_storage_upload" in mock_queue.enqueue.call_args[0][0] + assert mock_queue.enqueue.call_args[0][1:4] == ("wf", "exec_1", "/out") + + def test_result_zip_stage_object_storage_disabled_queues_finalize_metadata(self): + """current_stage=result_zip with object_storage disabled enqueues process_finalize_metadata.""" + mock_redis = MagicMock() + mock_config = MagicMock() + mock_config.object_storage.enabled = False + mock_config.queue.finalize_metadata_queue_name = "finalize_metadata" + mock_config.queue.default_timeout = "1h" + mock_config.queue.job_timeout = "2h" + mock_job = MagicMock() + mock_job.id = "job_789" + mock_queue = MagicMock() + mock_queue.enqueue.return_value = mock_job + + with ( + patch( + "earth2studio.serve.server.utils.get_config", return_value=mock_config + ), + patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), + ): + result = queue_next_stage( + redis_client=mock_redis, + current_stage="result_zip", + workflow_name="wf", + execution_id="exec_1", + output_path_str="/out", + ) + + assert result == "job_789" + mock_queue.enqueue.assert_called_once() + assert "process_finalize_metadata" in mock_queue.enqueue.call_args[0][0] + assert mock_queue.enqueue.call_args[0][1:3] == ("wf", "exec_1") + + def test_object_storage_stage_queues_finalize_metadata(self): + """current_stage=object_storage enqueues process_finalize_metadata.""" + mock_redis = MagicMock() + mock_config = MagicMock() + mock_config.queue.finalize_metadata_queue_name = "finalize_metadata" + mock_config.queue.default_timeout = "1h" + mock_config.queue.job_timeout = "2h" + mock_job = MagicMock() + mock_job.id = "job_final" + mock_queue = MagicMock() + mock_queue.enqueue.return_value = mock_job + + with ( + patch( + "earth2studio.serve.server.utils.get_config", return_value=mock_config + ), + patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), + ): + result = queue_next_stage( + redis_client=mock_redis, + current_stage="object_storage", + workflow_name="wf", + execution_id="exec_1", + output_path_str="/out", + ) + + assert result == "job_final" + mock_queue.enqueue.assert_called_once() + assert "process_finalize_metadata" in mock_queue.enqueue.call_args[0][0] + + def test_enqueue_exception_returns_none(self): + """When Queue.enqueue raises, queue_next_stage returns None.""" + mock_redis = MagicMock() + mock_config = MagicMock() + mock_config.paths.result_zip_enabled = False + mock_config.object_storage.enabled = False + mock_config.queue.result_zip_queue_name = "result_zip" + mock_config.queue.default_timeout = "1h" + mock_config.queue.job_timeout = "2h" + mock_queue = MagicMock() + mock_queue.enqueue.side_effect = Exception("RQ error") + + with ( + patch( + "earth2studio.serve.server.utils.get_config", return_value=mock_config + ), + patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), + ): + result = queue_next_stage( + redis_client=mock_redis, + current_stage="inference", + workflow_name="wf", + execution_id="exec_1", + output_path_str="/out", + results_zip_dir_str="/zip", + ) + + assert result is None diff --git a/test/serve/server/test_worker.py b/test/serve/server/test_worker.py new file mode 100644 index 000000000..f8b4e02b8 --- /dev/null +++ b/test/serve/server/test_worker.py @@ -0,0 +1,241 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +import tempfile +from pathlib import Path +from unittest.mock import MagicMock, patch + +import pytest + +from earth2studio.serve.server.worker import get_output_path, run_custom_workflow + + +class TestGetOutputPath: + """Tests for get_output_path.""" + + def test_returns_path_with_default_backend_when_io_config_none(self): + """When io_config is None, backend_type defaults to zarr.""" + with tempfile.TemporaryDirectory() as tmpdir: + default_dir = Path(tmpdir) + with ( + patch( + "earth2studio.serve.server.worker.DEFAULT_OUTPUT_DIR", + default_dir, + ), + ): + out = get_output_path( + io_config=None, + timestamp="2024-01-01T12:00:00Z", + workflow_type="my_workflow", + request_id="req_123", + ) + assert out.suffix == ".zarr" + assert out.name == "forecast.zarr" + assert "my_workflow" in str(out) + assert "req_123" in str(out) + assert out.parent.exists() + + def test_uses_backend_type_from_io_config(self): + """When io_config has backend_type, output file uses that extension.""" + with tempfile.TemporaryDirectory() as tmpdir: + default_dir = Path(tmpdir) + with ( + patch( + "earth2studio.serve.server.worker.DEFAULT_OUTPUT_DIR", + default_dir, + ), + ): + out = get_output_path( + io_config={"backend_type": "netcdf4"}, + timestamp="2024-01-01T00:00:00", + workflow_type="wf", + request_id="r1", + ) + assert out.suffix == ".netcdf4" or "netcdf4" in out.name + assert out.name == "forecast.netcdf4" + + def test_normalizes_timestamp_in_path(self): + """Timestamp is normalized (colons, Z, + removed) in directory name.""" + with tempfile.TemporaryDirectory() as tmpdir: + default_dir = Path(tmpdir) + with ( + patch( + "earth2studio.serve.server.worker.DEFAULT_OUTPUT_DIR", + default_dir, + ), + ): + out = get_output_path( + io_config=None, + timestamp="2024-01-01T12:00:00+00:00", + workflow_type="w", + request_id="r", + ) + # Directory should not contain : or + or Z + dir_name = out.parent.name + assert ":" not in dir_name + assert "Z" not in dir_name + assert "+" not in dir_name + + +class TestRunCustomWorkflow: + """Tests for run_custom_workflow.""" + + def test_raises_value_error_when_workflow_not_in_registry(self): + """Raises ValueError when workflow name is not registered.""" + with patch( + "earth2studio.serve.server.worker.workflow_registry" + ) as mock_registry: + mock_registry.get_workflow_class.return_value = None + + with pytest.raises(ValueError, match="not found in registry"): + run_custom_workflow( + workflow_name="nonexistent", + execution_id="exec_1", + parameters={}, + ) + + def test_raises_value_error_when_workflow_cannot_be_instantiated(self): + """Raises ValueError when registry.get returns None (instantiation failed).""" + with patch( + "earth2studio.serve.server.worker.workflow_registry" + ) as mock_registry: + mock_registry.get_workflow_class.return_value = MagicMock() + mock_registry.get.return_value = None + + with pytest.raises(ValueError, match="could not be instantiated"): + run_custom_workflow( + workflow_name="my_workflow", + execution_id="exec_1", + parameters={}, + ) + + def test_success_returns_result_and_queues_next_stage(self): + """On success, returns workflow result and queue_next_stage is called.""" + mock_workflow_class = MagicMock() + mock_workflow = MagicMock() + mock_workflow.run.return_value = {"result": "ok"} + with tempfile.TemporaryDirectory() as tmpdir: + safe_out = Path(tmpdir) / "out" + safe_results_zip = Path(tmpdir) / "results_zip" + mock_workflow.get_output_path.return_value = safe_out + + with ( + patch( + "earth2studio.serve.server.worker.workflow_registry" + ) as mock_registry, + patch( + "earth2studio.serve.server.worker.redis_client", + MagicMock(), + ), + patch( + "earth2studio.serve.server.worker.queue_next_stage", + return_value="job_123", + ) as mock_queue, + patch( + "earth2studio.serve.server.worker.RESULTS_ZIP_DIR", + safe_results_zip, + ), + ): + mock_registry.get_workflow_class.return_value = mock_workflow_class + mock_registry.get.return_value = mock_workflow + + result = run_custom_workflow( + workflow_name="my_workflow", + execution_id="exec_1", + parameters={"key": "value"}, + ) + + assert result == {"result": "ok"} + mock_workflow.run.assert_called_once_with({"key": "value"}, "exec_1") + mock_queue.assert_called_once() + call_kw = mock_queue.call_args[1] + assert call_kw["workflow_name"] == "my_workflow" + assert call_kw["execution_id"] == "exec_1" + assert call_kw["current_stage"] == "inference" + + def test_raises_runtime_error_when_queue_next_stage_fails(self): + """When queue_next_stage returns None, raises RuntimeError and updates status.""" + mock_workflow_class = MagicMock() + mock_workflow = MagicMock() + mock_workflow.run.return_value = {} + with tempfile.TemporaryDirectory() as tmpdir: + safe_out = Path(tmpdir) / "out" + safe_results_zip = Path(tmpdir) / "results_zip" + mock_workflow.get_output_path.return_value = safe_out + + with ( + patch( + "earth2studio.serve.server.worker.workflow_registry" + ) as mock_registry, + patch( + "earth2studio.serve.server.worker.redis_client", + MagicMock(), + ), + patch( + "earth2studio.serve.server.worker.queue_next_stage", + return_value=None, + ), + patch( + "earth2studio.serve.server.worker.RESULTS_ZIP_DIR", + safe_results_zip, + ), + ): + mock_registry.get_workflow_class.return_value = mock_workflow_class + mock_registry.get.return_value = mock_workflow + + with pytest.raises(RuntimeError, match="Failed to queue next pipeline"): + run_custom_workflow( + workflow_name="my_workflow", + execution_id="exec_1", + parameters={}, + ) + + # Status should have been updated to FAILED + mock_workflow_class._update_execution_data.assert_called() + calls = mock_workflow_class._update_execution_data.call_args_list + # Last call before raise is the one with status FAILED + fail_calls = [c for c in calls if c[0][3].get("status") == "failed"] + assert len(fail_calls) >= 1 + + def test_on_run_exception_updates_status_and_reraises(self): + """When workflow.run raises, status is updated to FAILED and exception is re-raised.""" + mock_workflow_class = MagicMock() + mock_workflow = MagicMock() + mock_workflow.run.side_effect = ValueError("run failed") + + with ( + patch( + "earth2studio.serve.server.worker.workflow_registry" + ) as mock_registry, + patch( + "earth2studio.serve.server.worker.redis_client", + MagicMock(), + ), + ): + mock_registry.get_workflow_class.return_value = mock_workflow_class + mock_registry.get.return_value = mock_workflow + + with pytest.raises(ValueError, match="run failed"): + run_custom_workflow( + workflow_name="my_workflow", + execution_id="exec_1", + parameters={}, + ) + + mock_workflow_class._update_execution_data.assert_called() + calls = mock_workflow_class._update_execution_data.call_args_list + fail_updates = [c for c in calls if c[0][3].get("status") == "failed"] + assert len(fail_updates) >= 1 diff --git a/test/serve/test_workflow.py b/test/serve/server/test_workflow.py similarity index 97% rename from test/serve/test_workflow.py rename to test/serve/server/test_workflow.py index 36fc7af4f..4fb7e4259 100644 --- a/test/serve/test_workflow.py +++ b/test/serve/server/test_workflow.py @@ -24,8 +24,10 @@ import pytest import redis # type: ignore[import-untyped] -from api_server.config import get_config # type: ignore[import-untyped] -from api_server.workflow import ( # type: ignore[import-untyped] +from pydantic import Field, ValidationError # type: ignore[import-untyped] + +from earth2studio.serve.server.config import get_config # type: ignore[import-untyped] +from earth2studio.serve.server.workflow import ( # type: ignore[import-untyped] Workflow, WorkflowParameters, WorkflowProgress, @@ -36,10 +38,25 @@ register_all_workflows, workflow_registry, ) -from pydantic import Field, ValidationError # type: ignore[import-untyped] -# imitate API server environment -os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" + +@pytest.fixture(scope="module", autouse=True) +def api_active_env(): # type: ignore[no-untyped-def] + """ + Set EARTH2STUDIO_API_ACTIVE=1 for tests in this module only; restore afterward. + + Ensures workflow registration is enabled during these tests without + affecting other test modules. + """ + old = os.environ.pop("EARTH2STUDIO_API_ACTIVE", None) + os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" + try: + yield + finally: + if old is not None: + os.environ["EARTH2STUDIO_API_ACTIVE"] = old + else: + os.environ.pop("EARTH2STUDIO_API_ACTIVE", None) def get_test_config(base_path: str | None = None): # type: ignore[no-untyped-def] @@ -61,11 +78,13 @@ def setup_test_paths(): # type: ignore[no-untyped-def] test_config = get_test_config(tmpdir) with ( patch( - "api_server.config.get_config", + "earth2studio.serve.server.workflow.get_config", return_value=test_config, ), - patch("api_server.config.get_config", return_value=test_config), - patch("api_server.workflow.workflow.config", test_config), + patch( + "earth2studio.serve.server.config.get_config", return_value=test_config + ), + patch("earth2studio.serve.server.workflow.config", test_config), ): yield test_config @@ -1630,7 +1649,7 @@ def test_discover_and_register_from_directories_with_python_file(self): workflow_file = Path(tmpdir) / "test_workflow_module.py" workflow_file.write_text( """ -from api_server.workflow import Workflow, WorkflowParameters, workflow_registry +from earth2studio.serve.server.workflow import Workflow, WorkflowParameters, workflow_registry class SimpleWorkflow(Workflow): # No __init__ needed - name and description set by registry @@ -1652,7 +1671,7 @@ def run(self, parameters, execution_id): successful, failed = self.registry.discover_and_register_from_directories( [tmpdir], include_builtin=False ) - from api_server.workflow import workflow_registry + from earth2studio.serve.server.workflow import workflow_registry assert successful == 1 assert failed == 0 @@ -1686,7 +1705,7 @@ def test_discover_and_register_filters_init_files(self): assert successful == 0 assert failed == 0 - @patch("api_server.workflow.workflow.Path") + @patch("earth2studio.serve.server.workflow.Path") def test_discover_and_register_with_builtin(self, mock_path): """Test discovering workflows with built-in workflows""" # Mock the builtin workflows directory to not exist @@ -1709,7 +1728,7 @@ def test_auto_register_workflows(self): with ( patch( - "api_server.workflow.workflow.parse_workflow_directories_from_env", + "earth2studio.serve.server.workflow.parse_workflow_directories_from_env", return_value=[], ), patch.object( @@ -1729,7 +1748,7 @@ def test_auto_register_workflows_with_error(self): mock_redis = Mock(spec=redis.Redis) with patch( - "api_server.workflow.workflow.parse_workflow_directories_from_env", + "earth2studio.serve.server.workflow.parse_workflow_directories_from_env", side_effect=Exception("Test error"), ): with pytest.raises(Exception, match="Test error"): diff --git a/test/serve/test_cleanup_daemon.py b/test/serve/test_cleanup_daemon.py deleted file mode 100644 index e25cc9944..000000000 --- a/test/serve/test_cleanup_daemon.py +++ /dev/null @@ -1,502 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -""" -Unit tests for the cleanup daemon. - -This module tests the cleanup daemon functionality with mocked Redis and filesystem operations. -""" - -import json -from datetime import datetime, timedelta, timezone -from unittest.mock import MagicMock, patch - -import pytest -from api_server.cleanup_daemon import ( - _delete_result_files, - _process_expired_key, - cleanup_expired_results, -) -from api_server.config import get_config -from api_server.workflow import WorkflowStatus - - -class TestDeleteResultFiles: - """Test suite for _delete_result_files function""" - - @pytest.fixture - def mock_redis(self): - """Create a mock Redis client""" - return MagicMock() - - def test_delete_workflow_files_with_workflow_name(self, mock_redis): - """Test deletion of workflow execution files including workflow-specific directories and metadata""" - # Setup - workflow_name = "custom_workflow" - execution_id = "exec_456" - combined_id = f"{workflow_name}:{execution_id}" - zip_filename = f"workflow_{combined_id}.zip" - - mock_redis.get.return_value = zip_filename - - # Mock zip file - mock_zip_file = MagicMock() - mock_zip_file.exists.return_value = True - mock_zip_file.unlink = MagicMock() - - # Mock metadata file for workflow - mock_metadata_file = MagicMock() - mock_metadata_file.is_file.return_value = True - mock_metadata_file.is_dir.return_value = False - mock_metadata_file.name = f"metadata_{combined_id}.json" - mock_metadata_file.unlink = MagicMock() - - # Mock workflow directory - mock_workflow_dir = MagicMock() - mock_workflow_dir.exists.return_value = True - - mock_workflow_subdir = MagicMock() - mock_workflow_subdir.is_dir.return_value = True - mock_workflow_subdir.is_file.return_value = False - mock_workflow_subdir.name = f"output_{execution_id}" - - mock_workflow_dir.iterdir.return_value = [mock_workflow_subdir] - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_output_dir.__truediv__ = lambda self, other: mock_workflow_dir - - mock_zip_dir = MagicMock() - mock_zip_dir.__truediv__ = lambda self, other: mock_zip_file - mock_zip_dir.iterdir.return_value = [mock_metadata_file] - - with ( - patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), - patch( - "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", - mock_output_dir, - ), - patch("api_server.cleanup_daemon.shutil.rmtree") as mock_rmtree, - ): - # Execute - _delete_result_files( - mock_redis, combined_id, execution_id, workflow_name=workflow_name - ) - - # Verify zip file deleted - mock_zip_file.unlink.assert_called_once() - - # Verify metadata file deleted - mock_metadata_file.unlink.assert_called_once() - - # Verify workflow-specific directory deleted - mock_rmtree.assert_called_once_with(mock_workflow_subdir) - - def test_delete_files_no_zip_in_redis(self, mock_redis): - """Test deletion when no zip file is found in Redis""" - # Setup - result_id = "result_789" - mock_redis.get.return_value = None - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - - with ( - patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), - patch( - "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", - mock_output_dir, - ), - ): - # Execute - should not raise exception - _delete_result_files(mock_redis, result_id, result_id) - - # Verify Redis was queried - mock_redis.get.assert_called_once() - - -class TestProcessExpiredKey: - """Test suite for _process_expired_key function""" - - @pytest.fixture - def mock_redis(self): - """Create a mock Redis client""" - return MagicMock() - - @pytest.fixture - def mock_delete_func(self): - """Create a mock delete function""" - return MagicMock() - - def test_process_expired_key_success(self, mock_redis, mock_delete_func): - """Test successful processing of an expired key""" - # Setup - key = "workflow_execution:wf1:exec_123" - current_time = datetime.now(timezone.utc) - old_time = current_time - timedelta(hours=25) # 25 hours ago - results_ttl_hours = 24 - - request_data = { - "status": WorkflowStatus.COMPLETED, - "end_time": old_time.isoformat(), - "execution_id": "exec_123", - } - - mock_redis.get.return_value = json.dumps(request_data) - config = get_config() - - # Execute - result = _process_expired_key( - redis_client=mock_redis, - key=key, - current_time=current_time, - results_ttl_hours=results_ttl_hours, - expected_status=WorkflowStatus.COMPLETED, - get_end_time_field="end_time", - delete_files_func=mock_delete_func, - log_prefix="workflow", - ) - - # Verify - assert result is True - mock_delete_func.assert_called_once_with(mock_redis, key) - mock_redis.setex.assert_called_once() - args = mock_redis.setex.call_args[0] - assert args[0] == key - assert args[1] == config.redis.retention_ttl - updated_data = json.loads(args[2]) - assert updated_data["status"] == WorkflowStatus.EXPIRED - - def test_process_expired_key_not_expired(self, mock_redis, mock_delete_func): - """Test processing of a key that is not yet expired""" - # Setup - key = "workflow_execution:wf1:exec_456" - current_time = datetime.now(timezone.utc) - recent_time = current_time - timedelta(hours=12) # 12 hours ago - results_ttl_hours = 24 - - request_data = { - "status": WorkflowStatus.COMPLETED, - "end_time": recent_time.isoformat(), - "execution_id": "exec_456", - } - - mock_redis.get.return_value = json.dumps(request_data) - - # Execute - result = _process_expired_key( - redis_client=mock_redis, - key=key, - current_time=current_time, - results_ttl_hours=results_ttl_hours, - expected_status=WorkflowStatus.COMPLETED, - get_end_time_field="end_time", - delete_files_func=mock_delete_func, - log_prefix="workflow", - ) - - # Verify - should not clean up - assert result is False - mock_delete_func.assert_not_called() - mock_redis.setex.assert_not_called() - - -class TestCleanupExpiredResults: - """Test suite for cleanup_expired_results function""" - - @pytest.fixture - def mock_redis(self): - """Create a mock Redis client""" - return MagicMock() - - @pytest.fixture - def mock_config(self): - """Mock the config""" - with patch("api_server.cleanup_daemon.config") as mock_cfg: - mock_cfg.server.results_ttl_hours = 24 - mock_cfg.redis.retention_ttl = 604800 - yield mock_cfg - - def test_cleanup_expired_results_workflow_only(self, mock_redis, mock_config): - """Test cleanup with workflow executions only""" - # Setup - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - recent_time = (current_time - timedelta(hours=12)).isoformat() - - # Mock Redis keys - only workflow keys - mock_redis.keys.return_value = [ - "workflow_execution:wf1:exec_old", - "workflow_execution:wf2:exec_recent", - ] - - # Mock Redis get responses - def get_side_effect(key): - if key == "workflow_execution:wf1:exec_old": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": old_time} - ) - elif key == "workflow_execution:wf2:exec_recent": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": recent_time} - ) - return None - - mock_redis.get.side_effect = get_side_effect - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_output_dir.__truediv__ = lambda self, other: MagicMock( - exists=lambda: False - ) - - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - - with ( - patch("api_server.cleanup_daemon._delete_result_files"), - patch( - "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", - mock_output_dir, - ), - patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), - ): - # Execute - cleanup_expired_results(mock_redis) - - # Verify - should process 1 workflow (exec_old), skip exec_recent - assert mock_redis.setex.call_count == 1 - - # Verify the expired key was updated - setex_calls = mock_redis.setex.call_args_list - expired_keys = [call[0][0] for call in setex_calls] - assert "workflow_execution:wf1:exec_old" in expired_keys - - def test_cleanup_expired_results_no_keys(self, mock_redis, mock_config): - """Test cleanup when there are no keys in Redis""" - # Setup - mock_redis.keys.return_value = [] - - # Execute - cleanup_expired_results(mock_redis) - - # Verify - no cleanup operations - mock_redis.setex.assert_not_called() - - def test_cleanup_expired_results_all_recent(self, mock_redis, mock_config): - """Test cleanup when all workflow keys are recent (not expired)""" - # Setup - current_time = datetime.now(timezone.utc) - recent_time = (current_time - timedelta(hours=5)).isoformat() - - mock_redis.keys.return_value = [ - "workflow_execution:wf1:exec_1", - "workflow_execution:wf2:exec_2", - ] - - mock_redis.get.return_value = json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": recent_time} - ) - - # Execute - cleanup_expired_results(mock_redis) - - # Verify - no cleanup operations (not expired) - mock_redis.setex.assert_not_called() - - def test_cleanup_expired_results_redis_get_failure(self, mock_redis, mock_config): - """Test cleanup handles Redis get failures gracefully""" - # Setup - mock_redis.keys.return_value = [ - "workflow_execution:wf_fail:exec_1", - "workflow_execution:wf_ok:exec_2", - ] - - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - - # First key causes exception, second succeeds - def get_side_effect(key): - if key == "workflow_execution:wf_fail:exec_1": - raise Exception("Redis connection error") - elif key == "workflow_execution:wf_ok:exec_2": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": old_time} - ) - return None - - mock_redis.get.side_effect = get_side_effect - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_output_dir.__truediv__ = lambda self, other: MagicMock( - exists=lambda: False - ) - - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - - with ( - patch("api_server.cleanup_daemon._delete_result_files"), - patch( - "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", - mock_output_dir, - ), - patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), - ): - # Execute - should not raise exception - cleanup_expired_results(mock_redis) - - # Verify - exec_2 should still be processed despite exec_1 error - assert mock_redis.setex.call_count == 1 - assert mock_redis.setex.call_args[0][0] == "workflow_execution:wf_ok:exec_2" - - def test_cleanup_expired_results_delete_files_failure( - self, mock_redis, mock_config - ): - """Test cleanup handles file deletion failures gracefully and does not mark as expired""" - # Setup - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - - mock_redis.keys.return_value = ["workflow_execution:wf_fail:exec_fail"] - - mock_redis.get.return_value = json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": old_time} - ) - - with patch("api_server.cleanup_daemon._delete_result_files") as mock_delete: - mock_delete.side_effect = Exception("File deletion error") - - # Execute - should handle exception and continue - cleanup_expired_results(mock_redis) - - # Verify delete was attempted - mock_delete.assert_called_once() - - # Status should NOT be updated if file deletion fails - # (we want to retry cleanup on next run) - assert mock_redis.setex.call_count == 0 - - def test_cleanup_expired_results_workflow_execution(self, mock_redis, mock_config): - """Test cleanup of workflow execution keys""" - # Setup - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - - mock_redis.keys.return_value = ["workflow_execution:my_workflow:exec_123"] - - mock_redis.get.return_value = json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": old_time} - ) - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_output_dir.__truediv__ = lambda self, other: MagicMock( - exists=lambda: False - ) - - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - - with ( - patch("api_server.cleanup_daemon._delete_result_files") as mock_delete, - patch( - "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", - mock_output_dir, - ), - patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), - ): - # Execute - cleanup_expired_results(mock_redis) - - # Verify workflow was cleaned up - assert mock_redis.setex.call_count == 1 - assert ( - mock_redis.setex.call_args[0][0] - == "workflow_execution:my_workflow:exec_123" - ) - - # Verify delete was called with correct parameters - mock_delete.assert_called_once() - call_args = mock_delete.call_args - assert call_args[1]["result_id"] == "my_workflow:exec_123" - assert call_args[1]["search_id"] == "exec_123" - assert call_args[1]["workflow_name"] == "my_workflow" - - def test_cleanup_expired_results_custom_ttl_config(self, mock_redis): - """Test cleanup with custom TTL configuration""" - # Setup custom config - with patch("api_server.cleanup_daemon.config") as mock_cfg: - mock_cfg.server.results_ttl_hours = 48 # Custom 48 hour TTL - mock_cfg.redis.retention_ttl = 604800 - - current_time = datetime.now(timezone.utc) - # 30 hours ago - should NOT be expired with 48 hour TTL - time_30h_ago = (current_time - timedelta(hours=30)).isoformat() - # 50 hours ago - should be expired with 48 hour TTL - time_50h_ago = (current_time - timedelta(hours=50)).isoformat() - - mock_redis.keys.return_value = [ - "workflow_execution:wf_30h:exec_30h", - "workflow_execution:wf_50h:exec_50h", - ] - - def get_side_effect(key): - if key == "workflow_execution:wf_30h:exec_30h": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": time_30h_ago} - ) - elif key == "workflow_execution:wf_50h:exec_50h": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": time_50h_ago} - ) - return None - - mock_redis.get.side_effect = get_side_effect - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_output_dir.__truediv__ = lambda self, other: MagicMock( - exists=lambda: False - ) - - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - - with ( - patch("api_server.cleanup_daemon._delete_result_files"), - patch( - "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", - mock_output_dir, - ), - patch( - "api_server.cleanup_daemon.RESULTS_ZIP_DIR", - mock_zip_dir, - ), - ): - # Execute - cleanup_expired_results(mock_redis) - - # Verify - only exec_50h should be cleaned up - assert mock_redis.setex.call_count == 1 - assert ( - mock_redis.setex.call_args[0][0] - == "workflow_execution:wf_50h:exec_50h" - ) diff --git a/test/serve/test_cpu_worker.py b/test/serve/test_cpu_worker.py deleted file mode 100644 index f29836e26..000000000 --- a/test/serve/test_cpu_worker.py +++ /dev/null @@ -1,743 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -""" -Unit tests for the CPU worker module. - -This module tests CPU-intensive functions that can be offloaded from the main worker process. -""" - -import json -import sys -import tempfile -import zipfile -from dataclasses import dataclass, field -from datetime import datetime -from typing import Literal -from unittest.mock import Mock - -import pytest -import redis - - -# Create mock config classes before importing cpu_worker -@dataclass -class MockRedisConfig: - """Mock Redis configuration""" - - host: str = "localhost" - port: int = 6379 - db: int = 0 - password: str | None = None - socket_connect_timeout: int = 5 - socket_timeout: int = 5 - decode_responses: bool = True - retention_ttl: int = 604800 # Redis key retention TTL in seconds (7 days) - - -@dataclass -class MockQueueConfig: - """Mock queue configuration""" - - name: str = "inference" - result_zip_queue_name: str = "result_zip" - object_storage_queue_name: str = "object_storage" - finalize_metadata_queue_name: str = "finalize_metadata" - max_size: int = 10 - default_timeout: str = "1h" - job_timeout: str = "2h" - - -# Secure temp dir for mock path defaults (S108) -_secure_test_dir = tempfile.mkdtemp(prefix="e2s_testing_") - - -@dataclass -class MockPathsConfig: - """Mock paths configuration""" - - default_output_dir: str = field(default_factory=lambda: _secure_test_dir) - results_zip_dir: str = field(default_factory=lambda: _secure_test_dir) - output_format: Literal["zarr", "netcdf4"] = "zarr" - result_zip_enabled: bool = False - - -@dataclass -class MockLoggingConfig: - """Mock logging configuration""" - - level: str = "INFO" - format: str = "%(asctime)s - %(name)s - %(levelname)s - %(message)s" - - -@dataclass -class MockServerConfig: - """Mock server configuration""" - - host: str = "0.0.0.0" # noqa: S104 - port: int = 8000 - workers: int = 1 - title: str = "REST API" - description: str = "REST API for running workflows" - version: str = "1.0.0" - docs_url: str = "/docs" - redoc_url: str = "/redoc" - - -@dataclass -class MockCORSConfig: - """Mock CORS configuration""" - - allow_origins: list = field(default_factory=lambda: ["*"]) - allow_credentials: bool = True - allow_methods: list = field(default_factory=lambda: ["*"]) - allow_headers: list = field(default_factory=lambda: ["*"]) - - -@dataclass -class MockObjectStorageConfig: - """Mock object storage configuration""" - - enabled: bool = False - bucket: str | None = None - region: str = "us-east-1" - prefix: str = "outputs" - access_key_id: str | None = None - secret_access_key: str | None = None - session_token: str | None = None - cloudfront_domain: str | None = None - cloudfront_key_pair_id: str | None = None - cloudfront_private_key_path: str | None = None - signed_url_expires_in: int = 3600 - - -@dataclass -class MockAppConfig: - """Mock root configuration""" - - redis: MockRedisConfig = field(default_factory=MockRedisConfig) - queue: MockQueueConfig = field(default_factory=MockQueueConfig) - paths: MockPathsConfig = field(default_factory=MockPathsConfig) - logging: MockLoggingConfig = field(default_factory=MockLoggingConfig) - server: MockServerConfig = field(default_factory=MockServerConfig) - cors: MockCORSConfig = field(default_factory=MockCORSConfig) - object_storage: MockObjectStorageConfig = field( - default_factory=MockObjectStorageConfig - ) - - -# Create a mock config module -mock_config_module = Mock() -mock_config_module.AppConfig = MockAppConfig -mock_config_module.get_config = Mock(return_value=MockAppConfig()) -mock_config_module.get_config_manager = Mock() - -# Inject the mock before importing cpu_worker -sys.modules["api_server.config"] = mock_config_module - -# Now import the module under test -from api_server.cpu_worker import create_results_zip # noqa: E402 - - -class TestCreateResultsZip: - """Test suite for create_results_zip function""" - - @pytest.fixture - def mock_redis(self): - """Mock Redis client""" - return Mock(spec=redis.Redis) - - @pytest.fixture - def inference_request(self): - """Sample inference request data""" - return { - "id": "test_req_123", - "type": "deterministic", - "status": "completed", - "completion_time": "2024-01-01T12:00:00Z", - "execution_time_seconds": 45.5, - "created_at": "2024-01-01T11:00:00Z", - "peak_memory_usage": "2.5GB", - "device": "cuda:0", - "request": { - "workflow_type": "deterministic", - "time": "2024-01-01T00:00:00Z", - "nsteps": 10, - "prognostic": {"model_type": "fcn"}, - "data": {"source_type": "gfs"}, - "io": {"backend_type": "zarr"}, - }, - } - - def test_create_results_zip_with_single_file( - self, mock_redis, inference_request, tmp_path - ): - """Test creating zip with a single output file""" - # Create a temporary output file - output_file = tmp_path / "output.nc" - output_file.write_text("test data content") - file_size = output_file.stat().st_size - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_req_123", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Verify zip file was created - filename is now just request_id - assert zip_filename is not None - assert zip_filename == "test_req_123" - - zip_path = results_zip_dir / zip_filename - assert zip_path.exists() - - # Verify Redis was updated (4 times: metadata, results_zip_dir, zip, output_path) - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - - # First call: metadata (stored in Redis for finalize worker) - assert calls[0][0][0] == "inference_request:test_req_123:pending_metadata" - - # Second call: results_zip_dir path - assert calls[1][0][0] == "inference_request:test_req_123:results_zip_dir" - assert calls[1][0][2] == str(results_zip_dir) - - # Third call: zip filename - assert calls[2][0][0] == "inference_request_zips:test_req_123:zip_file" - assert calls[2][0][2] == zip_filename - - # Fourth call: output path - assert calls[3][0][0] == "inference_request:test_req_123:output_path" - assert calls[3][0][1] == 86400 # 24 hours - assert calls[3][0][2] == str(output_file) - - # Verify zip contents - metadata.json is NOT in the zip - with zipfile.ZipFile(zip_path, "r") as zf: - file_list = zf.namelist() - assert "metadata.json" not in file_list # metadata is now separate - assert "output.nc" in file_list - - # Verify metadata is stored in Redis (not as file - file is created by finalize worker) - # Get the metadata from the first setex call - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Verify metadata structure - assert metadata["request_id"] == "test_req_123" - assert metadata["status"] == "completed" - assert metadata["workflow_type"] == "deterministic" - assert metadata["execution_time_seconds"] == 45.5 - assert metadata["device"] == "cuda:0" - assert "zip_created_at" in metadata - - # Verify parameters field - assert "parameters" in metadata - assert metadata["parameters"] == inference_request["request"] - assert metadata["parameters"]["workflow_type"] == "deterministic" - assert metadata["parameters"]["nsteps"] == 10 - - # Verify output_files manifest includes both the file AND the zip - assert "output_files" in metadata - assert isinstance(metadata["output_files"], list) - assert len(metadata["output_files"]) == 2 # output.nc + zip file entry - - # Convert to dict for easier checking - files_dict = {f["path"]: f["size"] for f in metadata["output_files"]} - - # Check the output file entry - assert "output.nc" in files_dict - assert files_dict["output.nc"] == file_size - - # Check the zip file entry (path = request_id) - assert "test_req_123" in files_dict - assert files_dict["test_req_123"] == zip_path.stat().st_size - - def test_create_results_zip_with_directory( - self, mock_redis, inference_request, tmp_path - ): - """Test creating zip with a directory containing multiple files""" - # Create a temporary output directory with files - output_dir = tmp_path / "output_data" - output_dir.mkdir() - - file1 = output_dir / "data1.nc" - file1.write_text("data 1 content") - file1_size = file1.stat().st_size - - file2 = output_dir / "data2.nc" - file2.write_text("data 2 content with more text") - file2_size = file2.stat().st_size - - # Create subdirectory - subdir = output_dir / "plots" - subdir.mkdir() - file3 = subdir / "plot.png" - file3.write_bytes(b"fake png data") - file3_size = file3.stat().st_size - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_req_456", - output_path=output_dir, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Verify zip file was created - filename is now just request_id - assert zip_filename is not None - assert zip_filename == "test_req_456" - zip_path = results_zip_dir / zip_filename - assert zip_path.exists() - - # Verify zip contents - metadata.json is NOT in the zip - with zipfile.ZipFile(zip_path, "r") as zf: - file_list = zf.namelist() - assert "metadata.json" not in file_list - - # Verify files exist in zip - assert "output_data/data1.nc" in file_list - assert "output_data/data2.nc" in file_list - assert "output_data/plots/plot.png" in file_list - - # Verify metadata is stored in Redis (not as file) - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Verify output_files manifest (3 files + 1 zip entry) - assert "output_files" in metadata - output_files = metadata["output_files"] - assert len(output_files) == 4 # 3 files + zip entry - - # Convert to dict for easier checking - files_dict = {f["path"]: f["size"] for f in output_files} - - # Verify all files are in manifest with correct sizes - assert "output_data/data1.nc" in files_dict - assert files_dict["output_data/data1.nc"] == file1_size - - assert "output_data/data2.nc" in files_dict - assert files_dict["output_data/data2.nc"] == file2_size - - assert "output_data/plots/plot.png" in files_dict - assert files_dict["output_data/plots/plot.png"] == file3_size - - # Verify zip file entry (path = request_id) - assert "test_req_456" in files_dict - assert files_dict["test_req_456"] == zip_path.stat().st_size - - def test_create_results_zip_with_nonexistent_output( - self, mock_redis, inference_request, tmp_path - ): - """Test creating zip when output path doesn't exist""" - # Use nonexistent path - output_path = tmp_path / "nonexistent" - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_req_789", - output_path=output_path, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Should still create zip - filename is now just request_id - assert zip_filename is not None - assert zip_filename == "test_req_789" - zip_path = results_zip_dir / zip_filename - assert zip_path.exists() - - # Verify zip contents - should be empty (no output files) - with zipfile.ZipFile(zip_path, "r") as zf: - file_list = zf.namelist() - assert len(file_list) == 0 # No files in zip - - # Verify metadata is stored in Redis (not as file) - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # output_files should only contain the zip entry - assert "output_files" in metadata - assert len(metadata["output_files"]) == 1 # Only zip entry - assert metadata["output_files"][0]["path"] == "test_req_789" - - def test_create_results_zip_parameters_validation( - self, mock_redis, inference_request, tmp_path - ): - """Test that parameters are correctly stored in metadata""" - # Create a temporary output file - output_file = tmp_path / "output.nc" - output_file.write_text("test") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Modify inference request to have specific parameters - inference_request["request"] = { - "workflow_type": "ensemble", - "time": "2024-01-15T00:00:00Z", - "nsteps": 20, - "nensemble": 10, - "prognostic": {"model_type": "graphcast"}, - "data": {"source_type": "era5"}, - "io": {"backend_type": "netcdf"}, - "perturbation": {"method": "spherical_gaussian"}, - } - - # Call create_results_zip - result = create_results_zip( - request_id="test_req_params", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - assert result is not None - - # Verify metadata is stored in Redis (not as file) - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Verify parameters field exists and matches - assert "parameters" in metadata - params = metadata["parameters"] - - assert params["workflow_type"] == "ensemble" - assert params["time"] == "2024-01-15T00:00:00Z" - assert params["nsteps"] == 20 - assert params["nensemble"] == 10 - assert params["prognostic"]["model_type"] == "graphcast" - assert params["data"]["source_type"] == "era5" - assert params["io"]["backend_type"] == "netcdf" - assert params["perturbation"]["method"] == "spherical_gaussian" - - def test_create_results_zip_file_manifest_structure( - self, mock_redis, inference_request, tmp_path - ): - """Test that file manifest has correct structure""" - # Create output directory with multiple files - output_dir = tmp_path / "outputs" - output_dir.mkdir() - - for i in range(5): - file = output_dir / f"file_{i}.dat" - file.write_text(f"content {i}" * 100) - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_manifest", - output_path=output_dir, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Verify metadata is stored in Redis - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - manifest = metadata["output_files"] - - # Verify manifest structure (5 files + 1 zip entry) - assert isinstance(manifest, list) - assert len(manifest) == 6 # 5 files + zip entry - - # Find the zip entry (path = request_id) - zip_entry = None - file_entries = [] - for entry in manifest: - if entry["path"] == "test_manifest": - zip_entry = entry - else: - file_entries.append(entry) - - assert zip_entry is not None - assert len(file_entries) == 5 - - # Verify file entries structure - zip_path = results_zip_dir / zip_filename - with zipfile.ZipFile(zip_path, "r") as zf: - for entry in file_entries: - assert isinstance(entry, dict) - assert "path" in entry - assert "size" in entry - assert isinstance(entry["path"], str) - assert isinstance(entry["size"], int) - assert entry["size"] > 0 - - # Verify path starts with output directory name - assert entry["path"].startswith("outputs/") - - # Verify size matches actual file in zip - actual_size = zf.getinfo(entry["path"]).file_size - assert entry["size"] == actual_size - - def test_create_results_zip_missing_request_parameters(self, mock_redis, tmp_path): - """Test handling when request doesn't have parameters field""" - # Create inference request without 'request' field - inference_request = { - "id": "test_req_no_params", - "type": "deterministic", - "status": "completed", - } - - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_req_no_params", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Verify zip was created - assert zip_filename is not None - - # Verify metadata stored in Redis - parameters should be None - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Parameters should be None or not present - assert metadata.get("parameters") is None - - def test_create_results_zip_redis_failure( - self, mock_redis, inference_request, tmp_path - ): - """Test handling when Redis operation fails""" - # Make Redis setex raise an exception - mock_redis.setex.side_effect = Exception("Redis connection failed") - - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - should handle exception gracefully - zip_filename = create_results_zip( - request_id="test_redis_fail", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Should return None since storing in Redis failed - assert zip_filename is None - - def test_create_results_zip_exception_handling(self, mock_redis, tmp_path): - """Test general exception handling""" - # Use invalid inference request that will cause issues - invalid_request = None - - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip with invalid data - zip_filename = create_results_zip( - request_id="test_exception", - output_path=output_file, - inference_request=invalid_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Should return None on exception - assert zip_filename is None - - def test_create_results_zip_metadata_completeness( - self, mock_redis, inference_request, tmp_path - ): - """Test that all expected metadata fields are present""" - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test data") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_metadata", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - assert zip_filename is not None - - # Verify metadata stored in Redis - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Check all expected fields - required_fields = [ - "request_id", - "status", - "completion_time", - "execution_time_seconds", - "workflow_type", - "created_at", - "peak_memory_usage", - "device", - "zip_created_at", - "parameters", - "output_files", - ] - - for f in required_fields: - assert f in metadata, f"Missing required field: {field}" - - # Verify zip_created_at is a valid timestamp - zip_created_at = metadata["zip_created_at"] - assert zip_created_at.endswith("Z") - # Should be parseable as ISO format - datetime.fromisoformat(zip_created_at.replace("Z", "+00:00")) - - def test_create_results_zip_manifest_includes_zip_entry( - self, mock_redis, inference_request, tmp_path - ): - """Test that the manifest includes an entry for the zip file itself""" - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test data content") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - request_id = "test_zip_entry" - - # Call create_results_zip - zip_filename = create_results_zip( - request_id=request_id, - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - assert zip_filename is not None - - zip_path = results_zip_dir / zip_filename - zip_size = zip_path.stat().st_size - - # Verify metadata stored in Redis - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Find the zip entry in manifest - zip_entry = None - for entry in metadata["output_files"]: - if entry["path"] == request_id: - zip_entry = entry - break - - # Verify zip entry exists and has correct size - assert zip_entry is not None, "Zip file entry not found in manifest" - assert zip_entry["path"] == request_id - assert zip_entry["size"] == zip_size - - def test_create_results_zip_output_path_stored_in_redis( - self, mock_redis, inference_request, tmp_path - ): - """Test that output path is stored in Redis""" - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test data") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_output_path", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - assert zip_filename is not None - - # Verify Redis setex was called 4 times (metadata, results_zip_dir, zip, output_path) - assert mock_redis.setex.call_count == 4 - - # Check the output path call (4th call) - calls = mock_redis.setex.call_args_list - output_path_call = calls[3] - - assert ( - output_path_call[0][0] == "inference_request:test_output_path:output_path" - ) - assert output_path_call[0][1] == 86400 # 24 hours - assert output_path_call[0][2] == str(output_file) - - -if __name__ == "__main__": - pytest.main([__file__, "-v"]) diff --git a/test/serve/test_main.py b/test/serve/test_main.py deleted file mode 100644 index 964fc9922..000000000 --- a/test/serve/test_main.py +++ /dev/null @@ -1,1213 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -""" -Unit tests for api_server.main module. - -Tests the FastAPI endpoints including the workflow schema endpoint. -""" - -import os -from typing import Any -from unittest.mock import AsyncMock, MagicMock, patch - -import pytest -from fastapi.testclient import TestClient -from pydantic import Field - -# Set API environment variable before importing main -os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" - -# Patch FastAPI route creation to handle union return types -# This fixes the issue where FastAPI can't handle dict[str, Any] | StreamingResponse -# ruff: noqa: E402 -import fastapi # type: ignore[import-untyped] -import fastapi.routing # type: ignore[import-untyped] -from fastapi.exceptions import FastAPIError # type: ignore[import-untyped] - -_original_route_init = fastapi.routing.APIRoute.__init__ - - -def _patched_route_init(self, *args, **kwargs): - """Patched APIRoute.__init__ that handles union return types with StreamingResponse""" - import inspect - - from starlette.responses import StreamingResponse - - # Check if the endpoint has a union return type with StreamingResponse - endpoint = kwargs.get("endpoint") or (args[1] if len(args) > 1 else None) - if endpoint: - sig = inspect.signature(endpoint) - return_annotation = sig.return_annotation - if ( - hasattr(return_annotation, "__args__") - and StreamingResponse in return_annotation.__args__ - ): - # Set response_model=None to skip response model generation - kwargs["response_model"] = None - - try: - return _original_route_init(self, *args, **kwargs) - except FastAPIError as e: - if "Invalid args for response field" in str(e): - # Retry with response_model=None - kwargs["response_model"] = None - return _original_route_init(self, *args, **kwargs) - raise - - -# Apply the patch before any imports of api_server.main -fastapi.routing.APIRoute.__init__ = _patched_route_init - - -class TestWorkflowSchemaEndpoint: - """Tests for GET /v1/workflows/{workflow_name}/schema endpoint""" - - @pytest.fixture - def mock_workflow_class(self): - """Create a mock workflow class with Parameters""" - from api_server.workflow import Workflow, WorkflowParameters - - class TestWorkflowParameters(WorkflowParameters): - """Test parameters for unit testing""" - - forecast_times: list[str] = Field( - default=["2024-01-01T00:00:00"], - description="List of forecast initialization times", - ) - nsteps: int = Field( - default=10, - ge=1, - le=100, - description="Number of forecast steps", - ) - model_type: str = Field( - default="fcn", - description="Model type to use", - ) - - class TestWorkflow(Workflow): - name = "test_workflow" - description = "Test workflow for unit testing" - Parameters = TestWorkflowParameters - - @classmethod - def validate_parameters( - cls, parameters: dict[str, Any] | TestWorkflowParameters - ) -> TestWorkflowParameters: - return TestWorkflowParameters.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "success"} - - return TestWorkflow - - @pytest.fixture - def client(self, mock_workflow_class): - """Create test client with mocked dependencies""" - # Mock Redis and other dependencies at their source locations - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue"), - patch("api_server.workflow.register_all_workflows"), - ): - # Setup mock async Redis - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_instance.get = AsyncMock(return_value=None) - mock_async_redis.return_value = mock_async_instance - - # Setup mock sync Redis - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - - from api_server.main import app - from api_server.workflow import workflow_registry - - # Register the test workflow - workflow_registry._workflows["test_workflow"] = mock_workflow_class - - with TestClient(app, raise_server_exceptions=False) as client: - yield client - - # Cleanup - if "test_workflow" in workflow_registry._workflows: - del workflow_registry._workflows["test_workflow"] - - def test_schema_endpoint_returns_valid_json_schema( - self, client, mock_workflow_class - ): - """Test that schema endpoint returns valid JSON Schema""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - # Verify it's a valid JSON Schema structure - assert "type" in schema - assert schema["type"] == "object" - assert "properties" in schema - assert "title" in schema - - def test_schema_endpoint_includes_all_parameters(self, client, mock_workflow_class): - """Test that schema includes all defined parameters""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - properties = schema["properties"] - - # Check all parameters are present - assert "forecast_times" in properties - assert "nsteps" in properties - assert "model_type" in properties - - def test_schema_endpoint_includes_field_metadata(self, client, mock_workflow_class): - """Test that schema includes field descriptions and constraints""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - properties = schema["properties"] - - # Check forecast_times has correct type - assert properties["forecast_times"]["type"] == "array" - assert "description" in properties["forecast_times"] - - # Check nsteps has constraints - nsteps = properties["nsteps"] - assert nsteps["type"] == "integer" - assert "description" in nsteps - # Pydantic uses "minimum" and "maximum" for ge/le constraints - assert nsteps.get("minimum") == 1 or nsteps.get("exclusiveMinimum") == 0 - assert nsteps.get("maximum") == 100 or nsteps.get("exclusiveMaximum") == 101 - - def test_schema_endpoint_includes_defaults(self, client, mock_workflow_class): - """Test that schema includes default values""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - properties = schema["properties"] - - # Check defaults are included - assert properties["forecast_times"]["default"] == ["2024-01-01T00:00:00"] - assert properties["nsteps"]["default"] == 10 - assert properties["model_type"]["default"] == "fcn" - - def test_schema_endpoint_workflow_not_found(self, client): - """Test that 404 is returned for non-existent workflow""" - response = client.get("/v1/workflows/nonexistent_workflow/schema") - - assert response.status_code == 404 - error = response.json() - assert "not found" in error["detail"].lower() - - def test_schema_endpoint_openapi_compatibility(self, client, mock_workflow_class): - """Test that returned schema is OpenAPI 3.1 compatible (JSON Schema draft 2020-12)""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - # OpenAPI 3.1 / JSON Schema required fields - assert "type" in schema - assert "properties" in schema - - # Schema should be directly usable (no wrapper objects) - assert "workflow_name" not in schema - assert "parameters_schema" not in schema - - -class TestWorkflowParameterValidation: - """Test workflow parameter validation at submission time""" - - @pytest.fixture - def client(self): - """Create test client""" - from typing import Any, Literal - from unittest.mock import MagicMock, patch - - from api_server.main import app - from api_server.workflow import ( - Workflow, - WorkflowParameters, - workflow_registry, - ) - from pydantic import Field - - # Create test workflow parameter classes with Literal validation - class TestDeterministicParams(WorkflowParameters): - forecast_times: list[str] = Field(default=["2024-01-01T00:00:00"]) - nsteps: int = Field(default=6, ge=1, le=100) - model_type: Literal["dlwp", "fcn"] = Field(default="fcn") - data_source: Literal["gfs"] = Field(default="gfs") - output_format: Literal["zarr"] = Field(default="zarr") - plot_variable: Literal["t2m", "msl", "u10m", "v10m", "tcwv", "z500"] = ( - Field(default="t2m") - ) - - class TestDiagnosticParams(WorkflowParameters): - forecast_times: list[str] = Field(default=["2024-01-01T00:00:00"]) - nsteps: int = Field(default=6, ge=1, le=100) - prognostic_model_type: Literal["dlwp", "fcn"] = Field(default="fcn") - diagnostic_model_type: Literal["precipitation_afno"] = Field( - default="precipitation_afno" - ) - data_source: Literal["gfs"] = Field(default="gfs") - plot_variable: Literal[ - "tp", "t2m", "msl", "u10m", "v10m", "tcwv", "z500" - ] = Field(default="tp") - - # Create mock workflow classes - class TestDeterministicWorkflow(Workflow): - name = "deterministic_workflow" - description = "Test deterministic workflow" - Parameters = TestDeterministicParams - - @classmethod - def validate_parameters( - cls, parameters: dict[str, Any] | TestDeterministicParams - ) -> TestDeterministicParams: - try: - return TestDeterministicParams.validate(parameters) - except Exception as e: - raise ValueError(f"Invalid parameters: {e}") from e - - def run(self, parameters, execution_id): - return {"status": "success"} - - class TestDiagnosticWorkflow(Workflow): - name = "diagnostic_workflow" - description = "Test diagnostic workflow" - Parameters = TestDiagnosticParams - - @classmethod - def validate_parameters( - cls, parameters: dict[str, Any] | TestDiagnosticParams - ) -> TestDiagnosticParams: - try: - return TestDiagnosticParams.validate(parameters) - except Exception as e: - raise ValueError(f"Invalid parameters: {e}") from e - - def run(self, parameters, execution_id): - return {"status": "success"} - - # Register test workflows directly in the registry - workflow_registry._workflows["deterministic_workflow"] = ( - TestDeterministicWorkflow - ) - workflow_registry._workflows["diagnostic_workflow"] = TestDiagnosticWorkflow - - # Create mocks - mock_redis = MagicMock() - mock_queue = MagicMock() - mock_queue.__len__ = MagicMock(return_value=0) - mock_queue.max_size = 100 - - with patch("api_server.main.redis_sync_client", mock_redis): - with patch("api_server.main.inference_queue", mock_queue): - test_client = TestClient(app) - yield test_client, mock_queue, mock_redis - - def test_valid_deterministic_workflow_parameters(self, client): - """Test that valid parameters for deterministic workflow are accepted""" - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_job" - mock_queue.enqueue = MagicMock(return_value=mock_job) - mock_redis.llen = MagicMock(return_value=0) - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "fcn", - "data_source": "gfs", - "output_format": "zarr", - "plot_variable": "t2m", - } - }, - ) - - assert response.status_code == 200 - data = response.json() - assert data["status"] == "queued" - - def test_invalid_model_type_rejected(self, client): - """Test that invalid model_type is rejected at submission""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "invalid_model", # Invalid value - "data_source": "gfs", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "model_type" in data["detail"] - - def test_invalid_data_source_rejected(self, client): - """Test that invalid data_source is rejected at submission""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "fcn", - "data_source": "invalid_source", # Invalid value - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "data_source" in data["detail"] - - def test_invalid_output_format_rejected(self, client): - """Test that invalid output_format is rejected at submission""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "fcn", - "data_source": "gfs", - "output_format": "invalid_format", # Invalid value - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "output_format" in data["detail"] - - def test_invalid_plot_variable_rejected(self, client): - """Test that invalid plot_variable is rejected at submission""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "fcn", - "data_source": "gfs", - "plot_variable": "invalid_variable", # Invalid value - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "plot_variable" in data["detail"] - - def test_invalid_nsteps_range_rejected(self, client): - """Test that nsteps outside valid range is rejected""" - test_client, _, _ = client - - # Test nsteps too low - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 0, # Below minimum of 1 - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - - # Test nsteps too high - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 101, # Above maximum of 100 - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - - def test_diagnostic_workflow_invalid_model_types_rejected(self, client): - """Test that invalid model types for diagnostic workflow are rejected""" - test_client, _, _ = client - - # Test invalid prognostic model - response = test_client.post( - "/v1/infer/diagnostic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "prognostic_model_type": "invalid_prognostic", # Invalid - "diagnostic_model_type": "precipitation_afno", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "prognostic_model_type" in data["detail"] - - # Test invalid diagnostic model - response = test_client.post( - "/v1/infer/diagnostic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "prognostic_model_type": "fcn", - "diagnostic_model_type": "invalid_diagnostic", # Invalid - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "diagnostic_model_type" in data["detail"] - - def test_valid_diagnostic_workflow_parameters(self, client): - """Test that valid parameters for diagnostic workflow are accepted""" - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_job" - mock_queue.enqueue = MagicMock(return_value=mock_job) - mock_redis.llen = MagicMock(return_value=0) - - response = test_client.post( - "/v1/infer/diagnostic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "prognostic_model_type": "fcn", - "diagnostic_model_type": "precipitation_afno", - "data_source": "gfs", - "plot_variable": "tp", - } - }, - ) - - assert response.status_code == 200 - data = response.json() - assert data["status"] == "queued" - - def test_multiple_invalid_parameters_rejected(self, client): - """Test that multiple invalid parameters are caught""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 101, # Invalid: too high - "model_type": "invalid_model", # Invalid value - "data_source": "invalid_source", # Invalid value - "output_format": "invalid_format", # Invalid value - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - - def test_valid_forecast_times_iso8601_accepted(self, client): - """Test that valid ISO 8601 forecast_times are accepted""" - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_job" - mock_queue.enqueue = MagicMock(return_value=mock_job) - mock_redis.llen = MagicMock(return_value=0) - - # Test various valid ISO 8601 formats - valid_times = [ - ["2024-01-01T00:00:00"], - ["2024-01-01T00:00:00Z"], - ["2024-01-01T00:00:00+00:00"], - ["2024-01-01T00:00:00.123456"], - ["2024-01-01 00:00:00"], # Space separator also accepted - ["2024-01-01T00:00:00", "2024-01-02T00:00:00", "2024-01-03T00:00:00"], - ] - - for times in valid_times: - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": times, - "nsteps": 10, - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 200, f"Failed for times: {times}" - data = response.json() - assert data["status"] == "queued" - - def test_invalid_forecast_times_rejected(self, client): - """Test that invalid forecast_times formats are rejected""" - test_client, _, _ = client - - # Test various invalid formats - invalid_times = [ - (["2024-01-01"], "date without time"), - (["01/01/2024"], "wrong date format"), - (["not-a-date"], "completely invalid"), - (["2024-13-01T00:00:00"], "invalid month"), - (["2024-01-32T00:00:00"], "invalid day"), - (["2024-01-01T25:00:00"], "invalid hour"), - ] - - for times, description in invalid_times: - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": times, - "nsteps": 10, - "model_type": "fcn", - } - }, - ) - - assert ( - response.status_code == 422 - ), f"Expected 422 for {description}, got {response.status_code}" - data = response.json() - assert ( - "Invalid parameters" in data["detail"] - ), f"Expected validation error for {description}" - assert ( - "forecast_times" in data["detail"] - ), f"Expected forecast_times in error for {description}" - - def test_forecast_times_mixed_valid_invalid_rejected(self, client): - """Test that forecast_times with one invalid value fails""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": [ - "2024-01-01T00:00:00", # Valid - "not-a-date", # Invalid - "2024-01-03T00:00:00", # Valid - ], - "nsteps": 10, - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "forecast_times" in data["detail"] - - def test_forecast_times_wrong_type_rejected(self, client): - """Test that forecast_times with non-string values are rejected""" - test_client, _, _ = client - - # Test with integer - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": [12345], # Not a string - "nsteps": 10, - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "forecast_times" in data["detail"] - - -class TestWorkflowExecutionRequest: - """Tests for WorkflowExecutionRequest validation""" - - def test_valid_request_with_parameters(self): - """Test that valid request with parameters field is accepted""" - from api_server.main import WorkflowExecutionRequest - - # Valid request - request = WorkflowExecutionRequest( - parameters={"field1": "value1", "field2": 123} - ) - assert request.parameters == {"field1": "value1", "field2": 123} - - def test_valid_request_with_empty_parameters(self): - """Test that request with empty parameters dict is accepted""" - from api_server.main import WorkflowExecutionRequest - - # Empty parameters is valid - request = WorkflowExecutionRequest(parameters={}) - assert request.parameters == {} - - def test_valid_request_without_parameters_uses_default(self): - """Test that request without parameters field uses default empty dict""" - from api_server.main import WorkflowExecutionRequest - - # No parameters provided - should use default - request = WorkflowExecutionRequest() - assert request.parameters == {} - - def test_invalid_request_with_extra_fields(self): - """Test that request with unknown fields is rejected""" - from api_server.main import WorkflowExecutionRequest - from pydantic import ValidationError - - # Request with unknown field should be rejected - with pytest.raises(ValidationError, match="Extra inputs are not permitted"): - WorkflowExecutionRequest( - parameters={"valid": "param"}, unknown_field="should_fail" - ) - - def test_invalid_request_with_multiple_extra_fields(self): - """Test that request with multiple unknown fields is rejected""" - from api_server.main import WorkflowExecutionRequest - from pydantic import ValidationError - - # Multiple unknown fields - with pytest.raises(ValidationError, match="Extra inputs are not permitted"): - WorkflowExecutionRequest( - parameters={"valid": "param"}, - extra1="bad", - extra2="also_bad", - extra3="still_bad", - ) - - def test_invalid_request_flat_structure(self): - """Test that flat request structure (without parameters wrapper) is rejected""" - from api_server.main import WorkflowExecutionRequest - from pydantic import ValidationError - - # Flat structure - fields that should be inside 'parameters' - with pytest.raises(ValidationError, match="Extra inputs are not permitted"): - WorkflowExecutionRequest( - forecast_times=["2024-01-01"], - nsteps=6, - model_type="fcn", - ) - - def test_invalid_request_mixed_structure(self): - """Test that mixed structure (parameters + extra fields) is rejected""" - from api_server.main import WorkflowExecutionRequest - from pydantic import ValidationError - - # Mixed: valid parameters field + invalid extra fields - with pytest.raises(ValidationError, match="Extra inputs are not permitted"): - WorkflowExecutionRequest( - parameters={"forecast_times": ["2024-01-01"], "nsteps": 6}, - workflow_type="deterministic", # This should not be at this level - device="auto", # This should not be at this level - ) - - def test_parameters_field_type_validation(self): - """Test that parameters field must be a dict""" - from api_server.main import WorkflowExecutionRequest - from pydantic import ValidationError - - # parameters must be a dict, not a string - with pytest.raises(ValidationError): - WorkflowExecutionRequest(parameters="not_a_dict") - - # parameters must be a dict, not a list - with pytest.raises(ValidationError): - WorkflowExecutionRequest(parameters=["not", "a", "dict"]) - - # parameters must be a dict, not None - with pytest.raises(ValidationError): - WorkflowExecutionRequest(parameters=None) - - def test_valid_request_serialization(self): - """Test that valid request can be serialized to dict""" - from api_server.main import WorkflowExecutionRequest - - request = WorkflowExecutionRequest( - parameters={"forecast_times": ["2024-01-01"], "nsteps": 10} - ) - - # Serialize to dict - data = request.model_dump() - assert isinstance(data, dict) - assert data == {"parameters": {"forecast_times": ["2024-01-01"], "nsteps": 10}} - - def test_valid_request_with_nested_parameters(self): - """Test that request with nested parameter structures is accepted""" - from api_server.main import WorkflowExecutionRequest - - # Complex nested parameters - request = WorkflowExecutionRequest( - parameters={ - "forecast_times": ["2024-01-01", "2024-01-02"], - "nsteps": 10, - "config": { - "model": {"type": "fcn", "version": "1.0"}, - "data": {"source": "gfs", "cache": True}, - }, - "options": ["opt1", "opt2", "opt3"], - } - ) - - assert request.parameters["nsteps"] == 10 - assert request.parameters["config"]["model"]["type"] == "fcn" - assert len(request.parameters["options"]) == 3 - - -class TestQueuePosition: - """Tests for queue position functionality""" - - @pytest.fixture - def mock_queue(self): - """Create a mock RQ queue with job IDs""" - from unittest.mock import MagicMock - - queue = MagicMock() - queue.job_ids = [ - "workflow1_exec_001", - "workflow2_exec_002", - "workflow1_exec_003", - "workflow3_exec_004", - ] - return queue - - def test_get_queue_position_first_in_queue(self, mock_queue): - """Test getting position for first job in queue""" - from unittest.mock import patch - - from api_server.main import get_queue_position - - with patch("api_server.main.inference_queue", mock_queue): - position = get_queue_position("workflow1_exec_001") - assert position == 0 # 0-indexed: first job is at position 0 - - def test_get_queue_position_middle_of_queue(self, mock_queue): - """Test getting position for job in middle of queue""" - from unittest.mock import patch - - from api_server.main import get_queue_position - - with patch("api_server.main.inference_queue", mock_queue): - position = get_queue_position("workflow1_exec_003") - assert position == 2 # 0-indexed: third job is at position 2 - - def test_get_queue_position_last_in_queue(self, mock_queue): - """Test getting position for last job in queue""" - from unittest.mock import patch - - from api_server.main import get_queue_position - - with patch("api_server.main.inference_queue", mock_queue): - position = get_queue_position("workflow3_exec_004") - assert position == 3 # 0-indexed: fourth job is at position 3 - - def test_get_queue_position_not_in_queue(self, mock_queue): - """Test getting position for job not in queue returns None""" - from unittest.mock import patch - - from api_server.main import get_queue_position - - with patch("api_server.main.inference_queue", mock_queue): - position = get_queue_position("nonexistent_job") - assert position is None - - def test_get_queue_position_no_queue(self): - """Test getting position when queue is not initialized returns None""" - from unittest.mock import patch - - from api_server.main import get_queue_position - - with patch("api_server.main.inference_queue", None): - position = get_queue_position("any_job") - assert position is None - - def test_get_queue_position_empty_queue(self): - """Test getting position when queue is empty""" - from unittest.mock import MagicMock, patch - - from api_server.main import get_queue_position - - empty_queue = MagicMock() - empty_queue.job_ids = [] - - with patch("api_server.main.inference_queue", empty_queue): - position = get_queue_position("any_job") - assert position is None - - def test_get_queue_position_exception_handling(self): - """Test that exceptions in get_queue_position are handled gracefully""" - from unittest.mock import MagicMock, PropertyMock, patch - - from api_server.main import get_queue_position - - queue_with_error = MagicMock() - type(queue_with_error).job_ids = PropertyMock( - side_effect=Exception("Queue connection error") - ) - - with patch("api_server.main.inference_queue", queue_with_error): - position = get_queue_position("any_job") - assert position is None - - -class TestWorkflowExecutionWithQueuePosition: - """Tests for workflow execution endpoint with queue position""" - - @pytest.fixture - def mock_workflow_class(self): - """Create a mock workflow class""" - from api_server.workflow import Workflow, WorkflowParameters - - class TestWorkflowParameters(WorkflowParameters): - """Test parameters""" - - test_param: str = "default" - - class TestWorkflow(Workflow): - name = "test_workflow" - description = "Test workflow" - Parameters = TestWorkflowParameters - - @classmethod - def validate_parameters(cls, parameters): - return TestWorkflowParameters.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "success"} - - return TestWorkflow - - @pytest.fixture - def client(self, mock_workflow_class): - """Create test client with mocked dependencies""" - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue") as mock_queue_class, - patch("api_server.workflow.register_all_workflows"), - ): - # Setup mock async Redis - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_instance.get = AsyncMock(return_value=None) - mock_async_redis.return_value = mock_async_instance - - # Setup mock sync Redis - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_instance.setex = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - - # Setup mock queue - mock_queue = MagicMock() - mock_queue.__len__ = MagicMock(return_value=0) - mock_queue.job_ids = [] - mock_queue_class.return_value = mock_queue - - from api_server.main import app - from api_server.workflow import workflow_registry - - # Register the test workflow - workflow_registry._workflows["test_workflow"] = mock_workflow_class - - with TestClient(app, raise_server_exceptions=False) as client: - yield client, mock_queue, mock_sync_instance - - # Cleanup - if "test_workflow" in workflow_registry._workflows: - del workflow_registry._workflows["test_workflow"] - - def test_execute_workflow_includes_queue_position(self, client): - """Test that POST /v1/infer/{workflow_name} includes queue position""" - from unittest.mock import patch - - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_workflow_exec_123" - - # Before enqueue: queue size is 0 - mock_queue.__len__ = MagicMock(return_value=0) - mock_queue.enqueue = MagicMock(return_value=mock_job) - - # Redis llen returns 0 (the queue size before the job is fully committed) - mock_redis.llen = MagicMock(return_value=0) - - # Patch the inference_queue at module level - with patch("api_server.main.inference_queue", mock_queue): - response = test_client.post( - "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} - ) - - assert response.status_code == 200 - data = response.json() - - # Check that position is included in response - assert "position" in data - assert data["position"] == 0 # Redis llen returns 0 (first job, position 0) - assert data["status"] == "queued" - - def test_execute_workflow_position_with_existing_jobs(self, client): - """Test that position is correct when there are existing jobs in queue""" - from unittest.mock import patch - - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_workflow_exec_456" - - # Before enqueue: queue has 2 existing jobs - mock_queue.__len__ = MagicMock(return_value=2) - mock_queue.enqueue = MagicMock(return_value=mock_job) - - # Redis llen returns 2 (the queue size before the job is fully committed) - mock_redis.llen = MagicMock(return_value=2) - - # Patch the inference_queue at module level - with patch("api_server.main.inference_queue", mock_queue): - response = test_client.post( - "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} - ) - - assert response.status_code == 200 - data = response.json() - - # Check that position is correct - assert "position" in data - assert data["position"] == 2 # Redis llen returns 2 (third job, position 2) - assert data["status"] == "queued" - - def test_execute_workflow_position_with_five_existing_jobs(self, client): - """Test that position is correct with multiple existing jobs in queue""" - from unittest.mock import patch - - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_workflow_exec_789" - mock_queue.enqueue = MagicMock(return_value=mock_job) - - # Before enqueue: queue has 5 existing jobs - mock_queue.__len__ = MagicMock(return_value=5) - - # Redis llen returns 5 (the queue size before the job is fully committed) - mock_redis.llen = MagicMock(return_value=5) - - # Patch the inference_queue at module level - with patch("api_server.main.inference_queue", mock_queue): - response = test_client.post( - "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} - ) - - assert response.status_code == 200 - data = response.json() - - # Check that position is correct - assert "position" in data - assert data["position"] == 5 # Redis llen returns 5 (sixth job, position 5) - assert data["status"] == "queued" - - def test_get_workflow_status_includes_position_when_queued(self, client): - """Test that GET /v1/infer/{workflow_name}/{execution_id}/status includes position when status is queued""" - test_client, mock_queue, mock_redis = client - - # Setup queue with multiple jobs - execution_id = "exec_456" - job_id = f"test_workflow_{execution_id}" - - # Set up mock queue job_ids to include our job at position 1 - mock_queue.job_ids = ["other_job_1", job_id, "other_job_2"] - - # Mock Redis response for queued execution - import json - from datetime import datetime, timezone - from unittest.mock import patch - - execution_data = { - "workflow_name": "test_workflow", - "execution_id": execution_id, - "status": "queued", - "start_time": datetime.now(timezone.utc).isoformat(), - "metadata": {}, - } - mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) - - # Patch the inference_queue for get_queue_position to use - with patch("api_server.main.inference_queue", mock_queue): - response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") - - assert response.status_code == 200 - data = response.json() - - # Check that position is included and correct - assert "position" in data - assert data["position"] == 1 # Second in queue (0-indexed, so position 1) - assert data["status"] == "queued" - - def test_get_workflow_status_queued_but_not_in_queue(self, client): - """Test race condition: status is QUEUED but job not in queue (worker picked it up)""" - test_client, mock_queue, mock_redis = client - - execution_id = "exec_race" - - # Set up mock queue with empty job_ids (job already picked up by worker) - mock_queue.job_ids = [] - - # Mock Redis response with QUEUED status (worker hasn't updated it yet) - import json - from datetime import datetime, timezone - from unittest.mock import patch - - execution_data = { - "workflow_name": "test_workflow", - "execution_id": execution_id, - "status": "queued", # Still queued in Redis - "start_time": datetime.now(timezone.utc).isoformat(), - "metadata": {}, - } - mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) - - # Patch the inference_queue for get_queue_position to use - with patch("api_server.main.inference_queue", mock_queue): - response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") - - assert response.status_code == 200 - data = response.json() - - # Should be treated as RUNNING since job is not in queue - assert data["status"] == "running" - # Position should be None for running status - if "position" in data: - assert data["position"] is None - - def test_get_workflow_status_no_position_when_running(self, client): - """Test that position is None when workflow is running (not queued)""" - test_client, mock_queue, mock_redis = client - - execution_id = "exec_789" - - # Mock Redis response for running execution - import json - from datetime import datetime, timezone - - execution_data = { - "workflow_name": "test_workflow", - "execution_id": execution_id, - "status": "running", - "start_time": datetime.now(timezone.utc).isoformat(), - "metadata": {}, - } - mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) - - response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") - - assert response.status_code == 200 - data = response.json() - - # Position should be None or not included for non-queued status - # (The model allows None, so it could be None or absent) - if "position" in data: - assert data["position"] is None - assert data["status"] == "running" - - def test_get_workflow_status_no_position_when_completed(self, client): - """Test that position is None when workflow is completed""" - test_client, mock_queue, mock_redis = client - - execution_id = "exec_999" - - # Mock Redis response for completed execution - import json - from datetime import datetime, timezone - - execution_data = { - "workflow_name": "test_workflow", - "execution_id": execution_id, - "status": "completed", - "start_time": datetime.now(timezone.utc).isoformat(), - "end_time": datetime.now(timezone.utc).isoformat(), - "metadata": {}, - } - mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) - - response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") - - assert response.status_code == 200 - data = response.json() - - # Position should be None for completed workflows - if "position" in data: - assert data["position"] is None - assert data["status"] == "completed" diff --git a/test/utils/test_coords.py b/test/utils/test_coords.py index 4d8134225..8a526303c 100644 --- a/test/utils/test_coords.py +++ b/test/utils/test_coords.py @@ -26,7 +26,12 @@ handshake_dim, handshake_size, ) -from earth2studio.utils.coords import map_coords, split_coords +from earth2studio.utils.coords import ( + cat_coords, + map_coords, + split_coords, + tile_coords, +) @pytest.mark.parametrize( @@ -300,15 +305,26 @@ def test_convert_multidim_to_singledim_error(): def test_handshake_coords(): """Test handshake_coords function""" - coords1 = OrderedDict([("lat", np.array([1, 2, 3]))]) - coords2 = OrderedDict([("lat", np.array([1, 2, 3]))]) + coords1 = OrderedDict( + [ + ("lat", np.array([1, 2, 3])), + ("lon", np.array([4, 5, 6])), + ] + ) + coords2 = OrderedDict( + [ + ("lat", np.array([1, 2, 3])), + ("lon", np.array([4, 5, 6])), + ] + ) # Should pass handshake_coords(coords1, coords2, "lat") + handshake_coords(coords1, coords2, ["lat", "lon"]) # Test missing dimension in input coords with pytest.raises(KeyError, match="not found in input coordinates"): - handshake_coords(coords1, coords2, "lon") + handshake_coords(coords1, coords2, "variable") # Test missing dimension in target coords coords2 = OrderedDict([("lon", np.array([1, 2, 3]))]) @@ -420,3 +436,425 @@ def test_convert_multidim_to_singledim_additional(): ValueError, match="Assumed that if an n-dimensional coordinate exists" ): convert_multidim_to_singledim(coords) + + +def test_tile_coords(): + """Test tiling function for expanding dimensions""" + + x = torch.randn(2, 721, 1440) + coords = OrderedDict( + { + "variable": np.array(["z", "lsm"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + target_coords = OrderedDict( + { + "ensemble": np.array([0, 1, 2]), + "time": np.array([1, 2, 3, 4]), + "lead_time": np.array([0, 1, 2, 3, 4]), + "variable": np.array(["z", "lsm"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + result, result_coords = tile_coords(x, coords, target_coords) + assert result.shape == (3, 4, 5, 2, 721, 1440) + assert "variable" in result_coords + assert "time" in result_coords + + +def test_tile_coords_ignores_common_dims(): + x = torch.randn(2, 721, 1440) + coords = OrderedDict( + { + "variable": np.array(["z", "lsm"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + # target_coords has "variable", "lat", "lon" which should be ignored + # Only "ensemble", "time", "lead_time" should be used for tiling + target_coords = OrderedDict( + { + "ensemble": np.array([0, 1, 2]), + "time": np.array([1, 2, 3, 4]), + "lead_time": np.array([0, 1, 2, 3, 4]), + "variable": np.array(["different", "values"]), # Should be ignored + "lat": np.linspace(0, 90, 100), # Should be ignored + "lon": np.linspace(0, 180, 200), # Should be ignored + } + ) + + result, result_coords = tile_coords(x, coords, target_coords) + # Should tile to (3, 4, 5, 2, 721, 1440) - leading dims from target_coords (not in coords) + assert result.shape == (3, 4, 5, 2, 721, 1440) + # Should use coords values, not target_coords values for common dims + assert np.array_equal(result_coords["variable"], coords["variable"]) + assert np.array_equal(result_coords["lat"], coords["lat"]) + assert np.array_equal(result_coords["lon"], coords["lon"]) + + +def test_tile_coords_edge_cases(): + # Test: no leading dimensions (all target_coords dims exist in coords) + x = torch.randn(2, 3, 4) + coords = OrderedDict( + { + "a": np.array([0, 1]), + "b": np.array([0, 1, 2]), + "c": np.array([0, 1, 2, 3]), + } + ) + target_coords = OrderedDict( + { + "a": np.array([0, 1]), + "b": np.array([0, 1, 2]), + "c": np.array([0, 1, 2, 3]), + } + ) + result, result_coords = tile_coords(x, coords, target_coords) + assert result.shape == x.shape + assert result_coords == coords + + # Test: common dimensions in target_coords are ignored (uses coords values) + x = torch.randn(2, 721, 1440) + coords = OrderedDict( + { + "variable": np.array(["z", "lsm"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + target_coords = OrderedDict( + { + "ensemble": np.array([0, 1, 2]), + "time": np.array([1, 2, 3, 4]), + "variable": np.array(["different"]), # Should be ignored + "lat": np.linspace(0, 90, 100), # Should be ignored + "lon": np.linspace(0, 180, 200), # Should be ignored + } + ) + # Only "ensemble" and "time" from target_coords should be used for tiling + result, result_coords = tile_coords(x, coords, target_coords) + assert result.shape == (3, 4, 2, 721, 1440) + assert np.array_equal(result_coords["variable"], coords["variable"]) + assert np.array_equal(result_coords["lat"], coords["lat"]) + assert np.array_equal(result_coords["lon"], coords["lon"]) + + # Test: single dimension x + x = torch.randn(721) + coords = OrderedDict({"lat": np.linspace(90, -90, 721)}) + target_coords = OrderedDict( + { + "ensemble": np.array([0, 1, 2]), + "time": np.array([1, 2, 3, 4]), + "lat": np.linspace(0, 90, 100), # Should be ignored + } + ) + result, result_coords = tile_coords(x, coords, target_coords) + assert result.shape == (3, 4, 721) + assert "lat" in result_coords + assert np.array_equal(result_coords["lat"], coords["lat"]) + + # Test: empty tensors (0-sized dimensions) + x = torch.randn(0, 721, 1440) + coords = OrderedDict( + { + "variable": np.array([]), # Empty array + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + target_coords = OrderedDict( + { + "ensemble": np.array([0, 1, 2]), + "time": np.array([1, 2, 3, 4]), + "variable": np.array([1, 2, 3]), # Should be ignored + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + result, result_coords = tile_coords(x, coords, target_coords) + assert result.shape == (3, 4, 0, 721, 1440) + assert len(result_coords["variable"]) == 0 + + # Test: mismatched coordinate values (common dims use coords values) + x = torch.randn(2, 10) + coords = OrderedDict( + { + "a": np.array([0, 1]), + "b": np.arange(10), + } + ) + target_coords = OrderedDict( + { + "c": np.array([0, 1, 2]), + "a": np.array([10, 20]), # Should be ignored + "b": np.arange(10, 20), # Should be ignored + } + ) + result, result_coords = tile_coords(x, coords, target_coords) + assert result.shape == (3, 2, 10) + assert np.array_equal(result_coords["a"], coords["a"]) + assert np.array_equal(result_coords["b"], coords["b"]) + + +def test_tile_coords_validation(): + """Test that tile_coords validates new dims lead common dims""" + x = torch.randn(2, 10) + coords = OrderedDict( + { + "a": np.array([0, 1]), + "b": np.arange(10), + } + ) + + # Valid: new dims before common dims + target_coords = OrderedDict( + { + "c": np.array([0, 1, 2]), + "a": np.array([10, 20]), + "b": np.arange(10, 20), + } + ) + result, _ = tile_coords(x, coords, target_coords) + assert result.shape == (3, 2, 10) + + # Invalid: new dim after common dim + target_coords_bad = OrderedDict( + { + "a": np.array([10, 20]), + "c": np.array([0, 1, 2]), # New dim after common dim + "b": np.arange(10, 20), + } + ) + with pytest.raises(ValueError): + tile_coords(x, coords, target_coords_bad) + + +def test_cat_coords(): + xx = torch.randn(1, 2, 721, 1440) + cox = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["u10m", "v10m"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + yy = torch.randn(1, 1, 721, 1440) + coy = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["msl"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + result, result_coords = cat_coords((xx, yy), (cox, coy), dim="variable") + + assert result.shape == (1, 3, 721, 1440) + assert len(result_coords["variable"]) == 3 + assert np.array_equal(result_coords["variable"], ["u10m", "v10m", "msl"]) + + +def test_cat_coords_different_dims(): + """Test concatenation along different dimensions""" + # Test concatenation along "time" dimension + xx = torch.randn(2, 3, 721, 1440) + cox = OrderedDict( + { + "time": np.array([0, 1]), + "variable": np.array(["u10m", "v10m", "msl"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + yy = torch.randn(1, 3, 721, 1440) + coy = OrderedDict( + { + "time": np.array([2]), + "variable": np.array(["u10m", "v10m", "msl"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + result, result_coords = cat_coords((xx, yy), (cox, coy), dim="time") + assert result.shape == (3, 3, 721, 1440) + assert len(result_coords["time"]) == 3 + assert np.array_equal(result_coords["time"], [0, 1, 2]) + + # Test concatenation along "batch" dimension + xx = torch.randn(2, 3, 721, 1440) + cox = OrderedDict( + { + "batch": np.array([0, 1]), + "variable": np.array(["u10m", "v10m", "msl"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + yy = torch.randn(1, 3, 721, 1440) + coy = OrderedDict( + { + "batch": np.array([2]), + "variable": np.array(["u10m", "v10m", "msl"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + result, result_coords = cat_coords((xx, yy), (cox, coy), dim="batch") + assert result.shape == (3, 3, 721, 1440) + assert len(result_coords["batch"]) == 3 + assert np.array_equal(result_coords["batch"], [0, 1, 2]) + + +def test_cat_coords_multiple(): + xx = torch.randn(1, 1, 721, 1440) + cox = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["u10m"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + yy = torch.randn(1, 1, 721, 1440) + coy = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["v10m"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + zz = torch.randn(1, 1, 721, 1440) + coz = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["msl"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + result, result_coords = cat_coords((xx, yy, zz), (cox, coy, coz), dim="variable") + assert result.shape == (1, 3, 721, 1440) + assert len(result_coords["variable"]) == 3 + assert np.array_equal(result_coords["variable"], ["u10m", "v10m", "msl"]) + + +def test_cat_coords_single(): + """Test concatenation with a single tensor (should return as-is)""" + xx = torch.randn(1, 2, 721, 1440) + cox = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["u10m", "v10m"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + result, result_coords = cat_coords((xx,), (cox,), dim="variable") + assert torch.equal(result, xx) # Should return the same tensor + for dim in cox.keys(): + assert np.all(result_coords[dim] == cox[dim]) + + +def test_cat_coords_errors(): + """Test error cases for cat_coords""" + # Test length mismatch + xx = torch.randn(1, 2, 721, 1440) + cox = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["u10m", "v10m"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + yy = torch.randn(1, 1, 721, 1440) + coy = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["msl"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + with pytest.raises(ValueError): + cat_coords((xx, yy), (cox,), dim="variable") + + # Test empty input + with pytest.raises(ValueError): + cat_coords((), (), dim="variable") + + xx = torch.randn(1, 2, 721, 1440) + cox = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["u10m", "v10m"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + yy = torch.randn(1, 1, 721, 1440) + coy = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["msl"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + + # Test missing dimension in first coords (handshake_dim on cox) + with pytest.raises(KeyError): + cat_coords((xx, yy), (cox, coy), dim="nonexistent") + + # Test cox has extra dim (key-equality check catches mismatched dimension sets) + cox_with_extra = cox.copy() + cox_with_extra["extra_dim"] = np.array([0]) + xx_extra = torch.randn(1, 2, 1, 721, 1440) + with pytest.raises(KeyError): + cat_coords((xx_extra, yy), (cox_with_extra, coy), dim="extra_dim") + + # Test mismatched non-cat coords (handshake_coords catches shape mismatch) + yy_bad = torch.randn(1, 1, 361, 1440) + coy_bad = OrderedDict( + { + "time": np.array([0]), + "variable": np.array(["msl"]), + "lat": np.linspace(90, -90, 361), + "lon": np.linspace(0, 360, 1440), + } + ) + with pytest.raises(ValueError): + cat_coords((xx, yy_bad), (cox, coy_bad), dim="variable") + + # Test mismatched dimension names + yy_bad = torch.randn(1, 1, 361, 1440) + coy_bad = OrderedDict( + { + "lead_time": np.array([0]), + "variable": np.array(["msl"]), + "lat": np.linspace(90, -90, 721), + "lon": np.linspace(0, 360, 1440), + } + ) + with pytest.raises(ValueError): + cat_coords((xx, yy_bad), (cox, coy_bad), dim="variable") diff --git a/tox-full.ini b/tox-full.ini index a2c79803d..58b3a0c4f 100644 --- a/tox-full.ini +++ b/tox-full.ini @@ -47,6 +47,8 @@ package = editable basepython = python3.12 passenv = EARTH2STUDIO_CACHE + EARTH2STUDIO_DATA_CACHE + EARTH2STUDIO_MODEL_CACHE EARTH2STUDIO_PACKAGE_TIMEOUT TESTMON_DATAFILE UV_CACHE_DIR diff --git a/tox.ini b/tox.ini index f3ae05d6b..98e5ef839 100644 --- a/tox.ini +++ b/tox.ini @@ -9,6 +9,8 @@ envlist = test-stats test-px-models test-dx-models + test-da-models + test-px-models-ace2 [testenv] # Base configuration for all environments @@ -18,6 +20,8 @@ package = editable basepython = python3.12 passenv = EARTH2STUDIO_CACHE + EARTH2STUDIO_DATA_CACHE + EARTH2STUDIO_MODEL_CACHE EARTH2STUDIO_PACKAGE_TIMEOUT TESTMON_DATAFILE UV_CACHE_DIR @@ -52,11 +56,7 @@ description = Run tests for the serve extras = serve commands = pytest {posargs:-s --cov --cov-append --slow --testmon} \ - test/serve/test_config.py \ - test/serve/test_cleanup_daemon.py \ - test/serve/test_cpu_worker.py \ - test/serve/test_main.py \ - test/serve/test_workflow.py + test/serve [testenv:test-data] runner = uv-venv-lock-runner @@ -100,6 +100,21 @@ commands = pytest {posargs:-s --cov --cov-append --slow --package --testmon} \ test/models/dx +[testenv:test-da-models] +runner = uv-venv-lock-runner +description = Run tests for da models using all env +extras = all +commands = + pytest {posargs:-s --cov --cov-append --slow --package --testmon} \ + test/models/da + # ===================== # Conflict environments # ===================== +[testenv:test-px-models-ace2] +runner = uv-venv-lock-runner +description = Run tests for px models with conflicts +extras = ace2 +commands = + pytest {posargs:-s --cov --cov-append --slow --package --testmon} \ + test/models/px/test_ace2.py diff --git a/uv.lock b/uv.lock index e83b710f9..2c59325f9 100644 --- a/uv.lock +++ b/uv.lock @@ -1,5 +1,5 @@ version = 1 -revision = 1 +revision = 3 requires-python = ">=3.11" resolution-markers 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= { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, { name = "ruamel-yaml" }, { name = "scikit-image" }, { name = "scipy" }, { name = "timm" }, - { name = "torch-harmonics" }, + { name = "torch-harmonics", version = "0.8.0", source = { registry = "https://pypi.org/simple" }, marker = "extra == 'extra-12-earth2studio-ace2'" }, + { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" }, marker = "extra == 'extra-12-earth2studio-atlas' or extra == 'extra-12-earth2studio-fcn3' or extra == 'extra-12-earth2studio-perturbation' or extra == 'extra-12-earth2studio-sfno' or extra != 'extra-12-earth2studio-ace2'" }, ] atlas = [ { name = "einops" }, { name = "natten" }, { name = "nvidia-physicsnemo" }, - { name = "pytz" }, { name = "timm" }, - { name = "torch-harmonics" }, + { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" } }, ] aurora = [ { name = "microsoft-aurora" }, ] cbottle = [ - { name = "cbottle", marker = "python_full_version >= '3.12'" }, + { name = "cbottle", marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, { name = "earth2grid" }, ] corrdiff = [ { name = "einops" }, { name = "nvidia-physicsnemo" }, { name = "nvtx" }, - { name = "pytz" }, { name = "scipy" }, ] cyclone = [ @@ -1806,24 +1707,35 @@ da-interp = [ { name = "cudf-cu12" }, { name = "cupy-cuda12x" }, ] +da-stormcast = [ + { name = "cudf-cu12" }, + { name = "cupy-cuda12x" }, + { name = "einops" }, + { name = "nvidia-physicsnemo" }, + { name = "nvtx" }, + { name = "omegaconf" }, + { name = "pyproj" }, + { name = "scipy" }, +] data = [ { name = "cdsapi" }, { name = "cfgrib" }, { name = "eccodes" }, + { name = "eccodeslib" }, { name = "ecmwf-opendata" }, { name = "globus-sdk" }, { name = "httpx" }, - { name = "intake-esgf", version = "2025.10.22", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, - { name = "intake-esgf", version = "2026.1.26", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, + { name = "intake-esgf", version = "2025.10.22", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "intake-esgf", version = "2026.1.26", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, { name = "multi-storage-client", extra = ["boto3", "fsspec", "google-cloud-storage"] }, { name = "pandas" }, { name = "planetary-computer" }, { name = "pyproj" }, { name = "pystac-client" }, - { name = "rasterio", version = "1.4.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, - { name = "rasterio", version = "1.5.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, - { name = "rioxarray", version = "0.19.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, - { name = "rioxarray", version = "0.20.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, + { name = "rasterio", version = "1.4.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "rasterio", version = "1.5.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "rioxarray", version = "0.19.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "rioxarray", version = "0.20.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, { name = "scipy" }, ] dlesym = [ @@ -1831,24 +1743,20 @@ dlesym = [ { name = "hydra-core" }, { name = "nvidia-physicsnemo" }, { name = "omegaconf" }, - { name = "pytz" }, ] dlwp = [ { name = "importlib-metadata" }, { name = "nvidia-physicsnemo" }, - { name = "pytz" }, ] fcn = [ { name = "nvidia-physicsnemo" }, - { name = "pytz" }, ] fcn3 = [ { name = "makani" }, { name = "moviepy" }, - { name = "pytz" }, { name = "ruamel-yaml" }, { name = "scipy" }, - { name = "torch-harmonics" }, + { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" } }, ] fengwu = [ { name = "onnx" }, @@ -1869,7 +1777,6 @@ graphcast = [ ] interp-modafno = [ { name = "nvidia-physicsnemo" }, - { name = "pytz" }, ] pangu = [ { name = "onnx" }, @@ -1878,32 +1785,29 @@ pangu = [ ] perturbation = [ { name = "scipy" }, - { name = "torch-harmonics" }, + { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" } }, ] precip-afno = [ { name = "nvidia-physicsnemo" }, - { name = "pytz" }, ] precip-afno-v2 = [ { name = "nvidia-physicsnemo" }, - { name = "pytz" }, ] serve = [ { name = "aiofiles" }, - { name = "azure-identity" }, - { name = "azure-storage-blob" }, - { name = "cryptography" }, { name = "fastapi" }, { name = "hiredis" }, { name = "httpx" }, { name = "hydra-core" }, - { name = "multi-storage-client" }, { name = "prometheus-client" }, { name = "pydantic" }, { name = "python-dotenv" }, { name = "python-multipart" }, { name = "redis" }, + { name = "requests" }, { name = "rq" }, + { name = "types-redis" }, + { name = "urllib3" }, { name = "uvicorn", extra = ["standard"] }, ] sfno = [ @@ -1912,15 +1816,13 @@ sfno = [ { name = "pynvml" }, { name = "ruamel-yaml" }, { name = "scipy" }, - { name = "torch-harmonics" }, + { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" } }, ] solarradiation-afno = [ { name = "nvidia-physicsnemo" }, - { name = "pytz" }, ] statistics = [ { name = "nvidia-physicsnemo" }, - { name = "pytz" }, ] stormcast = [ { name = "einops" }, @@ -1928,7 +1830,6 @@ stormcast = [ { name = "nvtx" }, { name = "omegaconf" }, { name = "pyproj" }, - { name = "pytz" }, { name = "scipy" }, ] stormscope = [ @@ -1936,7 +1837,6 @@ stormscope = [ { name = "natten" }, { name = "nvidia-physicsnemo" }, { name = "nvtx" }, - { name = "pytz" }, { name = "scipy" }, ] utils = [ @@ -1945,7 +1845,6 @@ utils = [ ] windgust-afno = [ { name = "nvidia-physicsnemo" }, - { name = "pytz" }, ] [package.dev-dependencies] @@ -1971,6 +1870,7 @@ dev = [ { name = "ruff" }, { name = "tox" }, { name = "tox-uv" }, + { name = "types-redis" }, { name = "types-requests" }, ] docs = [ @@ -1978,12 +1878,12 @@ docs = [ { name = "jupytext" }, { name = "matplotlib" }, { name = "myst-parser" }, - { name = "pydata-sphinx-theme" }, + { name = "nvidia-sphinx-theme" }, { name = "scipy" }, - { name = "sphinx", version = "9.0.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, - { name = "sphinx", version = "9.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, - { name = "sphinx-autodoc-typehints", version = "3.6.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, - { name = "sphinx-autodoc-typehints", version = "3.7.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, + { name = "sphinx", version = "9.0.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "sphinx", version = "9.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "sphinx-autodoc-typehints", version = "3.6.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "sphinx-autodoc-typehints", version = "3.7.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, { name = "sphinx-design" }, { name = "sphinx-favicon" }, { name = "sphinx-gallery" }, @@ -1996,22 +1896,22 @@ requires-dist = [ { name = "anemoi-models", marker = "extra == 'aifs'", specifier = "==0.5.1" }, { name = "anemoi-models", marker = "extra == 'aifsens'", specifier = "==0.5.1" }, { name = "anemoi-models", marker = "extra == 'all'", specifier = "==0.5.1" }, - { name = "azure-identity", marker = "extra == 'serve'", specifier = ">=1.15.0" }, - { name = "azure-storage-blob", marker = "extra == 'serve'", specifier = ">=12.19.0" }, - { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'all'", git = "https://github.com/NVlabs/cBottle.git?rev=1d4435abe730d6b966e983633b466b345d60ac78" }, - { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'cbottle'", git = "https://github.com/NVlabs/cBottle.git?rev=1d4435abe730d6b966e983633b466b345d60ac78" }, + { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'all'", git = "https://github.com/NVlabs/cBottle.git?rev=8b8b358466e6b2f50d1779009790002ceb596e72" }, + { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'cbottle'", git = "https://github.com/NVlabs/cBottle.git?rev=8b8b358466e6b2f50d1779009790002ceb596e72" }, { name = "cdsapi", marker = "extra == 'all'", specifier = ">=0.7.5" }, { name = "cdsapi", marker = "extra == 'data'", specifier = ">=0.7.5" }, { name = "cfgrib", marker = "extra == 'all'", git = "https://github.com/NickGeneva/cfgrib.git?rev=6a9af3173d7050b5fa5d221755f97e6ecb8c3433" }, { name = "cfgrib", marker = "extra == 'data'", git = "https://github.com/NickGeneva/cfgrib.git?rev=6a9af3173d7050b5fa5d221755f97e6ecb8c3433" }, { name = "cftime" }, - { name = "cryptography", marker = "extra == 'serve'", specifier = ">=41.0.0" }, { name = "cucim-cu12", marker = "extra == 'all'", specifier = ">=25.4.0" }, { name = "cucim-cu12", marker = "extra == 'cyclone'", specifier = ">=25.4.0" }, + { name = "cudf-cu12", marker = "extra == 'all'", specifier = "==26.2.*" }, { name = "cudf-cu12", marker = "extra == 'da-interp'", specifier = "==26.2.*" }, + { name = "cudf-cu12", marker = "extra == 'da-stormcast'", specifier = "==26.2.*" }, { name = "cupy-cuda12x", marker = "extra == 'all'", specifier = "<14.0.0" }, { name = "cupy-cuda12x", marker = "extra == 'cyclone'", specifier = "<14.0.0" }, { name = "cupy-cuda12x", marker = "extra == 'da-interp'", specifier = "<14.0.0" }, + { name = "cupy-cuda12x", marker = "extra == 'da-stormcast'", specifier = "<14.0.0" }, { name = "dm-haiku", marker = "extra == 'all'", specifier = ">=0.0.14" }, { name = "dm-haiku", marker = "extra == 'graphcast'", specifier = ">=0.0.14" }, { name = "dm-tree", marker = "extra == 'all'", specifier = ">=0.1.9" }, @@ -2024,8 +1924,10 @@ requires-dist = [ { name = "earthkit-regrid", marker = "extra == 'aifs'", specifier = "==0.4.0" }, { name = "earthkit-regrid", marker = "extra == 'aifsens'", specifier = "==0.4.0" }, { name = "earthkit-regrid", marker = "extra == 'all'", specifier = "==0.4.0" }, - { name = "eccodes", marker = "extra == 'all'", specifier = ">=2.38.0" }, - { name = "eccodes", marker = "extra == 'data'", specifier = ">=2.38.0" }, + { name = "eccodes", marker = "extra == 'all'", specifier = ">=2.39.2" }, + { name = "eccodes", marker = "extra == 'data'", specifier = ">=2.39.2" }, + { name = "eccodeslib", marker = "extra == 'all'", specifier = ">=2.39.2" }, + { name = "eccodeslib", marker = "extra == 'data'", specifier = ">=2.39.2" }, { name = "ecmwf-opendata", marker = "extra == 'aifs'", specifier = ">=0.3.3" }, { name = "ecmwf-opendata", marker = "extra == 'aifsens'", specifier = ">=0.3.3" }, { name = "ecmwf-opendata", marker = "extra == 'all'", specifier = ">=0.3.3" }, @@ -2034,6 +1936,7 @@ requires-dist = [ { name = "einops", marker = "extra == 'all'", specifier = ">=0.8.1" }, { name = "einops", marker = "extra == 'atlas'" }, { name = "einops", marker = "extra == 'corrdiff'", specifier = ">=0.8.1" }, + { name = "einops", marker = "extra == 'da-stormcast'", specifier = ">=0.8.1" }, { name = "einops", marker = "extra == 'stormcast'", specifier = ">=0.8.1" }, { name = "fastapi", marker = "extra == 'serve'", specifier = ">=0.104.0" }, { name = "flash-attn", marker = "extra == 'aifs'" }, @@ -2042,7 +1945,6 @@ requires-dist = [ { name = "flax", marker = "extra == 'all'", specifier = ">=0.10.6" }, { name = "flax", marker = "extra == 'graphcast'", specifier = ">=0.10.6" }, { name = "fme", marker = "extra == 'ace2'", git = "https://github.com/ai2cm/ace.git?rev=e211cad3e1a5cff0fa84e8d2f0ee67042eff3d4d" }, - { name = "fme", marker = "extra == 'all'", git = "https://github.com/ai2cm/ace.git?rev=e211cad3e1a5cff0fa84e8d2f0ee67042eff3d4d" }, { name = "fsspec", specifier = ">=2024.2.0" }, { name = "gcsfs" }, { name = "globus-sdk", marker = "extra == 'all'", specifier = "<4.0.0" }, @@ -2051,8 +1953,6 @@ requires-dist = [ { name = "graphcast", marker = "extra == 'graphcast'", git = "https://github.com/google-deepmind/graphcast.git?rev=7077d40a36db6541e3ed72ccaed1c0d202fa6014" }, { name = "h5netcdf", specifier = ">=1.0.0" }, { name = "h5py", specifier = ">=3.2.0" }, - { name = "h5py", marker = "extra == 'ace2'", specifier = "<=3.14.0" }, - { name = "h5py", marker = "extra == 'all'", specifier = "<=3.14.0" }, { name = "hiredis", marker = "extra == 'serve'", specifier = ">=2.0.0" }, { name = "httpx", marker = "extra == 'all'", specifier = "==0.28.1" }, { name = 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.github/ISSUE_TEMPLATE/chore.yml | 59 - .../ISSUE_TEMPLATE/documentation_request.yml | 2 +- .github/ISSUE_TEMPLATE/feature_request.yml | 2 +- .gitlab-ci.yml | 64 +- CHANGELOG.md | 15 - Makefile | 2 +- docs/conf.py | 3 +- docs/modules/models.rst | 25 - docs/templates/dataassim.rst | 23 - docs/userguide/about/install.md | 62 +- earth2studio/data/__init__.py | 2 +- earth2studio/data/ufs.py | 7 + earth2studio/data/utils.py | 144 +- earth2studio/data/xr.py | 22 - earth2studio/io/zarr.py | 3 +- earth2studio/models/da/__init__.py | 18 - earth2studio/models/da/base.py | 188 - earth2studio/models/da/interp.py | 589 -- earth2studio/models/da/sda_stormcast.py | 914 -- earth2studio/models/da/utils.py | 167 - earth2studio/models/dx/cbottle_sr.py | 7 +- earth2studio/models/dx/corrdiff.py | 19 +- earth2studio/models/dx/corrdiff_cmip6.py | 16 +- earth2studio/models/nn/afno_ssrd.py | 2 +- earth2studio/models/nn/atlas.py | 17 +- earth2studio/models/nn/stormscope_util.py | 17 +- earth2studio/models/px/aifsens.py | 5 +- earth2studio/models/px/cbottle_video.py | 12 +- earth2studio/models/px/dlesym.py | 2 +- earth2studio/models/px/fcn.py | 24 +- .../models/px/graphcast_operational.py | 105 +- earth2studio/models/px/graphcast_small.py | 107 +- earth2studio/models/px/stormcast.py | 21 +- earth2studio/models/px/stormscope.py | 2 +- earth2studio/perturbation/gaussian.py | 18 +- earth2studio/perturbation/spherical.py | 12 +- earth2studio/run.py | 13 +- earth2studio/serve/client/__init__.py | 15 - earth2studio/serve/client/client.py | 550 - earth2studio/serve/client/e2client.py | 479 - earth2studio/serve/client/exceptions.py | 137 - earth2studio/serve/client/fsspec_utils.py | 302 - earth2studio/serve/client/models.py | 314 - earth2studio/utils/coords.py | 409 +- earth2studio/utils/time.py | 63 +- earth2studio/utils/type.py | 9 - examples/16_cbottle_super_resolution.py | 1 - examples/21_stormcast_sda.py | 488 - pyproject.toml | 95 +- recipes/hens/cfg/storm_bernd.yaml | 2 +- recipes/hens/src/hens_ensemble.py | 13 +- recipes/hens/src/hens_utilities.py | 50 + recipes/s2s/src/s2s_ensemble.py | 24 +- recipes/s2s/src/s2s_utilities.py | 51 +- serve/Dockerfile | 29 +- serve/client/README.md | 442 - serve/client/examples/basic_forecast.py | 116 - serve/client/examples/diagnostic_analysis.py | 155 - serve/client/examples/downscaled_forecast.py | 128 - serve/client/pyproject.toml | 88 - serve/client/requirements.txt | 14 - serve/{server => inferenceserver}/Makefile | 2 +- serve/{server => inferenceserver}/README.md | 4 +- .../README_earth2workflows.md | 2 +- .../README_object_storage.md | 0 .../README_workflows.md | 10 +- .../api_server/__init__.py} | 20 +- .../api_server}/cleanup_daemon.py | 84 +- .../api_server}/conf/config.yaml | 0 .../api_server}/conf/profiles.json | 0 .../api_server}/conf/workflows.yaml | 0 .../inferenceserver/api_server}/config.py | 39 +- .../inferenceserver/api_server}/cpu_worker.py | 25 +- .../api_server}/example_workflows/__init__.py | 0 .../deterministic_earth2_workflow.py | 2 +- .../example_workflows/deterministic_fcn.py | 2 +- .../deterministic_workflow.py | 2 +- .../example_workflows/diagnostic_workflow.py | 2 +- .../example_user_workflow.py | 2 +- .../example_workflows/foundry_fcn3.py | 2 +- .../foundry_fcn3_stormscope_goes.py | 20 +- .../stormcast_fcn3_workflow.py | 2 +- .../inferenceserver/api_server}/main.py | 261 +- .../api_server}/object_storage.py | 207 +- .../planetary_computer/pc_client.py | 0 ...plate-collection-fcn3-stormscope-goes.json | 0 .../template-collection-fcn3.json | 0 ...template-feature-fcn3-stormscope-goes.json | 0 .../template-feature-fcn3.json | 0 .../inferenceserver/api_server}/utils.py | 16 +- .../inferenceserver/api_server}/worker.py | 68 +- .../api_server/workflow}/__init__.py | 30 +- .../api_server/workflow}/e2workflow.py | 12 +- .../api_server/workflow}/workflow.py | 433 +- serve/{server => inferenceserver}/env.example | 0 .../{server => inferenceserver}/openapi.yaml | 0 .../requirements.txt | 4 - .../scripts/profile_workflow.sh | 0 .../scripts/redis.conf | 0 .../scripts/start_api_server.sh | 21 +- .../scripts/start_redis.sh | 0 .../scripts/startup.sh | 20 +- .../scripts/status.sh | 2 +- .../scripts/stop_api_server.sh | 2 +- .../scripts/stop_redis.sh | 0 .../{server => }/test/unit/test_e2workflow.py | 89 +- .../test/unit/test_e2workflow_params.py | 65 +- test/Dockerfile | 2 +- test/data/test_data_utils.py | 181 +- test/data/test_goes.py | 1 - test/models/da/test_da_interp.py | 359 - test/models/da/test_da_sda_stormcast.py | 537 - test/models/da/test_utils.py | 204 - test/models/px/test_ace2.py | 2 - test/models/px/test_aurora.py | 6 +- test/models/px/test_dxwrapper.py | 1 - test/models/px/test_fcn.py | 1 + test/models/px/test_graphcast.py | 27 +- test/serve/client/conftest.py | 135 - test/serve/client/test_client.py | 444 - test/serve/client/test_e2client.py | 663 -- test/serve/client/test_fsspec_utils.py | 378 - test/serve/conftest.py | 112 + test/serve/server/conftest.py | 88 - test/serve/server/test_cleanup_daemon.py | 775 -- test/serve/server/test_cpu_worker.py | 1403 --- test/serve/server/test_object_storage.py | 294 - test/serve/server/test_server_main.py | 2132 ---- test/serve/server/test_utils.py | 266 - test/serve/server/test_worker.py | 241 - test/serve/test_cleanup_daemon.py | 502 + test/serve/{server => }/test_config.py | 30 +- test/serve/test_cpu_worker.py | 743 ++ test/serve/test_main.py | 1213 +++ test/serve/{server => }/test_workflow.py | 45 +- test/utils/test_coords.py | 446 +- tox-full.ini | 2 - tox.ini | 25 +- uv.lock | 8991 ++++++++--------- 143 files changed, 7992 insertions(+), 20408 deletions(-) delete mode 100644 .github/ISSUE_TEMPLATE/chore.yml delete mode 100644 docs/templates/dataassim.rst delete mode 100644 earth2studio/models/da/__init__.py delete mode 100644 earth2studio/models/da/base.py delete mode 100644 earth2studio/models/da/interp.py delete mode 100644 earth2studio/models/da/sda_stormcast.py delete mode 100644 earth2studio/models/da/utils.py delete mode 100644 earth2studio/serve/client/__init__.py delete mode 100644 earth2studio/serve/client/client.py delete mode 100644 earth2studio/serve/client/e2client.py delete mode 100644 earth2studio/serve/client/exceptions.py delete mode 100644 earth2studio/serve/client/fsspec_utils.py delete mode 100644 earth2studio/serve/client/models.py delete mode 100644 examples/21_stormcast_sda.py delete mode 100644 serve/client/README.md delete mode 100644 serve/client/examples/basic_forecast.py delete mode 100644 serve/client/examples/diagnostic_analysis.py delete mode 100644 serve/client/examples/downscaled_forecast.py delete mode 100644 serve/client/pyproject.toml delete mode 100644 serve/client/requirements.txt rename serve/{server => inferenceserver}/Makefile (96%) rename serve/{server => inferenceserver}/README.md (99%) rename serve/{server => inferenceserver}/README_earth2workflows.md (98%) rename serve/{server => inferenceserver}/README_object_storage.md (100%) rename serve/{server => inferenceserver}/README_workflows.md (98%) rename serve/{client/Makefile => inferenceserver/api_server/__init__.py} (65%) rename {earth2studio/serve/server => serve/inferenceserver/api_server}/cleanup_daemon.py (82%) rename serve/{server => inferenceserver/api_server}/conf/config.yaml (100%) rename serve/{server => inferenceserver/api_server}/conf/profiles.json (100%) rename serve/{server => inferenceserver/api_server}/conf/workflows.yaml (100%) rename {earth2studio/serve/server => serve/inferenceserver/api_server}/config.py (95%) rename {earth2studio/serve/server => serve/inferenceserver/api_server}/cpu_worker.py (98%) rename serve/{server => inferenceserver/api_server}/example_workflows/__init__.py (100%) rename serve/{server => inferenceserver/api_server}/example_workflows/deterministic_earth2_workflow.py (96%) rename serve/{server => inferenceserver/api_server}/example_workflows/deterministic_fcn.py (99%) rename serve/{server => inferenceserver/api_server}/example_workflows/deterministic_workflow.py (99%) rename serve/{server => inferenceserver/api_server}/example_workflows/diagnostic_workflow.py (99%) rename serve/{server => inferenceserver/api_server}/example_workflows/example_user_workflow.py (99%) rename serve/{server => inferenceserver/api_server}/example_workflows/foundry_fcn3.py (100%) rename serve/{server => inferenceserver/api_server}/example_workflows/foundry_fcn3_stormscope_goes.py (97%) rename serve/{server => inferenceserver/api_server}/example_workflows/stormcast_fcn3_workflow.py (98%) rename {earth2studio/serve/server => serve/inferenceserver/api_server}/main.py (83%) rename {earth2studio/serve/server => serve/inferenceserver/api_server}/object_storage.py (90%) rename serve/{server => inferenceserver/api_server}/planetary_computer/pc_client.py (100%) rename serve/{server => inferenceserver/api_server}/planetary_computer/template-collection-fcn3-stormscope-goes.json (100%) rename serve/{server => inferenceserver/api_server}/planetary_computer/template-collection-fcn3.json (100%) rename serve/{server => inferenceserver/api_server}/planetary_computer/template-feature-fcn3-stormscope-goes.json (100%) rename serve/{server => inferenceserver/api_server}/planetary_computer/template-feature-fcn3.json (100%) rename {earth2studio/serve/server => serve/inferenceserver/api_server}/utils.py (94%) rename {earth2studio/serve/server => serve/inferenceserver/api_server}/worker.py (79%) rename {earth2studio/serve/server => serve/inferenceserver/api_server/workflow}/__init__.py (62%) rename {earth2studio/serve/server => serve/inferenceserver/api_server/workflow}/e2workflow.py (97%) rename {earth2studio/serve/server => serve/inferenceserver/api_server/workflow}/workflow.py (75%) rename serve/{server => inferenceserver}/env.example (100%) rename serve/{server => inferenceserver}/openapi.yaml (100%) rename serve/{server => inferenceserver}/requirements.txt (80%) rename serve/{server => inferenceserver}/scripts/profile_workflow.sh (100%) rename serve/{server => inferenceserver}/scripts/redis.conf (100%) rename serve/{server => inferenceserver}/scripts/start_api_server.sh (92%) rename serve/{server => inferenceserver}/scripts/start_redis.sh (100%) rename serve/{server => inferenceserver}/scripts/startup.sh (59%) rename serve/{server => inferenceserver}/scripts/status.sh (98%) rename serve/{server => inferenceserver}/scripts/stop_api_server.sh (96%) rename serve/{server => inferenceserver}/scripts/stop_redis.sh (100%) rename serve/{server => }/test/unit/test_e2workflow.py (82%) rename serve/{server => }/test/unit/test_e2workflow_params.py (86%) delete mode 100644 test/models/da/test_da_interp.py delete mode 100644 test/models/da/test_da_sda_stormcast.py delete mode 100644 test/models/da/test_utils.py delete mode 100644 test/serve/client/conftest.py delete mode 100644 test/serve/client/test_client.py delete mode 100644 test/serve/client/test_e2client.py delete mode 100644 test/serve/client/test_fsspec_utils.py create mode 100644 test/serve/conftest.py delete mode 100644 test/serve/server/conftest.py delete mode 100644 test/serve/server/test_cleanup_daemon.py delete mode 100644 test/serve/server/test_cpu_worker.py delete mode 100644 test/serve/server/test_object_storage.py delete mode 100644 test/serve/server/test_server_main.py delete mode 100644 test/serve/server/test_utils.py delete mode 100644 test/serve/server/test_worker.py create mode 100644 test/serve/test_cleanup_daemon.py rename test/serve/{server => }/test_config.py (96%) create mode 100644 test/serve/test_cpu_worker.py create mode 100644 test/serve/test_main.py rename test/serve/{server => }/test_workflow.py (97%) diff --git a/.cursor/rules/e2s-000-python-style-guide.mdc b/.cursor/rules/e2s-000-python-style-guide.mdc index d885e42a2..eb6f2cc04 100644 --- a/.cursor/rules/e2s-000-python-style-guide.mdc +++ b/.cursor/rules/e2s-000-python-style-guide.mdc @@ -75,17 +75,6 @@ This rule enforces the coding standards for Earth2Studio as defined in [style.md - Run `make lint` to check linting - Pre-commit hooks will automatically format and lint code -## Logging - -- Print statements should always be done via [loguru.logger](https://loguru.readthedocs.io/en/stable/api.html) or using [rich.console](https://rich.readthedocs.io/en/stable/reference/console.html) -- Generally, debugging messages should be placed behind a verbose toggle -- For tqdm progress bars be sure to use the following snippet at the top of the file to ensure progress bars are not disrupted - - ``` - logger.remove() - add(lambda msg: tqdm.write(msg, end=""), colorize=True) - ``` - ## Code Quality Reminders - Always include type hints for function parameters and return values @@ -93,4 +82,3 @@ This rule enforces the coding standards for Earth2Studio as defined in [style.md - Prefer modern Python 3.10+ type syntax (`list[str]`, `str | None`) - Ensure all files have the SPDX license header at the top - Follow black formatting (run `make format` if unsure) -- Do not use Python's native print() inside any files of the earth2studio folder diff --git a/.cursor/rules/e2s-002-api-documentation.mdc b/.cursor/rules/e2s-002-api-documentation.mdc index 65882aba3..707efdaf0 100644 --- a/.cursor/rules/e2s-002-api-documentation.mdc +++ b/.cursor/rules/e2s-002-api-documentation.mdc @@ -238,7 +238,6 @@ class CorrelatedSphericalGaussian: - Use periods for complete sentences, omit for "by default" phrases - Include `Raises` section when exceptions are raised - Include `Warning` section for classes with important warnings -- Do not put doc strings at the top of python files, only license headers should be above imports ## Tools diff --git a/.cursor/rules/e2s-009-prognostic-models.mdc b/.cursor/rules/e2s-009-prognostic-models.mdc index ee53da683..e71df34dd 100644 --- a/.cursor/rules/e2s-009-prognostic-models.mdc +++ b/.cursor/rules/e2s-009-prognostic-models.mdc @@ -328,8 +328,6 @@ def to(self, device: torch.device | str) -> PrognosticModel: - Call `super().to(device)` for PyTorch module - Move any custom buffers/parameters to device - Return `self` for chaining -- Torch.nn.Module parent class addresses this requirement most of the time -- Generally its good to have `self.register_buffer("device_buffer", torch.empty(0))` in their init to help track what the current device of the model is ## Data Operations on GPU diff --git a/.github/ISSUE_TEMPLATE/bug_report.yml b/.github/ISSUE_TEMPLATE/bug_report.yml index d74d80c90..0b2dfb9fe 100644 --- a/.github/ISSUE_TEMPLATE/bug_report.yml +++ b/.github/ISSUE_TEMPLATE/bug_report.yml @@ -1,4 +1,4 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: Copyright (c) 2024-2025 NVIDIA CORPORATION & AFFILIATES. # SPDX-FileCopyrightText: All rights reserved. # SPDX-License-Identifier: Apache-2.0 # diff --git a/.github/ISSUE_TEMPLATE/chore.yml b/.github/ISSUE_TEMPLATE/chore.yml deleted file mode 100644 index abe1d7022..000000000 --- a/.github/ISSUE_TEMPLATE/chore.yml +++ /dev/null @@ -1,59 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -name: Chore -description: Maintenance task, refactor, cleanup, or other housekeeping work -title: "🧹[CHORE]: " -labels: ["chore", "? - Needs Triage"] - -body: - - type: markdown - attributes: - value: | - Thanks for taking the time to help keep Earth2Studio clean and maintainable! - - By submitting this issue, you agree to follow our [Code of Conduct](https://github.com/NVIDIA/earth2studio/blob/main/CONTRIBUTING.md) - - You also confirm that you have searched the [open issues](https://github.com/NVIDIA/earth2studio/issues) and have found no duplicates for this request - - - type: dropdown - id: chore_type - attributes: - label: What type of chore is this? - options: - - Refactor - - Cleanup - - Dependency Update - - CI/CD - - Testing - - Other - validations: - required: true - - - type: dropdown - id: criticality - attributes: - label: How would you describe the priority of this chore - options: - - Critical (blocking other work) - - Medium - - Low (nice to have) - validations: - required: true - - - type: textarea - id: description - attributes: - label: Please provide a clear description of the chore. - description: Describe what needs to be done and why. Include relevant file paths, modules, or areas of the codebase affected. diff --git a/.github/ISSUE_TEMPLATE/documentation_request.yml b/.github/ISSUE_TEMPLATE/documentation_request.yml index 8b07bd757..38f540cdf 100644 --- a/.github/ISSUE_TEMPLATE/documentation_request.yml +++ b/.github/ISSUE_TEMPLATE/documentation_request.yml @@ -1,4 +1,4 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: Copyright (c) 2024-2025 NVIDIA CORPORATION & AFFILIATES. # SPDX-FileCopyrightText: All rights reserved. # SPDX-License-Identifier: Apache-2.0 # diff --git a/.github/ISSUE_TEMPLATE/feature_request.yml b/.github/ISSUE_TEMPLATE/feature_request.yml index 0c734d3a5..d6aa3f0a7 100644 --- a/.github/ISSUE_TEMPLATE/feature_request.yml +++ b/.github/ISSUE_TEMPLATE/feature_request.yml @@ -1,4 +1,4 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: Copyright (c) 2024-2025 NVIDIA CORPORATION & AFFILIATES. # SPDX-FileCopyrightText: All rights reserved. # SPDX-License-Identifier: Apache-2.0 # diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 096bcd82d..4baf555e6 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -122,6 +122,13 @@ test-data: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes + changes: + paths: + - earth2studio/data/**/* + - earth2studio/lexicon/**/* + - test/data/**/* + - test/lexicon/**/* + compare_to: 'refs/heads/main' - <<: *test_rule_non_github_with_changes changes: paths: @@ -148,6 +155,11 @@ test-perturb: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes + changes: + paths: + - earth2studio/perturbation/**/* + - test/perturbation/**/* + compare_to: 'refs/heads/main' - <<: *test_rule_non_github_with_changes changes: paths: @@ -170,6 +182,11 @@ test-stats: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes + changes: + paths: + - earth2studio/statistics/**/* + - test/statistics/**/* + compare_to: 'refs/heads/main' - <<: *test_rule_non_github_with_changes changes: paths: @@ -192,29 +209,11 @@ test-px-models: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes - - <<: *test_rule_non_github_with_changes - changes: - paths: - - earth2studio/models/px/**/* - - test/models/px/**/* - compare_to: 'refs/heads/main' - - <<: *test_rule_changes_only changes: paths: - earth2studio/models/px/**/* - test/models/px/**/* compare_to: 'refs/heads/main' - - <<: *test_rule_never - -# TODO: REMOVE, CONFLICT CURRENTLY -test-px-ace2: - extends: - - .test:base - variables: - TOX_ENV: test-px-models-ace2 - rules: - - <<: *test_rule_always_if_pytest_all - - <<: *test_rule_main_with_changes - <<: *test_rule_non_github_with_changes changes: paths: @@ -237,39 +236,22 @@ test-dx-models: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes - - <<: *test_rule_non_github_with_changes changes: paths: - earth2studio/models/dx/**/* - test/models/dx/**/* compare_to: 'refs/heads/main' - - <<: *test_rule_changes_only + - <<: *test_rule_non_github_with_changes changes: paths: - earth2studio/models/dx/**/* - test/models/dx/**/* compare_to: 'refs/heads/main' - - <<: *test_rule_never - -test-da-models: - extends: - - .test:base - variables: - TOX_ENV: test-da-models - rules: - - <<: *test_rule_always_if_pytest_all - - <<: *test_rule_main_with_changes - - <<: *test_rule_non_github_with_changes - changes: - paths: - - earth2studio/models/da/**/* - - test/models/da/**/* - compare_to: 'refs/heads/main' - <<: *test_rule_changes_only changes: paths: - - earth2studio/models/da/**/* - - test/models/da/**/* + - earth2studio/models/dx/**/* + - test/models/dx/**/* compare_to: 'refs/heads/main' - <<: *test_rule_never @@ -281,6 +263,12 @@ test-serve: rules: - <<: *test_rule_always_if_pytest_all - <<: *test_rule_main_with_changes + changes: + paths: + - earth2studio/serve/**/* + - test/serve/**/* + - serve/**/* + compare_to: 'refs/heads/main' - <<: *test_rule_non_github_with_changes changes: paths: diff --git a/CHANGELOG.md b/CHANGELOG.md index 5b5e9b0c8..36273bd9f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,39 +15,25 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Added Earth2Studio base schema for dataframe sources - Added Planetary Computer data source for ECMWF IFS analysis data - Added accumulated variable support to NCAR ERA5 data source -- Added routine to tile tensors to higher-dimensional tensors -- Added routine to concatenate tensors along specified coordinate dimension - Added Planetary Computer data source for GOES cloud and moisture imagery - Added ability to have seperate data and model cache locations via env variables - Added random dataframe source - Added base reflectivity to MRMS data source -- Added `fetch_dataframe` utility function -- Added data assimilation model class -- Added equirectangular interpolation data assimilation model -- Added StormCast SDA model -- Adding Beta serve utils with inference server and client implementations ### Changed - Changed available date for ARCO data source to be dynamically updated - Changed ISD data frame return to master schema -- handshake_coords is now accepting list of dimensions while remaining backwards-compatible - Updated CBottle infill to mixture of model checkpoints -- Updated GraphCastOperational and GraphCastSmall latitude input / output to be [90,-90] -- Updated GraphCast models to support multiple time inputs, multiple times will be looped not batched ### Deprecated ### Removed -- Removed device from cbottle SR load_model api - ### Fixed -- Fixed timezone bug in `CBottleVideo` that converted UTC time to local system time - Bug in cbottle datasource resulting identical samples for multiple samples - Bug in StormCast loading out-of-date model package, introduced in `5518edecbabee371c824b34f0f2ec269a4d6094f` -- Bug in spherical perturbations which did not use lmax from the SHT transform ### Security @@ -57,7 +43,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Updated CBottle repo to NVlabs location - Updated Makani dependency hash to later version with pyproject toml fix - Updated ACE2 dependency hash with setuptools fix -- Updated models using PhysicsNeMo to compliance with `nvidia-physicsnemo>=2.0` ## [0.12.1] - 2026-01-29 diff --git a/Makefile b/Makefile index 8d6efa653..ef427b48f 100644 --- a/Makefile +++ b/Makefile @@ -101,7 +101,7 @@ docs-dev: # Example DOCKER_REPO?=nvcr.io/dycvht5ows21 E2S_RELEASE_TAG?=0.12.0 E2S_IMAGE_NAME=$(DOCKER_REPO)/earth2studio-scicomp -E2S_IMAGE_TAG=v$(E2S_RELEASE_TAG).20260311.0 +E2S_IMAGE_TAG=v$(E2S_RELEASE_TAG).20260223.0 container-service: @test -n "$(DOCKER_REPO)" || (echo "DOCKER_REPO is not set!" && exit 1) DOCKER_BUILDKIT=1 docker build -t $(E2S_IMAGE_NAME):$(E2S_IMAGE_TAG) -f serve/Dockerfile . diff --git a/docs/conf.py b/docs/conf.py index ee64c639e..6ed0ed6a8 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -50,7 +50,7 @@ # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information version = ".".join(release.split(".")[:2]) project = "Earth2Studio" -copyright = "2026, NVIDIA" +copyright = "2025, NVIDIA" author = "NVIDIA" # -- General configuration --------------------------------------------------- @@ -83,7 +83,6 @@ "css/nvidia-sphinx-theme.css", ] html_theme_options = { - "public_docs_features": True, "logo": { "text": "Earth2Studio", "image_light": "_static/NVIDIA-Logo-V-ForScreen-ForLightBG.png", diff --git a/docs/modules/models.rst b/docs/modules/models.rst index 3df2f16a0..1d1f89e77 100644 --- a/docs/modules/models.rst +++ b/docs/modules/models.rst @@ -96,31 +96,6 @@ etc. WindgustAFNO Identity -:mod:`earth2studio.models.da`: Data Assimilation -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -Data assimilation models are a class of models that incorporate observational data -into model states or grids. These models process sparse, irregularly-distributed -observations (typically from DataFrames) and map them to regular grids or model -coordinate systems (typically as DataArrays). Data assimilation models support both -stateless and stateful operation, allowing them to process observations independently -or maintain internal state across time steps. - -.. warning :: - - Data Assimilation models are a new addition to Earth2Studio and APIs might be subject - to change without warning while the implementation is hardened. - -.. currentmodule:: earth2studio.models.da - -.. autosummary:: - :nosignatures: - :toctree: generated/models/da/ - :template: dataassim.rst - - InterpEquirectangular - StormCastSDA - :mod:`earth2studio.models`: Utilities ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff --git a/docs/templates/dataassim.rst b/docs/templates/dataassim.rst deleted file mode 100644 index c3e9907c5..000000000 --- a/docs/templates/dataassim.rst +++ /dev/null @@ -1,23 +0,0 @@ -:mod:`{{module}}`.{{objname}} -{{ underline }}============== - -.. currentmodule:: {{module}} - -.. autoclass:: {{ objname }} - - {% block methods %} - .. automethod:: __call__ - .. automethod:: create_generator - .. automethod:: load_default_package - .. automethod:: load_model - {% endblock %} - -.. _sphx_glr_backref_{{module}}.{{objname}}: - -.. minigallery:: {{module}}.{{objname}} - :add-heading: - :heading-level: ^ - -.. raw:: html - -
diff --git a/docs/userguide/about/install.md b/docs/userguide/about/install.md index 4905ce138..443c8fe7b 100644 --- a/docs/userguide/about/install.md +++ b/docs/userguide/about/install.md @@ -163,7 +163,6 @@ can take a long time to compile. :::{tab-item} pip ```bash -pip install --no-build-isolation "torch-harmonics @ git+https://github.com/NVIDIA/torch-harmonics.git@a632ca748a12bd9f74dbc1e00653317810991f74" pip install earth2studio[atlas] ``` @@ -268,7 +267,7 @@ for known suggestions/fixes related to this install process. ```bash export FORCE_CUDA_EXTENSION=1 -pip install --no-build-isolation "torch-harmonics @ git+https://github.com/NVIDIA/torch-harmonics.git@a632ca748a12bd9f74dbc1e00653317810991f74" +pip install --no-build-isolation torch-harmonics==0.8.0 pip install "makani @ git+https://github.com/NVIDIA/makani.git@fd1a62b9f27aebbc793f0cbafd838a3811de43fd" pip install earth2studio[fcn3] ``` @@ -278,6 +277,7 @@ pip install earth2studio[fcn3] ```bash export FORCE_CUDA_EXTENSION=1 +uv add torch-harmonics==0.8.0 --no-build-isolation uv add earth2studio --extra fcn3 ``` @@ -375,7 +375,6 @@ installed manually. :::{tab-item} pip ```bash -pip install --no-build-isolation "torch-harmonics @ git+https://github.com/NVIDIA/torch-harmonics.git@a632ca748a12bd9f74dbc1e00653317810991f74" pip install "makani @ git+https://github.com/NVIDIA/makani.git@fd1a62b9f27aebbc793f0cbafd838a3811de43fd" pip install earth2studio[sfno] ``` @@ -642,63 +641,6 @@ uv add earth2studio --extra windgust-afno ::::: :::::: -#### Data Assimilation - -:::{admonition} Warning -:class: warning - -Data assimilation model APIs are currently **in Beta** and may change in future -releases. Expect possible breaking changes as these APIs mature. -::: - -:::{admonition} Warning -:class: warning - -All data assimilation models require [CuPy](https://docs.cupy.dev/en/stable/) and [cuDF](https://docs.rapids.ai/api/cudf/stable/), -which are CUDA-dependent libraries. -The default installation uses CUDA 12 (i.e., `cupy-cuda12x`, `cudf-cu12`). -If your system uses a different CUDA version, you may need to adjust the dependencies. -::: - -::::::{tab-set} -:::::{tab-item} InterpEquirectangular -::::{tab-set} -:::{tab-item} pip - -```bash -pip install earth2studio[da-interp] -``` - -::: -:::{tab-item} uv - -```bash -uv add earth2studio --extra da-interp -``` - -::: -:::: -::::: -:::::{tab-item} StormCast SDA -::::{tab-set} -:::{tab-item} pip - -```bash -pip install earth2studio[da-stormcast] -``` - -::: -:::{tab-item} uv - -```bash -uv add earth2studio --extra da-stormcast -``` - -::: -:::: -::::: -:::::: - ### Submodule Dependencies A few features in various submodules require some specific dependencies that have been diff --git a/earth2studio/data/__init__.py b/earth2studio/data/__init__.py index a27049741..f33b6038c 100644 --- a/earth2studio/data/__init__.py +++ b/earth2studio/data/__init__.py @@ -41,7 +41,7 @@ from .rx import CosineSolarZenith, LandSeaMask, SurfaceGeoPotential from .time_window import TimeWindow from .ufs import UFSObsConv, UFSObsSat -from .utils import datasource_to_file, fetch_data, fetch_dataframe, prep_data_array +from .utils import datasource_to_file, fetch_data, prep_data_array from .wb2 import WB2ERA5, WB2Climatology, WB2ERA5_32x64, WB2ERA5_121x240 from .xr import ( DataArrayDirectory, diff --git a/earth2studio/data/ufs.py b/earth2studio/data/ufs.py index b84566bc8..b3335b23b 100644 --- a/earth2studio/data/ufs.py +++ b/earth2studio/data/ufs.py @@ -733,3 +733,10 @@ def _transform_column( def _add_task_columns(self, df: pd.DataFrame, task: _GSIAsyncTask) -> None: """Add satellite column for satellite data.""" df["satellite"] = task.satellite + + +if __name__ == "__main__": + + ds = UFSObsSat(satellites=["npp"], tolerance=timedelta(hours=6)) + df = ds(datetime(2024, 2, 1), ["atms"], ["lon", "variable"]) + print(df) diff --git a/earth2studio/data/utils.py b/earth2studio/data/utils.py index aa8bcb54f..ba155969f 100644 --- a/earth2studio/data/utils.py +++ b/earth2studio/data/utils.py @@ -43,39 +43,18 @@ from fsspec.utils import isfilelike from loguru import logger -from earth2studio.data.base import ( - DataFrameSource, - DataSource, - ForecastFrameSource, - ForecastSource, -) +from earth2studio.data.base import DataSource, ForecastSource from earth2studio.utils.interp import LatLonInterpolation from earth2studio.utils.time import ( leadtimearray_to_timedelta, timearray_to_datetime, to_time_array, ) -from earth2studio.utils.type import ( - CoordSystem, - FieldArray, - LeadTimeArray, - TimeArray, - VariableArray, -) +from earth2studio.utils.type import CoordSystem, LeadTimeArray, TimeArray, VariableArray if TYPE_CHECKING: from fsspec.implementations.cache_mapper import AbstractCacheMapper -try: - import cupy as cp -except ImportError: - cp = None - -try: - import cudf -except ImportError: - cudf = None - def fetch_data( source: DataSource | ForecastSource, @@ -83,18 +62,16 @@ def fetch_data( variable: VariableArray, lead_time: LeadTimeArray = np.array([np.timedelta64(0, "h")]), device: torch.device = "cpu", - interp_to: CoordSystem | None = None, + interp_to: CoordSystem = None, interp_method: str = "nearest", - legacy: bool = True, -) -> tuple[torch.Tensor, CoordSystem] | xr.DataArray: - """Utility function to fetch data arrays from particular sources and load data on - the target device. If desired, xarray interpolation/regridding in the spatial - domain can be used by passing a target coordinate system via the optional - `interp_to` argument. +) -> tuple[torch.Tensor, CoordSystem]: + """Utility function to fetch data for models and load data on the target device. + If desired, xarray interpolation/regridding in the spatial domain can be used + by passing a target coordinate system via the optional `interp_to` argument. Parameters ---------- - source : DataSource | ForecastSource + source : DataSource The data source to fetch from time : TimeArray Timestamps to return data for (UTC). @@ -104,24 +81,20 @@ def fetch_data( Lead times to fetch for each provided time, by default np.array(np.timedelta64(0, "h")) device : torch.device, optional - Torch device to load data tensor to, by default "cpu" + Torch devive to load data tensor to, by default "cpu" interp_to : CoordSystem, optional If provided, the fetched data will be interpolated to the coordinates specified by lat/lon arrays in this CoordSystem interp_method : str Interpolation method to use with xarray (by default 'nearest') - legacy : bool, optional - If True (default), returns tuple of (torch.Tensor, CoordSystem). - If False, returns xr.DataArray with numpy arrays for CPU or cupy arrays for CUDA. Returns ------- - tuple[torch.Tensor, CoordSystem] | xr.DataArray - If legacy=True: Tuple containing output tensor and coordinate OrderedDict. - If legacy=False: xr.DataArray with numpy arrays (CPU) or cupy arrays (CUDA). + tuple[torch.Tensor, CoordSystem] + Tuple containing output tensor and coordinate OrderedDict """ + sig = signature(source.__call__) - device = torch.device(device) if "lead_time" in sig.parameters: # Working with a Forecast Data Source @@ -139,90 +112,12 @@ def fetch_data( da = xr.concat(da, "lead_time") - if legacy: - return prep_data_array( - da, - device=device, - interp_to=interp_to, - interp_method=interp_method, - ) - - # Non-legacy path: return xr.DataArray - else: - if interp_to is not None: - raise ValueError( - "The interp_to argument is not supported when legacy is False. Set legacy=True to use interpolation." - ) - # Convert to cupy arrays if CUDA device and cupy is available - if device.type == "cuda": - if cp is not None: - with cp.cuda.Device(device.index or 0): - da = da.copy(data=cp.asarray(da.values)) - else: - raise ImportError( - "cupy is required when using device='cuda' with legacy=False. " - "Install cupy or use legacy=True." - ) - return da - - -def fetch_dataframe( - source: DataFrameSource | ForecastFrameSource, - time: TimeArray, - variable: VariableArray, - fields: FieldArray | None = None, - lead_time: LeadTimeArray = np.array([np.timedelta64(0, "h")]), - device: torch.device = "cpu", -) -> pd.DataFrame | cudf.DataFrame: - """Utility function to fetch data frames from particular sources - - Parameters - ---------- - source : DataFrameSource | ForecastFrameSource - The data source to fetch from - time : TimeArray - Timestamps to return data for (UTC). - variable : VariableArray - Strings or list of strings that refer to variables to return - fields : FieldArray | None - Array of strings indicating which fields to return in data frame, if None all - possible fields will be returned, by default None - lead_time : LeadTimeArray, optional - Lead times to fetch for each provided time, by default - np.array(np.timedelta64(0, "h")) - device : torch.device, optional - Torch device to load data tensor to, by default "cpu" - - Returns - ------- - pd.DataFrame | cudf.DataFrame - Pandas dataframe if device is CPU, cudf DataFrame if device is CUDA - """ - sig = signature(source.__call__) - - if "lead_time" in sig.parameters: - # Working with a ForecastFrameSource - df = source(time, lead_time, variable, fields=fields) # type: ignore - else: - # Combine all adjusted times and get unique values using broadcasting - all_times = (time[:, None] + lead_time).flatten() - unique_times = np.unique(all_times) - df = source(unique_times, variable, fields=fields) # type: ignore - # Add request meta-data - df.attrs = {"request_time": time, "request_lead_time": lead_time} - - # Convert to appropriate format based on device - device = torch.device(device) - if device.type == "cuda": - if cudf is None: - raise ImportError( - "cudf is required for CUDA device. Install with: pip install cudf" - ) - with cp.cuda.Device(device.index): - result = cudf.from_pandas(df) - return result - else: - return df + return prep_data_array( + da, + device=device, + interp_to=interp_to, + interp_method=interp_method, + ) def prep_data_array( @@ -344,9 +239,6 @@ def prep_data_inputs( if isinstance(variable, str): variable = [variable] - if isinstance(variable, np.ndarray): - variable = variable.astype(str).tolist() - if isinstance(time, datetime): time = [time] diff --git a/earth2studio/data/xr.py b/earth2studio/data/xr.py index d15e9df51..afcc4098e 100644 --- a/earth2studio/data/xr.py +++ b/earth2studio/data/xr.py @@ -187,28 +187,6 @@ def __call__( return self.da.sel(time=time, variable=variable) - async def fetch( # type: ignore[override] - self, - time: datetime | list[datetime] | TimeArray, - variable: str | list[str] | VariableArray, - ) -> xr.DataArray: - """Async function to get data - - Parameters - ---------- - time : datetime | list[datetime] | TimeArray - Timestamps to return data for (UTC). - variable : str | list[str] | VariableArray - String, list of strings or array of strings that refer to variables to - return. Must be in the GFS lexicon. - - Returns - ------- - xr.DataArray - Inference output data array - """ - return self.__call__(time, variable) - class DataSetFile: """A local xarray dataset file data source. This file should be compatible with diff --git a/earth2studio/io/zarr.py b/earth2studio/io/zarr.py index 608ccdcfa..6894ce81b 100644 --- a/earth2studio/io/zarr.py +++ b/earth2studio/io/zarr.py @@ -202,8 +202,7 @@ def add_array( if name in self.root and not kwargs.get("overwrite", False): raise RuntimeError( f"{name} is already in Zarr Store. " - + "To overwrite Zarr array pass overwrite=True to this function or" - + " backend_kwargs = {'overwrite': True} to the ZarrBackend constructor" + + "To overwrite Zarr array pass overwrite=True to this function" ) di = di.cpu().numpy() if di is not None else None diff --git a/earth2studio/models/da/__init__.py b/earth2studio/models/da/__init__.py deleted file mode 100644 index cbb768276..000000000 --- a/earth2studio/models/da/__init__.py +++ /dev/null @@ -1,18 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -from .interp import InterpEquirectangular -from .sda_stormcast import StormCastSDA diff --git a/earth2studio/models/da/base.py b/earth2studio/models/da/base.py deleted file mode 100644 index e0819ed81..000000000 --- a/earth2studio/models/da/base.py +++ /dev/null @@ -1,188 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. -from __future__ import annotations - -from collections.abc import Generator -from typing import Any, Protocol, runtime_checkable - -import pandas as pd -import xarray as xr - -from earth2studio.utils.type import CoordSystem, FrameSchema - -try: - import cudf -except ImportError: - cudf = None # type: ignore[assignment, misc] - - -@runtime_checkable -class AssimilationModel(Protocol): - """Data assimilation model interface""" - - def __call__( - self, - *args: pd.DataFrame | xr.DataArray | None, - ) -> tuple[pd.DataFrame | xr.DataArray, ...]: - """Stateless iteration for the data assimilation model. - - Processes observations and returns assimilated data without maintaining - internal state between calls. This method is suitable for independent - processing of observation batches. - - Parameters - ---------- - *args : pd.DataFrame | xr.DataArray | None - Variable number of observation arguments. Each argument can be a - DataFrame (pandas or cudf DataFrame) or xarray DataArray - containing observation data. None can be passed for optional - arguments when no input data is available. - - Returns - ------- - tuple[pd.DataFrame | xr.DataArray, ...] - Assimilated data output. Can return a combination of DataFrames or - xarray DataArrays depending on the particular model. Output is expect to be - on the same device as the model. - """ - - def create_generator( - self, - *args: pd.DataFrame | xr.DataArray, - ) -> Generator[ - tuple[pd.DataFrame | xr.DataArray, ...], - tuple[pd.DataFrame | xr.DataArray | None, ...], - None, - ]: - """Creates a generator which accepts collection of input observations and - outputs a collection of assimilated data. Used for both stateless and stateful - iterations of the data assimilation model - - The generator accepts observations (DataFrame or DataArray) via the send() - method and yields assimilated data (DataFrame or DataArray) as output. - Supports any number of arguments (variadic). - - Parameters - ---------- - *args : pd.DataFrame | xr.DataArray - Variable number of initialization arguments, if any are required by - the model. Each argument can be a DataFrame (pandas or cudf - DataFrame) or xarray DataArray containing initial state data. - - Yields - ------ - tuple[pd.DataFrame | xr.DataArray, ...] - Generator yields multiple arguments of assimilated data. Each argument - can be a DataFrame (PyArrow Table or cudf DataFrame) or xarray DataArray. - Supports any number of arguments. - - Receives - -------- - tuple[pd.DataFrame | xr.DataArray | None, ...] - Observations sent via generator.send() as multiple arguments. Each - argument can be a DataFrame (PyArrow Table or cudf DataFrame) or xarray - DataArray. None is sent initially to start the generator and can also be - sent for iterations where no input data is available. Supports any number - of arguments. - - Examples - -------- - >>> generator = model.create_generator() - >>> generator.send(None) # Prime the generator - >>> # Process observations over time - >>> for obs in observations: - ... result = generator.send(obs) # Send observations, receive assimilated data - ... # result is a tuple of DataFrames or DataArrays - >>> generator.close() # Clean up - """ - pass - - def init_coords(self) -> tuple[FrameSchema | CoordSystem, ...] | None: - """Initialization coordinate system required by the assimilation model. - - Specifies the coordinate system(s) for initial state data that must be provided - before the model can process observations. The returned coordinate systems should - match the expected input format for the first argument(s) passed to ``__call__`` - or sent to ``create_generator`` when initializing the model state. - - Returns - ------- - tuple[FrameSchema | CoordSystem, ...] | None - Tuple of coordinate systems or frame schemas defining the structure of - required initialization data. Returns ``None`` if the model does not require - initialization data (e.g., stateless models). - """ - pass - - def input_coords(self) -> tuple[FrameSchema | CoordSystem, ...]: - """Input coordinate system of assimilation model. - - For DataFrame inputs, this should return a PyArrow schema (or a wrapper - containing schema and constraints). For tensor inputs, this should return - a CoordSystem. - - Returns - ------- - tuple[FrameSchema | CoordSystem, ...] - Tuple of coordinate systems or frame schemas, one for each input argument - that __call__ or create_generator accepts - """ - pass - - def output_coords( - self, - input_coords: tuple[FrameSchema | CoordSystem, ...], - *args: Any, - **kwargs: Any, - ) -> tuple[FrameSchema | CoordSystem, ...]: - """Output coordinate system of the assimilation model given an input coordinate - system. - - Parameters - ---------- - input_coords : tuple[FrameSchema | CoordSystem, ...] - Input coordinate system tuple. FrameSchema (OrderedDict mapping field names - to numpy arrays) for DataFrame inputs, or CoordSystem (OrderedDict mapping - dimension names to coordinate arrays) for tensor inputs - *args - Additional positional arguments - **kwargs - Additional keyword arguments, typically including request metadata such as - request_time and request_lead_time from DataFrame attrs - - Returns - ------- - tuple[FrameSchema | CoordSystem, ...] - Tuple of coordinate systems or frame schemas, one for each output argument - that __call__ or create_generator returns - """ - pass - - def to(self, device: Any) -> AssimilationModel: - """Moves assimilation model onto inference device, this is typically satisfied - via `torch.nn.Module`. - - Parameters - ---------- - device : Any - Object representing the inference device, typically `torch.device` or str - - Returns - ------- - AssimilationModel - Returns instance of prognostic - """ - pass diff --git a/earth2studio/models/da/interp.py b/earth2studio/models/da/interp.py deleted file mode 100644 index f51c2aacb..000000000 --- a/earth2studio/models/da/interp.py +++ /dev/null @@ -1,589 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. -from collections.abc import Generator -from typing import Any - -import numpy as np -import pandas as pd -import torch -import xarray as xr -from loguru import logger - -from earth2studio.models.da.utils import ( - dfseries_to_torch, - filter_time_range, - validate_observation_fields, -) -from earth2studio.utils.imports import ( - OptionalDependencyFailure, - check_optional_dependencies, -) -from earth2studio.utils.time import normalize_time_tolerance -from earth2studio.utils.type import CoordSystem, FrameSchema, TimeTolerance - -try: - import cupy as cp -except ImportError: - OptionalDependencyFailure("gpu") - cp = None # type: ignore[assignment] - - -@check_optional_dependencies() -class InterpEquirectangular(torch.nn.Module): - """Interpolation assimilation model that interpolates sparse observations to a - lat-lon grid. - - This is a sample implementation of an AssimilationModel that: - - Accepts DataFrames with observations (time, lat, lon, observation, variable) - - Interpolates observations to a regular lat-lon grid using specified method - - Validates input observations against schema constraints - - Supports interpolation methods: 'nearest' or 'smolyak' (Smolyak sparse grid algorithm) - - Parameters - ---------- - lat : np.ndarray | None, optional - Latitude coordinates for output grid, by default None (uses default grid over - CONUS) - lon : np.ndarray | None, optional - Longitude coordinates for output grid, by default None (uses default - grid over CONUS) - interp_method : str, optional - Interpolation method to use: 'nearest' or 'smolyak', by default "smolyak" - time_tolerance : TimeTolerance, optional - Time tolerance for filtering observations. Observations within the tolerance - window around each requested time will be used for interpolation, by default - np.timedelta64(10, "m") - - Raises - ------ - ValueError - If interp_method is not one of the supported methods - """ - - # Acceptable variables for this model - VARIABLES = ["t2m", "u10m", "v10m", "sp"] - - def __init__( - self, - lat: np.ndarray | None = None, - lon: np.ndarray | None = None, - interp_method: str = "smolyak", - time_tolerance: TimeTolerance = np.timedelta64(10, "m"), - ) -> None: - if interp_method not in ["nearest", "smolyak"]: - raise ValueError( - f"interp_method must be one of ['nearest', 'smolyak'], " - f"got {interp_method}" - ) - super().__init__() - self._lat = ( - lat if lat is not None else np.linspace(25.0, 50.0, 101, dtype=np.float32) - ) - self._lon = ( - lon if lon is not None else np.linspace(235.0, 295.0, 241, dtype=np.float32) - ) - self.interp_method = interp_method - self._tolerance = normalize_time_tolerance(time_tolerance) - self.register_buffer("device_buffer", torch.empty(0), persistent=False) - - def init_coords(self) -> None: - """Initialization coords (not required)""" - return None - - def input_coords(self) -> tuple[FrameSchema]: - """Input coordinate system specifying required DataFrame fields. - - Returns - ------- - tuple[FrameSchema] - Tuple containing coordinate system dictionary with field names as keys: - - variable: array of acceptable variable values - - time, lat, lon, observation: empty arrays (dynamic dimensions) - """ - return ( - FrameSchema( - { - "time": np.empty(0, dtype="datetime64[ns]"), - "lat": np.empty(0, dtype=np.float32), - "lon": np.empty(0, dtype=np.float32), - "observation": np.empty(0, dtype=np.float32), - "variable": np.array(self.VARIABLES, dtype=str), - } - ), - ) - - def output_coords( - self, - input_coords: tuple[CoordSystem], - request_time: np.ndarray, - **kwargs: Any, - ) -> tuple[CoordSystem]: - """Output coordinate system for assimilated data. - - Parameters - ---------- - input_coords : tuple[CoordSystem, ...] - Input coordinate system (CoordSystem for DataFrame input) - - Returns - ------- - tuple[CoordSystem] - Coordinate system dictionary with time, variable, lat, and lon dimensions - - Raises - ------ - ValueError - If input_coords are not valid - """ - # Extract variables from first input coord system - if len(input_coords) > 0 and "variable" in input_coords[0]: - variables = input_coords[0]["variable"] - else: - variables = self.VARIABLES - - return ( - CoordSystem( - { - "time": request_time, - "variable": np.array(variables, dtype=str), - "lat": self._lat, - "lon": self._lon, - } - ), - ) - - def __call__(self, obs: pd.DataFrame) -> xr.DataArray: - """Stateless forward pass""" - input_coords = self.input_coords() - (output_coords,) = self.output_coords(input_coords, **obs.attrs) - # Validate observation types match input_coords - validate_observation_fields(obs, required_fields=list(input_coords[0].keys())) - return self._interpolate_dataframe(obs, output_coords) - - def create_generator(self) -> Generator[ - xr.DataArray, - pd.DataFrame, - None, - ]: - """Creates a generator which accepts collection of input observations and - outputs a collection of assimilated data. - - Parameters - ---------- - x : AssimilationInput - Input configuration for the assimilation model - - Yields - ------ - xr.DataArray - Assimilated data output the generator yields - - Receives - -------- - *DataFrame - Observations sent via generator.send() - """ - # Validate input configuration - - # Initialize generator - first yield is None to start - observations = yield None # type: ignore[misc] - try: - while True: - da = self.__call__(observations) - observations = yield da - except GeneratorExit: - logger.debug("InterpEquirectangular clean up complete.") - - def _interpolate_dataframe( - self, df: pd.DataFrame, output_coords: CoordSystem - ) -> xr.DataArray: - """Interpolate DataFrame observations to a regular lat-lon grid. - - Parameters - ---------- - df : pd.DataFrame - Input observations DataFrame with columns: time, lat, lon, observation, variable - output_coords : CoordSystem - Output coordinate system with time, variable, lat, lon dimensions - - Returns - ------- - xr.DataArray - Interpolated data array on the output grid - """ - variables = output_coords["variable"] - lat_grid = output_coords["lat"] - lon_grid = output_coords["lon"] - time_coords = output_coords["time"] - - # Initialize output array: (time, variable, lat, lon) - n_time = len(time_coords) - n_var = len(variables) - n_lat = len(lat_grid) - n_lon = len(lon_grid) - - device = self.device_buffer.device - lat_grid_t = torch.tensor(lat_grid, dtype=torch.float32, device=device) - lon_grid_t = torch.tensor(lon_grid, dtype=torch.float32, device=device) - - # Create meshgrid using torch - lon_mesh_t, lat_mesh_t = torch.meshgrid(lon_grid_t, lat_grid_t, indexing="ij") - # Stack and reshape to [n_lat * n_lon, 2] with (lat, lon) pairs - target_points_t = torch.stack( - [lat_mesh_t.T.ravel(), lon_mesh_t.T.ravel()], dim=1 - ) - - # Initialize output tensor - interpolated_data = torch.full( - (n_time, n_var, n_lat, n_lon), - float("nan"), - dtype=torch.float32, - device=device, - ) - - # Process each time step separately - for t_idx, request_time in enumerate(time_coords): - # Filter observations within tolerance window for this time step - time_filtered_df = filter_time_range( - df, request_time, self._tolerance, time_column="time" - ) - - # Group observations by variable and interpolate each - for var_idx, variable in enumerate(variables): - var_df = time_filtered_df[ - time_filtered_df["variable"] == variable - ].copy() - - if len(var_df) == 0: - # No observations for this variable at this time, leave as NaN - continue - - # Extract observation points and values, convert to torch - source_lat = dfseries_to_torch( - var_df["lat"], dtype=torch.float32, device=device - ) - source_lon = dfseries_to_torch( - var_df["lon"], dtype=torch.float32, device=device - ) - source_points_t = torch.stack([source_lat, source_lon], dim=1) - values_t = dfseries_to_torch( - var_df["observation"], dtype=torch.float32, device=device - ) - - # Interpolate to grid using PyTorch - grid_values = self._interpolate_scattered( - source_points_t, values_t, target_points_t, n_lat, n_lon - ) - - # Assign to this time step - interpolated_data[t_idx, var_idx, :, :] = grid_values - - # Create DataArray (convert tensor to numpy or cupy based on device) - if device.type == "cuda" and cp is not None: - data_array = cp.asarray(interpolated_data) # Zero-copy - else: - data_array = interpolated_data.cpu().numpy() - - da = xr.DataArray( - data=data_array, - dims=["time", "variable", "lat", "lon"], - coords={ - "time": time_coords, - "variable": variables, - "lat": lat_grid, - "lon": lon_grid, - }, - ) - - return da - - def _interpolate_scattered( - self, - source_points: torch.Tensor, - values: torch.Tensor, - target_points: torch.Tensor, - n_lat: int, - n_lon: int, - ) -> torch.Tensor: - """Interpolate scattered points to target grid using PyTorch. - - Accounts for periodic boundary condition in longitude. - Automatically converts longitude from -180,180 range to 0,360 range if needed. - - Parameters - ---------- - source_points : torch.Tensor - Source points [N, 2] with (lat, lon) coordinates. Longitude can be in - -180,180 or 0,360 range. - values : torch.Tensor - Values at source points [N] - target_points : torch.Tensor - Target grid points [M, 2] with (lat, lon) coordinates. Longitude can be in - -180,180 or 0,360 range. - n_lat : int - Number of latitude points in output grid - n_lon : int - Number of longitude points in output grid - - Returns - ------- - torch.Tensor - Interpolated values [n_lat, n_lon] - """ - target_lat = target_points[:, 0:1] # [M, 1] - target_lon = target_points[:, 1:2] # [M, 1] - source_lat = source_points[:, 0:1].T # [1, N] - source_lon = source_points[:, 1:2].T # [1, N] - - # Normalize longitude from -180,180 to 0,360 range - # Convert negative longitudes to positive: -180 -> 180, -90 -> 270, etc. - target_lon = torch.where(target_lon < 0, target_lon + 360.0, target_lon) - source_lon = torch.where(source_lon < 0, source_lon + 360.0, source_lon) - - # Latitude distance (not periodic) - lat_diff = target_lat - source_lat # [M, N] - lat_dist_sq = lat_diff**2 - - # Longitude distance with periodic boundary (0-360) - lon_diff = target_lon - source_lon # [M, N] - # Compute periodic distance: min(|diff|, 360 - |diff|) - lon_diff_abs = torch.abs(lon_diff) - lon_dist = torch.minimum(lon_diff_abs, 360.0 - lon_diff_abs) - lon_dist_sq = lon_dist**2 - distances = torch.sqrt(lat_dist_sq + lon_dist_sq) - - if self.interp_method == "nearest": - # Nearest neighbor interpolation using distance - nearest_indices = torch.argmin(distances, dim=1) - interpolated = values[nearest_indices] - elif self.interp_method == "smolyak": - interpolated = self._smolyak_interpolate( - source_points, values, target_points - ) - else: - raise ValueError(f"Unsupported interpolation type: {self.interp_method}") - - # Reshape to grid - return interpolated.reshape(n_lat, n_lon) - - def _chebyshev_polynomials(self, x: torch.Tensor, degree: int) -> torch.Tensor: - """Evaluate Chebyshev polynomials T_0(x) through T_degree(x) using recurrence. - - Parameters - ---------- - x : torch.Tensor - Input values [..., N] - degree : int - Maximum polynomial degree - - Returns - ------- - torch.Tensor - Chebyshev polynomial values [..., N, degree+1] - """ - shape = x.shape - out = torch.zeros(*shape, degree + 1, dtype=x.dtype, device=x.device) - - # T_0(x) = 1 - out[..., 0] = 1.0 - - if degree >= 1: - # T_1(x) = x - out[..., 1] = x - - # Recurrence: T_n(x) = 2*x*T_{n-1}(x) - T_{n-2}(x) - for n in range(2, degree + 1): - out[..., n] = 2.0 * x * out[..., n - 1] - out[..., n - 2] - - return out - - def _smolyak_interpolate( - self, - source_points: torch.Tensor, - values: torch.Tensor, - target_points: torch.Tensor, - ) -> torch.Tensor: - """Interpolate using Smolyak's algorithm with Chebyshev polynomial basis. - - Vectorized implementation using Smolyak sparse grid structure for efficient - polynomial interpolation. Uses tensor products of Chebyshev polynomials. - - Parameters - ---------- - source_points : torch.Tensor - Source points [N, 2] with (lat, lon) coordinates - values : torch.Tensor - Values at source points [N] - target_points : torch.Tensor - Target points [M, 2] with (lat, lon) coordinates - - Returns - ------- - torch.Tensor - Interpolated values [M] - """ - device = source_points.device - N = source_points.shape[0] - M = target_points.shape[0] - d = 2 # 2D: lat and lon - - # Normalize coordinates to [-1, 1]^2 for Chebyshev polynomials - source_lat = source_points[:, 0] - source_lon = source_points[:, 1] - target_lat = target_points[:, 0] - target_lon = target_points[:, 1] - - # Normalize longitude to 0-360 range first - source_lon = torch.where(source_lon < 0, source_lon + 360.0, source_lon) - target_lon = torch.where(target_lon < 0, target_lon + 360.0, target_lon) - - # Get bounds with padding - lat_min, lat_max = source_lat.min().item(), source_lat.max().item() - lon_min, lon_max = source_lon.min().item(), source_lon.max().item() - - lat_range = lat_max - lat_min - lon_range = lon_max - lon_min - lat_min -= lat_range * 0.1 - lat_max += lat_range * 0.1 - lon_min -= lon_range * 0.1 - lon_max += lon_range * 0.1 - - # Clamp to valid ranges - lat_min = max(lat_min, -90.0) - lat_max = min(lat_max, 90.0) - lon_min = max(lon_min, 0.0) - lon_max = min(lon_max, 360.0) - - # Normalize to [-1, 1] - source_lat_norm = 2.0 * (source_lat - lat_min) / (lat_max - lat_min) - 1.0 - source_lon_norm = 2.0 * (source_lon - lon_min) / (lon_max - lon_min) - 1.0 - target_lat_norm = 2.0 * (target_lat - lat_min) / (lat_max - lat_min) - 1.0 - target_lon_norm = 2.0 * (target_lon - lon_min) / (lon_max - lon_min) - 1.0 - - # Determine Smolyak level mu adaptively based on number of points - # For 2D: mu=1->5, mu=2->13, mu=3->29, mu=4->65, mu=5->145, mu=6->321, mu=7->705 points - mu_thresholds = [(500, 7), (200, 6), (100, 5), (50, 4), (25, 3), (9, 2)] - mu = 1 - max_degree = 1 - for threshold, level in mu_thresholds: - if N >= threshold: - mu = level - max_degree = level - break - - # Generate Smolyak indices: combinations where d < sum(i) <= d + mu - # Vectorized generation - i1_range = torch.arange(1, mu + 2, device=device) - i2_range = torch.arange(1, mu + 2, device=device) - i1_grid, i2_grid = torch.meshgrid(i1_range, i2_range, indexing="ij") - mask = (d < (i1_grid + i2_grid)) & ((i1_grid + i2_grid) <= (d + mu)) - smol_i1 = i1_grid[mask] - smol_i2 = i2_grid[mask] - - # Compute m_i(i) = 2^(i-1) + 1 for i > 1, else special cases - def m_i(i: torch.Tensor) -> torch.Tensor: - result = torch.where( - i == 1, - torch.tensor(1, device=device), - torch.where(i == 0, torch.tensor(0, device=device), (2 ** (i - 1) + 1)), - ) - return result - - # Get degrees for each dimension - deg1_all = torch.clamp(m_i(smol_i1) - 1, max=max_degree) - deg2_all = torch.clamp(m_i(smol_i2) - 1, max=max_degree) - - # Build unique basis terms (deg_lat, deg_lon) pairs - basis_terms = set() - for idx in range(len(smol_i1)): - d1 = int(deg1_all[idx].item()) - d2 = int(deg2_all[idx].item()) - for d1_val in range(d1 + 1): - for d2_val in range(d2 + 1): - if d1_val + d2_val <= max_degree: - basis_terms.add((d1_val, d2_val)) - - # Fallback if no terms - if len(basis_terms) == 0: - for deg_lat in range(max_degree + 1): - for deg_lon in range(max_degree + 1): - if deg_lat + deg_lon <= max_degree: - basis_terms.add((deg_lat, deg_lon)) - - # Evaluate Chebyshev polynomials for source points - cheb_lat = self._chebyshev_polynomials( - source_lat_norm, max_degree - ) # [N, max_degree+1] - cheb_lon = self._chebyshev_polynomials( - source_lon_norm, max_degree - ) # [N, max_degree+1] - - # Build basis matrix vectorized - basis_list = [] - for deg_lat, deg_lon in sorted(basis_terms): - basis_list.append(cheb_lat[:, deg_lat] * cheb_lon[:, deg_lon]) - - if len(basis_list) == 0: - basis_matrix = torch.ones(N, 1, device=device) - else: - basis_matrix = torch.stack(basis_list, dim=1) # [N, n_basis] - - # Limit basis size to avoid overfitting - if basis_matrix.shape[1] > N: - basis_matrix = basis_matrix[:, :N] - - # Solve for coefficients using regularized least squares (vectorized) - reg = 1e-6 * torch.eye(basis_matrix.shape[1], device=device) - ATA = basis_matrix.T @ basis_matrix + reg - ATb = basis_matrix.T @ values.unsqueeze(1) - try: - coeffs = torch.linalg.solve(ATA, ATb).squeeze(1) # [n_basis] - except Exception: - # Fallback to SVD - U, S, Vt = torch.linalg.svd(basis_matrix, full_matrices=False) - threshold_svd = 1e-6 * S[0] if S[0] > 0 else 1e-6 - S_inv = torch.where(S > threshold_svd, 1.0 / S, torch.zeros_like(S)) - coeffs = (Vt.T @ (S_inv[:, None] * (U.T @ values.unsqueeze(1)))).squeeze(1) - - # Evaluate polynomial at target points (vectorized) - cheb_lat_target = self._chebyshev_polynomials( - target_lat_norm, max_degree - ) # [M, max_degree+1] - cheb_lon_target = self._chebyshev_polynomials( - target_lon_norm, max_degree - ) # [M, max_degree+1] - - # Build target basis matrix with same structure - target_basis_list = [] - for deg_lat, deg_lon in sorted(basis_terms): - target_basis_list.append( - cheb_lat_target[:, deg_lat] * cheb_lon_target[:, deg_lon] - ) - - if len(target_basis_list) == 0: - target_basis = torch.ones(M, 1, device=device) - else: - target_basis = torch.stack(target_basis_list, dim=1) # [M, n_basis] - # Match coefficient size - if target_basis.shape[1] > len(coeffs): - target_basis = target_basis[:, : len(coeffs)] - elif target_basis.shape[1] < len(coeffs): - coeffs = coeffs[: target_basis.shape[1]] - - # Evaluate: target_basis @ coeffs (fully vectorized) - interpolated = target_basis @ coeffs # [M] - - return interpolated diff --git a/earth2studio/models/da/sda_stormcast.py b/earth2studio/models/da/sda_stormcast.py deleted file mode 100644 index 59980d2b0..000000000 --- a/earth2studio/models/da/sda_stormcast.py +++ /dev/null @@ -1,914 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -import warnings -from collections import OrderedDict -from collections.abc import Generator -from itertools import product - -import numpy as np -import pandas as pd -import torch -import xarray as xr -import zarr -from loguru import logger - -from earth2studio.data import GFS_FX, HRRR, DataSource, ForecastSource, fetch_data -from earth2studio.models.auto import AutoModelMixin, Package -from earth2studio.models.da.base import AssimilationModel -from earth2studio.models.da.utils import filter_time_range -from earth2studio.utils import ( - handshake_coords, - handshake_dim, - handshake_size, -) -from earth2studio.utils.imports import ( - OptionalDependencyFailure, - check_optional_dependencies, -) -from earth2studio.utils.time import normalize_time_tolerance -from earth2studio.utils.type import CoordSystem, FrameSchema, TimeTolerance - -try: - import cupy as cp -except ImportError: - cp = None - -try: - from scipy.spatial import cKDTree -except ImportError: - OptionalDependencyFailure("stormcast") - cKDTree = None - -try: - from omegaconf import OmegaConf - from physicsnemo.diffusion.guidance import ( - DataConsistencyDPSGuidance, - DPSScorePredictor, - ) - from physicsnemo.diffusion.noise_schedulers import EDMNoiseScheduler - from physicsnemo.diffusion.preconditioners import EDMPreconditioner - from physicsnemo.diffusion.preconditioners.legacy import EDMPrecond - from physicsnemo.diffusion.samplers import sample - from physicsnemo.models.diffusion_unets import StormCastUNet -except ImportError: - OptionalDependencyFailure("stormcast") - StormCastUNet = None - EDMPreconditioner = None - OmegaConf = None - - -# Variables used in StormCastV1 paper -VARIABLES = ( - ["u10m", "v10m", "t2m", "msl"] - + [ - var + str(level) - for var, level in product( - ["u", "v", "t", "q", "Z", "p"], - map( - lambda x: str(x) + "hl", - [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 15, 20, 25, 30], - ), - ) - if not ((var == "p") and (int(level.replace("hl", "")) > 20)) - ] - + [ - "refc", - ] -) - -CONDITIONING_VARIABLES = ["u10m", "v10m", "t2m", "tcwv", "sp", "msl"] + [ - var + str(level) - for var, level in product(["u", "v", "z", "t", "q"], [1000, 850, 500, 250]) -] - -INVARIANTS = ["lsm", "orography"] - - -@check_optional_dependencies() -class StormCastSDA(torch.nn.Module, AutoModelMixin): - """StormCast with score-based data assimilation (SDA) using diffusion posterior - sampling for convection-allowing regional forecasts. Combines a regression and - diffusion model with DPS guidance to assimilate observations during inference. - Model time step size is 1 hour, taking as input: - - - High-resolution (3km) HRRR state over the central United States (99 vars) - - High-resolution land-sea mask and orography invariants - - Coarse resolution (25km) global state (26 vars) - - Point observations for data assimilation - - The high-resolution grid is the HRRR Lambert conformal projection. - Coarse-resolution inputs are regridded to the HRRR grid internally. - - Note - ---- - For more information see the following references: - - - https://arxiv.org/abs/2408.10958 - - https://huggingface.co/nvidia/stormcast-v1-era5-hrrr - - https://arxiv.org/abs/2306.10574 - - Parameters - ---------- - regression_model : torch.nn.Module - Deterministic model used to make an initial prediction - diffusion_model : torch.nn.Module - Generative model correcting the deterministic prediciton - means : torch.Tensor - Mean value of each input high-resolution variable - stds : torch.Tensor - Standard deviation of each input high-resolution variable - invariants : torch.Tensor - Static invariant quantities - hrrr_lat_lim : tuple[int, int], optional - HRRR grid latitude limits, defaults to be the StormCastV1 region in central - United States, by default (273, 785) - hrrr_lon_lim : tuple[int, int], optional - HRRR grid longitude limits, defaults to be the StormCastV1 region in central - United States,, by default (579, 1219) - variables : np.array, optional - High-resolution variables, by default np.array(VARIABLES) - conditioning_means : torch.Tensor | None, optional - Means to normalize conditioning data, by default None - conditioning_stds : torch.Tensor | None, optional - Standard deviations to normalize conditioning data, by default None - conditioning_variables : np.array, optional - Global variables for conditioning, by default np.array(CONDITIONING_VARIABLES) - conditioning_data_source : DataSource | ForecastSource | None, optional - Data Source to use for global conditioning. Required for running in iterator mode, by default None - time_tolerance : TimeTolerance, optional - Time tolerance for filtering observations. Observations within the tolerance - window around each requested time will be used for data assimilation, - by default np.timedelta64(10, "m") - sampler_steps : int, optional - Number of diffusion sampler steps, by default 36 - sampler_args : dict[str, float | int] | None, optional - Arguments to pass to the diffusion sampler, by default None - sda_std_obs : float, optional - Observation noise standard deviation for DPS guidance, by default 0.1 - sda_gamma : float, optional - SDA scaling factor for DPS guidance, by default 0.001 - """ - - def __init__( - self, - regression_model: torch.nn.Module, - diffusion_model: torch.nn.Module, - means: torch.Tensor, - stds: torch.Tensor, - invariants: torch.Tensor, - hrrr_lat_lim: tuple[int, int] = (273, 785), - hrrr_lon_lim: tuple[int, int] = (579, 1219), - variables: np.array = np.array(VARIABLES), - conditioning_means: torch.Tensor | None = None, - conditioning_stds: torch.Tensor | None = None, - conditioning_variables: np.array = np.array(CONDITIONING_VARIABLES), - conditioning_data_source: DataSource | ForecastSource | None = None, - time_tolerance: TimeTolerance = np.timedelta64(10, "m"), - sampler_steps: int = 36, - sampler_args: dict[str, float | int] | None = None, - sda_std_obs: float = 0.1, - sda_gamma: float = 0.001, - ): - super().__init__() - self.regression_model = regression_model - self.diffusion_model = diffusion_model - self.register_buffer("means", means) - self.register_buffer("stds", stds) - self.register_buffer("invariants", invariants) - self.register_buffer("device_buffer", torch.empty(0)) - self.sampler_steps = sampler_steps - self.sampler_args = { - "sigma_min": 0.002, - "sigma_max": 800, - "rho": 7, - "S_churn": 0.0, - "S_min": 0.0, - "S_max": float("inf"), - "S_noise": 1, - } - if sampler_args is not None: - self.sampler_args.update(sampler_args) - self._tolerance = normalize_time_tolerance(time_tolerance) - self.sda_std_obs = sda_std_obs - self.sda_dps_norm = 2 - self.sda_gamma = sda_gamma - - hrrr_lat, hrrr_lon = HRRR.grid() - self.lat = hrrr_lat[ - hrrr_lat_lim[0] : hrrr_lat_lim[1], hrrr_lon_lim[0] : hrrr_lon_lim[1] - ] - self.lon = hrrr_lon[ - hrrr_lat_lim[0] : hrrr_lat_lim[1], hrrr_lon_lim[0] : hrrr_lon_lim[1] - ] - - self.hrrr_x = HRRR.HRRR_X[hrrr_lon_lim[0] : hrrr_lon_lim[1]] - self.hrrr_y = HRRR.HRRR_Y[hrrr_lat_lim[0] : hrrr_lat_lim[1]] - - # Build ordered boundary polygon from 2D grid perimeter for - # point-in-grid testing (top row -> right col -> bottom row -> left col) - self._grid_boundary = np.column_stack( - [ - np.concatenate( - [ - self.lat[0, :], - self.lat[1:, -1], - self.lat[-1, -2::-1], - self.lat[-2:0:-1, 0], - ] - ), - np.concatenate( - [ - self.lon[0, :], - self.lon[1:, -1], - self.lon[-1, -2::-1], - self.lon[-2:0:-1, 0], - ] - ), - ] - ) # [n_boundary, 2] ordered (lat, lon) - - # Build a KD-tree over (lat, lon) for efficient nearest-grid-point queries - # TODO: Make cpu and gpu support - self._grid_tree = cKDTree(np.column_stack([self.lat.ravel(), self.lon.ravel()])) - - self.variables = variables - - self.conditioning_variables = conditioning_variables - self.conditioning_data_source = conditioning_data_source - if conditioning_data_source is None: - warnings.warn( - "No conditioning data source was provided to StormCast, " - + "set the conditioning_data_source attribute of the model " - + "before running inference." - ) - - if conditioning_means is not None: - self.register_buffer("conditioning_means", conditioning_means) - - if conditioning_stds is not None: - self.register_buffer("conditioning_stds", conditioning_stds) - - @property - def device(self) -> torch.device: - return self.device_buffer.device - - def init_coords(self) -> tuple[CoordSystem]: - """Initialization coordinate system""" - return ( - OrderedDict( - { - "time": np.empty(0), - "lead_time": np.array([np.timedelta64(0, "h")]), - "variable": np.array(self.variables), - "hrrr_y": self.hrrr_y, - "hrrr_x": self.hrrr_x, - } - ), - ) - - def input_coords(self) -> tuple[FrameSchema]: - """Input coordinate system specifying required DataFrame fields.""" - return ( - FrameSchema( - { - "time": np.empty(0, dtype="datetime64[ns]"), - "lat": np.empty(0, dtype=np.float32), - "lon": np.empty(0, dtype=np.float32), - "observation": np.empty(0, dtype=np.float32), - "variable": np.array(self.variables, dtype=str), - } - ), - ) - - def output_coords(self, input_coords: tuple[CoordSystem]) -> tuple[CoordSystem]: - """Output coordinate system of the assimilation model - - Parameters - ---------- - input_coords : tuple[CoordSystem] - Coordinates of tensor used to initialize the forecast model. - - Returns - ------- - CoordSystem - Coordinate system dictionary - """ - - output_coords = OrderedDict( - { - "time": np.empty(0), - "lead_time": np.array([np.timedelta64(1, "h")]), - "variable": np.array(self.variables), - "hrrr_y": self.hrrr_y, - "hrrr_x": self.hrrr_x, - } - ) - - target_input_coords = self.init_coords()[0] - - handshake_dim(input_coords[0], "hrrr_x", 4) - handshake_dim(input_coords[0], "hrrr_y", 3) - handshake_dim(input_coords[0], "variable", 2) - # Index coords are arbitrary as long its on the HRRR grid, so just check size - handshake_size(input_coords[0], "hrrr_y", self.lat.shape[0]) - handshake_size(input_coords[0], "hrrr_x", self.lat.shape[1]) - handshake_coords(input_coords[0], target_input_coords, "variable") - - output_coords["time"] = input_coords[0]["time"] - output_coords["lead_time"] = ( - output_coords["lead_time"] + input_coords[0]["lead_time"] - ) - return (output_coords,) - - @classmethod - def load_default_package(cls) -> Package: - """Load assimilation package""" - package = Package( - "hf://nvidia/stormcast-v1-era5-hrrr@6c89a0877a0d6b231033d3b0d8b9828a6f833ed8", - cache_options={ - "cache_storage": Package.default_cache("stormcast"), - "same_names": True, - }, - ) - return package - - @classmethod - @check_optional_dependencies() - def load_model( - cls, - package: Package, - conditioning_data_source: DataSource | ForecastSource = GFS_FX(verbose=False), - time_tolerance: TimeTolerance = np.timedelta64(10, "m"), - sampler_steps: int = 36, - sda_std_obs: float = 0.1, - sda_gamma: float = 0.001, - ) -> AssimilationModel: - """Load assimilation from package - - Parameters - ---------- - package : Package - Package to load model from - conditioning_data_source : DataSource | ForecastSource, optional - Data source to use for global conditioning, by default GFS_FX - time_tolerance : TimeTolerance, optional - Time tolerance for filtering observations. Observations within the tolerance - window around each requested time will be used for data assimilation, - by default np.timedelta64(10, "m") - sampler_steps : int, optional - Number of diffusion sampler steps, by default 36 - sda_std_obs : float, optional - Observation noise standard deviation for DPS guidance, by default 0.1 - sda_gamma : float, optional - SDA scaling factor for DPS guidance, by default 0.001 - - Returns - ------- - AssimilationModel - Assimilation model - """ - try: - package.resolve("config.json") # HF tracking download statistics - except FileNotFoundError: - pass - - try: - OmegaConf.register_new_resolver("eval", eval) - except ValueError: - # Likely already registered so skip - pass - - # load model registry: - config = OmegaConf.load(package.resolve("model.yaml")) - - # TODO: remove strict=False once checkpoints/imports updated to new diffusion API - regression = StormCastUNet.from_checkpoint( - package.resolve("StormCastUNet.0.0.mdlus"), - strict=False, - ) - diffusion = EDMPrecond.from_checkpoint( - package.resolve("EDMPrecond.0.0.mdlus"), - strict=False, - ) - - # Load metadata: means, stds, grid - store = zarr.storage.ZipStore(package.resolve("metadata.zarr.zip"), mode="r") - metadata = xr.open_zarr(store, zarr_format=2) - - variables = metadata["variable"].values - conditioning_variables = metadata["conditioning_variable"].values - - # Expand dims and tensorify normalization buffers - means = torch.from_numpy(metadata["means"].values[None, :, None, None]) - stds = torch.from_numpy(metadata["stds"].values[None, :, None, None]) - conditioning_means = torch.from_numpy( - metadata["conditioning_means"].values[None, :, None, None] - ) - conditioning_stds = torch.from_numpy( - metadata["conditioning_stds"].values[None, :, None, None] - ) - - # Load invariants - invariants = metadata["invariants"].sel(invariant=config.data.invariants).values - invariants = torch.from_numpy(invariants).repeat(1, 1, 1, 1) - - # EDM sampler arguments - if config.sampler_args is not None: - sampler_args = config.sampler_args - else: - sampler_args = {} - - return cls( - regression, - diffusion, - means, - stds, - invariants, - variables=variables, - conditioning_means=conditioning_means, - conditioning_stds=conditioning_stds, - conditioning_data_source=conditioning_data_source, - conditioning_variables=conditioning_variables, - time_tolerance=time_tolerance, - sampler_steps=sampler_steps, - sampler_args=sampler_args, - sda_std_obs=sda_std_obs, - sda_gamma=sda_gamma, - ) - - @torch.no_grad() - def _forward( - self, - x: torch.Tensor, - conditioning: torch.Tensor, - y_obs: torch.Tensor, - mask: torch.Tensor, - ) -> torch.Tensor: - - # Scale data - if "conditioning_means" in self._buffers: - conditioning = conditioning - self.conditioning_means - if "conditioning_stds" in self._buffers: - conditioning = conditioning / self.conditioning_stds - - x = (x - self.means) / self.stds - y_obs = (y_obs - self.means) / self.stds - - # Run regression model - invariant_tensor = self.invariants.repeat(x.shape[0], 1, 1, 1) - concats = torch.cat((x, conditioning, invariant_tensor), dim=1) - - out = self.regression_model(concats) - y_obs = y_obs - out # Convert to residual obs - - # Concat for diffusion conditioning - condition = torch.cat((x, out, invariant_tensor), dim=1) - latents = torch.randn_like(x, dtype=torch.float64) - latents = self.sampler_args["sigma_max"] * latents # Initial guess - - def _conditional_diffusion(x: torch.Tensor, t: torch.Tensor) -> torch.Tensor: - return self.diffusion_model(x, t, condition=condition) - - scheduler = EDMNoiseScheduler( - sigma_min=self.sampler_args["sigma_min"], - sigma_max=self.sampler_args["sigma_max"], - rho=self.sampler_args["rho"], - ) - - guidance = DataConsistencyDPSGuidance( - mask=mask, - y=y_obs, - std_y=self.sda_std_obs, - norm=self.sda_dps_norm, - gamma=self.sda_gamma, - sigma_fn=scheduler.sigma, - alpha_fn=scheduler.alpha, - ) - score_predictor = DPSScorePredictor( - x0_predictor=_conditional_diffusion, - x0_to_score_fn=scheduler.x0_to_score, - guidances=guidance, - ) - denoiser = scheduler.get_denoiser(score_predictor=score_predictor) - - edm_out = sample( - denoiser, - latents, - noise_scheduler=scheduler, - num_steps=self.sampler_steps, - solver="edm_stochastic_heun", - solver_options={ - "S_churn": self.sampler_args["S_churn"], - "S_min": self.sampler_args["S_min"], - "S_max": self.sampler_args["S_max"], - "S_noise": self.sampler_args["S_noise"], - }, - ) - - out += edm_out - out = out * self.stds + self.means - return out - - @staticmethod - def _points_in_polygon(points: np.ndarray, polygon: np.ndarray) -> np.ndarray: - """Vectorized ray casting point-in-polygon test. - TODO: Improved this (GPU and reduce memory requirement) - make a general purpose util maybe... - - Note - ---- - For more information see the following references: - https://observablehq.com/@tmcw/understanding-point-in-polygon - - Parameters - ---------- - points : np.ndarray - Points to test, shape [n, 2] - polygon : np.ndarray - Ordered polygon vertices, shape [m, 2] - - Returns - ------- - np.ndarray - Boolean array of shape [n], True if point is inside polygon - """ - px, py = points[:, 0], points[:, 1] # [n] - vx, vy = polygon[:, 0], polygon[:, 1] # [m] - vx_next = np.roll(vx, -1) - vy_next = np.roll(vy, -1) - - # For each edge (m) and each point (n), check if horizontal ray crosses - # Broadcasting: [m, 1] vs [1, n] -> [m, n] - crosses = (vy[:, None] > py[None, :]) != (vy_next[:, None] > py[None, :]) - dvy = vy_next[:, None] - vy[:, None] - safe_dvy = np.where(dvy == 0, 1.0, dvy) # avoid division by zero; masked later - x_intersect = (vx_next[:, None] - vx[:, None]) * ( - py[None, :] - vy[:, None] - ) / safe_dvy + vx[:, None] - hits = crosses & (px[None, :] < x_intersect) - - # Odd number of crossings = inside - return (np.sum(hits, axis=0) % 2) == 1 - - def _build_obs_tensors( - self, - obs: pd.DataFrame | None, - request_time: np.datetime64, - device: torch.device, - ) -> tuple[torch.Tensor, torch.Tensor]: - n_var = len(self.variables) - n_hrrr_y, n_hrrr_x = self.lat.shape - - y_obs = torch.zeros( - 1, n_var, n_hrrr_y, n_hrrr_x, device=device, dtype=torch.float32 - ) - mask = torch.zeros( - 1, n_var, n_hrrr_y, n_hrrr_x, device=device, dtype=torch.float32 - ) - - if obs is None or len(obs) == 0: - return y_obs, mask - - # Filter observations within tolerance window - time_filtered = filter_time_range( - obs, request_time, self._tolerance, time_column="time" - ) - - if len(time_filtered) == 0: - return y_obs, mask - - # TODO, make native cudf support - # Convert to pandas if cudf for reliable string/value access - if hasattr(time_filtered, "to_pandas"): - time_filtered = time_filtered.to_pandas() - - obs_lat = time_filtered["lat"].values.astype(np.float64) - obs_lon = time_filtered["lon"].values.astype(np.float64) - obs_var = time_filtered["variable"].values - obs_val = time_filtered["observation"].values.astype(np.float32) - - # Normalize lon to 0-360 to match HRRR grid - obs_lon = np.where(obs_lon < 0, obs_lon + 360.0, obs_lon) - - # Filter observations to those inside the curvilinear grid boundary - # using ray casting point-in-polygon on the precomputed perimeter - obs_points = np.column_stack([obs_lat, obs_lon]) - in_grid = self._points_in_polygon(obs_points, self._grid_boundary) - - if not in_grid.any(): - return y_obs, mask - - obs_lat = obs_lat[in_grid] - obs_lon = obs_lon[in_grid] - obs_var = obs_var[in_grid] - obs_val = obs_val[in_grid] - - # Find nearest HRRR grid point for each observation using a KD-tree - # to avoid allocating the full [n_obs, n_grid] distance matrix. - _, nearest_flat = self._grid_tree.query(np.column_stack([obs_lat, obs_lon])) - nearest_y = nearest_flat // n_hrrr_x - nearest_x = nearest_flat % n_hrrr_x - - # Map variable names to indices - var_to_idx = {str(v): i for i, v in enumerate(self.variables)} - var_indices = np.array([var_to_idx.get(str(v), -1) for v in obs_var]) - valid = var_indices >= 0 - - # Average multiple observations that map to the same grid cell - if valid.any(): - vi = torch.tensor(var_indices[valid], device=device, dtype=torch.long) - yi = torch.tensor(nearest_y[valid], device=device, dtype=torch.long) - xi = torch.tensor(nearest_x[valid], device=device, dtype=torch.long) - vals = torch.tensor(obs_val[valid], device=device, dtype=torch.float32) - - # Flatten (vi, yi, xi) into a single linear index for scatter ops - flat_idx = vi * (n_hrrr_y * n_hrrr_x) + yi * n_hrrr_x + xi - flat_sum = torch.zeros( - n_var * n_hrrr_y * n_hrrr_x, device=device, dtype=torch.float32 - ) - flat_cnt = torch.zeros_like(flat_sum) - flat_sum.scatter_add_(0, flat_idx, vals) - flat_cnt.scatter_add_(0, flat_idx, torch.ones_like(vals)) - - occupied = flat_cnt > 0 - flat_avg = torch.where(occupied, flat_sum / flat_cnt, flat_sum) - y_obs[0] = flat_avg.view(n_var, n_hrrr_y, n_hrrr_x) - mask[0] = occupied.float().view(n_var, n_hrrr_y, n_hrrr_x) - - return y_obs, mask - - def _fetch_and_interp_conditioning(self, x: xr.DataArray) -> xr.DataArray: - """Fetch global conditioning data and interpolate to HRRR curvilinear grid. - - Parameters - ---------- - x : xr.DataArray - Input state DataArray with time and lead_time coordinates - - Returns - ------- - xr.DataArray - Conditioning data interpolated onto the HRRR grid - """ - device = self.device - - if self.conditioning_data_source is None: - raise RuntimeError( - "StormCast has been called without initializing the model's conditioning_data_source" - ) - - c: xr.DataArray = fetch_data( - self.conditioning_data_source, - time=x.coords["time"].data, - variable=self.conditioning_variables, - lead_time=x.coords["lead_time"].data, - device=self.device, - legacy=False, - ) - - # Interpolate conditioning from regular lat/lon grid to HRRR curvilinear grid - if cp is not None and isinstance(c.data, cp.ndarray): - # GPU path: bilinear interpolation using cupy, data stays on GPU - with cp.cuda.Device(device.index or 0): - data = c.data - src_lat = cp.asarray(c.coords["lat"].values, dtype=cp.float64) - src_lon = cp.asarray(c.coords["lon"].values, dtype=cp.float64) - - target_lat_cp = cp.asarray(self.lat, dtype=cp.float64) - target_lon_cp = cp.asarray(self.lon, dtype=cp.float64) - - # Ensure ascending order for searchsorted (latitude is - # commonly descending in weather data, e.g. 90 -> -90) - if src_lat[-1] < src_lat[0]: - src_lat = src_lat[::-1] - data = data[..., ::-1, :] - if src_lon[-1] < src_lon[0]: - src_lon = src_lon[::-1] - data = data[..., :, ::-1] - - # Compute fractional indices via searchsorted (handles - # non-uniform spacing), src_lat and src_lon needs to be acending - lat_idx = cp.searchsorted(src_lat, target_lat_cp.ravel()) - 1 - lat_idx = cp.clip(lat_idx, 0, len(src_lat) - 2) - lat_idx = lat_idx.reshape(target_lat_cp.shape) - - lon_idx = cp.searchsorted(src_lon, target_lon_cp.ravel()) - 1 - lon_idx = cp.clip(lon_idx, 0, len(src_lon) - 2) - lon_idx = lon_idx.reshape(target_lon_cp.shape) - - lat0 = lat_idx - lon0 = lon_idx - lat1 = lat0 + 1 - lon1 = lon0 + 1 - - # Fractional weights between grid cells - wlat = (target_lat_cp - src_lat[lat0]) / (src_lat[lat1] - src_lat[lat0]) - wlon = (target_lon_cp - src_lon[lon0]) / (src_lon[lon1] - src_lon[lon0]) - wlat = cp.clip(wlat, 0.0, 1.0) - wlon = cp.clip(wlon, 0.0, 1.0) - - interp_data = ( - data[..., lat0, lon0] * (1 - wlat) * (1 - wlon) - + data[..., lat0, lon1] * (1 - wlat) * wlon - + data[..., lat1, lon0] * wlat * (1 - wlon) - + data[..., lat1, lon1] * wlat * wlon - ) - - c = xr.DataArray( - data=interp_data, - dims=["time", "lead_time", "variable", "hrrr_y", "hrrr_x"], - coords={ - "time": c.coords["time"], - "lead_time": c.coords["lead_time"], - "variable": c.coords["variable"], - "hrrr_y": self.hrrr_y, - "hrrr_x": self.hrrr_x, - "lat": (["hrrr_y", "hrrr_x"], self.lat), - "lon": (["hrrr_y", "hrrr_x"], self.lon), - }, - ) - else: - # CPU path: use xarray's built-in interpolation - target_lat = xr.DataArray(self.lat, dims=["hrrr_y", "hrrr_x"]) - target_lon = xr.DataArray(self.lon, dims=["hrrr_y", "hrrr_x"]) - c = c.interp(lat=target_lat, lon=target_lon, method="linear") - c = c.assign_coords( - hrrr_y=("hrrr_y", self.hrrr_y), - hrrr_x=("hrrr_x", self.hrrr_x), - lat=(["hrrr_y", "hrrr_x"], self.lat), - lon=(["hrrr_y", "hrrr_x"], self.lon), - ) - - return c - - def _to_output_dataarray( - self, - x_tensor: torch.Tensor, - output_coords: tuple[CoordSystem], - ) -> xr.DataArray: - """Convert output tensor to xr.DataArray with HRRR grid coordinates. - - Parameters - ---------- - x_tensor : torch.Tensor - Output tensor from _forward - output_coords : tuple[CoordSystem] - Output coordinate system from output_coords() - - Returns - ------- - xr.DataArray - Output DataArray with cupy backend on GPU or numpy on CPU - """ - device = self.device - (oc,) = output_coords - if device.type == "cuda" and cp is not None: - with cp.cuda.Device(device.index or 0): - out_data = cp.asarray(x_tensor.detach()) - else: - out_data = x_tensor.detach().cpu().numpy() - - return xr.DataArray( - data=out_data, - dims=list(oc.keys()), - coords={ - k: ((["hrrr_y", "hrrr_x"], v) if k in ("lat", "lon") else v) - for k, v in oc.items() - } - | { - "lat": (["hrrr_y", "hrrr_x"], self.lat), - "lon": (["hrrr_y", "hrrr_x"], self.lon), - }, - ) - - # NOTE: @torch.inference_mode() is intentionally omitted here. - # DPS guidance requires gradient computation through the denoiser for - # the score correction step; inference_mode would disable those gradients. - def __call__( - self, - x: xr.DataArray, - obs: pd.DataFrame | None, - ) -> xr.DataArray: - """Runs assimilation model 1 step. - - Parameters - ---------- - x : xr.DataArray - Input state on the HRRR curvilinear grid - obs : pd.DataFrame | None - Sparse observations DataFrame, or None for no assimilation - - Returns - ------- - xr.DataArray - Output state one time-step into the future - - Raises - ------ - RuntimeError - If conditioning data source is not initialized - """ - if self.conditioning_data_source is None: - raise RuntimeError( - "StormCast has been called without initializing the model's conditioning_data_source" - ) - - device = self.device - c = self._fetch_and_interp_conditioning(x) - - x_coords = OrderedDict({dim: x.coords[dim].values for dim in x.dims}) - output_coords = self.output_coords((x_coords,)) - - x_tensor = torch.as_tensor(x.data) - c_tensor = torch.as_tensor(c.data) - - for j, t in enumerate(x.coords["time"].data): - obs_time = t + output_coords[0]["lead_time"][0] - y_obs, mask = self._build_obs_tensors(obs, obs_time, device) - x_tensor[j, :] = self._forward(x_tensor[j, :], c_tensor[j, :], y_obs, mask) - - return self._to_output_dataarray(x_tensor, output_coords) - - def create_generator( - self, x: xr.DataArray - ) -> Generator[xr.DataArray, pd.DataFrame | None, None]: - """Creates a generator for iterative forecast with data assimilation. - - The generator yields forecast states and receives observation DataFrames - via ``send()``. At each step, conditioning data is fetched, observations - are mapped to the HRRR grid, and the diffusion model produces the next - forecast step. - - Parameters - ---------- - x : xr.DataArray - Initial state on the HRRR curvilinear grid - - Yields - ------ - xr.DataArray - Forecast state at each time step - - Receives - -------- - pd.DataFrame | None - Observations sent via ``generator.send()``. Pass ``None`` for - steps without assimilation. - - Example - ------- - >>> gen = model.create_generator(x0) - >>> state = next(gen) # yields initial state x0 - >>> state = gen.send(obs_df) # step 1 with observations - >>> state = gen.send(None) # step 2 without observations - """ - if self.conditioning_data_source is None: - raise RuntimeError( - "StormCast has been called without initializing the model's " - "conditioning_data_source" - ) - - # Yield the initial state so the caller can inspect it - obs = yield x - - try: - while True: - # Fetch and interpolate conditioning onto HRRR grid - c = self._fetch_and_interp_conditioning(x) - - # Compute output coords (advances lead_time by 1h) - x_coords = OrderedDict({dim: x.coords[dim].values for dim in x.dims}) - output_coords = self.output_coords((x_coords,)) - - # Zero-copy conversion to torch tensors - x_tensor = torch.as_tensor(x.data) - c_tensor = torch.as_tensor(c.data) - - # Run forward with observations - for j, t in enumerate(x.coords["time"].data): - obs_time = t + output_coords[0]["lead_time"][0] - y_obs, mask = self._build_obs_tensors(obs, obs_time, self.device) - x_tensor[j] = self._forward(x_tensor[j], c_tensor[j], y_obs, mask) - - # Build output DataArray and use as next input - x = self._to_output_dataarray(x_tensor, output_coords) - - # Yield forecast result and wait for next observations - obs = yield x - - except GeneratorExit: - logger.info("StormCast SDA clean up") diff --git a/earth2studio/models/da/utils.py b/earth2studio/models/da/utils.py deleted file mode 100644 index c0012e195..000000000 --- a/earth2studio/models/da/utils.py +++ /dev/null @@ -1,167 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. -from __future__ import annotations - -from datetime import datetime - -import numpy as np -import pandas as pd -import torch -from loguru import logger - -try: - import cudf -except ImportError: - cudf = None - - -def validate_observation_fields( - observation: pd.DataFrame | cudf.DataFrame, required_fields: list[str] -) -> None: - """Validate that required fields are present as columns in the DataFrame. - - Parameters - ---------- - observation : pd.DataFrame | cudf.DataFrame - DataFrame observation to validate - required_fields : list[str] - List of required field/column names - - Raises - ------ - ValueError - If any required fields are missing from the DataFrame columns - """ - missing_fields = [ - field for field in required_fields if field not in observation.columns - ] - if missing_fields: - raise ValueError( - f"DataFrame missing required fields: {missing_fields}. " - f"Available columns: {list(observation.columns)}" - ) - - -def filter_time_range( - df: pd.DataFrame | cudf.DataFrame, - request_time: np.datetime64 | datetime | str, - tolerance: tuple[np.timedelta64, np.timedelta64], - time_column: str = "time", -) -> pd.DataFrame | cudf.DataFrame: - """Filter DataFrame rows where time column is within the specified tolerance range. - - Filters the DataFrame to include only rows where the time column value is within - [request_time + lower_bound, request_time + upper_bound]. Ensures the time column - is of dtype datetime64[ns]. - - Parameters - ---------- - df : pd.DataFrame | cudf.DataFrame - DataFrame to filter. Can be pandas or cudf DataFrame. - request_time : np.datetime64 | datetime | str - Reference time for filtering. Observations within the tolerance window - around this time will be included. - tolerance : tuple[np.timedelta64, np.timedelta64] - Tuple of (lower_bound, upper_bound) time deltas defining the tolerance window. - time_column : str, optional - Name of the time column in the DataFrame, by default "time" - - Returns - ------- - pd.DataFrame | cudf.DataFrame - Filtered DataFrame containing only rows within the time tolerance range. - Returns the same DataFrame type as the input (pandas or cudf). - - Raises - ------ - KeyError - If the time_column is not present in the DataFrame - """ - if time_column not in df.columns: - raise KeyError( - f"Time column '{time_column}' not found in DataFrame. " - f"Available columns: {list(df.columns)}" - ) - - request_time_ns = np.datetime64(request_time, "ns") - - # Ensure time column is datetime64[ns] - time_series = df[time_column] - if time_series.dtype != "datetime64[ns]": - df = df.copy() - # Use cudf methods if it's a cudf DataFrame, otherwise use pandas - if cudf is not None and isinstance(df, cudf.DataFrame): - df[time_column] = cudf.to_datetime(time_series).astype("datetime64[ns]") - else: - df[time_column] = pd.to_datetime(time_series).astype("datetime64[ns]") - - # Calculate time bounds - lower_bound, upper_bound = tolerance - time_min = request_time_ns + lower_bound - time_max = request_time_ns + upper_bound - - time_mask = (df[time_column] >= time_min) & (df[time_column] <= time_max) - return df[time_mask] - - -def dfseries_to_torch( - series: pd.Series | cudf.Series, - dtype: torch.dtype = torch.float32, - device: torch.device | str = "cpu", -) -> torch.Tensor: - """Convert a DataFrame series to a torch tensor with zero-copy for cudf. - - If the series is from a cudf DataFrame, uses dlpack for zero-copy transfer. - If the series is from pandas but target device is GPU, transfers the data - and warns that cudf is not being used. - - Parameters - ---------- - series : pd.Series | cudf.Series - Series to convert to torch tensor. Can be pandas or cudf Series. - dtype : torch.dtype, optional - Desired dtype for the tensor, by default torch.float32 - device : torch.device | str, optional - Target device for the tensor, by default "cpu" - - Returns - ------- - torch.Tensor - Torch tensor with the series data on the specified device - - Raises - ------ - ImportError - If cudf is required but not available - """ - device = torch.device(device) - - # Check if series is from cudf - if cudf is not None and isinstance(series, cudf.Series): - # Use dlpack for zero-copy transfer from cudf to torch - return torch.from_dlpack(series.values).to(dtype=dtype, device=device) - - # Handle pandas Series - if device.type == "cuda": - # Warn that cudf is not being used for GPU transfer - logger.warning( - "Converting pandas Series to GPU tensor. Consider installing cudf " - "for zero-copy transfer and better performance." - ) - return torch.tensor(series.values, dtype=dtype, device=device) - - # CPU case - standard conversion - return torch.tensor(series.values, dtype=dtype, device=device) diff --git a/earth2studio/models/dx/cbottle_sr.py b/earth2studio/models/dx/cbottle_sr.py index b82321d2e..3edcb0c71 100644 --- a/earth2studio/models/dx/cbottle_sr.py +++ b/earth2studio/models/dx/cbottle_sr.py @@ -388,6 +388,7 @@ def load_model( sigma_max: int = 800, seed: int | None = None, distilled_model: bool = False, + device: str = "cpu", ) -> DiagnosticModel: """Load diagnostic model from package @@ -412,6 +413,8 @@ def load_model( distilled_model : bool, optional Whether to use the distilled model, If True, the distilled helper is used, enabling generation with fewer sampler steps, by default False + device : str + Device to load model onto, by default cpu Returns ------- @@ -434,10 +437,10 @@ def load_model( if distilled_model: sr_model = model_cls.from_pretrained( - state_path, window_function="KBD", window_alpha=1.0 + state_path, window_function="KBD", window_alpha=1.0, device=device ) else: - sr_model = model_cls.from_pretrained(state_path) + sr_model = model_cls.from_pretrained(state_path, device=device) return cls( sr_model, diff --git a/earth2studio/models/dx/corrdiff.py b/earth2studio/models/dx/corrdiff.py index 9186714f3..0eff57053 100644 --- a/earth2studio/models/dx/corrdiff.py +++ b/earth2studio/models/dx/corrdiff.py @@ -45,28 +45,21 @@ from earth2studio.utils.type import CoordSystem try: - from physicsnemo import Module as PhysicsNemoModule - from physicsnemo.diffusion.generate.legacy_generate import ( + from physicsnemo.models import Module as PhysicsNemoModule + from physicsnemo.utils.corrdiff import ( diffusion_step, regression_step, ) - from physicsnemo.diffusion.preconditioners.legacy import EDMPrecondSR - from physicsnemo.diffusion.samplers.legacy_deterministic_sampler import ( + from physicsnemo.utils.generative import ( + StackedRandomGenerator, deterministic_sampler, - ) - from physicsnemo.diffusion.samplers.legacy_stochastic_sampler import ( stochastic_sampler, ) - from physicsnemo.diffusion.utils import StackedRandomGenerator - from physicsnemo.models.diffusion_unets import UNet except ImportError: OptionalDependencyFailure("corrdiff") PhysicsNemoModule = None StackedRandomGenerator = None deterministic_sampler = None - stochastic_sampler = None - EDMPrecondSR = None - UNet = None @check_optional_dependencies() @@ -1401,7 +1394,7 @@ def load_model(cls, package: Package, device: str | None = None) -> DiagnosticMo with zipfile.ZipFile(checkpoint_zip, "r") as zip_ref: zip_ref.extractall(checkpoint_zip.parent) - residual = EDMPrecondSR.from_checkpoint( + residual = PhysicsNemoModule.from_checkpoint( str( checkpoint_zip.parent / Path("corrdiff_inference_package/checkpoints/diffusion.mdlus") @@ -1414,7 +1407,7 @@ def load_model(cls, package: Package, device: str | None = None) -> DiagnosticMo residual = residual.to(device) residual = residual.to(memory_format=torch.channels_last) - regression = UNet.from_checkpoint( + regression = PhysicsNemoModule.from_checkpoint( str( checkpoint_zip.parent / Path("corrdiff_inference_package/checkpoints/regression.mdlus") diff --git a/earth2studio/models/dx/corrdiff_cmip6.py b/earth2studio/models/dx/corrdiff_cmip6.py index 1e83cd9c2..e8bbcabee 100644 --- a/earth2studio/models/dx/corrdiff_cmip6.py +++ b/earth2studio/models/dx/corrdiff_cmip6.py @@ -37,20 +37,14 @@ from earth2studio.utils.type import CoordSystem, LeadTimeArray try: - from physicsnemo.diffusion.generate.legacy_generate import ( - diffusion_step, - regression_step, - ) - from physicsnemo.diffusion.preconditioners.legacy import EDMPrecondSuperResolution - from physicsnemo.models.diffusion_unets import UNet + from physicsnemo.models import Module as PhysicsNemoModule + from physicsnemo.utils.corrdiff import diffusion_step, regression_step from physicsnemo.utils.zenith_angle import cos_zenith_angle except ImportError: # pragma: no cover OptionalDependencyFailure("corrdiff") diffusion_step = None # type: ignore[assignment] regression_step = None # type: ignore[assignment] cos_zenith_angle = None # type: ignore[assignment] - UNet = None # type: ignore[assignment] - EDMPrecondSuperResolution = None # type: ignore[assignment] class CorrDiffCMIP6(CorrDiff): @@ -436,14 +430,16 @@ def load_model( # Load the base CorrDiff model from the package. residual = ( - EDMPrecondSuperResolution.from_checkpoint( + PhysicsNemoModule.from_checkpoint( package.resolve("diffusion.mdlus"), strict=False ) .eval() .to(device) ) regression = ( - UNet.from_checkpoint(package.resolve("regression.mdlus"), strict=False) + PhysicsNemoModule.from_checkpoint( + package.resolve("regression.mdlus"), strict=False + ) .eval() .to(device) ) diff --git a/earth2studio/models/nn/afno_ssrd.py b/earth2studio/models/nn/afno_ssrd.py index eba9e7aa7..5b2e180bb 100644 --- a/earth2studio/models/nn/afno_ssrd.py +++ b/earth2studio/models/nn/afno_ssrd.py @@ -18,8 +18,8 @@ import physicsnemo # noqa: F401 for docs import torch import torch.nn as nn -from physicsnemo import Module from physicsnemo.models.afno.afno import Block +from physicsnemo.models.module import Module Tensor = torch.Tensor diff --git a/earth2studio/models/nn/atlas.py b/earth2studio/models/nn/atlas.py index 671bebb7a..3346d3cbf 100644 --- a/earth2studio/models/nn/atlas.py +++ b/earth2studio/models/nn/atlas.py @@ -45,9 +45,7 @@ @cache def get_isht(nlat, nlon, grid="equiangular", norm="ortho", device=None): - return InverseRealSHT( - nlat, nlon, lmax=nlat, mmax=nlon // 2 + 1, grid=grid, norm=norm - ).to(device=device) + return InverseRealSHT(nlat, nlon, grid=grid, norm=norm).to(device=device) def spherical_white_noise(shape, scale=3.56, device=None, studentt_deg=None): @@ -57,21 +55,19 @@ def spherical_white_noise(shape, scale=3.56, device=None, studentt_deg=None): if len(shape) < 2: raise ValueError(f"Shape must have at least 2 dimensions, got {shape}") - isht = get_isht(shape[-2], shape[-1], device=device) - lmax = isht.lmax - mmax = isht.mmax - if studentt_deg is None: - noise = torch.randn(shape[0:-2] + [lmax, mmax] + [2], device=device) + noise = torch.randn(shape[0:-1] + [(shape[-1] // 2) + 1] + [2], device=device) else: dist = torch.distributions.studentT.StudentT(studentt_deg) - noise = dist.sample(shape[0:-2] + [lmax, mmax] + [2]).to(device) + noise = dist.sample(shape[0:-1] + [(shape[-1] // 2) + 1] + [2]).to(device) noise = (1.0 / math.sqrt(float(shape[-1] * shape[-2]))) * scale * noise noise = torch.view_as_complex(noise) noise = torch.tril(noise) + isht = get_isht(shape[-2], shape[-1], device=device) + with torch.amp.autocast("cuda", enabled=False): return isht(noise) @@ -1309,9 +1305,12 @@ def forward( # Conditioning t = self.t_embedder(t) + # print(t.shape) + if self.embedding_table is not None and label is not None: t = t + self.embedding_table(label) + # print(t.shape) # Apply DiT blocks for j, block in enumerate(self.blocks): if j >= self.checkpoint: diff --git a/earth2studio/models/nn/stormscope_util.py b/earth2studio/models/nn/stormscope_util.py index 4a9c75f5a..729005397 100644 --- a/earth2studio/models/nn/stormscope_util.py +++ b/earth2studio/models/nn/stormscope_util.py @@ -18,7 +18,6 @@ import torch import torch.nn as nn -from loguru import logger from earth2studio.utils.imports import ( OptionalDependencyFailure, @@ -26,7 +25,7 @@ ) try: - from physicsnemo.models import DiT as PNM_DiT + from physicsnemo.experimental.models.dit.dit import DiT as PNM_DiT except ImportError: OptionalDependencyFailure("stormscope") PNM_DiT = None # type: ignore[assignment] @@ -79,13 +78,13 @@ def __init__( self.p_min = p_min self.x_offset = x_offset self.slope = slope - logger.debug(f"sigma_max_dropout: {self.sigma_max_dropout}") - logger.debug(f"sigma_min_dropout: {self.sigma_min_dropout}") - logger.debug(f"dropout_function_type: {self.dropout_function_type}") - logger.debug(f"p_max: {self.p_max}") - logger.debug(f"p_min: {self.p_min}") - logger.debug(f"x_offset: {self.x_offset}") - logger.debug(f"slope: {self.slope}") + print(f"sigma_max_dropout: {self.sigma_max_dropout}") + print(f"sigma_min_dropout: {self.sigma_min_dropout}") + print(f"dropout_function_type: {self.dropout_function_type}") + print(f"p_max: {self.p_max}") + print(f"p_min: {self.p_min}") + print(f"x_offset: {self.x_offset}") + print(f"slope: {self.slope}") else: self.noise_dependent_dropout = False diff --git a/earth2studio/models/px/aifsens.py b/earth2studio/models/px/aifsens.py index 3168343e9..4f1f48b8e 100644 --- a/earth2studio/models/px/aifsens.py +++ b/earth2studio/models/px/aifsens.py @@ -818,8 +818,8 @@ def _fill_input(self, x: torch.Tensor, coords: CoordSystem) -> torch.Tensor: batch, time, lead, _, height, width = x.shape - # Prepare output tensor with VARIABLE dimension (zeros to avoid uninitialised memory) - out = torch.zeros( + # Prepare empty output tensor with VARIABLE dimension + out = torch.empty( (batch, time, lead, len(VARIABLES), height, width), device=x.device, ) @@ -848,7 +848,6 @@ def _fill_input(self, x: torch.Tensor, coords: CoordSystem) -> torch.Tensor: keep = torch.isin( all_indices, self.model.data_indices.data.output.forcing, invert=True ) - out = out[:, :, :, keep, ...] # Update coordinates with remaining variable names diff --git a/earth2studio/models/px/cbottle_video.py b/earth2studio/models/px/cbottle_video.py index 4453fe0ea..93b12d7a2 100644 --- a/earth2studio/models/px/cbottle_video.py +++ b/earth2studio/models/px/cbottle_video.py @@ -16,7 +16,7 @@ from collections import OrderedDict from collections.abc import Generator, Iterator -from datetime import datetime, timezone +from datetime import datetime from enum import IntEnum, StrEnum import numpy as np @@ -376,20 +376,14 @@ def reorder(x: torch.Tensor) -> torch.Tensor: # Set up time tensors times0 = [ - datetime.fromtimestamp( - t.astype("datetime64[s]").astype(int), tz=timezone.utc - ) + datetime.fromtimestamp(t.astype("datetime64[s]").astype(int)) for t in times.reshape(-1) ] second_of_day = np.array( [(t.hour * 3600) + (t.minute * 60) + t.second for t in times0] ).reshape(times.shape) day_of_year = np.array( - [ - (t - datetime(t.year, 1, 1, tzinfo=timezone.utc)).total_seconds() - / (86400.0) - for t in times0 - ] + [(t - datetime(t.year, 1, 1)).total_seconds() / (86400.0) for t in times0] ).reshape(times.shape) second_of_day = torch.tensor(second_of_day.astype(np.float32), device=device) day_of_year = torch.tensor(day_of_year.astype(np.float32), device=device) diff --git a/earth2studio/models/px/dlesym.py b/earth2studio/models/px/dlesym.py index bcdbbb4d1..8c4be9b29 100644 --- a/earth2studio/models/px/dlesym.py +++ b/earth2studio/models/px/dlesym.py @@ -36,7 +36,7 @@ try: import earth2grid from omegaconf import OmegaConf - from physicsnemo import Module + from physicsnemo.models import Module from physicsnemo.utils.insolation import insolation except ImportError: OptionalDependencyFailure("dlesym") diff --git a/earth2studio/models/px/fcn.py b/earth2studio/models/px/fcn.py index e25d810e1..17588ec7c 100644 --- a/earth2studio/models/px/fcn.py +++ b/earth2studio/models/px/fcn.py @@ -14,8 +14,10 @@ # See the License for the specific language governing permissions and # limitations under the License. +import zipfile from collections import OrderedDict from collections.abc import Generator, Iterator +from pathlib import Path import numpy as np import torch @@ -79,7 +81,7 @@ class FCN(torch.nn.Module, AutoModelMixin, PrognosticMixin): paper. For additional information see the following resources: - https://arxiv.org/abs/2202.11214 - - https://huggingface.co/nvidia/fourcastnet1 + - https://catalog.ngc.nvidia.com/orgs/nvidia/teams/modulus/models/modulus_fcn Parameters ---------- @@ -175,7 +177,7 @@ def __str__( def load_default_package(cls) -> Package: """Load prognostic package""" return Package( - "hf://nvidia/fourcastnet1@c67a63995f6c8e0e557eb3d791f32f437e9b02d5", + "ngc://models/nvidia/modulus/modulus_fcn@v0.2", cache_options={ "cache_storage": Package.default_cache("fcn"), "same_names": True, @@ -189,16 +191,20 @@ def load_model( package: Package, ) -> PrognosticModel: """Load prognostic from package""" - try: - package.resolve("config.json") # HF tracking download statistics - except FileNotFoundError: - pass + fcn_zip = Path(package.resolve("fcn.zip")) + # Have to manually unzip here. Should not zip checkpoints in the future + with zipfile.ZipFile(fcn_zip, "r") as zip_ref: + zip_ref.extractall(fcn_zip.parent) - model = AFNO.from_checkpoint(package.resolve("fcn.mdlus")) + model = AFNO.from_checkpoint(str(fcn_zip.parent / Path("fcn/fcn.mdlus"))) model.eval() - local_center = torch.Tensor(np.load(package.resolve("global_means.npy"))) - local_std = torch.Tensor(np.load(package.resolve("global_stds.npy"))) + local_center = torch.Tensor( + np.load(str(fcn_zip.parent / Path("fcn/global_means.npy"))) + ) + local_std = torch.Tensor( + np.load(str(fcn_zip.parent / Path("fcn/global_stds.npy"))) + ) return cls(model, center=local_center, scale=local_std) @torch.inference_mode() diff --git a/earth2studio/models/px/graphcast_operational.py b/earth2studio/models/px/graphcast_operational.py index e29881d31..cd036fa25 100644 --- a/earth2studio/models/px/graphcast_operational.py +++ b/earth2studio/models/px/graphcast_operational.py @@ -237,7 +237,7 @@ def __init__( ] ), "variable": np.array(VARIABLES), - "lat": np.linspace(90, -90, 721, endpoint=True), + "lat": np.linspace(-90, 90, 721, endpoint=True), "lon": np.linspace(0, 360, 1440, endpoint=False), } ) @@ -248,7 +248,7 @@ def __init__( "time": np.empty(0), "lead_time": np.array([np.timedelta64(6, "h")]), "variable": np.array(VARIABLES + ["tp06"]), - "lat": np.linspace(90, -90, 721, endpoint=True), + "lat": np.linspace(-90, 90, 721, endpoint=True), "lon": np.linspace(0, 360, 1440, endpoint=False), } ) @@ -456,7 +456,7 @@ def _default_generator( # Get device device = x.device - # first batch has 2 times (lead_times) + # first batch has 2 times coords_out["lead_time"] = coords["lead_time"][1:] # Add on zeros slice for tp06 out = torch.cat( @@ -469,11 +469,8 @@ def _default_generator( # Forward is identity operator coords = self.output_coords(coords) - # Get next prediction from all time iterators - results = [ - self.iterator_result_to_tensor(next(it)) for it in self.iterators - ] - x = torch.cat(results, dim=1) if len(results) > 1 else results[0] + # Get next prediction + x = self.iterator_result_to_tensor(next(self.iterator)) # Rear hook x, coords = self.rear_hook(x, coords) @@ -506,37 +503,24 @@ def create_iterator( """ with jax.default_device(self.get_jax_device_from_tensor(x)): - # Create a separate JAX iterator for each init time - # (rollout._get_next_inputs only supports single time) - time_dim = list(coords.keys()).index("time") - n_times = len(coords["time"]) - self.iterators = [] - - for t in range(n_times): - x_t = x.narrow(time_dim, t, 1) - coords_t = coords.copy() - coords_t["time"] = coords["time"][t : t + 1] - - batch, target_lead_times = self.from_dataarray_to_dataset( - xr.DataArray(x_t.cpu(), coords=coords_t), 6 - ) + batch, target_lead_times = self.from_dataarray_to_dataset( + xr.DataArray(x.cpu(), coords=coords), 6 + ) - inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( - batch, - target_lead_times=target_lead_times, - **dataclasses.asdict(self.ckpt.task_config), - ) + inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( + batch, + target_lead_times=target_lead_times, + **dataclasses.asdict(self.ckpt.task_config), + ) - self.iterators.append( - self._chunked_prediction_generator( - predictor_fn=self.run_forward, - rng=self.prng_key, - inputs=inputs, - targets_template=targets * np.nan, - batch=batch, - forcings=forcings, - ) - ) + self.iterator = self._chunked_prediction_generator( + predictor_fn=self.run_forward, + rng=self.prng_key, + inputs=inputs, + targets_template=targets * np.nan, + batch=batch, + forcings=forcings, + ) yield from self._default_generator(x, coords) @@ -577,9 +561,7 @@ def iterator_result_to_tensor(self, dataset: xr.Dataset) -> torch.Tensor: .T.transpose(..., "time", "lead_time", "variable", "lat", "lon") ) - out = torch.from_numpy(dataarray.to_numpy().copy()) - out = out.flip(-2) # Flip lat from ascending (-90->90, JAX native) to (90->-90) - return out + return torch.from_numpy(dataarray.to_numpy().copy()) @staticmethod def get_jax_device_from_tensor(x: torch.Tensor) -> "jax.Device": @@ -618,35 +600,24 @@ def __call__( # Map lat and lon if needed x, coords = map_coords(x, coords, self.input_coords()) - # Loop over time dimension (JAX model supports single init time only) - time_dim = list(coords.keys()).index("time") - n_times = len(coords["time"]) - results = [] - for t in range(n_times): - x_t = x.narrow(time_dim, t, 1) - coords_t = coords.copy() - coords_t["time"] = coords["time"][t : t + 1] - - data, target_lead_times = self.from_dataarray_to_dataset( - xr.DataArray(x_t.cpu(), coords=coords_t), 6 - ) - - inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( - data, - target_lead_times=target_lead_times, - **dataclasses.asdict(self.ckpt.task_config), - ) + data, target_lead_times = self.from_dataarray_to_dataset( + xr.DataArray(x.cpu(), coords=coords), 6 + ) - predictions = rollout.chunked_prediction( - self.run_forward, - rng=self.prng_key, - inputs=inputs, - targets_template=targets * np.nan, - forcings=forcings, - ) - results.append(self.iterator_result_to_tensor(predictions)) + inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( + data, + target_lead_times=target_lead_times, + **dataclasses.asdict(self.ckpt.task_config), + ) - out = torch.cat(results, dim=1) if n_times > 1 else results[0] + predictions = rollout.chunked_prediction( + self.run_forward, + rng=self.prng_key, + inputs=inputs, + targets_template=targets * np.nan, + forcings=forcings, + ) + out = self.iterator_result_to_tensor(predictions) output_coords = self.output_coords(coords) # Convert to device diff --git a/earth2studio/models/px/graphcast_small.py b/earth2studio/models/px/graphcast_small.py index 0afe99bdf..0650df74d 100644 --- a/earth2studio/models/px/graphcast_small.py +++ b/earth2studio/models/px/graphcast_small.py @@ -169,7 +169,7 @@ class GraphCastSmall(torch.nn.Module, AutoModelMixin, PrognosticMixin): A smaller, low-resolution version of GraphCast (1 degree resolution, 13 pressure levels and a smaller mesh), trained on ERA5 data from 1979 to 2015. This model is useful for running with lower memory and compute constraints while maintaining good - forecast skill. The model operates on a 1-degree lat-lon grid (pole including) + forecast skill. The model operates on a 1-degree lat-lon grid (south-pole including) equirectangular grid with 85 variables including: - Surface variables (2m temperature, 10m winds, etc.) @@ -238,7 +238,7 @@ def __init__( ] ), "variable": np.array(VARIABLES), - "lat": np.linspace(90, -90, 181, endpoint=True), + "lat": np.linspace(-90, 90, 181, endpoint=True), "lon": np.linspace(0, 360, 360, endpoint=False), } ) @@ -249,7 +249,7 @@ def __init__( "time": np.empty(0), "lead_time": np.array([np.timedelta64(6, "h")]), "variable": np.array(VARIABLES), - "lat": np.linspace(90, -90, 181, endpoint=True), + "lat": np.linspace(-90, 90, 181, endpoint=True), "lon": np.linspace(0, 360, 360, endpoint=False), } ) @@ -457,7 +457,7 @@ def _default_generator( # Get device device = x.device - # first batch has 2 times (lead_times) + # first batch has 2 times coords_out = coords.copy() coords_out["lead_time"] = coords["lead_time"][1:] yield x[:, :, 1:, ...], coords_out @@ -467,11 +467,8 @@ def _default_generator( # Forward is identity operator coords = self.output_coords(coords) - # Get next prediction from all time iterators - results = [ - self.iterator_result_to_tensor(next(it)) for it in self.iterators - ] - x = torch.cat(results, dim=1) if len(results) > 1 else results[0] + # Get next prediction + x = self.iterator_result_to_tensor(next(self.iterator)) # Rear hook x, coords = self.rear_hook(x, coords) @@ -504,37 +501,24 @@ def create_iterator( """ with jax.default_device(self.get_jax_device_from_tensor(x)): - # Create a separate JAX iterator for each init time - # (rollout._get_next_inputs only supports single time) - time_dim = list(coords.keys()).index("time") - n_times = len(coords["time"]) - self.iterators = [] - - for t in range(n_times): - x_t = x.narrow(time_dim, t, 1) - coords_t = coords.copy() - coords_t["time"] = coords["time"][t : t + 1] - - batch, target_lead_times = self.from_dataarray_to_dataset( - xr.DataArray(x_t.cpu(), coords=coords_t), 6 - ) + batch, target_lead_times = self.from_dataarray_to_dataset( + xr.DataArray(x.cpu(), coords=coords), 6 + ) - inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( - batch, - target_lead_times=target_lead_times, - **dataclasses.asdict(self.ckpt.task_config), - ) + inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( + batch, + target_lead_times=target_lead_times, + **dataclasses.asdict(self.ckpt.task_config), + ) - self.iterators.append( - self._chunked_prediction_generator( - predictor_fn=self.run_forward, - rng=self.prng_key, - inputs=inputs, - targets_template=targets * np.nan, - batch=batch, - forcings=forcings, - ) - ) + self.iterator = self._chunked_prediction_generator( + predictor_fn=self.run_forward, + rng=self.prng_key, + inputs=inputs, + targets_template=targets * np.nan, + batch=batch, + forcings=forcings, + ) yield from self._default_generator(x, coords) @@ -575,9 +559,7 @@ def iterator_result_to_tensor(self, dataset: xr.Dataset) -> torch.Tensor: .T.transpose(..., "time", "lead_time", "variable", "lat", "lon") ) - out = torch.from_numpy(dataarray.to_numpy().copy()) - out = out.flip(-2) # Flip lat from ascending (-90->90, JAX native) to (90->-90) - return out + return torch.from_numpy(dataarray.to_numpy().copy()) @staticmethod def get_jax_device_from_tensor(x: torch.Tensor) -> "jax.Device": @@ -616,35 +598,24 @@ def __call__( # Map lat and lon if needed x, coords = map_coords(x, coords, self.input_coords()) - # Loop over time dimension (JAX model supports single init time only) - time_dim = list(coords.keys()).index("time") - n_times = len(coords["time"]) - results = [] - for t in range(n_times): - x_t = x.narrow(time_dim, t, 1) - coords_t = coords.copy() - coords_t["time"] = coords["time"][t : t + 1] - - data, target_lead_times = self.from_dataarray_to_dataset( - xr.DataArray(x_t.cpu(), coords=coords_t), 6 - ) - - inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( - data, - target_lead_times=target_lead_times, - **dataclasses.asdict(self.ckpt.task_config), - ) + data, target_lead_times = self.from_dataarray_to_dataset( + xr.DataArray(x.cpu(), coords=coords), 6 + ) - predictions = rollout.chunked_prediction( - self.run_forward, - rng=self.prng_key, - inputs=inputs, - targets_template=targets * np.nan, - forcings=forcings, - ) - results.append(self.iterator_result_to_tensor(predictions)) + inputs, targets, forcings = data_utils.extract_inputs_targets_forcings( + data, + target_lead_times=target_lead_times, + **dataclasses.asdict(self.ckpt.task_config), + ) - out = torch.cat(results, dim=1) if n_times > 1 else results[0] + predictions = rollout.chunked_prediction( + self.run_forward, + rng=self.prng_key, + inputs=inputs, + targets_template=targets * np.nan, + forcings=forcings, + ) + out = self.iterator_result_to_tensor(predictions) output_coords = self.output_coords(coords) # Convert to device diff --git a/earth2studio/models/px/stormcast.py b/earth2studio/models/px/stormcast.py index 5a0d2aa73..dea2ec454 100644 --- a/earth2studio/models/px/stormcast.py +++ b/earth2studio/models/px/stormcast.py @@ -43,15 +43,11 @@ try: from omegaconf import OmegaConf - from physicsnemo.diffusion.preconditioners.legacy import EDMPrecond - from physicsnemo.diffusion.samplers.legacy_deterministic_sampler import ( - deterministic_sampler, - ) - from physicsnemo.models.diffusion_unets import StormCastUNet + from physicsnemo.models import Module as PhysicsNemoModule + from physicsnemo.utils.generative import deterministic_sampler except ImportError: OptionalDependencyFailure("stormcast") - StormCastUNet = None - EDMPrecond = None + PhysicsNemoModule = None OmegaConf = None deterministic_sampler = None @@ -291,14 +287,11 @@ def load_model( # load model registry: config = OmegaConf.load(package.resolve("model.yaml")) - # TODO: remove strict=False once checkpoints/imports updated to new diffusion API - regression = StormCastUNet.from_checkpoint( - package.resolve("StormCastUNet.0.0.mdlus"), - strict=False, + regression = PhysicsNemoModule.from_checkpoint( + package.resolve("StormCastUNet.0.0.mdlus") ) - diffusion = EDMPrecond.from_checkpoint( - package.resolve("EDMPrecond.0.0.mdlus"), - strict=False, + diffusion = PhysicsNemoModule.from_checkpoint( + package.resolve("EDMPrecond.0.0.mdlus") ) # Load metadata: means, stds, grid diff --git a/earth2studio/models/px/stormscope.py b/earth2studio/models/px/stormscope.py index 803f96e7c..9e97aed93 100644 --- a/earth2studio/models/px/stormscope.py +++ b/earth2studio/models/px/stormscope.py @@ -46,7 +46,7 @@ from earth2studio.utils.type import CoordSystem try: - from physicsnemo import Module + from physicsnemo.models import Module from physicsnemo.utils.zenith_angle import cos_zenith_angle except ImportError: OptionalDependencyFailure("stormscope") diff --git a/earth2studio/perturbation/gaussian.py b/earth2studio/perturbation/gaussian.py index 5809db6d9..4270169cd 100644 --- a/earth2studio/perturbation/gaussian.py +++ b/earth2studio/perturbation/gaussian.py @@ -232,18 +232,16 @@ def __init__( self.isht = InverseRealSHT( self.nlat, 2 * self.nlat, grid=grid, norm="backward" ).to(dtype=dtype) - self.lmax = self.isht.lmax - self.mmax = self.isht.mmax r_earth = 6.371e6 # kT is defined on slide 7 self.kT = (length_scale / r_earth) ** 2 / 2 - F0 = self.calculateF0(self.sigma, self.phi, self.lmax, self.kT) + F0 = self.calculateF0(self.sigma, self.phi, self.nlat, self.kT) prods = ( - torch.tensor([j * (j + 1) for j in range(0, self.lmax)]) - .view(self.lmax, 1) - .repeat(1, self.mmax) + torch.tensor([j * (j + 1) for j in range(0, self.nlat)]) + .view(self.nlat, 1) + .repeat(1, self.nlat + 1) ) sigma_n = torch.tril(torch.exp(-self.kT * prods / 2) * F0) @@ -262,7 +260,7 @@ def __init__( # in the call function self.gaussian_noise = torch.distributions.normal.Normal(self.mean, self.var) xi = self.gaussian_noise.sample( - torch.Size((self.N, self.lmax, self.mmax, 2)) + torch.Size((self.N, self.nlat, self.nlat + 1, 2)) ).squeeze() xi = torch.view_as_complex(xi) @@ -273,13 +271,13 @@ def __init__( self.register_buffer("coeff", coeff) def calculateF0( - self, sigma: float, phi: float, lmax: int, kT: float + self, sigma: float, phi: float, nlat: int, kT: float ) -> torch.Tensor: """This function scales the coefficients such that their grid-point standarddeviation is sigma. sigma is the desired variance phi is a np.exp(-dt/time_scale) """ numerator = sigma**2 * (1 - (phi**2)) - wavenumbers = torch.arange(1, lmax) + wavenumbers = torch.arange(1, nlat) denominator = (2 * wavenumbers + 1) * torch.exp( -kT * wavenumbers * (wavenumbers + 1) ) @@ -300,7 +298,7 @@ def forward(self, x: torch.Tensor, time: np.datetime64 = None) -> torch.Tensor: # Sample Gaussian noise. # TODO why??? for next step maybe? xi = self.gaussian_noise.sample( - torch.Size((self.N, self.lmax, self.mmax, 2)) + torch.Size((self.N, self.nlat, self.nlat + 1, 2)) ).squeeze() xi = torch.view_as_complex(xi) diff --git a/earth2studio/perturbation/spherical.py b/earth2studio/perturbation/spherical.py index 29ce383ea..995d53f81 100644 --- a/earth2studio/perturbation/spherical.py +++ b/earth2studio/perturbation/spherical.py @@ -203,14 +203,12 @@ def __init__( .to(dtype=dtype) .to(device=device) ) - self.lmax = self.isht.lmax - self.mmax = self.isht.mmax # Square root of the eigenvalues of C. sqrt_eig = ( - torch.tensor([j * (j + 1) for j in range(self.lmax)], device=device) - .view(self.lmax, 1) - .repeat(1, self.mmax) + torch.tensor([j * (j + 1) for j in range(self.nlat)], device=device) + .view(self.nlat, 1) + .repeat(1, self.nlat + 1) ) sqrt_eig = torch.tril( sigma * (((sqrt_eig / radius**2) + tau**2) ** (-alpha / 2.0)) @@ -234,7 +232,7 @@ def forward(self, N: int, xi: torch.Tensor | None = None) -> torch.Tensor: N : int Number of functions to sample. xi : torch.Tensor, default is None - Noise is a complex tensor of size (N, lmax, mmax). + Noise is a complex tensor of size (N, nlat, nlat+1). If None, new Gaussian noise is sampled. If xi is provided, N is ignored. @@ -248,7 +246,7 @@ def forward(self, N: int, xi: torch.Tensor | None = None) -> torch.Tensor: if xi is None: gaussian_noise = torch.distributions.normal.Normal(self.mean, self.var) xi = gaussian_noise.sample( - torch.Size((N, self.lmax, self.mmax, 2)) + torch.Size((N, self.nlat, self.nlat + 1, 2)) ).squeeze() xi = torch.view_as_complex(xi) diff --git a/earth2studio/run.py b/earth2studio/run.py index 706acaa93..562a5d082 100644 --- a/earth2studio/run.py +++ b/earth2studio/run.py @@ -23,7 +23,7 @@ from loguru import logger from tqdm import tqdm -from earth2studio.data import DataSource, ForecastSource, fetch_data +from earth2studio.data import DataSource, fetch_data from earth2studio.io import IOBackend from earth2studio.models.dx import DiagnosticModel from earth2studio.models.px import PrognosticModel @@ -158,7 +158,7 @@ def diagnostic( nsteps: int, prognostic: PrognosticModel, diagnostic: DiagnosticModel, - data: DataSource | ForecastSource, + data: DataSource, io: IOBackend, output_coords: CoordSystem = OrderedDict({}), device: torch.device | None = None, @@ -178,7 +178,7 @@ def diagnostic( Prognostic model diagnostic: DiagnosticModel Diagnostic model, must be on same coordinate axis as prognostic - data : DataSource | ForecastSource + data : DataSource Data source io : IOBackend IO object @@ -401,10 +401,9 @@ def ensemble( # Expand x, coords for ensemble mini_batch_size = min(batch_size, nensemble - batch_id) - coords = ( - OrderedDict({"ensemble": np.arange(batch_id, batch_id + mini_batch_size)}) - | coords0.copy() - ) + coords = { + "ensemble": np.arange(batch_id, batch_id + mini_batch_size) + } | coords0.copy() # Unsqueeze x for batching ensemble x = x.unsqueeze(0).repeat(mini_batch_size, *([1] * x.ndim)) diff --git a/earth2studio/serve/client/__init__.py b/earth2studio/serve/client/__init__.py deleted file mode 100644 index 0df5e8698..000000000 --- a/earth2studio/serve/client/__init__.py +++ /dev/null @@ -1,15 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. diff --git a/earth2studio/serve/client/client.py b/earth2studio/serve/client/client.py deleted file mode 100644 index ecbaa6eec..000000000 --- a/earth2studio/serve/client/client.py +++ /dev/null @@ -1,550 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - - -import io -import json -import time -from typing import Any, cast -from urllib.parse import urljoin - -import requests # type: ignore[import-untyped] -from requests.adapters import HTTPAdapter # type: ignore[import-untyped] -from requests.packages.urllib3.util.retry import Retry # type: ignore[import-untyped] - -from earth2studio.serve.client.exceptions import ( - APIConnectionError as ClientConnectionError, -) -from earth2studio.serve.client.exceptions import ( - BadRequestError, - Earth2StudioAPIError, - InferenceRequestNotFoundError, - InternalServerError, - RequestTimeoutError, -) -from earth2studio.serve.client.models import ( - HealthStatus, - InferenceRequest, - InferenceRequestResponse, - InferenceRequestResults, - InferenceRequestStatus, - RequestStatus, - StorageType, -) - - -class Earth2StudioClient: - """ - Python client for Earth2Studio REST API. - - Parameters - ---------- - base_url : str, optional - Base URL of the Earth2Studio API server. Default is "http://localhost:8000". - workflow_name : str, optional - Name of the workflow to use. Default is "deterministic_earth2_workflow". - timeout : float, optional - Request timeout in seconds. Default is 30.0. - max_retries : int, optional - Maximum number of retries for failed requests. Default is 3. - retry_backoff_factor : float, optional - Backoff factor for retries. Default is 0.3. - token : str, optional - Optional authentication token (sent as Bearer token in Authorization header). - - Examples - -------- - >>> client = Earth2StudioClient(base_url="http://localhost:8000") - >>> health = client.health_check() - >>> print(health.status) - healthy - - With authentication: - - >>> client = Earth2StudioClient(base_url="http://localhost:8000", token="your-token") - """ - - def __init__( - self, - base_url: str = "http://localhost:8000", - workflow_name: str = "deterministic_earth2_workflow", - timeout: float = 30.0, - max_retries: int = 3, - retry_backoff_factor: float = 0.3, - token: str | None = None, - ): - self.base_url = base_url.rstrip("/") - self.workflow_name = workflow_name - self.timeout = timeout - self.token = token - - # Create session with retry strategy - self.session = requests.Session() - retry_strategy = Retry( - total=max_retries, - backoff_factor=retry_backoff_factor, - status_forcelist=[429, 500, 502, 503, 504], - ) - adapter = HTTPAdapter(max_retries=retry_strategy) - self.session.mount("http://", adapter) - self.session.mount("https://", adapter) - - # Set default headers - headers = { - "Content-Type": "application/json", - "Accept": "application/json", - } - # Add authorization header if token is provided - if token: - headers["Authorization"] = f"Bearer {token}" - self.session.headers.update(headers) - - def _make_request( - self, - method: str, - endpoint: str, - json_data: dict | None = None, - params: dict | None = None, - return_response: bool = False, - stream: bool = False, - timeout: float | None = None, - ) -> dict | requests.Response: - """ - Make an HTTP request with error handling. - - Parameters - ---------- - method : str - HTTP method (GET, POST, etc.). - endpoint : str - API endpoint path. - json_data : dict, optional - JSON data for request body. - params : dict, optional - Query parameters. - return_response : bool, optional - If True, return raw Response object instead of parsed JSON. - stream : bool, optional - If True, enable streaming for large responses. - timeout : float, optional - Timeout in seconds. If None, uses client default. - - Returns - ------- - dict or requests.Response - Parsed JSON response (if return_response=False), or raw Response - object (if return_response=True). - - Raises - ------ - RequestTimeoutError - If the request times out. - APIConnectionError - If the connection fails. - Earth2StudioAPIError - For other request failures or non-2xx responses. - """ - url = urljoin(self.base_url + "/", endpoint.lstrip("/")) - timeout = self.timeout if timeout is None else timeout - try: - response = self.session.request( - method=method, - url=url, - json=json_data, - params=params, - timeout=timeout, - stream=stream, - ) - except requests.exceptions.Timeout: - raise RequestTimeoutError( - f"Request to {url} timed out after {timeout} seconds" - ) - except requests.exceptions.ConnectionError as e: - raise ClientConnectionError(f"Failed to connect to {url}: {str(e)}") - except requests.exceptions.RequestException as e: - raise Earth2StudioAPIError(f"Request failed: {str(e)}") - - # Handle HTTP error status codes - if response.status_code == 400: - error_data = self._parse_error_response(response) - raise BadRequestError( - error_data.get("error", "Bad request"), - details=error_data.get("details"), - ) - elif response.status_code == 404: - error_data = self._parse_error_response(response) - raise InferenceRequestNotFoundError( - error_data.get("error", "Not found"), details=error_data.get("details") - ) - elif response.status_code == 500: - error_data = self._parse_error_response(response) - raise InternalServerError( - error_data.get("error", "Internal server error"), - details=error_data.get("details"), - ) - elif not response.ok: - error_data = self._parse_error_response(response) - raise Earth2StudioAPIError( - error_data.get("error", f"HTTP {response.status_code} error"), - status_code=response.status_code, - details=error_data.get("details"), - ) - - # Return raw response if requested (for binary content like zip files) - if return_response: - return response - - # Otherwise parse as JSON (default behavior) - try: - return response.json() - except json.JSONDecodeError: - raise Earth2StudioAPIError("Invalid JSON response from server") - - def _parse_error_response(self, response: requests.Response) -> dict: - """ - Parse error response JSON, fallback to dict with error text. - - Parameters - ---------- - response : requests.Response - HTTP response from the API. - - Returns - ------- - dict - Parsed JSON body, or {"error": ...} if JSON decode fails. - """ - try: - return response.json() - except json.JSONDecodeError: - return {"error": response.text or f"HTTP {response.status_code} error"} - - def health_check(self) -> HealthStatus: - """ - Check if the API is running and healthy. - - Returns - ------- - HealthStatus - Object with status and timestamp. - - Raises - ------ - Earth2StudioAPIError - If the API is not accessible. - """ - response_data = self._make_request("GET", "/health") - return HealthStatus.from_dict(cast(dict[str, Any], response_data)) - - def submit_inference_request( - self, request: InferenceRequest - ) -> InferenceRequestResponse: - """ - Submit an inference request to be processed. - - Parameters - ---------- - request : InferenceRequest - InferenceRequest object with workflow configuration. - - Returns - ------- - InferenceRequestResponse - Response with execution ID and initial status. - - Raises - ------ - BadRequestError - If the request parameters are invalid. - Earth2StudioAPIError - For other API errors. - """ - response_data = self._make_request( - "POST", f"/v1/infer/{self.workflow_name}", json_data=request.to_dict() - ) - return InferenceRequestResponse.from_dict(cast(dict[str, Any], response_data)) - - def get_request_status(self, request_id: str) -> InferenceRequestStatus: - """ - Get the current status of an inference request. - - Parameters - ---------- - request_id : str - Unique identifier for the inference request. - - Returns - ------- - InferenceRequestStatus - Current progress and status. - - Raises - ------ - InferenceRequestNotFoundError - If the request ID is not found. - Earth2StudioAPIError - For other API errors. - """ - response_data = self._make_request( - "GET", f"/v1/infer/{self.workflow_name}/{request_id}/status" - ) - return InferenceRequestStatus.from_dict(cast(dict[str, Any], response_data)) - - def get_request_results( - self, - request_id: str, - timeout: float | None = None, - ) -> InferenceRequestResults: - """ - Get the results of a completed inference request by downloading the results. - - Parameters - ---------- - request_id : str - Unique identifier for the inference request. - timeout : float, optional - Timeout in seconds for the download request. If None, uses client default. - - Returns - ------- - InferenceRequestResults - Results with output file paths. Use result_paths() to get paths. - - Raises - ------ - InferenceRequestNotFoundError - If the request ID is not found. - Earth2StudioAPIError - For other API errors (including 202 if request is still processing). - - Notes - ----- - If the request is still processing, the API returns 202 and this method - raises Earth2StudioAPIError. Use get_request_status() to check completion first. - """ - # Use _make_request with return_response=True to get raw response for zip file - response = cast( - requests.Response, - self._make_request( - method="GET", - endpoint=f"/v1/infer/{self.workflow_name}/{request_id}/results", - return_response=True, - timeout=timeout, - ), - ) - - # Handle 202 status specially (request still processing) - if response.status_code == 202: - try: - error_data = response.json() - raise Earth2StudioAPIError( - error_data.get("message", "Request is still processing"), - status_code=202, - details=error_data.get("status"), - ) - except json.JSONDecodeError: - raise Earth2StudioAPIError( - "Request is still processing", status_code=202 - ) - - response_data = response.json() - return InferenceRequestResults.from_dict(response_data) - - def wait_for_completion( - self, - request_id: str, - poll_interval: float = 5.0, - timeout: float | None = None, - ) -> InferenceRequestResults: - """ - Wait for an inference request to complete and return results. - - Parameters - ---------- - request_id : str - Unique identifier for the inference request. - poll_interval : float, optional - How often to check status in seconds. Default is 5.0. - timeout : float, optional - Maximum time to wait in seconds. None for no timeout. - - Returns - ------- - InferenceRequestResults - Results when the request completes successfully. - - Raises - ------ - RequestTimeoutError - If timeout is reached. - Earth2StudioAPIError - If the request fails or other API errors occur. - """ - start_time = time.time() - - while True: - status = self.get_request_status(request_id) - - if status.status == RequestStatus.COMPLETED: - return self.get_request_results(request_id, timeout) - elif status.status == RequestStatus.FAILED: - raise Earth2StudioAPIError( - f"Inference request {request_id} failed: {status.error_message}" - ) - elif status.status == RequestStatus.CANCELLED: - raise Earth2StudioAPIError("Inference request was cancelled") - - # Check timeout (timeout=0.0 means fail immediately if not complete) - if timeout is not None and (time.time() - start_time) > timeout: - raise RequestTimeoutError( - f"Request {request_id} did not complete within {timeout} seconds" - ) - - time.sleep(poll_interval) - - def run_inference_sync( - self, - request: InferenceRequest, - poll_interval: float = 5.0, - timeout: float | None = None, - ) -> InferenceRequestResults: - """ - Submit an inference request and wait for it to complete. - - Convenience method that combines submit_inference_request() and - wait_for_completion(). - - Parameters - ---------- - request : InferenceRequest - InferenceRequest object with workflow configuration. - poll_interval : float, optional - How often to check status in seconds. Default is 5.0. - timeout : float, optional - Maximum time to wait in seconds. None for no timeout. - - Returns - ------- - InferenceRequestResults - Results when the request completes successfully. - """ - response = self.submit_inference_request(request) - return self.wait_for_completion(response.execution_id, poll_interval, timeout) - - def result_root_path(self, result: InferenceRequestResults) -> str: - """ - Get the root URL path for accessing result files. - - Parameters - ---------- - result : InferenceRequestResults - Result object returned by the request. - - Returns - ------- - str - Root path URL for result files (e.g. "/v1/infer/workflow_name/exec_123/results/"). - """ - return f"/v1/infer/{self.workflow_name}/{result.request_id}/results/" - - def download_result( - self, - result: InferenceRequestResults, - path: str, - timeout: float | None = None, - ) -> io.BytesIO: - """ - Download a result file from the server or S3. - - Parameters - ---------- - result : InferenceRequestResults - Result object containing request metadata. - path : str - Relative path to the result file (as returned in result_paths). - timeout : float, optional - Timeout in seconds for the download. If None, uses client default. - - Returns - ------- - io.BytesIO - In-memory buffer containing the downloaded file content. - - Raises - ------ - Earth2StudioAPIError - If the download fails or other API errors occur. - """ - if result.storage_type == StorageType.S3: - if not result.signed_url: - raise Earth2StudioAPIError("S3 storage type requires a signed URL") - - from earth2studio.serve.client.fsspec_utils import ( - create_cloudfront_mapper, - ) - - mapper = create_cloudfront_mapper(result.signed_url, zarr_path="") - # strip out the prefix execution_id from the path - parts = path.split("/") - if len(parts) < 2: - raise Earth2StudioAPIError( - f"Expected S3 result path to include an execution-id prefix, got: {path!r}" - ) - path = "/".join(parts[1:]) - content = mapper.fs.cat_file(path) - return io.BytesIO(content) - - # Default: download from server - response = cast( - requests.Response, - self._make_request( - method="GET", - endpoint=f"{self.result_root_path(result)}{path}", - return_response=True, - stream=True, - timeout=timeout, - ), - ) - # TODO: add support for downloading to tmp file to avoid OOM - return io.BytesIO(response.content) - - def close(self) -> None: - """ - Close the underlying HTTP session. - """ - self.session.close() # type: ignore[no-untyped-call] - - def __enter__(self) -> "Earth2StudioClient": - """ - Context manager entry. - - Returns - ------- - Earth2StudioClient - self. - """ - return self - - def __exit__( - self, - exc_type: type[BaseException] | None, - exc_val: BaseException | None, - exc_tb: object, - ) -> None: - """ - Context manager exit. Closes the HTTP session. - """ - self.close() diff --git a/earth2studio/serve/client/e2client.py b/earth2studio/serve/client/e2client.py deleted file mode 100644 index 59a17aebf..000000000 --- a/earth2studio/serve/client/e2client.py +++ /dev/null @@ -1,479 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - - -from collections import OrderedDict -from collections.abc import Iterator -from typing import Any, Literal -from urllib.parse import urljoin - -import numpy as np -import torch - -try: - import aiohttp -except ImportError: - aiohttp = None # type: ignore[assignment] -import xarray as xr - -from earth2studio.data import ( # type: ignore[import-untyped] - InferenceOutputSource, - fetch_data, -) -from earth2studio.models.auto import AutoModelMixin # type: ignore[import-untyped] -from earth2studio.models.px.utils import PrognosticMixin # type: ignore[import-untyped] -from earth2studio.serve.client import fsspec_utils -from earth2studio.serve.client.client import Earth2StudioClient -from earth2studio.serve.client.exceptions import Earth2StudioAPIError -from earth2studio.serve.client.models import ( - InferenceRequest, - InferenceRequestResults, - StorageType, -) -from earth2studio.utils.type import CoordSystem # type: ignore[import-untyped] - - -class RemoteEarth2Workflow: - """ - Remote inference workflow client for Earth2Studio API. - - Provides Earth2Studio-compatible interface for running inference on a remote - Earth2Studio API server. Supports both direct calls and iterator-based access. - - Parameters - ---------- - base_url : str - URL of the Earth2Studio API server. - workflow_name : str - Name of the workflow to execute on the server. - device : str or torch.device, optional - Device for tensor operations (e.g. "cuda", "cpu"). Default from CUDA availability. - xr_args : dict, optional - Additional arguments passed to xarray.open_dataset / xarray.open_zarr. - **client_kwargs : Any - Additional arguments passed to Earth2StudioClient (e.g. token for authentication). - """ - - def __init__( - self, - base_url: str, - workflow_name: str, - device: str | torch.device | None = None, - xr_args: dict[str, Any] | None = None, - **client_kwargs: Any, - ) -> None: - self.base_url = base_url - self.client = Earth2StudioClient( - base_url=base_url, workflow_name=workflow_name, **client_kwargs - ) - self.workflow_name = workflow_name - if device is None: - device = "cuda" if torch.cuda.is_available() else "cpu" - self.device = device - self.xr_args = xr_args.copy() if xr_args else {} - - def __call__(self, **kwargs: Any) -> "RemoteEarth2WorkflowResult": - """ - Execute inference request and return result object for accessing outputs. - - Parameters - ---------- - **kwargs : Any - Workflow parameters for the inference request. - - Returns - ------- - RemoteEarth2WorkflowResult - Result object for accessing inference outputs. - """ - request = InferenceRequest(parameters=kwargs.copy()) - response = self.client.submit_inference_request(request) - return RemoteEarth2WorkflowResult(self, response.execution_id) - - def to(self, device: torch.device | str) -> "RemoteEarth2Workflow": - """ - Move workflow to specified device. - - Parameters - ---------- - device : torch.device or str - Target device ("cuda", "cpu", or torch.device). - - Returns - ------- - RemoteEarth2Workflow - self for method chaining. - """ - self.device = device - return self - - -class RemoteEarth2WorkflowResult: - """ - Result object for a remote inference request. - - Provides methods to access inference results as datasets, data sources, or iterators. - The result is fetched lazily; methods wait for completion if needed. - - Parameters - ---------- - workflow : RemoteEarth2Workflow - Parent RemoteEarth2Workflow instance. - execution_id : str - Unique identifier for the inference execution. - """ - - def __init__(self, workflow: RemoteEarth2Workflow, execution_id: str) -> None: - """ - Store the parent workflow and execution id; result is fetched lazily. - - Parameters - ---------- - workflow : RemoteEarth2Workflow - Parent workflow instance. - execution_id : str - Unique identifier for the inference execution. - """ - self.workflow = workflow - self.execution_id = execution_id - self._result: InferenceRequestResults | None = None - - def _get_result(self) -> InferenceRequestResults: - """ - Return cached result or wait for completion and cache it. - - Returns - ------- - InferenceRequestResults - Cached or newly fetched inference results. - """ - if self._result is None: - self._result = self.workflow.client.wait_for_completion(self.execution_id) - return self._result - - def as_dataset(self) -> xr.Dataset: - """ - Wait for inference to complete and return output dataset. - - Returns - ------- - xr.Dataset - Xarray Dataset containing the inference result data. - - Raises - ------ - Earth2StudioAPIError - If the request did not return any outputs. - ValueError - If the result file format is not .zarr or .nc. - """ - request_result = self._get_result() - result_paths = request_result.result_paths() - if not result_paths: - raise Earth2StudioAPIError("The request did not return any outputs.") - result_path = result_paths[0] - - if result_path.endswith(".zarr"): - if request_result.storage_type == StorageType.S3: - # Extract zarr path without execution_id prefix (first path component) - zarr_path = "/".join(result_path.split("/")[1:]) - mapper = fsspec_utils.get_mapper(request_result, zarr_path) - ds = xr.open_zarr(mapper, consolidated=True, **self.workflow.xr_args) - elif request_result.storage_type == StorageType.SERVER: - result_url = urljoin( - self.workflow.base_url + "/", - ( - self.workflow.client.result_root_path(request_result) - + result_path - ).lstrip("/"), - ) - # Pass auth token and longer timeout for HTTP requests to zarr store - xr_kwargs = dict(self.workflow.xr_args) - storage_options = dict(xr_kwargs.pop("storage_options", {})) - if self.workflow.client.token: - headers = dict(storage_options.get("headers", {})) - headers["Authorization"] = f"Bearer {self.workflow.client.token}" - storage_options["headers"] = headers - # Use at least 300s timeout for zarr reads (fsspec/aiohttp) - zarr_timeout = max(300.0, self.workflow.client.timeout) - client_kwargs = dict(storage_options.get("client_kwargs", {})) - if aiohttp is not None and "timeout" not in client_kwargs: - client_kwargs["timeout"] = aiohttp.ClientTimeout(total=zarr_timeout) - storage_options["client_kwargs"] = client_kwargs - ds = xr.open_zarr( - result_url, - consolidated=True, - storage_options=storage_options or None, - **xr_kwargs, - ) - else: - raise ValueError( - f"Unsupported storage type: {request_result.storage_type}" - ) - elif result_path.endswith(".nc"): - # TODO: support OpenDAP in the future for remote NetCDF4 access? - result_data = self.workflow.client.download_result( - request_result, result_path - ) - ds = xr.open_dataset(result_data, engine="netcdf4", **self.workflow.xr_args) - else: - raise ValueError( - f"Unsupported result file format: {result_path!r}. " - "Only .zarr and .nc are supported for as_dataset()." - ) - - return ds - - def as_data_source(self) -> InferenceOutputSource: - """ - Wait for inference to complete and return as DataSource. - - Returns - ------- - DataSource - Data source wrapper for the inference results. - """ - ds = self.as_dataset() - return InferenceOutputSource(ds) - - def as_model( - self, iter_coord: Literal["time", "lead_time"] = "lead_time" - ) -> "InferenceOutputModel": - """ - Create model wrapper over inference results for iteration by time step. - - Parameters - ---------- - iter_coord : {"time", "lead_time"}, optional - Coordinate to iterate over. Default is "lead_time". - - Returns - ------- - InferenceOutputModel - Model that yields (tensor, coordinate_system) per time step. - """ - data_source = self.as_data_source() - return InferenceOutputModel( - data_source=data_source, iter_coord=iter_coord, device=self.workflow.device - ) - - -def _convert_time_to_lead_time( - x: torch.Tensor, coords: CoordSystem, start_time: np.datetime64 -) -> tuple[torch.Tensor, CoordSystem]: - """ - Convert time coordinate to lead_time coordinate. - - Transforms absolute time coordinates to lead times relative to start_time, - adding a time dimension with the start time. - - Parameters - ---------- - x : torch.Tensor - Input tensor. - coords : CoordSystem - Coordinate system containing time coordinates. - start_time : np.datetime64 - Reference start time for lead time calculation. - - Returns - ------- - tuple[torch.Tensor, CoordSystem] - Transformed tensor and updated coordinate system. - """ - coords = coords.copy() - time = coords["time"] - dims = list(coords.keys()) - time_dim = dims.index("time") - if "lead_time" not in dims: - raise ValueError( - "Cannot convert to lead_time: 'lead_time' coordinate not found in " - f"fetch_data output. Available coords: {dims}" - ) - lead_time_dim = dims.index("lead_time") - lead_time = time - start_time - coords["time"] = np.array([start_time]) - coords["lead_time"] = lead_time - x = x.transpose(time_dim, lead_time_dim) - return (x, coords) - - -class InferenceOutputModel(AutoModelMixin, PrognosticMixin): - """ - Prognostic model wrapper for inference output data sources. - - Wraps an InferenceOutputSource to provide a prognostic model interface that - can be used in Earth2Studio workflows. Pre-computed inference results are - consumed as if generated by a live model. - - Parameters - ---------- - data_source : InferenceOutputSource - Pre-computed inference data source. - iter_coord : {"time", "lead_time"}, optional - Coordinate to iterate over. Default is "lead_time". - variables : list[str], optional - Variable names to include. If None, uses all from the data source. - device : torch.device or str, optional - Device for tensor operations (e.g. "cuda", "cpu"). Default is "cpu". - """ - - def __init__( - self, - data_source: InferenceOutputSource, - iter_coord: Literal["time", "lead_time"] = "lead_time", - variables: list[str] | None = None, - device: torch.device | str = "cpu", - ): - self.data_source = data_source - self.iter_coord = iter_coord - if variables is None: - variables = self.data_source.da.coords["variable"] - self.variables = np.array(variables) - self.device = device - - def input_coords(self) -> CoordSystem: - """ - Return empty input coordinate system. - - This model reads from a pre-computed data source and requires no input - coordinates. - - Returns - ------- - CoordSystem - Empty ordered dictionary of coordinates. - """ - return OrderedDict( - { - "batch": np.empty(0), - "time": np.empty(0), - "lead_time": np.array([np.timedelta64(0, "h")]), - "variable": np.array([]), - "lat": np.empty(0), - "lon": np.empty(0), - } - ) - - def output_coords(self, input_coords: CoordSystem) -> CoordSystem: - """ - Generate output coordinate system based on data source coordinates. - - Constructs the coordinate system for output tensors. Time step is inferred - from the first two time coordinates if available, otherwise defaults to 6 hours. - - Parameters - ---------- - input_coords : CoordSystem - Input coordinate system (unused; kept for interface compatibility). - - Returns - ------- - CoordSystem - Coordinate system with batch, time, lead_time, variable, lat, lon. - """ - time_coord = self.data_source.da.coords["time"][:2].values - if len(time_coord) >= 2: - time_step = time_coord[1] - time_coord[0] - else: - # use a placeholder if we only have one time step of data - time_step = np.timedelta64(6, "h") - output_coords = OrderedDict( - { - "batch": np.empty(0), - "time": np.empty(0), - "lead_time": np.array([time_step]), - "variable": self.variables, - "lat": self.data_source.da.coords["lat"].values, - "lon": self.data_source.da.coords["lon"].values, - } - ) - return output_coords - - def to(self, device: torch.device | str) -> "InferenceOutputModel": - """ - Move model to specified device. - - Parameters - ---------- - device : torch.device or str - Target device ("cuda", "cpu", or torch.device). - - Returns - ------- - InferenceOutputModel - self for method chaining. - """ - self.device = device - return self - - def __call__( - self, x: torch.Tensor | None = None, coords: CoordSystem | None = None - ) -> tuple[torch.Tensor, CoordSystem]: - """ - Execute single time-step from the data source. - - Returns the first available time step. Input parameters are ignored; - data is read from the pre-computed data source. - - Parameters - ---------- - x : torch.Tensor, optional - Input tensor (unused; kept for interface compatibility). - coords : CoordSystem, optional - Input coordinate system (unused; kept for interface compatibility). - - Returns - ------- - tuple[torch.Tensor, CoordSystem] - Output tensor and coordinate system for the first time step. - """ - return next(self.create_iterator(x, coords)) - - def create_iterator( - self, x: torch.Tensor | None = None, coords: CoordSystem | None = None - ) -> Iterator[tuple[torch.Tensor, CoordSystem]]: - """ - Create iterator over time steps from the data source. - - Iterates through all available time steps, optionally converting time - coordinates to lead_time relative to the first time step. - - Parameters - ---------- - x : torch.Tensor, optional - Input tensor (unused; kept for interface compatibility). - coords : CoordSystem, optional - Input coordinate system (unused; kept for interface compatibility). - - Yields - ------ - tuple[torch.Tensor, CoordSystem] - (tensor, coordinate_system) for each time step in the data source. - """ - times = self.data_source.da.coords["time"].values - start_time = times[0] - for time in times: - (x, coords) = fetch_data( - self.data_source, - time=np.array([time]), - variable=self.variables, - device=self.device, - ) - if self.iter_coord == "lead_time": - (x, coords) = _convert_time_to_lead_time(x, coords, start_time) - - yield (x, coords) diff --git a/earth2studio/serve/client/exceptions.py b/earth2studio/serve/client/exceptions.py deleted file mode 100644 index f3c2de5c4..000000000 --- a/earth2studio/serve/client/exceptions.py +++ /dev/null @@ -1,137 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - - -class Earth2StudioAPIError(Exception): - """Base exception for Earth2Studio API errors. - - Parameters - ---------- - message : str - Human-readable error message. - status_code : int, optional - HTTP status code if the error came from an API response. - details : str, optional - Additional error details. - """ - - def __init__( - self, - message: str, - status_code: int | None = None, - details: str | None = None, - ): - super().__init__(message) - self.message = message - self.status_code = status_code - self.details = details - - def __str__(self) -> str: - """ - Return a human-readable error string. - - Returns - ------- - str - Error string including message, status code (if set), and details (if set). - """ - error_msg = f"Earth2Studio API Error: {self.message}" - if self.status_code: - error_msg += f" (HTTP {self.status_code})" - if self.details: - error_msg += f" - {self.details}" - return error_msg - - -class BadRequestError(Earth2StudioAPIError): - """Exception raised for HTTP 400 Bad Request errors.""" - - def __init__(self, message: str, details: str | None = None): - """ - Initialize the exception. - - Parameters - ---------- - message : str - Human-readable error message. - details : str, optional - Additional error details. - """ - super().__init__(message, status_code=400, details=details) - - -class InferenceRequestNotFoundError(Earth2StudioAPIError): - """Exception raised for HTTP 404 Not Found errors when inference request is not found.""" - - def __init__(self, message: str, details: str | None = None): - """ - Initialize the exception. - - Parameters - ---------- - message : str - Human-readable error message. - details : str, optional - Additional error details. - """ - super().__init__(message, status_code=404, details=details) - - -class InternalServerError(Earth2StudioAPIError): - """Exception raised for HTTP 500 Internal Server errors.""" - - def __init__(self, message: str, details: str | None = None): - """ - Initialize the exception. - - Parameters - ---------- - message : str - Human-readable error message. - details : str, optional - Additional error details. - """ - super().__init__(message, status_code=500, details=details) - - -class RequestTimeoutError(Earth2StudioAPIError): - """Exception raised when a request times out.""" - - def __init__(self, message: str = "Request timed out"): - """ - Initialize the exception. - - Parameters - ---------- - message : str, optional - Human-readable error message. Default is "Request timed out". - """ - super().__init__(message) - - -class APIConnectionError(Earth2StudioAPIError): - """Exception raised when connection to the API fails.""" - - def __init__(self, message: str = "Failed to connect to Earth2Studio API"): - """ - Initialize the exception. - - Parameters - ---------- - message : str, optional - Human-readable error message. Default is "Failed to connect to Earth2Studio API". - """ - super().__init__(message) diff --git a/earth2studio/serve/client/fsspec_utils.py b/earth2studio/serve/client/fsspec_utils.py deleted file mode 100644 index c121e7108..000000000 --- a/earth2studio/serve/client/fsspec_utils.py +++ /dev/null @@ -1,302 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - - -from typing import Any, NoReturn -from urllib.parse import parse_qs, urlencode, urlparse - -import fsspec # type: ignore[import-untyped] - -from earth2studio.serve.client.models import InferenceRequestResults, StorageType - - -class SignedURLFileSystem(fsspec.AbstractFileSystem): - """ - FSSpec filesystem that appends signed params to requests. - - Wraps a base HTTP filesystem and URL; converts 403 responses to - FileNotFoundError for compatibility with consumers like Zarr. - """ - - def __init__( - self, base_fs: Any, query_params: dict[str, str], base_url: str - ) -> None: - """ - Wrap a base filesystem and URL with query params for signed requests. - - Parameters - ---------- - base_fs : Any - Base fsspec filesystem (e.g. HTTP). - query_params : dict[str, str] - Query parameters to append (e.g. Policy, Signature, Key-Pair-Id). - base_url : str - Base URL for the store. - """ - super().__init__() - self._fs = base_fs - self._query_params = query_params - self._base_url = base_url - self._query_string = urlencode(query_params, safe="~") - - def _make_signed_path(self, path: str) -> str: - """ - Return the path with signed query parameters appended. - - Parameters - ---------- - path : str - Relative or absolute path/URL. - - Returns - ------- - str - Full URL with signed query string. - """ - if path.startswith("http"): - full_url = path - else: - clean_path = path.lstrip("/") - full_url = ( - f"{self._base_url}/{clean_path}" if clean_path else self._base_url - ) - separator = "&" if "?" in full_url else "?" - return f"{full_url}{separator}{self._query_string}" - - def _handle_403(self, e: BaseException, path: str) -> "NoReturn": - """ - Convert 403 errors to FileNotFoundError; re-raise others. - - Parameters - ---------- - e : BaseException - Caught exception. - path : str - Path that was accessed (for error message). - """ - error_str = str(e).lower() - if "403" in str(e) or "forbidden" in error_str: - raise FileNotFoundError(f"File not found: {path}") from None - raise e - - def _open(self, path: str, mode: str = "rb", **kwargs: Any) -> Any: - """ - Open a path with signed URL; 403 is converted to FileNotFoundError. - - Parameters - ---------- - path : str - Path or URL to open. - mode : str, optional - Open mode (e.g. "rb"). Default is "rb". - **kwargs : Any - Passed to the underlying filesystem. - - Returns - ------- - Any - File-like object from the base filesystem. - - Raises - ------ - FileNotFoundError - If the server returns 403 (forbidden). - """ - try: - return self._fs._open(self._make_signed_path(path), mode=mode, **kwargs) - except Exception as e: - self._handle_403(e, path) - - def cat_file( - self, path: str, start: int | None = None, end: int | None = None, **kwargs: Any - ) -> Any: - """ - Read file contents with signed URL; 403 is converted to FileNotFoundError. - - Parameters - ---------- - path : str - Path or URL to read. - start : int, optional - Start byte offset. - end : int, optional - End byte offset. - **kwargs : Any - Passed to the underlying filesystem. - - Returns - ------- - Any - File contents (typically bytes). - - Raises - ------ - FileNotFoundError - If the server returns 403. - """ - try: - return self._fs.cat_file( - self._make_signed_path(path), start=start, end=end, **kwargs - ) - except Exception as e: - self._handle_403(e, path) - - def _cat_file( - self, path: str, start: int | None = None, end: int | None = None, **kwargs: Any - ) -> Any: - """ - Async cat_file used by Zarr; delegates to cat_file. - - Parameters - ---------- - path : str - Path or URL to read. - start : int, optional - Start byte offset. - end : int, optional - End byte offset. - **kwargs : Any - Passed to cat_file. - - Returns - ------- - Any - File contents. - """ - return self.cat_file(path, start=start, end=end, **kwargs) - - def info(self, path: str, **kwargs: Any) -> Any: - """ - Return metadata for path with signed URL; 403 becomes FileNotFoundError. - - Parameters - ---------- - path : str - Path or URL. - **kwargs : Any - Passed to the underlying filesystem. - - Returns - ------- - Any - Metadata dict for the path. - - Raises - ------ - FileNotFoundError - If the server returns 403. - """ - try: - return self._fs.info(self._make_signed_path(path), **kwargs) - except Exception as e: - self._handle_403(e, path) - - def exists(self, path: str, **kwargs: Any) -> bool: - """ - Return True if path exists; 403 is treated as not found. - - Parameters - ---------- - path : str - Path or URL to check. - **kwargs : Any - Passed to the underlying filesystem. - - Returns - ------- - bool - True if path exists, False if not found or 403. - """ - try: - return self._fs.exists(self._make_signed_path(path), **kwargs) - except Exception as e: - try: - self._handle_403(e, path) - except FileNotFoundError: - return False - - -def create_cloudfront_mapper(signed_url: str, zarr_path: str = "") -> Any: - """ - Create an fsspec mapper for a CloudFront signed Zarr URL. - - Parameters - ---------- - signed_url : str - CloudFront signed URL with Policy, Signature, and Key-Pair-Id query params. - zarr_path : str, optional - Subpath within the signed URL to the Zarr store. Default is "". - - Returns - ------- - fsspec.mapping.FSMap - Mapper suitable for use with xarray.open_zarr(). - """ - # Parse the URL - parsed = urlparse(signed_url) - - # Extract query parameters - query_params = {k: v[0] for k, v in parse_qs(parsed.query).items()} - - # Get base path (remove trailing /* if present) - base_path = parsed.path.rstrip("/*").rstrip("*") - - # Reconstruct base URL - if zarr_path != "": - base_url = f"{parsed.scheme}://{parsed.netloc}{base_path}/{zarr_path}" - else: - base_url = f"{parsed.scheme}://{parsed.netloc}{base_path}" - - # Create HTTP filesystem - fs = fsspec.filesystem("https") - - signed_fs = SignedURLFileSystem(fs, query_params, base_url) - mapper = fsspec.mapping.FSMap(root="", fs=signed_fs, check=False, create=False) - - return mapper - - -def get_mapper( - request_result: InferenceRequestResults, zarr_path: str = "" -) -> Any | None: - """ - Return an fsspec mapper for the result, or None for SERVER storage. - - Parameters - ---------- - request_result : InferenceRequestResults - Inference result containing storage type and optional signed_url. - zarr_path : str, optional - Subpath to the Zarr store within the result. Default is "". - - Returns - ------- - fsspec.mapping.FSMap or None - Mapper for S3/signed URL storage, or None for SERVER storage. - - Raises - ------ - ValueError - If storage type is S3 but signed_url is missing, or storage type is unsupported. - """ - if request_result.storage_type == StorageType.S3: - if request_result.signed_url is None: - raise ValueError("S3 storage type requires a signed URL") - return create_cloudfront_mapper(request_result.signed_url, zarr_path) - elif request_result.storage_type == StorageType.SERVER: - return None - else: - raise ValueError(f"Unsupported storage type: {request_result.storage_type}") diff --git a/earth2studio/serve/client/models.py b/earth2studio/serve/client/models.py deleted file mode 100644 index 60e3f9234..000000000 --- a/earth2studio/serve/client/models.py +++ /dev/null @@ -1,314 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - - -import json -from dataclasses import dataclass -from datetime import date, datetime, timedelta -from enum import Enum -from typing import Any - -import numpy as np - - -class StorageType(str, Enum): - """Storage type for inference results.""" - - SERVER = "server" - S3 = "s3" - - -class RequestStatus(Enum): - """Status values for inference requests.""" - - # Initial statuses - ACCEPTED = "accepted" - QUEUED = "queued" - - # Processing statuses - RUNNING = "running" - - # Final statuses - COMPLETED = "completed" - FAILED = "failed" - CANCELLED = "cancelled" - PENDING_RESULTS = "pending_results" - - -@dataclass -class InferenceRequest: - """Main inference request payload.""" - - parameters: dict[str, Any] | None = None - - def to_dict(self) -> dict[str, Any]: - """ - Convert to dictionary for JSON serialization. - - Returns - ------- - dict[str, Any] - Dictionary suitable for JSON request body (e.g. {"parameters": ...}). - """ - # use custom JSON encoder first to convert objects that are normally not serializable - parameters = json.loads( - json.dumps(self.parameters, default=InferenceRequest.json_serial) - ) - return {"parameters": parameters} - - @staticmethod - def json_serial(obj: Any) -> Any: - """ - JSON serializer for objects not serializable by default json code. - - Parameters - ---------- - obj : Any - Object to serialize (numpy array, datetime, timedelta, etc.). - - Returns - ------- - Any - JSON-serializable representation of the object. - """ - if isinstance(obj, np.ndarray): - return list(obj) - elif isinstance(obj, (datetime, date)): - return obj.isoformat() - elif isinstance(obj, timedelta): - return obj.total_seconds() - elif isinstance(obj, np.integer): - return int(obj) - elif isinstance(obj, np.floating): - return float(obj) - elif isinstance(obj, np.datetime64): - return str(obj) - elif isinstance(obj, np.timedelta64): - return obj / np.timedelta64(1, "s") # seconds as float - else: - raise TypeError( - f"Object of type {type(obj).__name__} is not JSON serializable" - ) - - -@dataclass -class InferenceRequestResponse: - """Response when submitting an inference request.""" - - execution_id: str - status: RequestStatus - message: str - timestamp: datetime - - @classmethod - def from_dict(cls, data: dict[str, Any]) -> "InferenceRequestResponse": - """ - Build an InferenceRequestResponse from an API response dict. - - Parameters - ---------- - data : dict[str, Any] - API response dictionary containing execution_id, status, message, timestamp. - - Returns - ------- - InferenceRequestResponse - Constructed response instance. - """ - return cls( - execution_id=data["execution_id"], - status=RequestStatus(data["status"]), - message=data["message"], - timestamp=datetime.fromisoformat(data["timestamp"].replace("Z", "+00:00")), - ) - - -@dataclass -class ProgressInfo: - """Progress information for inference requests.""" - - progress: str - current_step: int - total_steps: int - - -@dataclass -class InferenceRequestStatus: - """Status information for an inference request.""" - - execution_id: str - status: RequestStatus - progress: ProgressInfo | None - error_message: str | None - - @classmethod - def from_dict(cls, data: dict[str, Any]) -> "InferenceRequestStatus": - """ - Build an InferenceRequestStatus from an API response dict. - - Parameters - ---------- - data : dict[str, Any] - API response dictionary containing execution_id, status, progress, error_message. - - Returns - ------- - InferenceRequestStatus - Constructed status instance. - """ - progress_data = data.get("progress") - progress = ( - ProgressInfo( - progress=progress_data["progress"], - current_step=progress_data["current_step"], - total_steps=progress_data["total_steps"], - ) - if progress_data is not None - else None - ) - - return cls( - execution_id=data["execution_id"], - status=RequestStatus(data["status"]), - progress=progress, - error_message=data.get("error_message"), - ) - - -@dataclass -class OutputFile: - """Information about an output file.""" - - path: str - size: int - - @classmethod - def from_dict(cls, data: dict[str, Any]) -> "OutputFile": - """ - Build an OutputFile from an API response dict. - - Parameters - ---------- - data : dict[str, Any] - API response dictionary containing path and size. - - Returns - ------- - OutputFile - Constructed output file instance. - """ - return cls(path=data["path"], size=data["size"]) - - -@dataclass -class InferenceRequestResults: - """Results of a completed inference request.""" - - request_id: str - status: RequestStatus - output_files: list[OutputFile] - completion_time: datetime | None - execution_time_seconds: float | None = None - storage_type: StorageType = StorageType.SERVER - signed_url: str | None = None - - @classmethod - def from_dict(cls, data: dict[str, Any]) -> "InferenceRequestResults": - """ - Build InferenceRequestResults from an API response dict. - - Parameters - ---------- - data : dict[str, Any] - API response dictionary containing request_id, status, output_files, - completion_time, and optional execution_time_seconds, storage_type, signed_url. - - Returns - ------- - InferenceRequestResults - Constructed results instance. - """ - output_files = [ - OutputFile.from_dict(file_data) for file_data in data["output_files"] - ] - completion_timestamp = data.get("completion_time") - completion_time = ( - datetime.fromisoformat(completion_timestamp.replace("Z", "+00:00")) - if completion_timestamp is not None - else None - ) - - return cls( - request_id=data["request_id"], - status=RequestStatus(data["status"]), - output_files=output_files, - completion_time=completion_time, - execution_time_seconds=data.get("execution_time_seconds"), - storage_type=StorageType( - data.get("storage_type", StorageType.SERVER.value) - ), - signed_url=data.get("signed_url"), - ) - - def result_paths(self) -> list[str]: - """ - Get paths to result data files found in the request response. - - Returns - ------- - list[str] - List of result paths (e.g. zarr roots or .nc files). Append to the - server results URL to download or open. - """ - # locate the root of zarr store - zarr_paths = { - f.path - for f in self.output_files - if (".zarr/" in f.path) or f.path.endswith(".zarr") - } - zarr_paths_sorted = sorted( - {path[: path.find(".zarr") + len(".zarr")] for path in zarr_paths} - ) - netcdf_paths = [f.path for f in self.output_files if f.path.endswith(".nc")] - return zarr_paths_sorted + netcdf_paths - - -@dataclass -class HealthStatus: - """Health status response.""" - - status: str - timestamp: datetime - - @classmethod - def from_dict(cls, data: dict[str, Any]) -> "HealthStatus": - """ - Build a HealthStatus from an API response dict. - - Parameters - ---------- - data : dict[str, Any] - API response dictionary containing status and timestamp. - - Returns - ------- - HealthStatus - Constructed health status instance. - """ - return cls( - status=data["status"], - timestamp=datetime.fromisoformat(data["timestamp"].replace("Z", "+00:00")), - ) diff --git a/earth2studio/utils/coords.py b/earth2studio/utils/coords.py index c8259f6c2..62f1d85ae 100644 --- a/earth2studio/utils/coords.py +++ b/earth2studio/utils/coords.py @@ -14,22 +14,14 @@ # See the License for the specific language governing permissions and # limitations under the License. -import warnings from collections import OrderedDict -from copy import deepcopy from typing import Literal import numpy as np import torch -import xarray as xr from earth2studio.utils.type import CoordSystem -try: - import cupy as cp -except ImportError: - cp = None - def handshake_dim( input_coords: CoordSystem, @@ -83,7 +75,7 @@ def handshake_dim( def handshake_coords( input_coords: CoordSystem, target_coords: CoordSystem, - required_dim: str | list[str], + required_dim: str, ) -> None: """Simple check to see if the required dimensions have the same coordinate system @@ -93,8 +85,8 @@ def handshake_coords( Input coordinate system to validate target_coords : CoordSystem Target coordinate system - required_dim : str | list[str] - Required dimension(s) (name of coordinate) + required_dim : str + Required dimension (name of coordinate) Raises ------ KeyError @@ -102,31 +94,27 @@ def handshake_coords( ValueError If coordinates of required dimensions don't match """ - if isinstance(required_dim, str): - required_dim = [required_dim] - - for _required_dim in required_dim: - if _required_dim not in input_coords: - raise KeyError( - f"Required dimension {_required_dim} not found in input coordinates" - ) + if required_dim not in input_coords: + raise KeyError( + f"Required dimension {required_dim} not found in input coordinates" + ) - if _required_dim not in target_coords: - raise KeyError( - f"Required dimension {_required_dim} not found in target coordinates" - ) + if required_dim not in target_coords: + raise KeyError( + f"Required dimension {required_dim} not found in target coordinates" + ) - if input_coords[_required_dim].shape != target_coords[_required_dim].shape: - raise ValueError( - f"Coordinate systems for required dim {_required_dim} are not the same" - ) + if input_coords[required_dim].shape != target_coords[required_dim].shape: + raise ValueError( + f"Coordinate systems for required dim {required_dim} are not the same" + ) - if not np.all( - (input_coords[_required_dim] == target_coords[_required_dim]).flatten() - ): - raise ValueError( - f"Coordinate systems for required dim {_required_dim} are not the same" - ) + if not np.all( + (input_coords[required_dim] == target_coords[required_dim]).flatten() + ): + raise ValueError( + f"Coordinate systems for required dim {required_dim} are not the same" + ) def handshake_size( @@ -318,198 +306,6 @@ def map_coords( return x, mapped_coords -def map_coords_xr( - x: xr.DataArray, - output_coords: CoordSystem, - method: Literal["nearest"] = "nearest", -) -> xr.DataArray: - """Map xarray DataArray to target coordinate system using selection or interpolation. - - Maps an input DataArray to match the coordinates specified in output_coords by - selecting or interpolating along dimensions. Supports both numpy and cupy-backed - DataArrays. Empty coordinate arrays are ignored, and warnings are issued for - missing coordinate keys. - - Parameters - ---------- - x : xr.DataArray - Input DataArray to map. May be backed by numpy or cupy arrays. - output_coords : CoordSystem - Target coordinate system containing a subset of coordinates present in x. - Dimensions not in output_coords are preserved from the input. - method : Literal["nearest"], optional - Interpolation method for numeric coordinates, by default "nearest" - - Returns - ------- - xr.DataArray - Mapped DataArray with coordinates matching output_coords where specified. - Preserves all dimensions and coordinates not specified in output_coords. - - Raises - ------ - KeyError - If output coordinate dimension is not found in input DataArray - ValueError - If non-numeric coordinate values are not present in input coordinates - If interpolation method is not supported - """ - result = x.copy() - - # Build selection/interpolation dictionary - sel_dict = {} - interp_dict = {} - - for key, value in output_coords.items(): - # Ignore batch dimension - if key == "batch": - continue - - # Skip empty arrays (free coordinate system) - if len(value) == 0: - continue - - # Check if dimension exists in input - if key not in result.dims and key not in result.coords: - warnings.warn( - f"Coordinate key '{key}' not found in input DataArray. " - f"Available dims: {list(result.dims)}, " - f"Available coords: {list(result.coords.keys())}" - ) - continue - - # Get coordinate values from input DataArray - if key in result.coords: - coord_values = result.coords[key] - elif key in result.dims: - coord_values = result[key] - else: - continue # Should not happen due to check above - - coord_array = ( - coord_values.values if hasattr(coord_values, "values") else coord_values - ) - - # Check if coordinate types are compatible - # Check for datetime/timedelta first (these are not numeric for comparison purposes) - is_datetime = np.issubdtype(value.dtype, np.datetime64) or np.issubdtype( - coord_array.dtype, np.datetime64 - ) - is_timedelta = np.issubdtype(value.dtype, np.timedelta64) or np.issubdtype( - coord_array.dtype, np.timedelta64 - ) - # Only treat as numeric if both are numeric AND neither is datetime/timedelta - is_numeric = ( - not is_datetime - and not is_timedelta - and np.issubdtype(value.dtype, np.number) - and np.issubdtype(coord_array.dtype, np.number) - ) - - # Check if all output values are in input (exact match) - if is_numeric: - # Numeric coordinate: check if values match exactly - if len(value) == len(coord_array) and np.allclose( - value, coord_array, equal_nan=True - ): - continue # No change needed, exact match - - # Check if all values are present in input (can use selection) - if np.all(np.isin(value, coord_array)): - sel_dict[key] = value - else: - # Need interpolation for values not in input - # xarray's interp uses coordinate names and handles dimension mapping - interp_dict[key] = xr.DataArray(value, dims=[key]) - elif is_datetime or is_timedelta: - # Datetime/timedelta coordinate: use direct equality comparison - if len(value) == len(coord_array) and np.array_equal(value, coord_array): - continue # No change needed, exact match - - # Check if all values are present in input (can use selection) - if np.all(np.isin(value, coord_array)): - sel_dict[key] = value - else: - # Need interpolation for datetime/timedelta values not in input - # xarray's interp uses coordinate names and handles dimension mapping - interp_dict[key] = xr.DataArray(value, dims=[key]) - else: - # Non-numeric coordinate: must use selection, all values must be present - if not np.all(np.isin(value, coord_array)): - raise ValueError( - f"For non-numeric coordinate '{key}', all values of output coords " - f"must be in the input coordinates. Some elements of {value} are " - f"not in {coord_array}." - ) - sel_dict[key] = value - - # Apply selection first (exact matches) - if sel_dict: - result = result.sel(sel_dict) - - # Apply nearest-neighbor interpolation per dimension using torch - if interp_dict: - if method != "nearest": - raise ValueError(f"Interpolation method '{method}' not supported") - - data = result.data - is_cupy = cp is not None and isinstance(data, cp.ndarray) - dims = list(result.dims) - new_coords = dict(result.coords) - - for key, target_da in interp_dict.items(): - dim_idx = dims.index(key) - src_raw = np.asarray(result.coords[key].values) - tgt_raw = np.asarray(target_da.values) - - sort_order = np.argsort(src_raw) - src_sorted = src_raw[sort_order] - idx_sorted = np.searchsorted(src_sorted, tgt_raw) - idx_sorted = np.clip(idx_sorted, 1, len(src_sorted) - 1) - left = np.abs(tgt_raw - src_sorted[idx_sorted - 1]) - right = np.abs(tgt_raw - src_sorted[idx_sorted]) - idx_sorted = np.where(left <= right, idx_sorted - 1, idx_sorted) - - # Map back to original unsorted indices - idx = sort_order[idx_sorted] - - # Index into the data array along this dimension - if is_cupy: - idx_arr = cp.asarray(idx) - data = cp.take(data, idx_arr, axis=dim_idx) - else: - data = np.take(data, idx, axis=dim_idx) - - # Update the interpolated dimension coordinate - new_coords[key] = (key, tgt_raw) - - # Re-index any non-dimension coordinates that depend on this dim - for cname, cval in list(new_coords.items()): - if cname == key: - continue - if isinstance(cval, xr.Variable): - c_dims = cval.dims - c_data = cval.values - elif isinstance(cval, xr.DataArray): - c_dims = cval.dims - c_data = cval.values - elif isinstance(cval, tuple) and len(cval) == 2: - c_dims, c_data = cval - if isinstance(c_dims, str): - c_dims = (c_dims,) - else: - continue - - if key in c_dims: - ax = list(c_dims).index(key) - c_data = np.take(np.asarray(c_data), idx, axis=ax) - new_coords[cname] = (c_dims, c_data) - - result = xr.DataArray(data=data, dims=dims, coords=new_coords) - - return result - - def split_coords( x: torch.Tensor, coords: CoordSystem, dim: str = "variable" ) -> tuple[list[torch.Tensor], CoordSystem, np.ndarray]: @@ -633,166 +429,3 @@ def convert_multidim_to_singledim( i += j + 1 return CoordSystem(adjusted_coords), mapping - - -def tile_coords( - x: torch.Tensor, coords: CoordSystem, target_coords: CoordSystem -) -> tuple[torch.Tensor, CoordSystem]: - """Tile tensor x to match dimensions in target_coords that don't exist in coords. - - This function tiles the input tensor to match leading dimensions from target_coords - that are not present in coords. Dimensions that exist in both coords and target_coords - are ignored in target_coords and use the values from coords instead. - - Parameters - ---------- - x : torch.Tensor - Source tensor to be tiled - coords : CoordSystem - Coordinate system for x tensor - target_coords : CoordSystem - Target coordinate system. Dimensions that exist in coords are ignored. - - Returns - ------- - tuple[torch.Tensor, CoordSystem] - Tuple containing the tiled tensor and updated coordinate system - - Examples - -------- - Tiling a tensor to match additional dimensions from target_coords - - >>> from earth2studio.utils.coords import tile_coords - >>> from collections import OrderedDict - >>> import torch - >>> import numpy as np - >>> - >>> x = torch.randn(3, 4) - >>> coords = OrderedDict({ - ... "variable": np.array(["a", "b", "c"]), - ... "time": np.array([0, 1, 2, 3]) - ... }) - >>> - >>> target_coords = OrderedDict({ - ... "batch": np.array([0, 1]), - ... "ensemble": np.array([0, 1, 2]), - ... "variable": np.array(["x", "y"]), # Ignored, uses coords value - ... "time": np.array([10, 20, 30, 40]) # Ignored, uses coords value - ... }) - >>> - >>> # Tile x to match batch and ensemble dimensions - >>> x_tiled, out_coords = tile_coords(x, coords, target_coords) - >>> x_tiled.shape - torch.Size([2, 3, 3, 4]) - >>> list(out_coords.keys()) - ['batch', 'ensemble', 'variable', 'time'] - """ - coords_keys = set(coords.keys()) - leading_dims = OrderedDict() - common_dims = [] - - for key, val in target_coords.items(): - if key not in coords_keys: - leading_dims[key] = val - else: - common_dims.append(key) - - # Validate that all common dims are at the end of target_coords - if common_dims: - target_keys = list(target_coords.keys()) - coords_keys_list = list(coords.keys()) - if target_keys[-len(common_dims) :] != coords_keys_list: - raise ValueError( - f"All common dimensions must appear at the end of target_coords. " - f"Common dimensions: {coords_keys_list}, " - f"target_coords trailing keys: {target_keys[-len(common_dims):]}, " - f"target_coords order: {target_keys}" - ) - - n_lead = len(leading_dims) - - out_coords = deepcopy(leading_dims) - for key, val in coords.items(): - out_coords[key] = val - - # add leading size-1 dims so tile has one rep per dimension, then tile to match target - reps = [len(dim) for dim in leading_dims.values()] + [1] * len(x.shape) - x_tiled = x.view(*([1] * n_lead), *x.shape).tile(reps) - - return x_tiled, out_coords - - -def cat_coords( - tensors: tuple[torch.Tensor, ...], - coords: tuple[CoordSystem, ...], - dim: str = "variable", -) -> tuple[torch.Tensor, CoordSystem]: - """ - concatenate data along coordinate dimension. - - Parameters - ---------- - tensors : tuple[torch.Tensor, ...] - Tuple of input tensors to concatenate - coords : tuple[CoordSystem, ...] - Tuple of OrderedDicts representing coordinate systems for each tensor - dim : str - name of dimension along which to concatenate - - Returns - ------- - tuple[torch.Tensor, CoordSystem] - Tuple containing output tensor and coordinate OrderedDict from - concatenated data. - - Raises - ------ - ValueError - If tensors and coords have different lengths - If input tensors have different dimension names - If non-concatenation dimensions don't match across inputs - KeyError - If concatenation dimension is not found in all coordinate systems - """ - if len(tensors) != len(coords): - raise ValueError( - f"tensors and coords must have the same length, got {len(tensors)} tensors and {len(coords)} coords" - ) - - if len(tensors) == 0: - raise ValueError("at least one tensor and coord must be provided") - - if len(tensors) == 1: - return tensors[0], deepcopy(coords[0]) - - # Use first coord as reference - ref_coord = coords[0] - - # make sure cat dim is present in all tensors - handshake_dim(ref_coord, dim) - - # make sure all tensors have the same dimension names - ref_keys = list(ref_coord.keys()) - for i, coord in enumerate(coords[1:], start=1): - handshake_dim(coord, dim) - if not list(coord.keys()) == ref_keys: - raise ValueError( - f"all input tensors must have the same dimension names. " - f"Tensor 0 has {ref_keys}, tensor {i} has {list(coord.keys())}" - ) - - # make sure all the other dimensions are of equal length - other_dims = list(ref_keys) - other_dims.remove(dim) - for i, coord in enumerate(coords[1:], start=1): - handshake_coords(ref_coord, coord, other_dims) - - # assemble output coords - coz = deepcopy(ref_coord) - coz[dim] = np.concatenate([coord[dim] for coord in coords]) - - # concatenate tensors - dim_index = list(coz).index(dim) - zz = torch.cat(tensors, dim=dim_index) - - return zz, coz diff --git a/earth2studio/utils/time.py b/earth2studio/utils/time.py index e58b70cc0..e2b823892 100644 --- a/earth2studio/utils/time.py +++ b/earth2studio/utils/time.py @@ -17,7 +17,7 @@ import numpy as np -from earth2studio.utils.type import LeadTimeArray, TimeArray, TimeTolerance +from earth2studio.utils.type import LeadTimeArray, TimeArray def timearray_to_datetime(time: TimeArray) -> list[datetime]: @@ -95,64 +95,3 @@ def to_time_array(time: list[str] | list[datetime] | TimeArray) -> TimeArray: ) return np.array(output).astype("datetime64[ns]") - - -def normalize_time_tolerance( - tolerance: TimeTolerance, -) -> tuple[np.timedelta64, np.timedelta64]: - """Normalize a TimeTolerance to a tuple of (lower_bound, upper_bound) as np.timedelta64. - - Parameters - ---------- - tolerance : TimeTolerance - Time tolerance value. Can be: - - A single timedelta or np.timedelta64 (interpreted as symmetric +/- bounds) - - A tuple of (timedelta, timedelta) or (np.timedelta64, np.timedelta64) - (interpreted as (lower_bound, upper_bound)) - - Returns - ------- - tuple[np.timedelta64, np.timedelta64] - Tuple of (lower_bound, upper_bound) as np.timedelta64 values. - For a single tolerance value, returns (-tolerance, +tolerance). - For a tuple, returns the normalized bounds. - - Examples - -------- - >>> normalize_time_tolerance(np.timedelta64(1, "h")) - (numpy.timedelta64(-3600,'s'), numpy.timedelta64(3600,'s')) - - >>> normalize_time_tolerance((np.timedelta64(-2, "h"), np.timedelta64(3, "h"))) - (numpy.timedelta64(-7200,'s'), numpy.timedelta64(10800,'s')) - """ - # Handle single value (symmetric tolerance) - if isinstance(tolerance, (timedelta, np.timedelta64)): - tol = np.timedelta64(tolerance) - return (-tol, tol) - - # Handle tuple - if isinstance(tolerance, tuple): - if len(tolerance) != 2: - raise ValueError( - f"TimeTolerance tuple must have 2 elements, got {len(tolerance)}" - ) - - lower, upper = tolerance - - # Convert both to np.timedelta64 - lower_td = np.timedelta64(lower) - upper_td = np.timedelta64(upper) - - # Ensure lower <= upper - if lower_td > upper_td: - raise ValueError( - f"TimeTolerance tuple must have lower_bound <= upper_bound, " - f"got ({lower_td}, {upper_td})" - ) - - return (lower_td, upper_td) - - raise TypeError( - f"TimeTolerance must be timedelta, np.timedelta64, or tuple of 2, " - f"got {type(tolerance)}" - ) diff --git a/earth2studio/utils/type.py b/earth2studio/utils/type.py index 2384d33d3..345f87078 100644 --- a/earth2studio/utils/type.py +++ b/earth2studio/utils/type.py @@ -15,11 +15,9 @@ # limitations under the License. from collections import OrderedDict -from datetime import timedelta import numpy as np -FrameSchema = OrderedDict[str, np.ndarray] CoordSystem = OrderedDict[str, np.ndarray] # Specific dimension custom types @@ -27,10 +25,3 @@ LeadTimeArray = np.ndarray[np.timedelta64] TimeArray = np.ndarray[np.datetime64] FieldArray = np.ndarray[str] - -TimeTolerance = ( - timedelta - | np.timedelta64 - | tuple[timedelta, timedelta] - | tuple[np.timedelta64, np.timedelta64] -) diff --git a/examples/16_cbottle_super_resolution.py b/examples/16_cbottle_super_resolution.py index fa11adc19..60209aa64 100644 --- a/examples/16_cbottle_super_resolution.py +++ b/examples/16_cbottle_super_resolution.py @@ -92,7 +92,6 @@ package, output_resolution=(1024, 1024), super_resolution_window=super_resolution_window, - distilled_model=True, ) # Load the infill model diff --git a/examples/21_stormcast_sda.py b/examples/21_stormcast_sda.py deleted file mode 100644 index 610038dd6..000000000 --- a/examples/21_stormcast_sda.py +++ /dev/null @@ -1,488 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -# %% -""" -StormCast Score-Based Data Assimilation -======================================= - -Running StormCast with guided diffusion posterior sampling to assimilate observations. - -This example demonstrates how to use the StormCast score-based data assimilation (SDA) -model for convection-allowing regional forecasts that incorporate sparse in-situ -observations using diffusion posterior sampling (DPS). -Two forecasts are run—one without observations and one with ISD surface station data -from central United States region to illustrate the impact of data assimilation. - -In this example you will learn: - -- How to load and initialise the StormCast score-based data assimilation (SDA) model -- Fetching HRRR initial conditions and ISD surface observations -- Running the model iteratively with and without observation assimilation -- Comparing assimilated and non-assimilated forecasts -""" -# /// script -# dependencies = [ -# "earth2studio[da-stormcast] @ git+https://github.com/NVIDIA/earth2studio.git", -# "cartopy", -# ] -# /// - -# %% -# Set Up -# ------ -# This example requires the following components: -# -# - Assimilation Model: StormCast SDA :py:class:`earth2studio.models.da.StormCastSDA`. -# - Datasource (state): HRRR analysis :py:class:`earth2studio.data.HRRR`. -# - Datasource (obs): NOAA ISD surface stations :py:class:`earth2studio.data.ISD`. -# - Datasource (conditioning): GFS forecasts :py:class:`earth2studio.data.GFS_FX` -# (loaded automatically by the model). -# -# StormCast score-based data assimilation (SDA) extends StormCast with diffusion -# posterior sampling (DPS) guidance, -# allowing sparse point observations to steer the generative diffusion process. - -# %% -import os - -os.makedirs("outputs", exist_ok=True) -from dotenv import load_dotenv - -load_dotenv() # TODO: make common example prep function - -from collections import OrderedDict -from datetime import timedelta - -import numpy as np -import torch -import xarray as xr -from loguru import logger -from tqdm import tqdm - -logger.remove() -logger.add(lambda msg: tqdm.write(msg, end=""), colorize=True) - -from earth2studio.data import HRRR, ISD, fetch_data -from earth2studio.models.da import StormCastSDA -from earth2studio.utils.coords import map_coords_xr - -package = StormCastSDA.load_default_package() -# Load the model onto the GPU and configure SDA -# sda_std_obs: assumed (normalized) observation noise std (lower = trust obs more) -# sda_gamma: DPS guidance scaling factor (lower = stronger assimilation) -model = StormCastSDA.load_model(package, sda_std_obs=0.1, sda_gamma=1e-4) -model = model.to("cuda:0") - -hrrr = HRRR() - -# %% -# Fetch Initial Conditions -# ------------------------ -# Pull HRRR analysis data for April 3rd 2025, a date that saw a major tornado -# outbreak across the central United States, and select the sub-grid that -# StormCast expects. The model's :py:meth:`init_coords` describes the required -# coordinate system. - -# %% -init_time = np.array([np.datetime64("2025-04-03T18:00")]) -ic = model.init_coords()[0] - -x = fetch_data( - hrrr, - time=init_time, - variable=ic["variable"], - lead_time=np.array([np.timedelta64(0, "h")]), - device="cuda:0", - legacy=False, -) -x = map_coords_xr(x, ic) - -# %% -# Run Without Observations -# ------------------------ -# Step the model forward 6 hours without any observations. This is equivalent to using -# the StormCast prognostic model as it will just use EDM diffusion sampling under the -# hood. Each call to ``model.send(None)`` advances the state by one hour. -# We store only the surface variables used for comparison (u10m, v10m, t2m). - -# %% -nsteps = 6 -plot_vars = ["u10m", "v10m", "t2m"] - -np.random.seed(42) -torch.manual_seed(42) -if torch.cuda.is_available(): - torch.cuda.manual_seed_all(42) - -no_obs_frames = [] -gen = model.create_generator(x.copy()) -x_state = next(gen) # Prime the generator, yields initial state - -for step in tqdm(range(nsteps), desc="No-obs forecast"): - logger.info(f"Running no-obs forecast step {step}") - x_state = gen.send(None) # Advance one hour without observations - no_obs_frames.append(x_state.sel(variable=plot_vars).copy()) - -gen.close() -no_obs_da = xr.concat(no_obs_frames, dim="lead_time") - -# Save to Zarr (convert to numpy for storage) -no_obs_np = no_obs_da.copy(data=no_obs_da.data.get()) -no_obs_np.to_dataset(name="prediction").to_zarr("outputs/21_no_obs.zarr", mode="w") - -# %% -# Fetch Observations and Run With Assimilation -# --------------------------------------------- -# Fetch NOAA Integrated Surface Database (ISD) surface observations from the central -# United States and assimilate them at each forecast step. The observations are fetched -# for the valid time (initialisation time + lead time) so the model assimilates -# temporally relevant data. - -# %% -stations = ISD.get_stations_bbox((32.0, -105.0, 45.0, -90.0)) -isd = ISD(stations=stations, tolerance=timedelta(minutes=15), verbose=False) - -# %% -# Plot ISD Station Locations -# -------------------------- -# Visualise the ISD stations that will provide observations for assimilation. - -# %% -import cartopy -import cartopy.crs as ccrs -import matplotlib.pyplot as plt - -# Fetch a sample to get station locations -sample_df = isd(init_time, ["t2m", "u10m", "v10m"]) -station_lats = sample_df["lat"].values -station_lons = sample_df["lon"].values - -plt.close("all") -fig, ax = plt.subplots(subplot_kw={"projection": ccrs.PlateCarree()}, figsize=(8, 6)) -ax.set_extent([-110, -85, 30, 47], crs=ccrs.PlateCarree()) -ax.add_feature( - cartopy.feature.STATES.with_scale("50m"), linewidth=0.5, edgecolor="black" -) -ax.add_feature(cartopy.feature.LAND, facecolor="lightyellow") -ax.gridlines(draw_labels=True, linewidth=0.3, alpha=0.5) -ax.scatter( - station_lons, - station_lats, - s=20, - marker="x", - transform=ccrs.PlateCarree(), - zorder=3, -) -ax.set_title("ISD Station Locations - Central United States") -plt.savefig("outputs/21_isd_stations.jpg", dpi=150, bbox_inches="tight") - -# %% -# Run Inference With Streaming Observations -# ------------------------------------------ -# At each forecast step, fetch NOAA ISD observations for the current valid time -# and send them to the model generator. The observations will be used in the SDA -# guidance term when sampling the diffusion model effectively steering the generated -# result to align with the stations data from the ISD data based. - -# %% -np.random.seed(42) -torch.manual_seed(42) -if torch.cuda.is_available(): - torch.cuda.manual_seed_all(42) - -obs_frames = [] -gen = model.create_generator(x) -x_state = next(gen) # Prime the generator, yields initial state - -for step in tqdm(range(nsteps), desc="Obs forecast"): - # Fetch observations for the next forecast step's valid time using model coords - x_coords = OrderedDict({d: x_state.coords[d].values for d in x_state.dims}) - oc = model.output_coords((x_coords,))[0] - valid_time = oc["time"] + oc["lead_time"] - obs_df = isd(valid_time, plot_vars) - logger.info(f"Running obs forecast step {step}, {len(obs_df)} obs") - x_state = gen.send(obs_df) # Advance one hour with observations - obs_frames.append(x_state.sel(variable=plot_vars).copy()) - -gen.close() -obs_da = xr.concat(obs_frames, dim="lead_time") - -# Save to Zarr -obs_np = obs_da.copy(data=obs_da.data.get()) -obs_np.to_dataset(name="prediction").to_zarr("outputs/21_with_obs.zarr", mode="w") - -# %% -# Post Processing -# --------------- -# Compare the two forecasts. The top row shows the baseline forecast (no -# observations), the middle row shows the assimilated forecast with observation -# station locations overlaid as unfilled circles, and the bottom row shows the -# difference (assimilated minus baseline). - -# %% -plt.close("all") -variable = "u10m" - -# Load saved forecasts from Zarr stores -no_obs_ds = xr.open_zarr("outputs/21_no_obs.zarr") -obs_ds = xr.open_zarr("outputs/21_with_obs.zarr") - -no_obs_vals = no_obs_ds["prediction"].sel(variable=variable).values -obs_vals = obs_ds["prediction"].sel(variable=variable).values - -# Lambert Conformal projection matching HRRR -projection = ccrs.LambertConformal( - central_longitude=262.5, - central_latitude=38.5, - standard_parallels=(38.5, 38.5), - globe=ccrs.Globe(semimajor_axis=6371229, semiminor_axis=6371229), -) - -fig, axes = plt.subplots( - 3, - nsteps, - subplot_kw={"projection": projection}, - figsize=(4 * nsteps, 8), -) -fig.subplots_adjust(wspace=0.02, hspace=0.08, left=0.1, right=0.9) - -for step in range(nsteps): - lead_hr = step + 1 - no_obs_field = no_obs_vals[0, step] - obs_field = obs_vals[0, step] - diff_field = obs_field - no_obs_field - - vmin = -10 - vmax = 10 - # Row 0: No-obs forecast - ax = axes[0, step] - im0 = ax.pcolormesh( - model.lon, - model.lat, - no_obs_field, - transform=ccrs.PlateCarree(), - cmap="PRGn", - vmin=vmin, - vmax=vmax, - ) - ax.add_feature( - cartopy.feature.STATES.with_scale("50m"), - linewidth=0.5, - edgecolor="black", - zorder=2, - ) - ax.set_title(f"+{lead_hr}h") - - # Row 1: With-obs forecast + station locations - ax = axes[1, step] - im1 = ax.pcolormesh( - model.lon, - model.lat, - obs_field, - transform=ccrs.PlateCarree(), - cmap="PRGn", - vmin=vmin, - vmax=vmax, - ) - ax.scatter( - station_lons, - station_lats, - s=8, - facecolors="none", - edgecolors="black", - linewidths=0.8, - transform=ccrs.PlateCarree(), - zorder=3, - label="Stations", - ) - ax.add_feature( - cartopy.feature.STATES.with_scale("50m"), - linewidth=0.5, - edgecolor="black", - zorder=2, - ) - - # Row 2: Difference (assimilated - baseline) - ax = axes[2, step] - im2 = ax.pcolormesh( - model.lon, - model.lat, - diff_field, - transform=ccrs.PlateCarree(), - cmap="RdBu_r", - vmin=-3, - vmax=3, - ) - ax.add_feature( - cartopy.feature.STATES.with_scale("50m"), - linewidth=0.5, - edgecolor="black", - zorder=2, - ) - -axes[0, 0].text( - -0.07, - 0.5, - "No Obs", - va="bottom", - ha="center", - rotation="vertical", - rotation_mode="anchor", - fontsize=12, - transform=axes[0, 0].transAxes, -) -axes[1, 0].text( - -0.07, - 0.5, - "Obs", - va="bottom", - ha="center", - rotation="vertical", - rotation_mode="anchor", - fontsize=12, - transform=axes[1, 0].transAxes, -) -axes[2, 0].text( - -0.07, - 0.5, - "Difference", - va="bottom", - ha="center", - rotation="vertical", - rotation_mode="anchor", - fontsize=12, - transform=axes[2, 0].transAxes, -) - -# Add colour bars -plt.colorbar(im0, ax=axes[0, -1], shrink=0.6, label=f"{variable} (m/s)") -plt.colorbar(im1, ax=axes[1, -1], shrink=0.6, label=f"{variable} (m/s)") -plt.colorbar(im2, ax=axes[2, -1], shrink=0.6, label=f"{variable} (m/s)") - -plt.tight_layout() -plt.savefig("outputs/21_stormcast_sda_comparison.jpg", dpi=150) - -# %% -# Ground Truth Comparison -# ----------------------- -# Fetch HRRR analysis (ground truth) at each valid forecast time and compute -# the absolute error of both the no-obs and obs forecasts. This shows whether -# assimilation improves accuracy relative to the actual analysis. - -# %% -truth = fetch_data( - hrrr, - time=init_time, - variable=np.array(plot_vars), - lead_time=np.array([np.timedelta64(h + 1, "h") for h in range(nsteps)]), - device="cpu", - legacy=False, -) -ic["variable"] = np.array(plot_vars) - -truth = map_coords_xr(truth, {"hrrr_y": ic["hrrr_y"], "hrrr_x": ic["hrrr_x"]}) -truth_vals = truth.sel(variable=variable).values # [nsteps, hrrr_y, hrrr_x] -no_obs_vals = no_obs_ds["prediction"].sel(variable=variable).values -obs_vals = obs_ds["prediction"].sel(variable=variable).values - -# Compute absolute errors against ground truth -no_obs_err = np.abs(no_obs_vals[0] - truth_vals[0]) -obs_err = np.abs(obs_vals[0] - truth_vals[0]) - -# %% -# Plot absolute errors between the StormCast predictions and HRRR analysis ground truth. -# In later time-steps it is clear that StormCast with SDA sampling using ISD station -# observations has improved accuracy over the vanilla stormcast prediction. - -# %% -plt.close("all") -fig, axes = plt.subplots( - 2, - nsteps, - subplot_kw={"projection": projection}, - figsize=(4 * nsteps, 6), -) -fig.subplots_adjust(wspace=0.02, hspace=0.08, left=0.1, right=0.9) - -err_max = 5 -for step in range(nsteps): - lead_hr = step + 1 - - # Row 0: No-obs absolute error - ax = axes[0, step] - im0 = ax.pcolormesh( - model.lon, - model.lat, - no_obs_err[step], - transform=ccrs.PlateCarree(), - cmap="viridis", - vmin=0, - vmax=err_max, - ) - ax.add_feature( - cartopy.feature.STATES.with_scale("50m"), - linewidth=0.5, - edgecolor="grey", - zorder=2, - ) - ax.set_title(f"+{lead_hr}h") - - # Row 1: Obs absolute error - ax = axes[1, step] - im1 = ax.pcolormesh( - model.lon, - model.lat, - obs_err[step], - transform=ccrs.PlateCarree(), - cmap="viridis", - vmin=0, - vmax=err_max, - ) - ax.add_feature( - cartopy.feature.STATES.with_scale("50m"), - linewidth=0.5, - edgecolor="grey", - zorder=2, - ) - -axes[0, 0].text( - -0.07, - 0.5, - "|No Obs - Truth|", - va="bottom", - ha="center", - rotation="vertical", - rotation_mode="anchor", - fontsize=12, - transform=axes[0, 0].transAxes, -) -axes[1, 0].text( - -0.07, - 0.5, - "|Obs - Truth|", - va="bottom", - ha="center", - rotation="vertical", - rotation_mode="anchor", - fontsize=12, - transform=axes[1, 0].transAxes, -) - -plt.colorbar(im0, ax=axes[0, -1], shrink=0.6, label=f"|Δ{variable}| (m/s)") -plt.colorbar(im1, ax=axes[1, -1], shrink=0.6, label=f"|Δ{variable}| (m/s)") -plt.tight_layout() -plt.savefig("outputs/21_stormcast_sda_gt_comparison.jpg") diff --git a/pyproject.toml b/pyproject.toml index 40e8d7db1..e9d82c3fd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -60,8 +60,7 @@ Changelog = "https://github.com/NVIDIA/earth2studio/blob/main/CHANGELOG.md" data = [ "cdsapi>=0.7.5", "cfgrib >= 0.9.10.3", - "eccodes>=2.39.2", - "eccodeslib>=2.39.2", + "eccodes>=2.38.0", "ecmwf-opendata>=0.3.3", "intake-esgf>=2025.9.26", "pandas<3.0", # https://github.com/esgf2-us/intake-esgf/issues/167 @@ -80,7 +79,8 @@ perturbation = [ "scipy>=1.15.2", ] statistics = [ - "nvidia-physicsnemo>=1.0.1", + "nvidia-physicsnemo>=1.0.1,<2.0", + "pytz", # Remove on physicsnemo 2.0 ] utils = [ "scipy>=1.15.2", @@ -93,19 +93,16 @@ serve = [ "pydantic>=2.0.0", # Redis dependencies "redis>=5.0.0", - "types-redis", "hiredis>=2.0.0", "rq>=1.15.0", # Metrics "prometheus_client>=0.17.0", # Additional utilities + "python-multipart>=0.0.6", + "python-dotenv>=1.0.0", "aiofiles>=23.0.0", "httpx>=0.25.0", "hydra-core>=1.3.0", - "python-dotenv>=1.0.0", - "python-multipart>=0.0.6", - "requests>=2.25.0", - "urllib3>=1.26.0", # Object storage related "cryptography>=41.0.0", "multi-storage-client>=0.44.0", @@ -115,6 +112,7 @@ serve = [ # PX Models ace2 = [ "fme", + "h5py<=3.14.0", "pandas>=2.3.2", "scipy>=1.15.2", ] @@ -135,23 +133,27 @@ atlas = [ "timm", "torch-harmonics", "einops", - "nvidia-physicsnemo>=1.3.0", + "nvidia-physicsnemo>=1.3.0,<2.0", + "pytz", # Remove on physicsnemo 2.0 ] aurora = [ "microsoft-aurora>=1.6.0", ] dlesym = [ - "nvidia-physicsnemo>=1.0.1", + "nvidia-physicsnemo>=1.0.1,<2.0", "earth2grid", "omegaconf>=2.3.0", "hydra-core>=1.3.2", + "pytz", # Remove on physicsnemo 2.0 ] dlwp = [ - "nvidia-physicsnemo>=1.0.1", + "nvidia-physicsnemo>=1.0.1,<2.0", "importlib_metadata", + "pytz", # Remove on physicsnemo 2.0 ] fcn = [ - "nvidia-physicsnemo>=1.0.1", + "nvidia-physicsnemo>=1.0.1,<2.0", + "pytz", # Remove on physicsnemo 2.0 ] fcn3 = [ "makani", @@ -159,6 +161,7 @@ fcn3 = [ "scipy>=1.10.0", "torch-harmonics>=0.8.0", "moviepy", + "pytz", # Remove on physicsnemo 2.0 ] fengwu = [ "onnx", @@ -178,7 +181,8 @@ graphcast = [ "dm-tree>=0.1.9", ] interp-modafno = [ - "nvidia-physicsnemo>=2.0", + "nvidia-physicsnemo>=1.0.1,<2.0", + "pytz", # Remove on physicsnemo 2.0 ] pangu = [ "onnx", @@ -195,17 +199,19 @@ sfno = [ ] stormcast = [ "einops>=0.8.1", - "nvidia-physicsnemo>=2.0", + "nvidia-physicsnemo>=1.0.1,<2.0", "nvtx>=0.2.11", "omegaconf>=2.3.0", "scipy>=1.15.2", "pyproj>=3.7.1", + "pytz", # Remove on physicsnemo 2.0 ] stormscope = [ "natten", - "nvidia-physicsnemo>=2.0", + "nvidia-physicsnemo==1.3.0", "nvtx>=0.2.11", "earth2studio[utils]", + "pytz", # Remove on physicsnemo 2.0 ] # DX Models cbottle = [ @@ -215,9 +221,10 @@ cbottle = [ climatenet = [] corrdiff = [ "einops>=0.8.1", - "nvidia-physicsnemo>=2.0", + "nvidia-physicsnemo>=1.2.0,<2.0", "nvtx>=0.2.11", "scipy>=1.15.2", + "pytz", # Remove on physicsnemo 2.0 ] cyclone = [ "cucim-cu12>=25.4.0", @@ -226,55 +233,36 @@ cyclone = [ ] derived = [] precip-afno = [ - "nvidia-physicsnemo>=1.0.1", + "nvidia-physicsnemo>=1.0.1,<2.0", + "pytz", # Remove on physicsnemo 2.0 ] precip-afno-v2 = [ - "nvidia-physicsnemo>=1.0.1", + "nvidia-physicsnemo>=1.0.1,<2.0", + "pytz", # Remove on physicsnemo 2.0 ] solarradiation-afno = [ - "nvidia-physicsnemo>=1.0.1", + "nvidia-physicsnemo>=1.0.1,<2.0", + "pytz", # Remove on physicsnemo 2.0 ] windgust-afno = [ - "nvidia-physicsnemo>=1.0.1", + "nvidia-physicsnemo>=1.0.1,<2.0", + "pytz", # Remove on physicsnemo 2.0 ] # DA Models da-interp = [ "cupy-cuda12x<14.0.0", "cudf-cu12==26.2.*", ] -da-stormcast = [ - "earth2studio[stormcast]", - "cupy-cuda12x<14.0.0", - "cudf-cu12==26.2.*", -] # All, must not have conflicts all = [ "earth2studio[data,perturbation,statistics,utils]", - "earth2studio[aifs,aifsens,atlas,aurora,dlesym,dlwp,fcn,fcn3,fengwu,interp-modafno,pangu,stormcast,sfno,stormscope,graphcast]", + "earth2studio[ace2,aifs,aifsens,atlas,aurora,dlesym,dlwp,fcn,fcn3,fengwu,interp-modafno,pangu,sfno,stormcast,stormscope,graphcast]", "earth2studio[cbottle,climatenet,corrdiff,precip-afno,cyclone,precip-afno-v2,solarradiation-afno,windgust-afno]", - "earth2studio[da-interp,da-stormcast]", ] # ==== UV configuration ==== [tool.uv] -conflicts = [ - [ - { extra = "ace2" }, - { extra = "atlas" }, - ], - [ - { extra = "ace2" }, - { extra = "fcn3" }, - ], - [ - { extra = "ace2" }, - { extra = "perturbation" }, - ], - [ - { extra = "ace2" }, - { extra = "sfno" }, - ] -] +conflicts = [] default-groups = ["dev", "build"] # Needed for some packages that build with PEP 518 no-build-isolation-package = ["earth2grid", "flash-attn", "natten", "torch-harmonics"] @@ -287,19 +275,12 @@ natten = ["setuptools", "cmake", "torch"] [tool.uv.sources] cfgrib = { git = "https://github.com/NickGeneva/cfgrib.git", rev = "6a9af3173d7050b5fa5d221755f97e6ecb8c3433" } # https://github.com/ecmwf/cfgrib/issues/433 -cbottle = { git = "https://github.com/NVlabs/cBottle.git", rev = "8b8b358466e6b2f50d1779009790002ceb596e72" } +cbottle = { git = "https://github.com/NVlabs/cBottle.git", rev = "1d4435abe730d6b966e983633b466b345d60ac78" } earth2grid = { git = "https://github.com/NVlabs/earth2grid.git", rev = "11dcf1b0787a7eb6a8497a3a5a5e1fdcc31232d3" } -makani = { git = "https://github.com/NVIDIA/makani.git", rev = "b38fcb2799d7dbc146fa60459f3f9823394a8bf1"} +makani = { git = "https://github.com/NVIDIA/makani.git", rev = "fd1a62b9f27aebbc793f0cbafd838a3811de43fd"} graphcast = { git = "https://github.com/google-deepmind/graphcast.git", rev = "7077d40a36db6541e3ed72ccaed1c0d202fa6014" } pytest-testmon = { git = "https://github.com/NickGeneva/pytest-testmon.git", rev = "48cd5ed1b67bf2f2bd9f63335389f262db472806" } fme = { git = "https://github.com/ai2cm/ace.git", rev = "e211cad3e1a5cff0fa84e8d2f0ee67042eff3d4d" } -# Specific source for each of the current torch-harmonics models, avoiding ace2 conflicts until they update torch-harmonics -torch-harmonics = [ - { git = "https://github.com/NVIDIA/torch-harmonics.git", rev = "a632ca748a12bd9f74dbc1e00653317810991f74", extra = "perturbation"}, - { git = "https://github.com/NVIDIA/torch-harmonics.git", rev = "a632ca748a12bd9f74dbc1e00653317810991f74", extra = "atlas"}, - { git = "https://github.com/NVIDIA/torch-harmonics.git", rev = "a632ca748a12bd9f74dbc1e00653317810991f74", extra = "fcn3"}, - { git = "https://github.com/NVIDIA/torch-harmonics.git", rev = "a632ca748a12bd9f74dbc1e00653317810991f74", extra = "sfno"}, -] [[tool.uv.index]] name = "pytorch-cpu" @@ -333,7 +314,6 @@ dev = [ "pytest-skip-slow>=0.0.5", "pytest-testmon>=2.1.3", "pyyaml>=6.0", - "types-redis", "types-requests", "ruff", "pytest-asyncio>=0.26.0", @@ -352,7 +332,7 @@ docs = [ "sphinx-togglebutton>=0.3.0", "myst-parser>=0.18.0", "sphinx-favicon>=1.0.1", - "nvidia-sphinx-theme" + "pydata-sphinx-theme==0.16.1" ] [tool.hatch.version] @@ -382,9 +362,10 @@ exclude = [] "docs/*.py" = ["F401"] "examples/*.py" = ["E402"] "recipes/**/*_notebook.py" = ["E402"] + # Ignore `S101` (assertions) in all `test` files. "test/*.py" = ["S101"] -"serve/server/test/*.py" = ["S101"] +"serve/test/*.py" = ["S101"] # ==== Pytest configuration ==== [tool.pytest.ini_options] diff --git a/recipes/hens/cfg/storm_bernd.yaml b/recipes/hens/cfg/storm_bernd.yaml index 22dc67eaf..678103470 100644 --- a/recipes/hens/cfg/storm_bernd.yaml +++ b/recipes/hens/cfg/storm_bernd.yaml @@ -29,7 +29,7 @@ data_source: _target_: earth2studio.data.GFS # data source class file_output: - path: '/outputs' # directory to which outfiles are written + path: '/output/' # directory to which outfiles are written output_vars: ['t2m','u10m','r500','tp'] thread_io: False # write out in seperate thread (needs further testing) format: # io backend class diff --git a/recipes/hens/src/hens_ensemble.py b/recipes/hens/src/hens_ensemble.py index d11e0622a..021ca2766 100644 --- a/recipes/hens/src/hens_ensemble.py +++ b/recipes/hens/src/hens_ensemble.py @@ -33,11 +33,12 @@ from earth2studio.models.dx import DiagnosticModel from earth2studio.models.px import PrognosticModel from earth2studio.perturbation import Perturbation -from earth2studio.utils.coords import CoordSystem, cat_coords, map_coords, split_coords +from earth2studio.utils.coords import CoordSystem, map_coords, split_coords from earth2studio.utils.time import to_time_array from .hens_utilities import ( TCTracking, + cat_coords, get_batchid_from_ensid, save_corrdiff_output, ) @@ -388,14 +389,8 @@ def __call__(self) -> dict[str, IOBackend]: yy, codia = map_coords(xx, coords, self.dx_ic_dict[dx_name]) yy, codib = dx_model(yy, codia) - # map lat/lon of diagnostic model to forecast model (often there is difference in lat) - _codib = OrderedDict( - {_dim: coords[_dim] for _dim in ["lat", "lon"]} - ) - yy, codib = map_coords(yy, codib, _codib) - - # concatenate tensors along variable dimension - xx, coords = cat_coords((xx, yy), (coords, codib), "variable") + # concatenate diagnostic variable to forecast vars + xx, coords = cat_coords(xx, coords, yy, codib, "variable") # --- CorrDiff models (run after each step, separately) --- # For each CorrDiff model, run the downscaling, collect outputs and coordinates, diff --git a/recipes/hens/src/hens_utilities.py b/recipes/hens/src/hens_utilities.py index a3e26d6a8..8e5a108eb 100644 --- a/recipes/hens/src/hens_utilities.py +++ b/recipes/hens/src/hens_utilities.py @@ -34,6 +34,7 @@ from earth2studio.models.dx import CorrDiff from earth2studio.models.px import PrognosticModel from earth2studio.perturbation import Perturbation +from earth2studio.utils.coords import CoordSystem, map_coords from earth2studio.utils.time import to_time_array from .hens_utilities_reproduce import ( @@ -1023,6 +1024,55 @@ def get_batchid_from_ensid( return batch_id +def cat_coords( + xx: torch.Tensor, + cox: CoordSystem, + yy: torch.Tensor, + coy: CoordSystem, + dim: str = "variable", +) -> tuple[torch.Tensor, CoordSystem]: + """ + concatenate data along coordinate dimension. + + Parameters + ---------- + xx : torch.Tensor + First input tensor which to concatenate + cox : CoordSystem + Ordered dict representing coordinate system that describes xx + yy : torch.Tensor + Second input tensor which to concatenate + coy : CoordSystem + Ordered dict representing coordinate system that describes yy + dim : str + name of dimension along which to concatenate + + Returns + ------- + tuple[torch.Tensor, CoordSystem] + Tuple containing output tensor and coordinate OrderedDict from + concatenated data. + """ + + if dim not in cox: + raise ValueError(f"dim {dim} is not in coords: {list(cox)}.") + if dim not in coy: + raise ValueError(f"dim {dim} is not in coords: {list(coy)}.") + + # fix difference in latitude + _cox = cox.copy() + _cox["lat"] = coy["lat"] + xx, cox = map_coords(xx, cox, _cox) + + coords = cox.copy() + dim_index = list(coords).index(dim) + + zz = torch.cat((xx, yy), dim=dim_index) + coords[dim] = np.append(cox[dim], coy[dim]) + + return zz, coords + + def save_corrdiff_output(cd_output_dict: dict, save_path: str) -> None: """ Save CorrDiff model output to a NetCDF file as a Dataset with one variable per CorrDiff output. diff --git a/recipes/s2s/src/s2s_ensemble.py b/recipes/s2s/src/s2s_ensemble.py index 9dcb70ab4..7d2beaed7 100644 --- a/recipes/s2s/src/s2s_ensemble.py +++ b/recipes/s2s/src/s2s_ensemble.py @@ -18,7 +18,6 @@ from concurrent.futures import Future, ThreadPoolExecutor from datetime import datetime from math import ceil -from typing import cast import numpy as np import torch @@ -30,11 +29,12 @@ from earth2studio.models.dx import DiagnosticModel from earth2studio.models.px import PrognosticModel from earth2studio.perturbation import Perturbation -from earth2studio.utils.coords import CoordSystem, cat_coords, map_coords, split_coords +from earth2studio.utils.coords import CoordSystem, map_coords, split_coords from earth2studio.utils.time import to_time_array from .s2s_utilities import ( calculate_torch_seed, + cat_coords, get_batchid_from_ensid, run_with_rank_ordered_execution, ) @@ -184,16 +184,12 @@ def fetch_ics( IC times """ self.time = to_time_array(time) - self.x0, self.coords0 = cast( - tuple[torch.Tensor, CoordSystem], - fetch_data( - source=data, - time=time, - variable=self.prognostic_ic["variable"], - lead_time=self.prognostic_ic["lead_time"], - device="cpu", - legacy=True, - ), + self.x0, self.coords0 = fetch_data( + source=data, + time=time, + variable=self.prognostic_ic["variable"], + lead_time=self.prognostic_ic["lead_time"], + device="cpu", ) logger.success(f"Fetched data from {data.__class__.__name__}") @@ -333,7 +329,7 @@ def write(self, xx_sub: torch.Tensor, coords_sub: CoordSystem) -> None: for k in self.io_dict.keys(): if self.writer_executor is not None: future = self.writer_executor.submit( - self.io_dict[k].write, *split_coords(xx_sub, coords_sub) # type: ignore[arg-type] + self.io_dict[k].write, *split_coords(xx_sub, coords_sub) ) self.writer_threads.append(future) else: @@ -375,7 +371,7 @@ def __call__(self) -> dict[str, ZarrBackend]: yy, codib = dx_model(yy, codia) # concatenate diagnostic variable to forecast vars - xx, coords = cat_coords((xx, yy), (coords, codib), "variable") + xx, coords = cat_coords(xx, coords, yy, codib, "variable") # pass output variables to io backend for k in self.io_dict.keys(): diff --git a/recipes/s2s/src/s2s_utilities.py b/recipes/s2s/src/s2s_utilities.py index c27655c78..227a5e688 100644 --- a/recipes/s2s/src/s2s_utilities.py +++ b/recipes/s2s/src/s2s_utilities.py @@ -38,7 +38,7 @@ from earth2studio.models.auto import Package from earth2studio.models.px import PrognosticModel from earth2studio.perturbation import Perturbation -from earth2studio.utils.coords import handshake_coords +from earth2studio.utils.coords import CoordSystem, handshake_coords, map_coords from earth2studio.utils.time import to_time_array @@ -943,6 +943,55 @@ def get_batchid_from_ensid( return batch_id +def cat_coords( + xx: torch.Tensor, + cox: CoordSystem, + yy: torch.Tensor, + coy: CoordSystem, + dim: str = "variable", +) -> tuple[torch.Tensor, CoordSystem]: + """ + concatenate data along coordinate dimension. + + Parameters + ---------- + xx : torch.Tensor + First input tensor which to concatenate + cox : CoordSystem + Ordered dict representing coordinate system that describes xx + yy : torch.Tensor + Second input tensor which to concatenate + coy : CoordSystem + Ordered dict representing coordinate system that describes yy + dim : str + name of dimension along which to concatenate + + Returns + ------- + tuple[torch.Tensor, CoordSystem] + Tuple containing output tensor and coordinate OrderedDict from + concatenated data. + """ + + if dim not in cox: + raise ValueError(f"dim {dim} is not in coords: {list(cox)}.") + if dim not in coy: + raise ValueError(f"dim {dim} is not in coords: {list(coy)}.") + + # fix difference in latitude + _cox = cox.copy() + _cox["lat"] = coy["lat"] + xx, cox = map_coords(xx, cox, _cox) + + coords = cox.copy() + dim_index = list(coords).index(dim) + + zz = torch.cat((xx, yy), dim=dim_index) + coords[dim] = np.append(cox[dim], coy[dim]) + + return zz, coords + + def calculate_torch_seed(s: str) -> int: """Calculates torch seed based on a given string. String s is used as input to sha256 hash algorithm. diff --git a/serve/Dockerfile b/serve/Dockerfile index d0d368855..6c9cde587 100644 --- a/serve/Dockerfile +++ b/serve/Dockerfile @@ -11,6 +11,7 @@ ENV EARTH2STUDIO_PACKAGE_TIMEOUT=1200 ENV FORCE_CUDA_EXTENSION=1 ENV PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True +ARG MAKANI_HASH=28f38e3e929ed1303476518552c64673bbd6f722 ARG E2G_HASH=11dcf1b0787a7eb6a8497a3a5a5e1fdcc31232d3 ARG E2S_HASH=8ca8771c6be6ca051e082d41b99378fa14b58d9f @@ -18,31 +19,21 @@ WORKDIR /workspace COPY --from=ghcr.io/astral-sh/uv:0.7.3 /uv /uvx /bin/ RUN uv pip install --system --break-system-packages --no-build-isolation torch-harmonics==0.8.0 +RUN uv pip install --system --break-system-packages "makani @ git+https://github.com/NVIDIA/makani.git@${MAKANI_HASH}" RUN uv pip install --system --break-system-packages --no-build-isolation "earth2grid @ git+https://github.com/NVlabs/earth2grid@${E2G_HASH}" RUN uv pip install --system --break-system-packages natten==0.21.5+torch2100cu130 -f https://whl.natten.org +RUN uv pip install --system --break-system-packages "earth2studio[dlwp,dlesym,pangu,sfno,stormcast,fcn3] @ git+https://github.com/NVIDIA/earth2studio.git@${E2S_HASH}" +RUN uv pip install --system --break-system-packages "earth2studio[cbottle,corrdiff,cyclone] @ git+https://github.com/NVIDIA/earth2studio.git@${E2S_HASH}" +RUN uv pip install --system --break-system-packages "earth2studio[data,perturbation,statistics] @ git+https://github.com/NVIDIA/earth2studio.git@${E2S_HASH}" RUN uv pip install --system --break-system-packages cartopy xskillscore matplotlib -# Install the requirements for stormcast. -RUN pip uninstall -y torch-harmonics && \ - FORCE_CUDA_EXTENSION=1 uv pip install --system --break-system-packages --no-build-isolation torch-harmonics==0.8.0 - # Install the requirements for the inference server. COPY serve /workspace/earth2studio-project/serve -COPY examples /workspace/earth2studio-project/examples -RUN ln -s /outputs /workspace/earth2studio-project/examples/outputs -# Config and scripts live under serve/server/ after COPY serve -ENV SCRIPT_DIR=/workspace/earth2studio-project/serve/server/scripts -ENV CONFIG_DIR=/workspace/earth2studio-project/serve/server/conf -ENV WORKFLOW_DIR=/workspace/earth2studio-project/serve/server/example_workflows - -# Install local earth2studio from repo, then various extras and serve requirements. -# Copy project root files needed for pip install (pyproject.toml is at repo root, not inside earth2studio). -COPY pyproject.toml README.md /workspace/earth2studio-project/ -COPY earth2studio /workspace/earth2studio-project/earth2studio +RUN cd / && mkdir /workspace/earth2studio-project/examples && ln -s /outputs /workspace/earth2studio-project/examples/outputs RUN apt-get update && apt-get install -y redis-server && \ cd /workspace/earth2studio-project && \ - uv pip install --system --break-system-packages ".[dlwp,dlesym,pangu,sfno,stormcast,fcn3,serve,cbottle,corrdiff,cyclone,data,perturbation,statistics]" && \ - uv pip install --system --break-system-packages -r serve/server/requirements.txt && \ - rm -rf /workspace/earth2studio-project/earth2studio /workspace/earth2studio-project/pyproject.toml /workspace/earth2studio-project/README.md + uv pip install --system --break-system-packages -r serve/inferenceserver/requirements.txt + +CMD ["/workspace/earth2studio-project/serve/inferenceserver/scripts/startup.sh"] -CMD ["/workspace/earth2studio-project/serve/server/scripts/startup.sh"] +#RUN python -c "import earth2studio; print(f'Earth2Studio version: {earth2studio.__version__}')" diff --git a/serve/client/README.md b/serve/client/README.md deleted file mode 100644 index 5fff2298d..000000000 --- a/serve/client/README.md +++ /dev/null @@ -1,442 +0,0 @@ -# Earth2Studio Python Client SDK - -A Python client library for the Earth2Studio REST API. - -The client SDK provides two interfaces to remotely access the Earth2Studio API server: - -1. **`earth2studio.serve.client.e2client.RemoteEarth2Workflow`** - High-level interface for seamless - integration with Earth2Studio and Xarray. Recommended for most use cases. -2. **`earth2studio.serve.client.client.Earth2StudioClient`** - Low-level interface for direct API access - and result file management. Useful for custom workflows and integrations. - -Please refer to the server's `README_workflows.md` and `README_earth2workflows.md` for -information about the server-side interface. - -## Quick Start - -To use a remote workflow, first initialize the `RemoteEarth2Workflow` object and then -call it using the workflow parameters. Here, we access the `DeterministicEarth2Workflow` -included in the server examples and get the results as an Earth2Studio data source. - -```python -from datetime import datetime, timedelta -import os -from earth2studio.serve.client.e2client import RemoteEarth2Workflow - -# Create client (configurable via environment variable) -api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") -workflow = RemoteEarth2Workflow( - api_url, - workflow_name="deterministic_earth2_workflow", - device='cuda' # use 'cpu' if you don't have a GPU on the client machine -) - -data_source = workflow(start_time=[datetime(2025, 8, 21, 6)]).as_data_source() -# get temperature forecast 24 h after start time -t2m = data_source(datetime(2025, 8, 22, 6), "t2m") -t2m_np = t2m.values # get the results as a NumPy array -``` - -Data access is lazy if the workflow produces Zarr files: In the above example, only the -temperature will be downloaded and the actual download happens on the last line of code. - -## Advanced Usage - -In the examples below, we initialize `workflow` as in the Quick Start above, -unless otherwise mentioned. - -### Access the result dataset directly - -You can directly access the underlying Xarray Dataset: - -```python -ds = workflow(start_time=[datetime(2025, 8, 21, 6)]).as_dataset() -# same result as getting data from `data_source` in the Quick Start example -t2m = ds["t2m"].sel(lead_time=np.timedelta64(timedelta(hours=24))) -t2m_np = t2m.values # NumPy array -``` - -### Iterate over results - -Similar to Earth2Studio model iterators, we can iterate over the results as -`(Tensor, CoordSystem)` tuples: - -```python -model = workflow(start_time=[datetime(2025, 8, 21, 6)]).as_model() -for (x, coords) in model.create_iterator(): - # computes the mean on GPU if we used `device='cuda'` when creating the Workflow - print(x.mean().cpu().numpy()) -``` - -This can be used to provide an input to a local workflow that expects a prognostic -model. The example `diagnostic_analysis.py` shows how to use this to run a local -diagnostic. - -### Save reference to remote results - -You can create a `RemoteEarth2WorkflowResult` manually in order to access the results later. -This allows you to do other work and even close Python while waiting for results to complete. - -```python -result = workflow(start_time=[datetime(2025, 8, 21, 6)]) -print(result.execution_id) # write down the execution id -exec_1766159252_5f779460 - -# *** After restarting Python *** - -from datetime import datetime -import os -from earth2studio.serve.client.e2client import RemoteEarth2Workflow, RemoteEarth2WorkflowResult - -# re-initialize workflow -api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") -workflow = RemoteEarth2Workflow( - api_url, - workflow_name="deterministic_earth2_workflow", - device='cuda' # use 'cpu' if you don't have a GPU on the client machine -) - -# manually create result object with the execution_id from earlier -execution_id = "exec_1766159252_5f779460" -result = RemoteEarth2WorkflowResult(workflow, execution_id) - -# now we can access the results as before -data_source = result.as_data_source() # will block until results are available -t2m = data_source(datetime(2025, 8, 22, 6), "t2m") -``` - -### Use remote workflow to condition a local model - -Use the results as a low-resolution conditioning for a StormCast model running locally: - -```python -from earth2studio.data import HRRR -from earth2studio.models.px import StormCast -from earth2studio.io import NetCDF4Backend - -fcn3_workflow = RemoteEarth2Workflow( - api_url, - workflow_name="stormcast_fcn3_workflow", - device='cuda' # use 'cpu' if you don't have a GPU on the client machine -) - -hrrr_ic = HRRR() -stormcast = StormCast.from_pretrained() -io = NetCDF4Backend("stormcast_result.nc") -conditioning_source = fcn3_workflow( - start_time=[datetime(2025, 8, 21, 6)], - num_hours=num_steps, - run_stormcast=False -).as_data_source() -stormcast.conditioning_data_source = conditioning_source -num_hours=5 - -run.deterministic( - [datetime(2025, 8, 21, 6)], - num_hours, - stormcast, - hrrr_ic, - io, - device='cuda', -) -``` - -### Object Storage (S3) Support - -The client SDK seamlessly supports both local server storage and object storage -(S3/CloudFront). When the server is configured to use object storage, all the examples -in this README work without any code changes. The client automatically detects the -storage type from the server response and handles downloads appropriately: - -- **Server storage**: Files are downloaded directly from the inference server -- **S3 storage**: Files are downloaded from S3 using pre-signed CloudFront URLs - -This means you can use the same code regardless of how the server is configured: - -```python -# Same whether server uses local or S3 storage -result = workflow(start_time=[datetime(2025, 8, 21, 6)]) -ds = result.as_dataset() # Fetches from S3 if configured -``` - -### Download result files directly - -`Earth2StudioClient` gives lower-level access than `RemoteEarth2Workflow`. Use it to -download individual result files programmatically. - -Initialize the client: - -```python -import os -from datetime import datetime -from earth2studio.serve.client.client import Earth2StudioClient, InferenceRequest - -# Create client (configurable via environment variable) -api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") -client = Earth2StudioClient(api_url, workflow_name="deterministic_earth2_workflow") - -# Check API health -health = client.health_check() -print(f"API Status: {health.status}") -``` - -Now, submit a workflow and download result files directly: - -```python -parameters = {"start_time": [datetime(2025, 8, 21, 6)]} -request = InferenceRequest(parameters=parameters) -request_result = client.run_inference_sync(request) - -# Download individual output files (works with both local and S3 storage) -for file in request_result.output_files[:5]: # limit to first 5 files - print(f"Downloading: {file.path}") - content = client.download_result(request_result, file.path) - print(f"Downloaded {file.path}: {len(content.getvalue())} bytes") - - # Optionally save to disk - # with open(file.path.split("/")[-1], "wb") as f: - # f.write(content.getvalue()) -``` - -To get the URL of a result file for use with external tools like `wget` (server storage only): - -```python -from urllib.parse import urljoin - -result_root = client.result_root_path(request_result) -result_path = request_result.result_paths()[0] - -result_url = urljoin(api_url, f"{result_root}{result_path}") -print(result_url) -# e.g. http://localhost:8000/v1/infer/.../results/.../results.zarr -``` - -### Asynchronous usage of `Earth2StudioClient` - -For long-running forecasts, you can submit requests and check status separately: - -```python -import time -from earth2studio.serve.client.models import RequestStatus - -# Submit request -response = client.submit_inference_request(request) -execution_id = response.execution_id -print(f"Submitted request: {execution_id}") - -# Check status periodically -while True: - status = client.get_request_status(execution_id) - print(f"Status: {status.status.value}, Step: {status.progress.current_step}") - - if status.status in [RequestStatus.COMPLETED, RequestStatus.FAILED]: - break - - time.sleep(10) - -# Get results when completed -if status.status == RequestStatus.COMPLETED: - request_result = client.get_request_results(execution_id) - print(f"Forecast completed with {len(request_result.output_files)} output files") - -# Now we can use ``request_result`` as in the above example -``` - -### Authentication - -If your server requires authentication, you can pass a Bearer token to the client: - -```python -# With authentication token -client = Earth2StudioClient( - base_url="http://localhost:8000", - workflow_name="deterministic_earth2_workflow", - token="your-api-token" # Bearer token for authenticated requests -) - -workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="deterministic_earth2_workflow", - token="your-api-token" -) -``` - -The token is sent as a Bearer token in the `Authorization` header with all API requests. - -### Custom HTTP Settings - -You can modify the settings for HTTP access. The HTTP-related parameters are -identical for `Earth2StudioClient` and `RemoteEarth2Workflow`. - -```python -client = Earth2StudioClient( - base_url="http://localhost:8000", - timeout=60.0, # Request timeout - max_retries=5, # Maximum retries - retry_backoff_factor=1.0, # Retry backoff factor - token="your-api-token" # Optional authentication token -) - -workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - timeout=60.0, # Request timeout - max_retries=5, # Maximum retries - retry_backoff_factor=1.0, # Retry backoff factor - token="your-api-token" # Optional authentication token -) -``` - -## API Reference - -### RemoteEarth2Workflow - -High-level client for Earth2Studio-compatible remote inference workflows. - -#### RemoteEarth2Workflow constructor - -```python -RemoteEarth2Workflow( - base_url: str, - workflow_name: str, - device: str | torch.device | None = None, - xr_args: dict[str, Any] | None = None, - **client_kwargs -) -``` - -**Args:** - -- `base_url`: URL of the Earth2Studio API server -- `workflow_name`: Name of the workflow to execute on the server -- `device`: Device for tensor operations (e.g., "cuda", "cpu"). -- `xr_args`: Additional keyword arguments passed to xarray.open_dataset/xarray.open_zarr -- `**client_kwargs`: Additional arguments passed to Earth2StudioClient - -#### RemoteEarth2Workflow methods - -- `__call__(**kwargs)` → `RemoteEarth2WorkflowResult`: Submit inference with parameters -- `to(device)` → `RemoteEarth2Workflow`: Move workflow to specified device - -### RemoteEarth2WorkflowResult - -Result object for accessing remote inference outputs. - -#### Attributes - -- `execution_id`: Unique identifier for the inference execution -- `workflow`: Parent RemoteEarth2Workflow instance - -#### RemoteEarth2WorkflowResult methods - -- `as_dataset()` → `xr.Dataset`: Wait for completion and return result as xarray Dataset -- `as_data_source()` → `InferenceOutputSource`: Wait for completion and return as Earth2Studio data source -- `as_model(iter_coord="lead_time")` → `InferenceOutputModel`: Model iterable over time steps - -### Earth2StudioClient - -Low-level client class for direct API access and result file management. - -#### Earth2StudioClient constructor - -```python -Earth2StudioClient( - base_url: str = "http://localhost:8000", - workflow_name: str = "deterministic_earth2_workflow", - timeout: float = 30.0, - max_retries: int = 3, - retry_backoff_factor: float = 0.3, - token: str | None = None -) -``` - -**Args:** - -- `base_url`: URL of the Earth2Studio API server -- `workflow_name`: Name of the workflow to execute on the server -- `timeout`: Request timeout in seconds -- `max_retries`: Maximum number of retries for failed requests -- `retry_backoff_factor`: Backoff factor between retries -- `token`: Optional Bearer token for authenticated requests - -#### Earth2StudioClient methods - -- `health_check()` → `HealthStatus`: Check API health -- `submit_inference_request(request)` → `InferenceRequestResponse`: Submit request -- `get_request_status(request_id)` → `InferenceRequestStatus`: Get status -- `get_request_results(request_id, timeout=None)` → `InferenceRequestResults`: Get results -- `wait_for_completion(request_id, poll_interval=5.0, timeout=None)` → - `InferenceRequestResults`: Wait for completion -- `run_inference_sync(request, poll_interval=5.0, timeout=None)` → `InferenceRequestResults`: - Submit and wait for completion -- `result_root_path(result)` → `str`: Get root URL path for result files -- `download_result(result, path, timeout=None)` → `io.BytesIO`: Download a result file - -### Data Models - -- `InferenceRequest`: Inference request payload with workflow parameters -- `InferenceRequestResponse`: Response when submitting a request (contains execution_id) -- `InferenceRequestStatus`: Status information for an inference request -- `InferenceRequestResults`: Results of a completed request with output file paths -- `OutputFile`: Information about an output file (name, path, size) -- `HealthStatus`: API health status response -- `ProgressInfo`: Progress information (progress string, current_step, total_steps) - -### Enums - -- `RequestStatus`: Request status values - - Initial: `ACCEPTED`, `QUEUED` - - Processing: `RUNNING` - - Final: `COMPLETED`, `FAILED`, `CANCELLED`, `PENDING_RESULTS` - -## Examples - -The `examples/` directory contains complete, runnable example scripts: - -### `basic_forecast.py` - Basic Deterministic Forecast - -A comprehensive example showing how to run a simple deterministic forecast using -`RemoteEarth2Workflow`. - -### `downscaled_forecast.py` - Downscaled Forecast - -Example demonstrating high-resolution downscaled forecasting using a remote global -forecast model with a local downscaling model. - -### `diagnostic_analysis.py` - Diagnostic Analysis - -Specialized example for running local diagnostic models with remote inference results. - -### Running the Examples - -Each example can be run independently: - -```bash -cd examples/ - -# Run basic deterministic forecast -python basic_forecast.py - -# Run downscaled forecast -python downscaled_forecast.py - -# Run diagnostic analysis -python diagnostic_analysis.py -``` - -**Prerequisites:** - -- Earth2Studio API server running -- Client SDK installed with dependencies -- Sufficient disk space for forecast outputs - -**Configuration:** - -All examples support configuring the API endpoint via environment variable: - -```bash -# Set custom API endpoint (optional) -export EARTH2STUDIO_API_URL="http://your-api-server:8000" - -# Or use default localhost:8000 if not set -python basic_forecast.py -``` diff --git a/serve/client/examples/basic_forecast.py b/serve/client/examples/basic_forecast.py deleted file mode 100644 index a2cd9236f..000000000 --- a/serve/client/examples/basic_forecast.py +++ /dev/null @@ -1,116 +0,0 @@ -#!/usr/bin/env python3 -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -""" -Basic deterministic forecast example using Earth2Studio Client SDK. - -This example shows how to: -1. Access a remote workflow -2. Submit a simple deterministic forecast request and retrieve results as xarray dataset -3. Extract 2-meter temperature data at a specific location -4. Create and save a matplotlib line plot of the forecast -""" - -import os -from datetime import datetime - -import matplotlib.pyplot as plt -import torch - -from earth2studio.serve.client.e2client import RemoteEarth2Workflow - -# /// script -# dependencies = [ -# "torch", -# "earth2studio[serve]>=0.9.0", -# "matplotlib>=3.3.0", -# ] -# /// - - -def main( - plot_file: str = "t2m_plot.png", - lat: float = 37.4, - lon: float = -122.0, - start_time: datetime = datetime(2025, 8, 21, 6), - num_steps: int = 10, -) -> None: - """Run a basic deterministic forecast and save a t2m plot. - - Args: - plot_file: Path to save the temperature plot (default: 't2m_plot.png') - lat: Latitude for temperature extraction (default: 37.4) - lon: Longitude for temperature extraction (default: -122.0) - start_time: Forecast initialisation time (default: 2025-08-21 06:00 UTC) - num_steps: Number of forecast time steps (default: 10) - """ - - # Create client (configurable via environment variable) - api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") - api_token = os.getenv("EARTH2STUDIO_API_TOKEN", "") - workflow = RemoteEarth2Workflow( - api_url, - workflow_name="deterministic_earth2_workflow", - device="cuda" if torch.cuda.is_available() else "cpu", - token=api_token, - ) - - # Check if API is healthy - try: - health = workflow.client.health_check() - print(f"✓ API Status: {health.status}") - except Exception as e: - print(f"✗ API not available: {e}") - return - - # Call workflow and get result - try: - ds = workflow(start_time=[start_time], num_steps=num_steps).as_dataset() - except Exception as e: - print(f"\n❌ Forecast failed: {e}") - return - - # Extract t2m data for the specified location - t2m = ds["t2m"].sel(lat=lat, lon=lon, method="nearest").values.ravel() - - # Extract time coordinate - time_coord = ds["lead_time"].values.astype("timedelta64[h]") - - # Create line plot of temperature - print(f" Creating plot: {plot_file}") - fig, ax = plt.subplots(figsize=(10, 6)) - ax.plot(time_coord, t2m, marker="o", linewidth=2, markersize=6) - ax.set_xlabel("Lead Time (h)", fontsize=12) - ax.set_ylabel("2-meter Temperature (K)", fontsize=12) - ax.set_title( - f"Temperature Forecast starting {start_time} at {lat}°N, {lon}°E", - fontsize=14, - fontweight="bold", - ) - ax.grid(True, alpha=0.3) - - # Save the plot - fig.tight_layout() - fig.savefig(plot_file, dpi=150, bbox_inches="tight") - plt.close(fig) - - print("\n🎉 Forecast complete!") - print(f" Plot saved to: {plot_file}") - - -if __name__ == "__main__": - main() diff --git a/serve/client/examples/diagnostic_analysis.py b/serve/client/examples/diagnostic_analysis.py deleted file mode 100644 index d4040b0e8..000000000 --- a/serve/client/examples/diagnostic_analysis.py +++ /dev/null @@ -1,155 +0,0 @@ -#!/usr/bin/env python3 -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -""" -Forecast example with local diagnostic using Earth2Studio Client SDK. - -This example shows how to: -1. Access a remote workflow -2. Submit a simple deterministic forecast request and retrieve results as xarray dataset -3. Run precipitation diagnostic model locally to get precipitation -4. Create and save a matplotlib line plot of the precipitation forecast -""" - -import os -from datetime import datetime, timedelta - -import matplotlib.pyplot as plt -import torch -import xarray as xr - -from earth2studio.io import XarrayBackend # type: ignore[import-untyped] -from earth2studio.models.dx import PrecipitationAFNO # type: ignore[import-untyped] -from earth2studio.run import diagnostic # type: ignore[import-untyped] -from earth2studio.serve.client.e2client import RemoteEarth2Workflow -from earth2studio.utils.type import ( # type: ignore[import-untyped] - LeadTimeArray, - TimeArray, - VariableArray, -) - -# /// script -# dependencies = [ -# "torch", -# "earth2studio[serve]>=0.9.0", -# "matplotlib>=3.3.0", -# ] -# /// - - -def main( - plot_file: str = "tp_plot.png", - lat: float = 37.4, - lon: float = -122.0, - start_time: datetime = datetime(2025, 8, 21, 6), - num_steps: int = 10, -) -> None: - """Run a basic deterministic forecast and save a t2m plot. - - Args: - plot_file: Path to save the precipitation plot (default: 'tp_plot.png') - lat: Latitude for precipitation extraction (default: 37.4) - lon: Longitude for precipitation extraction (default: -122.0) - start_time: Start time for the forecast (default: 2025-08-21 06:00 UTC) - num_steps: Number of forecast time steps (default: 10) - """ - - # Create client (configurable via environment variable) - api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") - api_token = os.getenv("EARTH2STUDIO_API_TOKEN", "") - workflow = RemoteEarth2Workflow( - api_url, - workflow_name="deterministic_earth2_workflow", - device="cuda" if torch.cuda.is_available() else "cpu", - token=api_token, - ) - - # Check if API is healthy - try: - health = workflow.client.health_check() - print(f"✓ API Status: {health.status}") - except Exception as e: - print(f"✗ API not available: {e}") - return - - # Call workflow and get result as an iterable model - try: - model = workflow(start_time=[start_time], num_steps=num_steps).as_model() - except Exception as e: - print(f"\n❌ Forecast failed: {e}") - return - - precip_afno = PrecipitationAFNO.from_pretrained() - io = XarrayBackend() - data = NullDataSource() - - diagnostic( - [start_time], num_steps, model, precip_afno, data, io, device=model.device - ) - - # Extract total precipitation for the specified location - ds = io.root - tp = ds["tp"].sel(lat=lat, lon=lon, method="nearest").values.ravel() - - # Extract time coordinate - time_coord = ds["lead_time"].values.astype("timedelta64[h]") - - # Create line plot of total precipitation - print(f" Creating plot: {plot_file}") - fig, ax = plt.subplots(figsize=(10, 6)) - ax.plot(time_coord, tp, marker="o", linewidth=2, markersize=6) - ax.set_xlabel("Lead Time (h)", fontsize=12) - ax.set_ylabel("Total Precipitation (m)", fontsize=12) - ax.set_title( - f"Precipitation Forecast starting {start_time} at {lat}°N, {lon}°E", - fontsize=14, - fontweight="bold", - ) - ax.grid(True, alpha=0.3) - - # Save the plot - fig.tight_layout() - fig.savefig(plot_file, dpi=150, bbox_inches="tight") - plt.close(fig) - - print("\n🎉 Forecast complete!") - print(f" Plot saved to: {plot_file}") - - -class NullDataSource: - """Minimal data source that returns empty DataArray for diagnostic input.""" - - def __call__( - self, - time: datetime | list[datetime] | TimeArray, - lead_time: timedelta | list[timedelta] | LeadTimeArray, - variable: str | list[str] | VariableArray, - ) -> xr.DataArray: - """Return an empty DataArray (unused coords for local diagnostic).""" - return xr.DataArray() - - async def fetch( - self, - time: datetime | list[datetime] | TimeArray, - lead_time: timedelta | list[timedelta] | LeadTimeArray, - variable: str | list[str] | VariableArray, - ) -> xr.DataArray: - return xr.DataArray() - - -if __name__ == "__main__": - main() diff --git a/serve/client/examples/downscaled_forecast.py b/serve/client/examples/downscaled_forecast.py deleted file mode 100644 index 190a155f1..000000000 --- a/serve/client/examples/downscaled_forecast.py +++ /dev/null @@ -1,128 +0,0 @@ -#!/usr/bin/env python3 -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -""" -Forecast example with local diagnostic using Earth2Studio Client SDK. - -This example shows how to: -1. Access a remote workflow -2. Submit a simple deterministic forecast request and retrieve results as xarray dataset -3. Run precipitation diagnostic model locally to get precipitation -4. Create and save a matplotlib line plot of the precipitation forecast -""" - -import os -from datetime import datetime - -import matplotlib.pyplot as plt -import torch - -from earth2studio.data import HRRR # type: ignore[import-untyped] -from earth2studio.io import XarrayBackend # type: ignore[import-untyped] -from earth2studio.models.px import StormCast # type: ignore[import-untyped] -from earth2studio.run import deterministic # type: ignore[import-untyped] -from earth2studio.serve.client.e2client import RemoteEarth2Workflow - -# /// script -# dependencies = [ -# "torch", -# "earth2studio[serve]>=0.9.0", -# "matplotlib>=3.3.0", -# ] -# /// - - -def main( - plot_file: str = "downscaled_t2m_plot.png", - y: float = 200.0, - x: float = 200.0, - start_time: datetime = datetime(2025, 8, 21, 6), - num_steps: int = 10, -) -> None: - """Run a remote FourCastNet 3 forecast and run a StormCast downscaling locally. - - Args: - plot_file: Path to save the temperature plot (default: 'downscaled_t2m_plot.png') - x: HRRR x coordinate for temperature extraction (default: 200.0) - y: HRRR y coordinate for temperature extraction (default: 200.0) - """ - - # Create client (configurable via environment variable) - api_url = os.getenv("EARTH2STUDIO_API_URL", "http://localhost:8000") - api_token = os.getenv("EARTH2STUDIO_API_TOKEN", "") - workflow = RemoteEarth2Workflow( - api_url, - workflow_name="stormcast_fcn3_workflow", - device="cuda" if torch.cuda.is_available() else "cpu", - token=api_token, - ) - - # Check if API is healthy - try: - health = workflow.client.health_check() - print(f"✓ API Status: {health.status}") - except Exception as e: - print(f"✗ API not available: {e}") - return - - # Call workflow and get result as a data source - try: - conditioning_source = workflow( - start_time=start_time, num_hours=num_steps, run_stormcast=False - ).as_data_source() - except Exception as e: - print(f"\n❌ Forecast failed: {e}") - return - - stormcast = StormCast.from_pretrained() - stormcast.conditioning_data_source = conditioning_source - io = XarrayBackend() - hrrr_ic = HRRR() - - deterministic( - [start_time], num_steps, stormcast, hrrr_ic, io, device=workflow.device - ) - - # Extract t2m data for the specified location - ds = io.root - t2m = ds["t2m"].sel(hrrr_x=x, hrrr_y=y, method="nearest").values.ravel() - - # Extract time coordinate - time_coord = ds["lead_time"].values.astype("timedelta64[h]") - - # Create line plot of temperature - print(f" Creating plot: {plot_file}") - fig, ax = plt.subplots(figsize=(10, 6)) - ax.plot(time_coord, t2m, marker="o", linewidth=2, markersize=6) - ax.set_xlabel("Lead Time (h)", fontsize=12) - ax.set_ylabel("2-meter Temperature (K)", fontsize=12) - ax.set_title( - f"Temperature Forecast at x={x}, y={y}", fontsize=14, fontweight="bold" - ) - ax.grid(True, alpha=0.3) - - # Save the plot - fig.tight_layout() - fig.savefig(plot_file, dpi=150, bbox_inches="tight") - plt.close(fig) - - print("\n🎉 Forecast complete!") - print(f" Plot saved to: {plot_file}") - - -if __name__ == "__main__": - main() diff --git a/serve/client/pyproject.toml b/serve/client/pyproject.toml deleted file mode 100644 index 535eed801..000000000 --- a/serve/client/pyproject.toml +++ /dev/null @@ -1,88 +0,0 @@ -[build-system] -requires = ["hatchling", "uv-dynamic-versioning"] -build-backend = "hatchling.build" - -[project] -name = "earth2studio.serve.client" -dynamic = ["version"] -description = "Python client SDK for Earth2Studio REST API" -authors = [ - {name = "NVIDIA Scicomp Team"} -] -readme = "README.md" -license = {text = "Apache-2.0"} -requires-python = ">=3.11" -classifiers = [ - "Development Status :: 4 - Beta", - "Intended Audience :: Science/Research", - "Intended Audience :: Developers", - "License :: OSI Approved :: Apache Software License", - "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.11", - "Programming Language :: Python :: 3.12", - "Topic :: Scientific/Engineering :: Atmospheric Science", - "Topic :: Scientific/Engineering :: Artificial Intelligence", - "Topic :: Software Development :: Libraries :: Python Modules", -] -keywords = [ - "earth2studio", - "weather", - "forecasting", - "climate", - "machine learning", - "api client", - "ensemble forecasting", - "diagnostic analysis" -] -dependencies = [ - "aiohttp>=3.8.0", - "earth2studio>=0.9.0", - "fsspec>=2021.6.0", - "numpy>=1.21.0", - "requests>=2.25.0", - "urllib3>=1.26.0", - "xarray>=0.19.0", -] - -[project.optional-dependencies] -e2studio = [ - "torch>=2.10.0", -] -examples = [ - "matplotlib>=3.3.0", - "nvidia-physicsnemo>=1.0.1,<2.0", - "omegaconf>=2.3.0", - "pytz", -] - -[tool.hatch.version] -source = "uv-dynamic-versioning" - -[tool.hatch.build.targets.wheel] -packages = ["earth2studio/serve/client"] - -[tool.hatch.build.targets.wheel.sources] -"earth2studio/serve/client" = "earth2studio/serve/client" - -[tool.uv-dynamic-versioning] -vcs = "git" -style = "pep440" -bump = true - -[project.urls] -Homepage = "https://github.com/NVIDIA/earth2studio" -Documentation = "https://nvidia.github.io/earth2studio/" -Repository = "https://github.com/NVIDIA/earth2studio" -"Bug Reports" = "https://github.com/NVIDIA/earth2studio/issues" - -[tool.uv] -dev-dependencies = [ - "pytest>=6.0", - "pytest-cov>=2.0", - "black>=21.0", - "isort>=5.0", - "flake8>=3.8", - "mypy>=0.910", - "pre-commit>=2.15.0", - "ruff>=0.7.2", -] diff --git a/serve/client/requirements.txt b/serve/client/requirements.txt deleted file mode 100644 index 3f5a5881d..000000000 --- a/serve/client/requirements.txt +++ /dev/null @@ -1,14 +0,0 @@ -# Core dependencies for Earth2Studio Python Client SDK -requests>=2.25.0 -urllib3>=1.26.0 -aiohttp>=3.8.0 # For longer timeouts when reading remote zarr (fsspec HTTP) - -# Optional dependencies for enhanced functionality -# Uncomment as needed -# pandas>=1.3.0 # For data manipulation -# numpy>=1.21.0 # For numerical operations -# xarray>=0.19.0 # For working with multidimensional arrays -# matplotlib>=3.3.0 # For plotting and visualization -# omegaconf>=2.3.0 # For StormCast and other models that use OmegaConf -# nvidia-physicsnemo>=1.0.1,<2.0 # For StormCast and other physicsnemo-based models -# pytz # Required by nvidia-physicsnemo diff --git a/serve/server/Makefile b/serve/inferenceserver/Makefile similarity index 96% rename from serve/server/Makefile rename to serve/inferenceserver/Makefile index 7b44e8857..73d96e3dc 100644 --- a/serve/server/Makefile +++ b/serve/inferenceserver/Makefile @@ -61,4 +61,4 @@ install: # Run tests # integration_test: # @echo "Running API tests..." -# @python server/test/integration/test_api.py +# @python inferenceserver/test/integration/test_api.py diff --git a/serve/server/README.md b/serve/inferenceserver/README.md similarity index 99% rename from serve/server/README.md rename to serve/inferenceserver/README.md index c58bb3af5..f55f55bd9 100644 --- a/serve/server/README.md +++ b/serve/inferenceserver/README.md @@ -40,7 +40,7 @@ For current API usage, please refer to the workflow documentation linked above. 1. **Clone and navigate to the API directory:** ```bash - cd serve/server + cd service/inferenceserver ``` 2. **Make scripts executable and start services:** @@ -522,7 +522,7 @@ InferenceRequest: ### Server Configuration (config.yaml) The API server can be configured via the `config.yaml` file located at -`serve/server/conf/config.yaml`: +`api_server/conf/config.yaml`: #### Results Management diff --git a/serve/server/README_earth2workflows.md b/serve/inferenceserver/README_earth2workflows.md similarity index 98% rename from serve/server/README_earth2workflows.md rename to serve/inferenceserver/README_earth2workflows.md index 45ee1a059..9eb10f16a 100644 --- a/serve/server/README_earth2workflows.md +++ b/serve/inferenceserver/README_earth2workflows.md @@ -17,7 +17,7 @@ This is a simplified example demonstrating the key concepts. For complete workin `example_workflows` directory. ```python -from earth2studio.serve.server import workflow_registry, Earth2Workflow +from api_server.workflow import workflow_registry, Earth2Workflow from earth2studio.io import IOBackend from datetime import datetime from earth2studio.data import GFS diff --git a/serve/server/README_object_storage.md b/serve/inferenceserver/README_object_storage.md similarity index 100% rename from serve/server/README_object_storage.md rename to serve/inferenceserver/README_object_storage.md diff --git a/serve/server/README_workflows.md b/serve/inferenceserver/README_workflows.md similarity index 98% rename from serve/server/README_workflows.md rename to serve/inferenceserver/README_workflows.md index e5dbe64ae..008cb8863 100644 --- a/serve/server/README_workflows.md +++ b/serve/inferenceserver/README_workflows.md @@ -75,7 +75,7 @@ updates. Create a **Pydantic model** that defines your workflow's input parameters: ```python -from earth2studio.serve.server.workflow import WorkflowParameters +from api_server.workflow import WorkflowParameters from pydantic import Field from typing import List @@ -101,7 +101,7 @@ Implement the **`Workflow`** base class and assign the parameter class to its `P attribute: ```python -from earth2studio.serve.server.workflow import Workflow, WorkflowProgress, workflow_registry +from api_server.workflow import Workflow, WorkflowProgress, workflow_registry from typing import Any, Dict, Union import json @@ -314,7 +314,7 @@ class DeterministicWorkflowParameters(WorkflowParameters): ### Workflow Implementation ```python -from earth2studio.serve.server.workflow import WorkflowProgress +from api_server.workflow import WorkflowProgress @workflow_registry.register() class DeterministicWorkflow(Workflow): @@ -763,7 +763,7 @@ The `WorkflowProgress` class provides four standard fields: ### Basic Usage ```python -from earth2studio.serve.server.workflow import WorkflowProgress +from api_server.workflow import WorkflowProgress # Simple progress update progress = WorkflowProgress( @@ -790,7 +790,7 @@ except Exception as e: You can extend `WorkflowProgress` with workflow-specific fields: ```python -from earth2studio.serve.server.workflow import WorkflowProgress +from api_server.workflow import WorkflowProgress from pydantic import Field from typing import Optional diff --git a/serve/client/Makefile b/serve/inferenceserver/api_server/__init__.py similarity index 65% rename from serve/client/Makefile rename to serve/inferenceserver/api_server/__init__.py index 99b518462..f07be226e 100644 --- a/serve/client/Makefile +++ b/serve/inferenceserver/api_server/__init__.py @@ -14,16 +14,14 @@ # See the License for the specific language governing permissions and # limitations under the License. -.PHONY: deps integration_test run_deterministic run_stormcast +""" +Earth2Studio API Server Package -deps: - uv add -r requirements.txt +This package contains the main API server components including: +- main: FastAPI application and REST endpoints +- workflow: Workflow framework and registry +- worker: RQ worker functions for processing jobs +- cpu_worker: CPU-intensive worker functions +""" -# integration_test: -# TODO: Add integration tests here. - -run_deterministic: - python examples/basic_forecast.py - -run_stormcast: - python examples/downscaled_forecast.py +__all__ = ["main", "workflow", "worker", "cpu_worker", "config", "object_storage"] diff --git a/earth2studio/serve/server/cleanup_daemon.py b/serve/inferenceserver/api_server/cleanup_daemon.py similarity index 82% rename from earth2studio/serve/server/cleanup_daemon.py rename to serve/inferenceserver/api_server/cleanup_daemon.py index 4a0b29498..689f88d2f 100644 --- a/earth2studio/serve/server/cleanup_daemon.py +++ b/serve/inferenceserver/api_server/cleanup_daemon.py @@ -14,6 +14,13 @@ # See the License for the specific language governing permissions and # limitations under the License. +""" +Cleanup Daemon for API Server + +This daemon runs as a separate process and periodically cleans up expired +inference results based on the configured TTL (time-to-live). +""" + import json import logging import shutil @@ -27,21 +34,36 @@ import redis # type: ignore[import-untyped] -from earth2studio.serve.server.config import get_config, get_config_manager -from earth2studio.serve.server.workflow import WorkflowStatus +from api_server.config import get_config, get_config_manager +from api_server.workflow import WorkflowStatus -# Configure logging (config is obtained in main()) +# Get configuration +config = get_config() config_manager = get_config_manager() + +# Configure logging config_manager.setup_logging() logger = logging.getLogger(__name__) +# Path configuration from config +DEFAULT_OUTPUT_DIR = Path(config.paths.default_output_dir) +RESULTS_ZIP_DIR = Path(config.paths.results_zip_dir) + +# Global flag for graceful shutdown +shutdown_flag = False + + +def signal_handler(signum: int, frame: Any) -> None: + """Handle shutdown signals gracefully""" + global shutdown_flag + logger.info(f"Received signal {signum}, initiating graceful shutdown...") + shutdown_flag = True + def _delete_result_files( redis_client: redis.Redis, result_id: str, search_id: str, - default_output_dir: Path, - results_zip_dir: Path, workflow_name: str | None = None, ) -> None: """ @@ -51,21 +73,19 @@ def _delete_result_files( redis_client: Redis client result_id: ID to use for zip file lookup (request_id or combined_id) search_id: ID to search for in directory names - default_output_dir: Base directory for raw result outputs - results_zip_dir: Directory for result zip files and metadata workflow_name: Optional workflow name for workflow-specific subdirectory checking """ # Delete zip file zip_key = f"inference_request_zips:{result_id}:zip_file" zip_filename = redis_client.get(zip_key) if zip_filename: - zip_path = results_zip_dir / zip_filename + zip_path = RESULTS_ZIP_DIR / zip_filename if zip_path.exists(): zip_path.unlink() logger.info(f"Deleted zip file: {zip_path}") # Delete metadata file (metadata_{request_id}.json) - for item in results_zip_dir.iterdir(): + for item in RESULTS_ZIP_DIR.iterdir(): if ( item.is_file() and item.name.startswith("metadata") @@ -75,20 +95,20 @@ def _delete_result_files( logger.info(f"Deleted metadata file: {item}") # Delete raw results directory (search for directories containing search_id) - for item in default_output_dir.iterdir(): + for item in DEFAULT_OUTPUT_DIR.iterdir(): if item.is_dir() and search_id in item.name: shutil.rmtree(item) logger.info(f"Deleted raw results directory: {item}") # Also check subdirectories recursively for results - for item in results_zip_dir.iterdir(): + for item in RESULTS_ZIP_DIR.iterdir(): if item.is_dir() and search_id in item.name: shutil.rmtree(item) logger.info(f"Deleted results from zip dir: {item}") # Check in workflow-specific subdirectories if workflow_name is provided if workflow_name: - workflow_dir = default_output_dir / workflow_name + workflow_dir = DEFAULT_OUTPUT_DIR / workflow_name if workflow_dir.exists(): for item in workflow_dir.iterdir(): if item.is_dir() and search_id in item.name: @@ -101,7 +121,6 @@ def _process_expired_key( key: str, current_time: datetime, results_ttl_hours: float, - retention_ttl: int, expected_status: str, get_end_time_field: str, delete_files_func: Callable[[redis.Redis, str], None], @@ -115,7 +134,6 @@ def _process_expired_key( key: Redis key to process current_time: Current timestamp for age calculation results_ttl_hours: TTL threshold in hours - retention_ttl: Redis TTL in seconds for the key after marking expired expected_status: Expected status value for completed items get_end_time_field: Primary field name for end time delete_files_func: Function to call for deleting files @@ -162,7 +180,7 @@ def _process_expired_key( data["status"] = WorkflowStatus.EXPIRED redis_client.setex( key, - retention_ttl, + config.redis.retention_ttl, json.dumps(data), ) @@ -171,13 +189,7 @@ def _process_expired_key( return False -def cleanup_expired_results( - redis_client: redis.Redis, - results_ttl_hours: float, - retention_ttl: int, - default_output_dir: Path, - results_zip_dir: Path, -) -> None: +def cleanup_expired_results(redis_client: redis.Redis) -> None: """ Check Redis for expired results and clean them up. @@ -186,6 +198,8 @@ def cleanup_expired_results( 2. Deletes both raw result files and zip files 3. Updates the status to "expired" """ + results_ttl_hours = config.server.results_ttl_hours + logger.info("Running cleanup watchdog check...") current_time = datetime.now(timezone.utc) @@ -217,8 +231,6 @@ def delete_func( rc, result_id=_combined_id, search_id=_execution_id, - default_output_dir=default_output_dir, - results_zip_dir=results_zip_dir, workflow_name=_workflow_name, ) @@ -227,7 +239,6 @@ def delete_func( key=key, current_time=current_time, results_ttl_hours=results_ttl_hours, - retention_ttl=retention_ttl, expected_status=WorkflowStatus.COMPLETED, get_end_time_field="end_time", delete_files_func=delete_func, @@ -246,16 +257,7 @@ def delete_func( def main() -> None: """Main daemon loop""" - config = get_config() - default_output_dir = Path(config.paths.default_output_dir) - results_zip_dir = Path(config.paths.results_zip_dir) - - state: dict[str, bool] = {"shutdown": False} - - def signal_handler(signum: int, frame: Any) -> None: - """Handle shutdown signals gracefully.""" - logger.info(f"Received signal {signum}, initiating graceful shutdown...") - state["shutdown"] = True + global shutdown_flag # Set up signal handlers signal.signal(signal.SIGINT, signal_handler) @@ -285,21 +287,15 @@ def signal_handler(signum: int, frame: Any) -> None: # Main daemon loop try: - while not state["shutdown"]: + while not shutdown_flag: try: - cleanup_expired_results( - redis_client, - results_ttl_hours=config.server.results_ttl_hours, - retention_ttl=config.redis.retention_ttl, - default_output_dir=default_output_dir, - results_zip_dir=results_zip_dir, - ) + cleanup_expired_results(redis_client) except Exception as e: logger.exception(f"Error in cleanup cycle: {e}") # Sleep for the configured interval, checking shutdown flag periodically sleep_remaining = config.server.cleanup_watchdog_sec - while sleep_remaining > 0 and not state["shutdown"]: + while sleep_remaining > 0 and not shutdown_flag: sleep_time = min(5, sleep_remaining) # Check every 5 seconds time.sleep(sleep_time) sleep_remaining -= sleep_time diff --git a/serve/server/conf/config.yaml b/serve/inferenceserver/api_server/conf/config.yaml similarity index 100% rename from serve/server/conf/config.yaml rename to serve/inferenceserver/api_server/conf/config.yaml diff --git a/serve/server/conf/profiles.json b/serve/inferenceserver/api_server/conf/profiles.json similarity index 100% rename from serve/server/conf/profiles.json rename to serve/inferenceserver/api_server/conf/profiles.json diff --git a/serve/server/conf/workflows.yaml b/serve/inferenceserver/api_server/conf/workflows.yaml similarity index 100% rename from serve/server/conf/workflows.yaml rename to serve/inferenceserver/api_server/conf/workflows.yaml diff --git a/earth2studio/serve/server/config.py b/serve/inferenceserver/api_server/config.py similarity index 95% rename from earth2studio/serve/server/config.py rename to serve/inferenceserver/api_server/config.py index 69bc6a353..fc1f86fee 100644 --- a/earth2studio/serve/server/config.py +++ b/serve/inferenceserver/api_server/config.py @@ -14,6 +14,14 @@ # See the License for the specific language governing permissions and # limitations under the License. +""" +Configuration Management for Earth2Studio API Server + +This module provides centralized configuration management using Hydra. +All configuration values are defined here with sensible defaults and can be +overridden via YAML files or command-line arguments. +""" + import logging import os from dataclasses import dataclass, field @@ -198,13 +206,8 @@ def __init__(self) -> None: def _initialize_config(self) -> None: """Initialize configuration from Hydra""" try: - # Prefer CONFIG_DIR env var (required when package is installed without repo layout) - config_dir_env = os.environ.get("CONFIG_DIR") - if config_dir_env: - config_dir = Path(config_dir_env) - else: - _repo_root = Path(__file__).resolve().parent.parent.parent.parent - config_dir = _repo_root / "serve" / "server" / "conf" + # Get config directory + config_dir = Path(__file__).parent / "conf" # Clear any existing Hydra instance GlobalHydra.instance().clear() @@ -514,6 +517,10 @@ def workflow_config(self) -> dict[str, Any]: return self._workflow_config +# Global configuration instance +_config_manager: ConfigManager | None = None + + def get_config() -> AppConfig: """ Get the global configuration instance. @@ -522,7 +529,7 @@ def get_config() -> AppConfig: AppConfig: The application configuration Example: - >>> from earth2studio.serve.server.config import get_config + >>> from api_server.config import get_config >>> config = get_config() >>> print(config.redis.host) 'localhost' @@ -532,23 +539,27 @@ def get_config() -> AppConfig: def get_config_manager() -> ConfigManager: """ - Get the configuration manager instance (singleton). + Get the global configuration manager instance. Returns: ConfigManager: The configuration manager Example: - >>> from earth2studio.serve.server.config import get_config_manager + >>> from api_server.config import get_config_manager >>> manager = get_config_manager() >>> manager.setup_logging() """ - return ConfigManager() + global _config_manager + if _config_manager is None: + _config_manager = ConfigManager() + return _config_manager # Convenience function to reset config (mainly for testing) def reset_config() -> None: - """Reset the configuration manager singleton (mainly for testing).""" - ConfigManager._instance = None + """Reset the global configuration instance (mainly for testing)""" + global _config_manager + _config_manager = None GlobalHydra.instance().clear() @@ -560,7 +571,7 @@ def get_workflow_config(name: str) -> dict[str, Any]: dict[str, Any]: The workflow configuration Example: - >>> from earth2studio.serve.server.config import get_workflow_config + >>> from api_server.config import get_workflow_config >>> config = get_workflow_config("deterministic_earth2_workflow") >>> print(config["model_type"]) 'fcn' diff --git a/earth2studio/serve/server/cpu_worker.py b/serve/inferenceserver/api_server/cpu_worker.py similarity index 98% rename from earth2studio/serve/server/cpu_worker.py rename to serve/inferenceserver/api_server/cpu_worker.py index 78248ad6f..99ac82099 100644 --- a/earth2studio/serve/server/cpu_worker.py +++ b/serve/inferenceserver/api_server/cpu_worker.py @@ -29,7 +29,6 @@ "process_finalize_metadata", ] - import json import logging import zipfile @@ -41,8 +40,8 @@ import redis # type: ignore[import-untyped] # Import configuration -from earth2studio.serve.server.config import get_config, get_config_manager -from earth2studio.serve.server.utils import ( +from api_server.config import get_config, get_config_manager +from api_server.utils import ( get_inference_request_metadata_key, get_inference_request_output_path_key, get_inference_request_zip_key, @@ -50,7 +49,7 @@ get_signed_url_key, queue_next_stage, ) -from earth2studio.serve.server.workflow import ( +from api_server.workflow import ( WorkflowResult, WorkflowStatus, workflow_registry, @@ -77,7 +76,7 @@ # Register custom workflows in the CPU worker process try: - from earth2studio.serve.server.workflow import register_all_workflows + from api_server.workflow import register_all_workflows register_all_workflows(redis_client) logger.info("Custom workflows registered successfully in CPU worker process") @@ -328,14 +327,14 @@ def create_results_zip( file_manifest = build_file_manifest(output_path) if not output_path.exists(): - log.warning(f"Output path {output_path} does not exist") + logger.warning(f"Output path {output_path} does not exist") # Create zip file only if requested if create_zip: if zip_filename is None: zip_filename = f"{request_id}" zip_path = results_zip_dir / zip_filename - log.info(f"Creating results zip file: {zip_path}") + logger.info(f"Creating results zip file: {zip_path}") with zipfile.ZipFile( zip_path, "w", zipfile.ZIP_DEFLATED, compresslevel=6 @@ -369,9 +368,9 @@ def create_results_zip( FileManifestEntry(path=zip_filename, size=zip_size) ) - log.info(f"Created zip file {zip_filename} ({zip_size} bytes)") + logger.info(f"Created zip file {zip_filename} ({zip_size} bytes)") else: - log.info( + logger.info( f"Skipping zip creation for {request_id}, manifest has {len(file_manifest)} files" ) zip_filename = None # No zip file created @@ -414,7 +413,7 @@ def create_results_zip( config.redis.retention_ttl, str(results_zip_dir), ) - log.info(f"Stored pending metadata in Redis for {request_id}") + logger.info(f"Stored pending metadata in Redis for {request_id}") # Store zip filename association in Redis (only if zip was created) if zip_filename: @@ -560,7 +559,7 @@ def process_object_storage_upload( config.object_storage.bucket or config.object_storage.storage_type == "azure" ): - from earth2studio.serve.server.object_storage import ( + from api_server.object_storage import ( MSCObjectStorage, ObjectStorageError, ) @@ -574,7 +573,7 @@ def process_object_storage_upload( ) # Create S3 storage instance - storage_kwargs: dict[str, Any] = { + storage_kwargs = { "bucket": config.object_storage.bucket or config.object_storage.azure_container_name or "", @@ -1025,6 +1024,7 @@ def process_finalize_metadata( Returns: Dict containing result info, None on critical failure """ + from api_server.workflow import WorkflowStatus, workflow_registry request_id = f"{workflow_name}:{execution_id}" logger.info(f"Processing finalize metadata for {request_id}") @@ -1039,6 +1039,7 @@ def process_finalize_metadata( storage_info_json = redis_client.get(storage_info_key) if not pending_metadata_json or not results_zip_dir_str: + logger.error(f"Pending metadata not found in Redis for {request_id}") return fail_workflow( workflow_name, execution_id, diff --git a/serve/server/example_workflows/__init__.py b/serve/inferenceserver/api_server/example_workflows/__init__.py similarity index 100% rename from serve/server/example_workflows/__init__.py rename to serve/inferenceserver/api_server/example_workflows/__init__.py diff --git a/serve/server/example_workflows/deterministic_earth2_workflow.py b/serve/inferenceserver/api_server/example_workflows/deterministic_earth2_workflow.py similarity index 96% rename from serve/server/example_workflows/deterministic_earth2_workflow.py rename to serve/inferenceserver/api_server/example_workflows/deterministic_earth2_workflow.py index d995fbc76..088bebcf4 100644 --- a/serve/server/example_workflows/deterministic_earth2_workflow.py +++ b/serve/inferenceserver/api_server/example_workflows/deterministic_earth2_workflow.py @@ -25,11 +25,11 @@ from datetime import datetime from typing import Literal +from api_server.workflow import Earth2Workflow, workflow_registry from earth2studio import run from earth2studio.data import GFS from earth2studio.io import IOBackend from earth2studio.models.px import DLWP, FCN -from earth2studio.serve.server import Earth2Workflow, workflow_registry @workflow_registry.register diff --git a/serve/server/example_workflows/deterministic_fcn.py b/serve/inferenceserver/api_server/example_workflows/deterministic_fcn.py similarity index 99% rename from serve/server/example_workflows/deterministic_fcn.py rename to serve/inferenceserver/api_server/example_workflows/deterministic_fcn.py index cdc63c250..6afc30bf1 100644 --- a/serve/server/example_workflows/deterministic_fcn.py +++ b/serve/inferenceserver/api_server/example_workflows/deterministic_fcn.py @@ -31,7 +31,7 @@ import zarr from pydantic import Field -from earth2studio.serve.server.workflow import ( +from api_server.workflow import ( Workflow, WorkflowParameters, WorkflowProgress, diff --git a/serve/server/example_workflows/deterministic_workflow.py b/serve/inferenceserver/api_server/example_workflows/deterministic_workflow.py similarity index 99% rename from serve/server/example_workflows/deterministic_workflow.py rename to serve/inferenceserver/api_server/example_workflows/deterministic_workflow.py index ffa52e5e0..fa16ff285 100644 --- a/serve/server/example_workflows/deterministic_workflow.py +++ b/serve/inferenceserver/api_server/example_workflows/deterministic_workflow.py @@ -29,7 +29,7 @@ import zarr from pydantic import Field -from earth2studio.serve.server.workflow import ( +from api_server.workflow import ( Workflow, WorkflowParameters, WorkflowProgress, diff --git a/serve/server/example_workflows/diagnostic_workflow.py b/serve/inferenceserver/api_server/example_workflows/diagnostic_workflow.py similarity index 99% rename from serve/server/example_workflows/diagnostic_workflow.py rename to serve/inferenceserver/api_server/example_workflows/diagnostic_workflow.py index 23ca1d0f0..b6b05c841 100644 --- a/serve/server/example_workflows/diagnostic_workflow.py +++ b/serve/inferenceserver/api_server/example_workflows/diagnostic_workflow.py @@ -28,7 +28,7 @@ import zarr from pydantic import Field -from earth2studio.serve.server.workflow import ( +from api_server.workflow import ( Workflow, WorkflowParameters, WorkflowProgress, diff --git a/serve/server/example_workflows/example_user_workflow.py b/serve/inferenceserver/api_server/example_workflows/example_user_workflow.py similarity index 99% rename from serve/server/example_workflows/example_user_workflow.py rename to serve/inferenceserver/api_server/example_workflows/example_user_workflow.py index 3245d5726..69e390fdb 100644 --- a/serve/server/example_workflows/example_user_workflow.py +++ b/serve/inferenceserver/api_server/example_workflows/example_user_workflow.py @@ -38,7 +38,7 @@ from pydantic import Field -from earth2studio.serve.server.workflow import ( +from api_server.workflow import ( Workflow, WorkflowParameters, WorkflowProgress, diff --git a/serve/server/example_workflows/foundry_fcn3.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py similarity index 100% rename from serve/server/example_workflows/foundry_fcn3.py rename to serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py index 62e1334d8..192f0e190 100644 --- a/serve/server/example_workflows/foundry_fcn3.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3.py @@ -5,8 +5,8 @@ import numpy as np import torch import zarr -from api_server.workflow import Earth2Workflow, WorkflowProgress, workflow_registry +from api_server.workflow import Earth2Workflow, WorkflowProgress, workflow_registry from earth2studio.data import PlanetaryComputerECMWFOpenDataIFS, fetch_data from earth2studio.io import IOBackend, NetCDF4Backend, ZarrBackend from earth2studio.models.px import FCN3 diff --git a/serve/server/example_workflows/foundry_fcn3_stormscope_goes.py b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py similarity index 97% rename from serve/server/example_workflows/foundry_fcn3_stormscope_goes.py rename to serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py index 9bf5d304f..642b0ea89 100644 --- a/serve/server/example_workflows/foundry_fcn3_stormscope_goes.py +++ b/serve/inferenceserver/api_server/example_workflows/foundry_fcn3_stormscope_goes.py @@ -7,8 +7,8 @@ import torch import xarray as xr import zarr -from api_server.workflow import Earth2Workflow, WorkflowProgress, workflow_registry +from api_server.workflow import Earth2Workflow, WorkflowProgress, workflow_registry from earth2studio.data import ( GOES, InferenceOutputSource, @@ -404,16 +404,14 @@ def __call__( y_ori, coords_y_ori = self.get_stormscope_input(start_time_stormscope) coords_out = self.stormscope.output_coords(self.stormscope.input_coords()) - output_coords = OrderedDict( - { - "ensemble": np.arange(len(seeds_stormscope)), - # Planetary Computer does not like separate 'lead_time' - "time": to_time_array([start_time_stormscope]) + lead_times, - "variable": variables, - "y": coords_out["y"], - "x": coords_out["x"], - } - ) + output_coords = { + "ensemble": np.arange(len(seeds_stormscope)), + # Planetary Computer does not like separate 'lead_time' + "time": to_time_array([start_time_stormscope]) + lead_times, + "variable": variables, + "y": coords_out["y"], + "x": coords_out["x"], + } self.setup_io(io, output_coords, seeds_fcn3, seeds_stormscope) total_samples = len(seeds_stormscope) diff --git a/serve/server/example_workflows/stormcast_fcn3_workflow.py b/serve/inferenceserver/api_server/example_workflows/stormcast_fcn3_workflow.py similarity index 98% rename from serve/server/example_workflows/stormcast_fcn3_workflow.py rename to serve/inferenceserver/api_server/example_workflows/stormcast_fcn3_workflow.py index c369906e6..06ede58d1 100644 --- a/serve/server/example_workflows/stormcast_fcn3_workflow.py +++ b/serve/inferenceserver/api_server/example_workflows/stormcast_fcn3_workflow.py @@ -23,12 +23,12 @@ import torch import xarray as xr +from api_server.workflow import Earth2Workflow, workflow_registry from earth2studio import run from earth2studio.data import GFS, HRRR, InferenceOutputSource from earth2studio.io import IOBackend, NetCDF4Backend, XarrayBackend from earth2studio.models.dx import DerivedSurfacePressure from earth2studio.models.px import FCN3, DiagnosticWrapper, InterpModAFNO, StormCast -from earth2studio.serve.server import Earth2Workflow, workflow_registry @workflow_registry.register diff --git a/earth2studio/serve/server/main.py b/serve/inferenceserver/api_server/main.py similarity index 83% rename from earth2studio/serve/server/main.py rename to serve/inferenceserver/api_server/main.py index 3673c9c96..96905a618 100644 --- a/earth2studio/serve/server/main.py +++ b/serve/inferenceserver/api_server/main.py @@ -15,16 +15,15 @@ # limitations under the License. """ -Earth2Studio REST API server. +Earth2Studio REST API Server -Provides FastAPI endpoints for workflow execution, status, and result retrieval, -with Redis and RQ for job queuing and Prometheus metrics. +This module provides a REST API interface for running Earth2Studio workflows +including deterministic, diagnostic, ensemble, and custom inference workflows. """ import asyncio import json import logging -import os import time import uuid from collections.abc import AsyncGenerator @@ -36,7 +35,6 @@ import aiofiles # type: ignore[import-untyped] import redis as redis_sync # type: ignore[import-untyped] # For RQ (synchronous) import redis.asyncio as redis # type: ignore[import-untyped] -import uvicorn from fastapi import FastAPI, HTTPException, Request from fastapi.middleware.cors import CORSMiddleware from fastapi.responses import Response, StreamingResponse @@ -45,8 +43,8 @@ from rq import Queue # Import configuration -from earth2studio.serve.server.config import get_config, get_config_manager -from earth2studio.serve.server.utils import ( +from api_server.config import get_config, get_config_manager +from api_server.utils import ( create_file_stream, get_inference_request_output_path_key, get_inference_request_zip_key, @@ -54,7 +52,7 @@ ) # Import workflow registry -from earth2studio.serve.server.workflow import ( +from api_server.workflow import ( WorkflowResult, WorkflowStatus, workflow_registry, @@ -82,16 +80,13 @@ def check_admission_control() -> None: """ Check if the inference request can be admitted based on queue sizes. - Checks all relevant queues (inference, result zip, object storage, - and finalize metadata) to ensure none are at capacity before allowing + This function checks all relevant queues (inference, result zip, object storage, + and finalize metadata) to ensure none of them are at capacity before allowing a new request to be enqueued. - Raises - ------ - HTTPException - 429 if any queue is full (service temporarily unavailable; retry later). - 503 if Redis is not initialized. - 500 if queue status cannot be determined. + Raises: + HTTPException: 429 status if any queue is full, indicating the service + is temporarily unavailable and the client should retry later. """ queue_names = [ config.queue.name, @@ -129,18 +124,14 @@ def get_queue_position(job_id: str) -> int | None: """ Get the position of a job in the queue. - Uses RQ's Queue.job_ids property, which correctly returns job IDs + Uses RQ's Queue.job_ids property which correctly returns the job IDs including custom job_id values set during enqueue. - Parameters - ---------- - job_id : str - The ID of the job to find. + Args: + job_id: The ID of the job to find - Returns - ------- - int or None - Position in queue (0-indexed), or None if not found (e.g. picked up by worker). + Returns: + Position in queue (0-indexed), or None if not found in queue """ if not inference_queue: logger.warning("Inference queue not available for position lookup") @@ -176,12 +167,7 @@ def get_queue_position(job_id: str) -> int | None: @asynccontextmanager async def lifespan(app: FastAPI) -> AsyncGenerator[None, None]: - """ - Lifespan context manager for FastAPI application startup and shutdown. - - On startup: connects to Redis (async and sync), initializes the RQ inference - queue, and registers custom workflows. On shutdown: closes Redis connections. - """ + """Lifespan event handler for application startup and shutdown""" # Startup global redis_client, redis_sync_client, inference_queue try: @@ -225,7 +211,7 @@ async def lifespan(app: FastAPI) -> AsyncGenerator[None, None]: # Register custom workflows try: - from earth2studio.serve.server.workflow import register_all_workflows + from api_server.workflow import register_all_workflows register_all_workflows(redis_sync_client) logger.info("Custom workflows registered successfully") @@ -279,30 +265,10 @@ async def lifespan(app: FastAPI) -> AsyncGenerator[None, None]: @app.get("/health") @app.get("/readiness") async def health_check() -> dict[str, str]: - """ - Health and readiness check endpoint. - - Runs the status script and returns overall health based on its exit code. - - Returns - ------- - dict - Keys ``status`` (e.g. "healthy"/"unhealthy") and ``timestamp`` (ISO format). - - Raises - ------ - HTTPException - 503 if status is unhealthy; 500 if the check fails. - """ + """Health check endpoint using status script""" try: # Run the status script and check exit code - # Prefer SCRIPT_DIR env var (required when package is installed without repo layout) - script_dir_env = os.environ.get("SCRIPT_DIR") - if script_dir_env: - script_path = Path(script_dir_env) / "status.sh" - else: - _repo_root = Path(__file__).resolve().parent.parent.parent.parent - script_path = _repo_root / "serve" / "server" / "scripts" / "status.sh" + script_path = Path(__file__).parent.parent / "scripts" / "status.sh" process = await asyncio.create_subprocess_exec( str(script_path), stdout=asyncio.subprocess.PIPE, @@ -336,32 +302,13 @@ async def health_check() -> dict[str, str]: # Azure ML uses this to see if the container is alive @app.get("/liveness") def liveness() -> dict[str, str]: - """ - Liveness probe for Azure ML. - - Returns - ------- - dict - ``status`` key set to "alive" to indicate the container is running. - """ + """Liveness probe for Azure ML; returns alive status to indicate container is running.""" return {"status": "alive"} @app.get("/metrics") async def get_metrics() -> Response: - """ - Expose Prometheus metrics. - - Returns - ------- - Response - Response with Prometheus text format and appropriate content type. - - Raises - ------ - HTTPException - 500 if metrics generation fails. - """ + """Get Prometheus metrics""" try: metrics_data = generate_latest() return Response(content=metrics_data, media_type=CONTENT_TYPE_LATEST) @@ -380,14 +327,7 @@ async def get_metrics() -> Response: @app.get("/v1/workflows") @app.get("/v1/infer/workflows") async def list_workflows() -> dict[str, dict[str, str]]: - """ - List all available workflows. - - Returns - ------- - dict - Single key ``workflows`` mapping workflow name to description. - """ + """List all available workflows (only exposed workflows)""" workflows = workflow_registry.list_workflows(exposed_only=True) return {"workflows": workflows} @@ -398,24 +338,15 @@ async def get_workflow_schema(workflow_name: str) -> dict[str, Any]: """ Get the OpenAPI JSON schema for a workflow's parameters. - For Workflow subclasses the schema comes from WorkflowParameters; for - Earth2Workflow subclasses it is generated from the __call__ signature via - AutoParameters. - - Parameters - ---------- - workflow_name : str - Name of the workflow. + For workflows derived from Workflow class, the schema is generated from + the WorkflowParameters class. For workflows derived from Earth2Workflow class, + the schema is auto-generated from the __call__ signature via AutoParameters. - Returns - ------- - dict - JSON schema for the workflow parameters (OpenAPI-compatible). + Args: + workflow_name: Name of the workflow - Raises - ------ - HTTPException - 404 if workflow not found; 500 if schema generation fails. + Returns: + JSON schema for the workflow parameters """ # Check if workflow exists and is exposed workflow_class = workflow_registry.get_workflow_class(workflow_name) @@ -455,14 +386,7 @@ async def get_workflow_schema(workflow_name: str) -> dict[str, Any]: class WorkflowExecutionRequest(BaseModel): - """ - Request body for workflow execution. - - Attributes - ---------- - parameters : dict - Workflow-specific parameters (validated by the workflow's parameter class). - """ + """Request model for workflow execution""" model_config = {"extra": "forbid"} @@ -472,24 +396,7 @@ class WorkflowExecutionRequest(BaseModel): class WorkflowExecutionResponse(BaseModel): - """ - Response after submitting a workflow execution. - - Attributes - ---------- - workflow_name : str - Name of the workflow. - execution_id : str - Unique execution identifier. - status : str - Current status (e.g. QUEUED). - position : int or None - Queue position (0-indexed); set when status is QUEUED. - message : str - Human-readable message. - timestamp : str - ISO format timestamp. - """ + """Response model for workflow execution""" workflow_name: str execution_id: str @@ -505,31 +412,8 @@ class WorkflowExecutionResponse(BaseModel): async def execute_workflow( workflow_name: str, request: WorkflowExecutionRequest ) -> WorkflowExecutionResponse: - """ - Enqueue a custom workflow for execution. - - Validates parameters, performs admission control, persists execution data - in Redis, and enqueues the job to the RQ inference queue. - - Parameters - ---------- - workflow_name : str - Name of the registered workflow. - request : WorkflowExecutionRequest - Request body containing workflow parameters. - - Returns - ------- - WorkflowExecutionResponse - Execution ID, status (QUEUED), queue position, and message. - - Raises - ------ - HTTPException - 404 if workflow not found; 422 if parameters invalid; 429 if queues full; - 503 if Redis/queue not initialized; 500 on enqueue failure. - """ - # Check if workflow exists and get the workflow class for validation + """Execute a custom workflow""" + # Check if workflow exists and is exposed custom_workflow_class = workflow_registry.get_workflow_class(workflow_name) if not custom_workflow_class: raise HTTPException( @@ -583,7 +467,7 @@ async def execute_workflow( status_code=503, detail="Inference queue not initialized" ) job = inference_queue.enqueue( - "earth2studio.serve.server.worker.run_custom_workflow", + "api_server.worker.run_custom_workflow", # New worker function workflow_name, execution_id, validated_params_dict, @@ -638,26 +522,7 @@ async def execute_workflow( "/v1/infer/{workflow_name}/{execution_id}/status", response_model=WorkflowResult ) async def get_workflow_status(workflow_name: str, execution_id: str) -> WorkflowResult: - """ - Get the status of a workflow execution. - - Parameters - ---------- - workflow_name : str - Name of the workflow. - execution_id : str - Unique execution identifier. - - Returns - ------- - WorkflowResult - Current status, progress, timestamps, and optional queue position. - - Raises - ------ - HTTPException - 404 if workflow or execution not found; 500 on server error. - """ + """Get status of a workflow execution""" # Create logger adapter with execution_id log = logging.LoggerAdapter(logger, {"execution_id": execution_id}) @@ -709,27 +574,7 @@ async def get_workflow_status(workflow_name: str, execution_id: str) -> Workflow async def get_workflow_results( workflow_name: str, execution_id: str ) -> dict[str, Any] | StreamingResponse: - """ - Get result metadata (e.g. metadata.json) for a completed workflow execution. - - Parameters - ---------- - workflow_name : str - Name of the workflow. - execution_id : str - Unique execution identifier. - - Returns - ------- - dict - JSON metadata (e.g. from metadata_{workflow_name}:{execution_id}.json). - - Raises - ------ - HTTPException - 202 if still queued/running/pending; 400 if expired or bad request; - 404 if workflow, execution, or metadata file not found, or if execution failed/cancelled. - """ + """Get metadata.json for a workflow execution""" # Create logger adapter with execution_id log = logging.LoggerAdapter(logger, {"execution_id": execution_id}) @@ -842,29 +687,13 @@ async def get_workflow_result_file( """ Stream a specific file from the workflow execution results. - If filepath equals the request ID (workflow_name:execution_id), streams the - results zip file. Otherwise serves a file from the output directory (path - normalized and checked to prevent directory traversal). - - Parameters - ---------- - workflow_name : str - Name of the workflow. - execution_id : str - Execution identifier. - filepath : str - Relative path within the output directory, or the request ID for the zip. - - Returns - ------- - StreamingResponse - File or zip contents with appropriate headers. - - Raises - ------ - HTTPException - 403 on path traversal attempt; 404 if workflow, execution, file, or zip - not found or results not completed; 503 if Redis not initialized; 500 on error. + Args: + workflow_name: Name of the workflow + execution_id: Execution ID + filepath: Relative path to the file within the output directory + + Returns: + Streaming response with the file contents """ # Check if workflow exists and is exposed custom_workflow_class = workflow_registry.get_workflow_class(workflow_name) @@ -1080,6 +909,8 @@ async def get_workflow_result_file( if __name__ == "__main__": + import uvicorn + uvicorn.run( app, host=config.server.host, # noqa: S104 diff --git a/earth2studio/serve/server/object_storage.py b/serve/inferenceserver/api_server/object_storage.py similarity index 90% rename from earth2studio/serve/server/object_storage.py rename to serve/inferenceserver/api_server/object_storage.py index 42f8e07a9..7961df4ff 100644 --- a/earth2studio/serve/server/object_storage.py +++ b/serve/inferenceserver/api_server/object_storage.py @@ -14,6 +14,18 @@ # See the License for the specific language governing permissions and # limitations under the License. +""" +Object Storage Module + +This module provides object storage functionality using NVIDIA Multi-Storage Client (MSC) +with Rust backend for high-performance parallel file transfers. + +Example: + >>> from api_server.object_storage import MSCObjectStorage + >>> storage = MSCObjectStorage(bucket="my-bucket", region="us-east-1") + >>> storage.upload_directory("/path/to/local/dir", "remote/prefix") +""" + import base64 import datetime import logging @@ -29,22 +41,7 @@ @dataclass class UploadResult: - """ - Result of an upload operation. - - Attributes - ---------- - success : bool - Whether the upload completed without errors. - files_uploaded : int - Number of files uploaded. - total_bytes : int - Total bytes uploaded. - destination : str - Destination path or URI. - errors : list of str - List of error messages, if any. - """ + """Result of an upload operation""" success: bool files_uploaded: int @@ -64,9 +61,9 @@ class ObjectStorage(ABC): """ Abstract base class for object storage operations. - Defines the interface that all object storage implementations must follow. - Subclasses implement the abstract methods for specific cloud providers - (AWS S3, GCS, Azure Blob Storage, etc.). + This class defines the interface that all object storage implementations must follow. + Subclasses should implement the abstract methods to provide functionality for + specific cloud providers (AWS S3, GCS, Azure Blob Storage, etc.). """ @abstractmethod @@ -80,31 +77,20 @@ def upload_directory( """ Upload a local directory to the object store at the specified path. - Parameters - ---------- - local_directory : str or Path - Path to the local directory to upload. - remote_prefix : str - Prefix/path in the bucket where files will be uploaded. - Files maintain their relative paths under this prefix. - recursive : bool, optional - If True, recursively upload all subdirectories. Default is True. - overwrite : bool, optional - If True, overwrite existing files in the destination. Default is True. - - Returns - ------- - UploadResult - Details about the upload operation. - - Raises - ------ - FileNotFoundError - If the local directory does not exist. - PermissionError - If there are permission issues with the bucket. - ObjectStorageError - For other storage-related errors. + Args: + local_directory: Path to the local directory to upload. + remote_prefix: The prefix/path in the bucket where files will be uploaded. + Files will maintain their relative paths under this prefix. + recursive: If True, recursively upload all subdirectories. + overwrite: If True, overwrite existing files in the destination. + + Returns: + UploadResult containing details about the upload operation. + + Raises: + FileNotFoundError: If the local directory does not exist. + PermissionError: If there are permission issues with the bucket. + ObjectStorageError: For other storage-related errors. """ pass @@ -118,18 +104,12 @@ def upload_file( """ Upload a single file to the object store. - Parameters - ---------- - local_file : str or Path - Path to the local file to upload. - remote_key : str - Full key/path in the bucket for the file. - overwrite : bool, optional - If True, overwrite if the file already exists. Default is True. - - Returns - ------- - bool + Args: + local_file: Path to the local file to upload. + remote_key: The full key/path in the bucket for the file. + overwrite: If True, overwrite if the file already exists. + + Returns: True if upload was successful, False otherwise. """ pass @@ -139,14 +119,10 @@ def file_exists(self, remote_key: str) -> bool: """ Check if a file exists in the object store. - Parameters - ---------- - remote_key : str - Full key/path in the bucket. + Args: + remote_key: The full key/path in the bucket. - Returns - ------- - bool + Returns: True if the file exists, False otherwise. """ pass @@ -156,14 +132,10 @@ def delete_file(self, remote_key: str) -> bool: """ Delete a file from the object store. - Parameters - ---------- - remote_key : str - Full key/path in the bucket. + Args: + remote_key: The full key/path in the bucket. - Returns - ------- - bool + Returns: True if deletion was successful, False otherwise. """ pass @@ -173,25 +145,15 @@ def generate_signed_url(self, remote_key: str, expires_in: int = 86400) -> str: """ Generate a signed URL for a file in the object store. - Parameters - ---------- - remote_key : str - Full key/path in the bucket. - expires_in : int, optional - Number of seconds the URL will be valid for. Default is 86400. - - Returns - ------- - str - Signed URL string. + Args: + remote_key: The full key/path in the bucket. + expires_in: The number of seconds the URL will be valid for. """ pass class ObjectStorageError(Exception): - """ - Base exception for object storage errors. - """ + """Base exception for object storage errors""" pass @@ -670,9 +632,7 @@ def file_exists(self, remote_key: str) -> bool: Args: remote_key: The storage key to check. - Returns - ------- - bool + Returns: True if the file exists, False otherwise. """ try: @@ -691,9 +651,7 @@ def delete_file(self, remote_key: str) -> bool: Args: remote_key: The storage key to delete. - Returns - ------- - bool + Returns: True if successful, False otherwise. """ try: @@ -708,19 +666,7 @@ def delete_file(self, remote_key: str) -> bool: return False def _rsa_signer(self, message: bytes) -> bytes: - """ - Sign a message using the CloudFront private key. - - Parameters - ---------- - message : bytes - Message to sign. - - Returns - ------- - bytes - RSA signature. - """ + """Sign a message using the CloudFront private key.""" from cryptography.hazmat.primitives import hashes from cryptography.hazmat.primitives.asymmetric import padding from cryptography.hazmat.primitives.serialization import load_pem_private_key @@ -741,19 +687,7 @@ def _rsa_signer(self, message: bytes) -> bytes: @staticmethod def _url_safe_b64(data: bytes) -> str: - """ - Convert bytes to URL-safe base64. - - Parameters - ---------- - data : bytes - Data to encode. - - Returns - ------- - str - URL-safe base64 string. - """ + """Convert bytes to URL-safe base64.""" return ( base64.b64encode(data) .decode("utf-8") @@ -892,3 +826,44 @@ def _generate_azure_sas_url(self, remote_key: str, expires_in: int) -> str: f"Generated Azure SAS URL for {remote_key}, expires in {expires_in}s" ) return signed_url + + +def get_object_storage( + provider: Literal["msc"] = "msc", + **kwargs: Any, +) -> ObjectStorage: + """ + Factory function to get an object storage instance. + + This function provides a convenient way to instantiate the MSCObjectStorage + implementation which uses NVIDIA Multi-Storage Client with Rust backend. + + Args: + provider: The storage provider to use. Currently only "msc" is supported. + **kwargs: Provider-specific configuration arguments. + + Returns: + An ObjectStorage instance. + + Raises: + ValueError: If an unsupported provider is specified. + + Example: + >>> storage = get_object_storage( + ... "msc", + ... bucket="my-bucket", + ... region="us-east-1", + ... use_rust_client=True + ... ) + """ + providers = { + "msc": MSCObjectStorage, + } + + if provider not in providers: + raise ValueError( + f"Unsupported storage provider: {provider}. " + f"Supported providers: {list(providers.keys())}" + ) + + return providers[provider](**kwargs) diff --git a/serve/server/planetary_computer/pc_client.py b/serve/inferenceserver/api_server/planetary_computer/pc_client.py similarity index 100% rename from serve/server/planetary_computer/pc_client.py rename to serve/inferenceserver/api_server/planetary_computer/pc_client.py diff --git a/serve/server/planetary_computer/template-collection-fcn3-stormscope-goes.json b/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3-stormscope-goes.json similarity index 100% rename from serve/server/planetary_computer/template-collection-fcn3-stormscope-goes.json rename to serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3-stormscope-goes.json diff --git a/serve/server/planetary_computer/template-collection-fcn3.json b/serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3.json similarity index 100% rename from serve/server/planetary_computer/template-collection-fcn3.json rename to serve/inferenceserver/api_server/planetary_computer/template-collection-fcn3.json diff --git a/serve/server/planetary_computer/template-feature-fcn3-stormscope-goes.json b/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3-stormscope-goes.json similarity index 100% rename from serve/server/planetary_computer/template-feature-fcn3-stormscope-goes.json rename to serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3-stormscope-goes.json diff --git a/serve/server/planetary_computer/template-feature-fcn3.json b/serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3.json similarity index 100% rename from serve/server/planetary_computer/template-feature-fcn3.json rename to serve/inferenceserver/api_server/planetary_computer/template-feature-fcn3.json diff --git a/earth2studio/serve/server/utils.py b/serve/inferenceserver/api_server/utils.py similarity index 94% rename from earth2studio/serve/server/utils.py rename to serve/inferenceserver/api_server/utils.py index 1cc044caa..2c6d725df 100644 --- a/earth2studio/serve/server/utils.py +++ b/serve/inferenceserver/api_server/utils.py @@ -34,7 +34,7 @@ from fastapi import HTTPException from rq import Queue -from earth2studio.serve.server.config import get_config +from api_server.config import get_config logger = logging.getLogger(__name__) @@ -201,9 +201,7 @@ async def create_file_stream( def queue_next_stage( redis_client: redis.Redis, - current_stage: Literal[ - "inference", "result_zip", "object_storage", "geocatalog_ingestion" - ], + current_stage: Stage, workflow_name: str, execution_id: str, output_path_str: str, @@ -234,7 +232,7 @@ def queue_next_stage( if current_stage == "inference": # Always go to result_zip stage (for manifest building), but control zip creation via config next_queue = "result_zip" - next_func = "earth2studio.serve.server.cpu_worker.process_result_zip" + next_func = "api_server.cpu_worker.process_result_zip" # Pass create_zip parameter based on config # Disable zip creation when object storage is enabled (files uploaded directly) create_zip = ( @@ -251,13 +249,11 @@ def queue_next_stage( elif current_stage == "result_zip": if config.object_storage.enabled: next_queue = "object_storage" - next_func = ( - "earth2studio.serve.server.cpu_worker.process_object_storage_upload" - ) + next_func = "api_server.cpu_worker.process_object_storage_upload" args = (workflow_name, execution_id, output_path_str) else: next_queue = "finalize_metadata" - next_func = "earth2studio.serve.server.cpu_worker.process_finalize_metadata" + next_func = "api_server.cpu_worker.process_finalize_metadata" args = (workflow_name, execution_id) elif current_stage == "object_storage": @@ -272,7 +268,7 @@ def queue_next_stage( elif current_stage == "geocatalog_ingestion": next_queue = "finalize_metadata" - next_func = "earth2studio.serve.server.cpu_worker.process_finalize_metadata" + next_func = "api_server.cpu_worker.process_finalize_metadata" args = (workflow_name, execution_id) else: diff --git a/earth2studio/serve/server/worker.py b/serve/inferenceserver/api_server/worker.py similarity index 79% rename from earth2studio/serve/server/worker.py rename to serve/inferenceserver/api_server/worker.py index 804c6d3e0..f8ff9c601 100644 --- a/earth2studio/serve/server/worker.py +++ b/serve/inferenceserver/api_server/worker.py @@ -14,6 +14,14 @@ # See the License for the specific language governing permissions and # limitations under the License. +""" +Earth2Studio RQ Worker + +This module contains the worker functions for processing inference requests +using Redis Queue (RQ). Workers run the actual inference computations. + +""" + import logging import time from datetime import datetime, timezone @@ -23,13 +31,13 @@ import redis # type: ignore[import-untyped] # Import configuration -from earth2studio.serve.server.config import get_config, get_config_manager +from api_server.config import get_config, get_config_manager # Import queue_next_stage utility -from earth2studio.serve.server.utils import queue_next_stage +from api_server.utils import queue_next_stage # Import workflow registry -from earth2studio.serve.server.workflow import WorkflowStatus, workflow_registry +from api_server.workflow import WorkflowStatus, workflow_registry # Get configuration config = get_config() @@ -59,7 +67,7 @@ # Register custom workflows in the worker process try: - from earth2studio.serve.server.workflow import register_all_workflows + from api_server.workflow import register_all_workflows register_all_workflows(redis_client) logger.info("Custom workflows registered successfully in worker process") @@ -78,25 +86,7 @@ def get_output_path( workflow_type: str, request_id: str, ) -> Path: - """ - Generate output path for workflow results. - - Parameters - ---------- - io_config : dict or None - I/O configuration (used for backend_type); if None, backend_type defaults to "zarr". - timestamp : str - Timestamp string used in the output directory name. - workflow_type : str - Type of workflow (e.g. workflow name). - request_id : str - Request identifier. - - Returns - ------- - Path - Path to the forecast output file (e.g. forecast.zarr). - """ + """Generate output path for workflow results""" # Create timestamp-based subdirectory timestamp_str = timestamp.replace(":", "").replace("Z", "").replace("+", "") output_dir = DEFAULT_OUTPUT_DIR / f"{workflow_type}_{timestamp_str}_{request_id}" @@ -109,33 +99,7 @@ def get_output_path( def run_custom_workflow( workflow_name: str, execution_id: str, parameters: dict[str, Any] ) -> Any: - """ - RQ worker function to run a custom workflow. - - Executes the workflow, updates execution status in Redis, and queues the - next pipeline stage (e.g. result_zip or object_storage) as configured. - - Parameters - ---------- - workflow_name : str - Name of the registered workflow to run. - execution_id : str - Unique execution identifier. - parameters : dict - Workflow input parameters (validated by the workflow's parameter type). - - Returns - ------- - Any - Result returned by the workflow's run() method. - - Raises - ------ - ValueError - If the workflow is not found or cannot be instantiated. - RuntimeError - If queuing the next pipeline stage fails. - """ + """RQ Worker function to run custom workflow""" # Create logger adapter with execution_id for automatic log prefixing log = logging.LoggerAdapter(logger, {"execution_id": execution_id}) @@ -148,13 +112,11 @@ def run_custom_workflow( # Create workflow instance for execution custom_workflow = workflow_registry.get(workflow_name, redis_client=redis_client) - if custom_workflow is None: - raise ValueError(f"Custom workflow '{workflow_name}' could not be instantiated") try: start_timestamp = time.time() start_time = datetime.now(timezone.utc).isoformat() - updates: dict[str, Any] = { + updates = { "status": WorkflowStatus.RUNNING, "start_time": start_time, } diff --git a/earth2studio/serve/server/__init__.py b/serve/inferenceserver/api_server/workflow/__init__.py similarity index 62% rename from earth2studio/serve/server/__init__.py rename to serve/inferenceserver/api_server/workflow/__init__.py index 475e291bf..91d3cf418 100644 --- a/earth2studio/serve/server/__init__.py +++ b/serve/inferenceserver/api_server/workflow/__init__.py @@ -14,9 +14,16 @@ # See the License for the specific language governing permissions and # limitations under the License. +""" +Workflow package for custom workflows. + +This package provides the base classes and functionality for creating custom workflows +that can be served as REST APIs. +""" + from typing import Any -from earth2studio.serve.server.workflow import ( +from .workflow import ( Workflow, WorkflowParameters, WorkflowProgress, @@ -30,9 +37,26 @@ ) +# Lazy import for Earth2Workflow to avoid requiring torch/earth2studio dependencies +# unless actually needed def __getattr__(name: str) -> Any: if name == "Earth2Workflow": - from earth2studio.serve.server import e2workflow + from .e2workflow import Earth2Workflow - return e2workflow.Earth2Workflow + return Earth2Workflow raise AttributeError(f"module {__name__!r} has no attribute {name!r}") + + +__all__ = [ + "Workflow", + "WorkflowParameters", + "WorkflowProgress", + "WorkflowResult", + "WorkflowStatus", + "WorkflowRegistry", + "workflow_registry", + "get_workflow_config", + "register_all_workflows", + "parse_workflow_directories_from_env", + "Earth2Workflow", +] diff --git a/earth2studio/serve/server/e2workflow.py b/serve/inferenceserver/api_server/workflow/e2workflow.py similarity index 97% rename from earth2studio/serve/server/e2workflow.py rename to serve/inferenceserver/api_server/workflow/e2workflow.py index e71719de5..3e52df372 100644 --- a/earth2studio/serve/server/e2workflow.py +++ b/serve/inferenceserver/api_server/workflow/e2workflow.py @@ -24,16 +24,12 @@ import zarr from pydantic import Field, create_model +from api_server.config import get_config from earth2studio.io import IOBackend, NetCDF4Backend, ZarrBackend -from earth2studio.serve.server.config import get_config -from earth2studio.serve.server.workflow import ( - Workflow, - WorkflowConfig, - WorkflowParameters, - WorkflowProgress, -) from earth2studio.utils.type import CoordSystem +from .workflow import Workflow, WorkflowConfig, WorkflowParameters, WorkflowProgress + def _convert_param(param: inspect.Parameter, typeinfo: type) -> tuple[type, Field]: """Convert parameter to Pydantic Field declaration with validation constraints""" @@ -232,7 +228,7 @@ class BackendProgress: def __init__( self, io: IOBackend, - workflow: "Earth2Workflow", + workflow: Workflow, execution_id: str, progress_dim: str = "lead_time", ) -> None: diff --git a/earth2studio/serve/server/workflow.py b/serve/inferenceserver/api_server/workflow/workflow.py similarity index 75% rename from earth2studio/serve/server/workflow.py rename to serve/inferenceserver/api_server/workflow/workflow.py index c262bdefd..8e786c34b 100644 --- a/earth2studio/serve/server/workflow.py +++ b/serve/inferenceserver/api_server/workflow/workflow.py @@ -14,6 +14,12 @@ # See the License for the specific language governing permissions and # limitations under the License. +""" +Workflow module + +This module provides the base classes and functionality for custom workflows. +""" + import importlib.util import json import logging @@ -25,10 +31,10 @@ from typing import Any, Union import redis # type: ignore[import-untyped] -from pydantic import BaseModel, ConfigDict, Field, ValidationInfo, field_validator +from pydantic import BaseModel, ConfigDict, Field, field_validator # Import configuration -from earth2studio.serve.server.config import ( +from api_server.config import ( get_config, get_config_manager, get_workflow_config, @@ -44,7 +50,7 @@ class WorkflowStatus: - """Workflow execution status constants.""" + """Workflow execution status constants""" QUEUED = "queued" RUNNING = "running" @@ -56,7 +62,7 @@ class WorkflowStatus: class WorkflowArgsBase(BaseModel): - """Base parameters for workflow execution.""" + """Base parameters for workflow execution""" # Add strict validation - reject unknown fields model_config = ConfigDict(extra="forbid") @@ -72,20 +78,14 @@ def validate( It ensures that all required fields are present, types are correct, and any custom validators defined in the parameter class are executed. - Parameters - ---------- - data : dict or WorkflowArgsBase - Input data as dict or WorkflowArgsBase instance. + Args: + data: Input data as dict or WorkflowArgsBase instance - Returns - ------- - WorkflowArgsBase - Validated WorkflowArgsBase instance. + Returns: + Validated WorkflowArgsBase instance - Raises - ------ - ValueError - If validation fails. + Raises: + ValueError: If validation fails """ if isinstance(data, cls): # Already the correct type, re-validate to ensure all constraints are met @@ -109,34 +109,24 @@ class WorkflowParameters(WorkflowArgsBase): @field_validator("forecast_times", "start_time", mode="before", check_fields=False) @classmethod - def validate_datetime_list( - cls: type["WorkflowParameters"], - v: list[str] | list[datetime] | str | datetime | None, - info: ValidationInfo, - ) -> list[str] | list[datetime] | str | datetime | None: + def validate_datetime_list(cls, v: Any, info: Any) -> Any: """ Validate that forecast_times and start_time are in valid ISO 8601 datetime format. This validator handles both string lists (forecast_times) and can validate datetime objects or ISO 8601 strings (start_time). + Requires full datetime format with 'T' separator (not just date) for strings. - Parameters - ---------- - v : list of str or datetime, or single value, or None - The value (can be list of strings/datetime objects, single value, or None). - info : ValidationInfo - Pydantic validation context (e.g. field name). + Args: + v: The value (can be list of strings/datetime objects, single value, or None) + info: Validation context info - Returns - ------- - list of str or list of datetime or str or datetime or None - The validated value (same shape as input). + Returns: + The validated value - Raises - ------ - ValueError - If any value is not in valid ISO 8601 datetime format. + Raises: + ValueError: If any value is not in valid ISO 8601 datetime format """ from datetime import datetime @@ -188,7 +178,7 @@ def validate_datetime_list( class WorkflowConfig(WorkflowArgsBase): """ - Specialize in case we want to differentiate parameters and config handling later. + Specialize in case we want to differentiate parameters and config handling later. """ pass @@ -201,46 +191,38 @@ class WorkflowProgress(BaseModel): This class provides standard progress tracking fields that can be extended by custom workflows to include additional tracking information. - Attributes - ---------- - progress : str or None - Human-readable progress message. - current_step : int or None - Current step number in the workflow. - total_steps : int or None - Total number of steps in the workflow. - error_message : str or None - Error message to report specific errors when workflow fails. - - Examples - -------- - Basic usage: - - >>> progress = WorkflowProgress( - ... progress="Processing data...", - ... current_step=3, - ... total_steps=10 - ... ) - - Error reporting: - - >>> progress = WorkflowProgress( - ... progress="Failed!", - ... error_message="Connection timeout: Could not reach data source" - ... ) - - Extended for custom workflow: - - >>> class MyCustomProgress(WorkflowProgress): - ... data_processed_gb: float = 0.0 - ... error_count: int = 0 - >>> progress = MyCustomProgress( - ... progress="Processing batch 5", - ... current_step=5, - ... total_steps=20, - ... data_processed_gb=150.5, - ... error_count=2 - ... ) + Attributes: + progress: Human-readable progress message + current_step: Current step number in the workflow + total_steps: Total number of steps in the workflow + error_message: Error message to report specific errors when workflow fails + + Example: + Basic usage: + progress = WorkflowProgress( + progress="Processing data...", + current_step=3, + total_steps=10 + ) + + Error reporting: + progress = WorkflowProgress( + progress="Failed!", + error_message="Connection timeout: Could not reach data source" + ) + + Extended for custom workflow: + class MyCustomProgress(WorkflowProgress): + data_processed_gb: float = 0.0 + error_count: int = 0 + + progress = MyCustomProgress( + progress="Processing batch 5", + current_step=5, + total_steps=20, + data_processed_gb=150.5, + error_count=2 + ) """ progress: str | None = None @@ -250,7 +232,7 @@ class WorkflowProgress(BaseModel): class WorkflowResult(BaseModel): - """Base result structure for workflow execution.""" + """Base result structure for workflow execution""" workflow_name: str execution_id: str @@ -294,16 +276,14 @@ def __init__(self) -> None: """ Initialize workflow. - Notes - ----- - name and description are set by the registry during workflow instantiation. + Note: name and description are set by the registry during workflow instantiation. """ self.redis_client: redis.Redis | None = None self.output_dir = Path(config.paths.default_output_dir) self.output_dir.mkdir(parents=True, exist_ok=True) def set_redis_client(self, redis_client: redis.Redis) -> None: - """Set Redis client for state management.""" + """Set Redis client for state management""" self.redis_client = redis_client @classmethod @@ -318,26 +298,19 @@ def validate_parameters( Pydantic field validation and model validation. Subclasses should implement this method to specify their parameter type. - Parameters - ---------- - parameters : dict or WorkflowParameters - Input parameters as dict or WorkflowParameters instance. + Args: + parameters: Input parameters as dict or WorkflowParameters instance - Returns - ------- - WorkflowParameters - Validated WorkflowParameters instance of the workflow-specific type. + Returns: + Validated WorkflowParameters instance of the workflow-specific type - Raises - ------ - ValueError - If validation fails. + Raises: + ValueError: If validation fails - Examples - -------- - >>> @classmethod - ... def validate_parameters(cls, parameters): - ... return MyWorkflowParameters.validate(parameters) + Example: + @classmethod + def validate_parameters(cls, parameters): + return MyWorkflowParameters.validate(parameters) """ raise NotImplementedError( "Subclasses must implement validate_parameters() method" @@ -353,17 +326,12 @@ def run( This method should implement the actual workflow logic. It will be called when a POST request is made to /v1/infer/{workflow_name}. - Parameters - ---------- - parameters : dict or WorkflowParameters - Input parameters for the workflow. - execution_id : str - Unique execution identifier. + Args: + parameters: Input parameters for the workflow (dict or WorkflowParameters) + execution_id: Unique execution identifier - Returns - ------- - dict - Dictionary containing workflow results. + Returns: + Dictionary containing workflow results """ raise NotImplementedError("Subclasses must implement run() method") @@ -376,49 +344,41 @@ def update_execution_data( This method can be called by workflow implementations to update specific fields in the execution data without replacing the entire record. - Parameters - ---------- - execution_id : str - Unique execution identifier. - updates : dict or WorkflowProgress - Dictionary of fields to update, or WorkflowProgress instance. - If a WorkflowProgress object is provided, it will update the - 'progress' field of WorkflowResult. Dict updates can include - any WorkflowResult fields including 'progress', 'metadata', etc. - - Raises - ------ - RuntimeError - If Redis client is not set. - - Examples - -------- - Using dict for general updates: - - >>> self.update_execution_data(execution_id, { - ... "metadata": {"custom_field": "value"} - ... }) - - Using WorkflowProgress for progress updates: - - >>> progress = WorkflowProgress( - ... progress="Processing data...", - ... current_step=3, - ... total_steps=10 - ... ) - >>> self.update_execution_data(execution_id, progress) - - Using custom WorkflowProgress subclass: - - >>> class MyProgress(WorkflowProgress): - ... data_processed_gb: float = 0.0 - >>> progress = MyProgress( - ... progress="Batch processing", - ... current_step=5, - ... total_steps=20, - ... data_processed_gb=150.5 - ... ) - >>> self.update_execution_data(execution_id, progress) + Args: + execution_id: Unique execution identifier + updates: Dictionary of fields to update, or WorkflowProgress instance. + If a WorkflowProgress object is provided, it will update the + 'progress' field of WorkflowResult. Dict updates can include + any WorkflowResult fields including 'progress', 'metadata', etc. + + Raises: + RuntimeError: If Redis client is not set + + Example: + # Using dict for general updates + self.update_execution_data(execution_id, { + "metadata": {"custom_field": "value"} + }) + + # Using WorkflowProgress for progress updates + progress = WorkflowProgress( + progress="Processing data...", + current_step=3, + total_steps=10 + ) + self.update_execution_data(execution_id, progress) + + # Using custom WorkflowProgress subclass + class MyProgress(WorkflowProgress): + data_processed_gb: float = 0.0 + + progress = MyProgress( + progress="Batch processing", + current_step=5, + total_steps=20, + data_processed_gb=150.5 + ) + self.update_execution_data(execution_id, progress) """ if not self.redis_client: raise RuntimeError("Redis client not set. Call set_redis_client() first.") @@ -454,15 +414,11 @@ def get_output_path(self, execution_id: str) -> Path: output directory path for a specific execution. The directory is automatically created if it doesn't exist. - Parameters - ---------- - execution_id : str - Unique execution identifier. + Args: + execution_id: Unique execution identifier - Returns - ------- - Path - Path object pointing to the output directory. + Returns: + Path object pointing to the output directory """ workflow_dir = self.output_dir / self.name / execution_id workflow_dir.mkdir(parents=True, exist_ok=True) @@ -478,19 +434,13 @@ def _get_execution_data( This method can only be called by the system, and should not be called by workflow implementations. - Parameters - ---------- - redis_client : redis.Redis - Redis client instance. - workflow_name : str - Name of the workflow. - execution_id : str - Unique execution identifier. + Args: + redis_client: Redis client instance + workflow_name: Name of the workflow + execution_id: Unique execution identifier - Returns - ------- - WorkflowResult - Execution data. + Returns: + WorkflowResult with execution data """ try: # Get execution data from Redis @@ -527,16 +477,11 @@ def _save_execution_data( This method can only be called by the system, and should not be called by workflow implementations. - Parameters - ---------- - redis_client : redis.Redis - Redis client instance. - workflow_name : str - Name of the workflow. - execution_id : str - Unique execution identifier. - data : WorkflowResult - WorkflowResult to save. + Args: + redis_client: Redis client instance + workflow_name: Name of the workflow + execution_id: Unique execution identifier + data: WorkflowResult to save """ try: redis_client.setex( @@ -563,16 +508,11 @@ def _update_execution_data( This method can only be called by the system, and should not be called by workflow implementations. - Parameters - ---------- - redis_client : redis.Redis - Redis client instance. - workflow_name : str - Name of the workflow. - execution_id : str - Unique execution identifier. - updates : dict - Dictionary of fields to update. + Args: + redis_client: Redis client instance + workflow_name: Name of the workflow + execution_id: Unique execution identifier + updates: Dictionary of fields to update """ try: # Get current data @@ -595,7 +535,7 @@ def _update_execution_data( def json_serial(obj: Any) -> Any: - """JSON serializer for objects not serializable by default json code.""" + """JSON serializer for objects not serializable by default json code""" if isinstance(obj, (datetime, date)): return obj.isoformat() @@ -605,7 +545,7 @@ def json_serial(obj: Any) -> Any: class WorkflowRegistry: - """Registry for managing custom workflows.""" + """Registry for managing custom workflows""" def __init__(self, **config: Any) -> None: self._workflows: dict[str, type[Workflow]] = {} @@ -615,22 +555,15 @@ def register(self, workflow_class: type[Workflow]) -> type[Workflow]: """ Register a workflow class. - Parameters - ---------- - workflow_class : type[Workflow] - Workflow class (not instance) to register. + Args: + workflow_class: Workflow class (not instance) to register - Returns - ------- - type[Workflow] - workflow_class (enabling the use of ``register`` as a decorator). + Returns: + workflow_class (enabling the use of ``register`` as a decorator) - Raises - ------ - TypeError - If workflow_class is not a class or not a Workflow subclass. - ValueError - If workflow name is already registered. + Raises: + TypeError: If workflow_class is not a class or not a Workflow subclass + ValueError: If workflow name is already registered """ # Skip registration in a non-API environment api_server_running = os.environ.get("EARTH2STUDIO_API_ACTIVE", "0") == "1" @@ -665,7 +598,7 @@ def register(self, workflow_class: type[Workflow]) -> type[Workflow]: return workflow_class def unregister(self, name: str) -> None: - """Unregister a workflow.""" + """Unregister a workflow""" if name not in self._workflows: raise ValueError(f"Workflow '{name}' is not registered") @@ -679,15 +612,11 @@ def get_workflow_class(self, name: str) -> type[Workflow] | None: """ Get a workflow class by name. - Parameters - ---------- - name : str - Name of the workflow. + Args: + name: Name of the workflow - Returns - ------- - type[Workflow] or None - Workflow class or None if not found. + Returns: + Workflow class or None if not found """ return self._workflows.get(name) @@ -700,17 +629,12 @@ def get( Creates a new instance on first call and caches it for subsequent calls. The instance is automatically initialized with the registered name and description. - Parameters - ---------- - name : str - Name of the workflow. - redis_client : redis.Redis or None, optional - Optional Redis client to set on the instance. + Args: + name: Name of the workflow + redis_client: Optional Redis client to set on the instance - Returns - ------- - Workflow or None - Cached workflow instance or None if not found. + Returns: + Cached workflow instance or None if not found """ workflow_class = self.get_workflow_class(name) if workflow_class is None: @@ -753,7 +677,7 @@ def is_workflow_exposed(self, workflow_name: str) -> bool: Returns: True if workflow should be exposed, False otherwise """ - from earth2studio.serve.server.config import get_config + from api_server.config import get_config config = get_config() exposed_workflows = config.workflow_exposure.exposed_workflows @@ -779,7 +703,7 @@ def list_workflows(self, exposed_only: bool = True) -> dict[str, str]: Dictionary mapping workflow names to descriptions """ if exposed_only: - from earth2studio.serve.server.config import get_config + from api_server.config import get_config config = get_config() exposed_workflows = config.workflow_exposure.exposed_workflows @@ -810,24 +734,16 @@ def discover_and_register_from_directories( """ Discover and register workflows from specified directories. - Parameters - ---------- - workflow_dirs : list - List of directory paths to search for workflow modules. - include_builtin : bool, optional - Whether to automatically include built-in example_workflows. Default is True. + Args: + workflow_dirs: List of directory paths to search for workflow modules + include_builtin: Whether to automatically include built-in example_workflows - Returns - ------- - tuple - (successful_imports, failed_imports) counts. + Returns: + tuple: (successful_imports, failed_imports) counts """ - # Always include built-in workflows if requested (serve/server/example_workflows) + # Always include built-in workflows if requested if include_builtin: - _repo_root = Path(__file__).resolve().parent.parent.parent.parent - builtin_workflows_dir = ( - _repo_root / "serve" / "server" / "example_workflows" - ) + builtin_workflows_dir = Path(__file__).parent.parent / "example_workflows" already_included = builtin_workflows_dir in {Path(d) for d in workflow_dirs} if builtin_workflows_dir.exists() and not already_included: # Add to the beginning so built-in workflows are discovered first @@ -913,10 +829,8 @@ def auto_register_workflows(self, redis_client: redis.Redis) -> None: This is the main entry point for workflow registration during server startup. - Parameters - ---------- - redis_client : redis.Redis - Redis client instance to set on registered workflows. + Args: + redis_client: Redis client instance to set on registered workflows """ try: logger.info("=" * 60) @@ -964,10 +878,8 @@ def parse_workflow_directories_from_env() -> list[str]: - Comma-separated list of directories - Colon-separated list of directories - Returns - ------- - list of str - List of directory paths to search for workflows. + Returns: + list: List of directory paths to search for workflows """ workflow_dirs = [] @@ -1006,16 +918,13 @@ def register_all_workflows(redis_client: redis.Redis) -> None: 1. Built-in example_workflows directory (always included) 2. User directories specified via WORKFLOW_DIR environment variable - Parameters - ---------- - redis_client : redis.Redis - Redis client instance to set on registered workflows. - - Examples - -------- - >>> import redis - >>> from earth2studio.serve.server.workflow import register_all_workflows - >>> redis_client = redis.Redis(host='localhost', port=6379) - >>> register_all_workflows(redis_client) + Args: + redis_client: Redis client instance to set on registered workflows + + Example: + >>> import redis + >>> from api_server.workflow import register_all_workflows + >>> redis_client = redis.Redis(host='localhost', port=6379) + >>> register_all_workflows(redis_client) """ workflow_registry.auto_register_workflows(redis_client) diff --git a/serve/server/env.example b/serve/inferenceserver/env.example similarity index 100% rename from serve/server/env.example rename to serve/inferenceserver/env.example diff --git a/serve/server/openapi.yaml b/serve/inferenceserver/openapi.yaml similarity index 100% rename from serve/server/openapi.yaml rename to serve/inferenceserver/openapi.yaml diff --git a/serve/server/requirements.txt b/serve/inferenceserver/requirements.txt similarity index 80% rename from serve/server/requirements.txt rename to serve/inferenceserver/requirements.txt index 69b3a0404..30815a96e 100644 --- a/serve/server/requirements.txt +++ b/serve/inferenceserver/requirements.txt @@ -1,7 +1,3 @@ -# For local runs from serve/server: install the project first so earth2studio.serve.server -# is importable: pip install -e ../.. -# (Dockerfile installs the project from repo root with -e . instead.) - # Core FastAPI dependencies fastapi>=0.104.0 uvicorn[standard]>=0.24.0 diff --git a/serve/server/scripts/profile_workflow.sh b/serve/inferenceserver/scripts/profile_workflow.sh similarity index 100% rename from serve/server/scripts/profile_workflow.sh rename to serve/inferenceserver/scripts/profile_workflow.sh diff --git a/serve/server/scripts/redis.conf b/serve/inferenceserver/scripts/redis.conf similarity index 100% rename from serve/server/scripts/redis.conf rename to serve/inferenceserver/scripts/redis.conf diff --git a/serve/server/scripts/start_api_server.sh b/serve/inferenceserver/scripts/start_api_server.sh similarity index 92% rename from serve/server/scripts/start_api_server.sh rename to serve/inferenceserver/scripts/start_api_server.sh index 1c03c1b04..ca92db083 100755 --- a/serve/server/scripts/start_api_server.sh +++ b/serve/inferenceserver/scripts/start_api_server.sh @@ -18,13 +18,10 @@ # Earth2Studio Multiple Workers Startup Script # This script starts multiple API workers, and RQ workers -# Get the directory where this script is located (or use env from Docker/startup.sh). -SCRIPT_DIR=${SCRIPT_DIR:-"$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"} -CONFIG_DIR=${CONFIG_DIR:-"${SCRIPT_DIR}/../conf"} -# Export so uvicorn/rq workers (Python) see them for CONFIG_DIR/SCRIPT_DIR in main.py and config.py -export SCRIPT_DIR -export CONFIG_DIR -export WORKFLOW_DIR +# Get the directory where this script is located. +SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" +# A way to override the config location while starting up the endpoint. +CONFIG_DIR=${CONFIG_DIR:-"${SCRIPT_DIR}/../api_server/conf"} CONFIG_FILE="$CONFIG_DIR/config.yaml" # Function to read config values from YAML using Python @@ -85,9 +82,9 @@ cleanup() { fi # Stop all API workers - if pgrep -f "uvicorn.*earth2studio.serve.server.main:app" > /dev/null; then + if pgrep -f "uvicorn.*api_server.main:app" > /dev/null; then echo "Stopping API workers..." - pkill -f "uvicorn.*earth2studio.serve.server.main:app" + pkill -f "uvicorn.*api_server.main:app" fi # Stop all RQ inference workers @@ -130,7 +127,7 @@ trap cleanup SIGINT SIGTERM export EARTH2STUDIO_API_ACTIVE=1 # Start multiple workers using uvicorn with extended timeouts for large file downloads -CUDA_VISIBLE_DEVICES="" uvicorn earth2studio.serve.server.main:app --host 0.0.0.0 --port $API_PORT --workers $NUM_WORKERS --loop asyncio --timeout-keep-alive 300 --timeout-graceful-shutdown 30 & +CUDA_VISIBLE_DEVICES="" uvicorn api_server.main:app --host 0.0.0.0 --port $API_PORT --workers $NUM_WORKERS --loop asyncio --timeout-keep-alive 300 --timeout-graceful-shutdown 30 & UVICORN_PID=$! # Start RQ workers @@ -187,7 +184,7 @@ for i in $(seq 1 $NUM_FINALIZE_WORKERS); do done # Start cleanup daemon -CUDA_VISIBLE_DEVICES="" python -m earth2studio.serve.server.cleanup_daemon & +CUDA_VISIBLE_DEVICES="" python -m api_server.cleanup_daemon & CLEANUP_DAEMON_PID=$! echo "Started cleanup daemon (PID: $CLEANUP_DAEMON_PID)" @@ -195,7 +192,7 @@ echo "Started cleanup daemon (PID: $CLEANUP_DAEMON_PID)" sleep 5 # Check if API workers are running -API_WORKER_COUNT=$(pgrep -f "uvicorn.*earth2studio.serve.server.main:app" | wc -l) +API_WORKER_COUNT=$(pgrep -f "uvicorn.*api_server.main:app" | wc -l) if [ "$API_WORKER_COUNT" -eq 0 ]; then echo "Failed to start API workers..." exit 1 diff --git a/serve/server/scripts/start_redis.sh b/serve/inferenceserver/scripts/start_redis.sh similarity index 100% rename from serve/server/scripts/start_redis.sh rename to serve/inferenceserver/scripts/start_redis.sh diff --git a/serve/server/scripts/startup.sh b/serve/inferenceserver/scripts/startup.sh similarity index 59% rename from serve/server/scripts/startup.sh rename to serve/inferenceserver/scripts/startup.sh index b5739fe07..5ba90f71f 100755 --- a/serve/server/scripts/startup.sh +++ b/serve/inferenceserver/scripts/startup.sh @@ -17,18 +17,16 @@ set -euo pipefail -# Use CONFIG_DIR/SCRIPT_DIR from env if set (e.g. in Docker); else resolve from script location -SCRIPT_DIR="${SCRIPT_DIR:-$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)}" -SERVE_SERVER_DIR="$(cd "$SCRIPT_DIR/.." && pwd)" -REPO_ROOT="$(cd "$SERVE_SERVER_DIR/../.." && pwd)" -export SCRIPT_DIR -export CONFIG_DIR="${CONFIG_DIR:-$SCRIPT_DIR/../conf}" -export WORKFLOW_DIR="${WORKFLOW_DIR:-}" +# Set EARTH2STUDIO_MODEL_CACHE to use AZUREML_MODEL_DIR if available +if [ -n "${AZUREML_MODEL_DIR:-}" ]; then + echo "AZUREML_MODEL_DIR: $AZUREML_MODEL_DIR" + export EARTH2STUDIO_MODEL_CACHE="$AZUREML_MODEL_DIR/${EARTH2STUDIO_MODEL_SUBPATH:-e2s_fcn3_stormscope}" + echo "--------------------------------" + echo "EARTH2STUDIO_MODEL_CACHE: $EARTH2STUDIO_MODEL_CACHE" + ls -la $EARTH2STUDIO_MODEL_CACHE && echo "--------------------------------" +fi -# Ensure Python can find earth2studio (including earth2studio.serve.server) -export PYTHONPATH="${REPO_ROOT}:${PYTHONPATH:-}" - -cd "$SERVE_SERVER_DIR" +cd /workspace/earth2studio-project/serve/inferenceserver make start-redis make start-api-server sleep infinity diff --git a/serve/server/scripts/status.sh b/serve/inferenceserver/scripts/status.sh similarity index 98% rename from serve/server/scripts/status.sh rename to serve/inferenceserver/scripts/status.sh index 2dcdaadf4..5fc56b48c 100755 --- a/serve/server/scripts/status.sh +++ b/serve/inferenceserver/scripts/status.sh @@ -52,7 +52,7 @@ echo "" # Check API workers status echo "API Workers:" -API_WORKERS=$(pgrep -f "uvicorn.*earth2studio.serve.server.main:app") +API_WORKERS=$(pgrep -f "uvicorn.*api_server.main:app") if [ -n "$API_WORKERS" ]; then WORKER_COUNT=$(echo "$API_WORKERS" | wc -l) echo " Status: Running ($WORKER_COUNT workers)" diff --git a/serve/server/scripts/stop_api_server.sh b/serve/inferenceserver/scripts/stop_api_server.sh similarity index 96% rename from serve/server/scripts/stop_api_server.sh rename to serve/inferenceserver/scripts/stop_api_server.sh index 6f00e0830..fc612450f 100755 --- a/serve/server/scripts/stop_api_server.sh +++ b/serve/inferenceserver/scripts/stop_api_server.sh @@ -19,7 +19,7 @@ echo "Stopping API Server..." # Stop API workers echo "Stopping API workers..." -pkill -f "uvicorn.*earth2studio.serve.server.main:app" +pkill -f "uvicorn.*api_server.main:app" # Stop RQ inference workers echo "Stopping RQ inference workers..." diff --git a/serve/server/scripts/stop_redis.sh b/serve/inferenceserver/scripts/stop_redis.sh similarity index 100% rename from serve/server/scripts/stop_redis.sh rename to serve/inferenceserver/scripts/stop_redis.sh diff --git a/serve/server/test/unit/test_e2workflow.py b/serve/test/unit/test_e2workflow.py similarity index 82% rename from serve/server/test/unit/test_e2workflow.py rename to serve/test/unit/test_e2workflow.py index b275bd433..6a4e08d1f 100644 --- a/serve/server/test/unit/test_e2workflow.py +++ b/serve/test/unit/test_e2workflow.py @@ -14,21 +14,22 @@ # See the License for the specific language governing permissions and # limitations under the License. -from collections import OrderedDict -from pathlib import Path from unittest.mock import MagicMock, Mock, patch import pytest -import redis # type: ignore[import-untyped] +import redis import torch - -from earth2studio.io import IOBackend -from earth2studio.serve.server import Earth2Workflow, WorkflowParameters -from earth2studio.serve.server.e2workflow import ( +from api_server.workflow import ( + Earth2Workflow, + WorkflowParameters, +) +from api_server.workflow.e2workflow import ( AutoParameters, BackendProgress, func_to_model, ) + +from earth2studio.io import IOBackend from earth2studio.utils.type import CoordSystem @@ -36,12 +37,10 @@ class TestFuncToModel: """Test func_to_model helper function""" - def test_function_to_model_conversion(self) -> None: + def test_function_to_model_conversion(self): """Test converting function signature to Pydantic model""" - def test_func( - required: int, optional: str = "default", exclude_me: int = 0 - ) -> None: + def test_func(required: int, optional: str = "default", exclude_me: int = 0): pass model = func_to_model(test_func, exclude_params={"exclude_me"}) @@ -58,11 +57,11 @@ def test_func( class TestAutoParameters: """Test AutoParameters metaclass""" - def test_auto_generates_parameters_from_call_signature(self) -> None: + def test_auto_generates_parameters_from_call_signature(self): """Test that AutoParameters creates Parameters from __call__ signature""" class TestWorkflow(metaclass=AutoParameters): - def __call__(self, io: IOBackend, x: int, y: str = "default") -> None: + def __call__(self, io: IOBackend, x: int, y: str = "default"): pass # Verify Parameters class is created with correct name @@ -81,7 +80,7 @@ def __call__(self, io: IOBackend, x: int, y: str = "default") -> None: class TestEarth2WorkflowImpl(Earth2Workflow): """Simple test implementation of Earth2Workflow""" - def __call__(self, io: IOBackend, x: int = 10, y: str = "default") -> None: + def __call__(self, io: IOBackend, x: int = 10, y: str = "default"): """Test implementation with simple parameters""" # Store call info for testing self.called_with = {"io": io, "x": x, "y": y} @@ -96,7 +95,7 @@ def __call__( required_param: int, optional_param: str = "default", num_hours: int = 24, - ) -> None: + ): """Test implementation with required and optional parameters""" self.called_with = { "io": io, @@ -110,12 +109,12 @@ def __call__( class TestEarth2Workflow: """Test Earth2Workflow-specific functionality (base Workflow tests in test_workflow.py)""" - def setup_method(self) -> None: + def setup_method(self): """Set up test fixtures""" self.workflow = TestEarth2WorkflowImpl() self.workflow.name = "test_workflow" - def test_validate_parameters_uses_auto_generated_parameters(self) -> None: + def test_validate_parameters_uses_auto_generated_parameters(self): """Test that validate_parameters works with auto-generated Parameters class""" params = TestEarth2WorkflowImpl.validate_parameters({"x": 30, "y": "test"}) assert isinstance(params, WorkflowParameters) @@ -126,10 +125,10 @@ def test_validate_parameters_uses_auto_generated_parameters(self) -> None: with pytest.raises(ValueError): ComplexEarth2WorkflowImpl.validate_parameters({"optional_param": "test"}) - @patch("earth2studio.serve.server.e2workflow.get_config") + @patch("api_server.e2workflow.get_config") def test_run_method_with_io_backend_and_progress_updates( - self, mock_get_config: MagicMock, tmp_path: Path - ) -> None: + self, mock_get_config, tmp_path + ): """Test Earth2Workflow.run creates IOBackend and updates progress""" mock_config = MagicMock() mock_config.paths.output_format = "zarr" @@ -141,7 +140,7 @@ def test_run_method_with_io_backend_and_progress_updates( with ( patch.object(self.workflow, "update_execution_data") as mock_update, patch.object(self.workflow, "get_output_path") as mock_get_path, - patch("earth2studio.serve.server.e2workflow.ZarrBackend") as mock_zarr, + patch("api_server.e2workflow.ZarrBackend") as mock_zarr, ): mock_get_path.return_value = tmp_path / "test_output" mock_io = Mock(spec=IOBackend) @@ -157,17 +156,15 @@ def test_run_method_with_io_backend_and_progress_updates( # Verify progress updates were made assert mock_update.call_count >= 2 - @patch("earth2studio.serve.server.e2workflow.get_config") - def test_run_method_handles_workflow_exceptions( - self, mock_get_config: MagicMock - ) -> None: + @patch("api_server.e2workflow.get_config") + def test_run_method_handles_workflow_exceptions(self, mock_get_config): """Test that run method properly handles exceptions from workflow execution""" mock_config = MagicMock() mock_config.paths.output_format = "zarr" mock_get_config.return_value = mock_config class FailingWorkflow(Earth2Workflow): - def __call__(self, io: IOBackend, x: int = 10) -> None: + def __call__(self, io: IOBackend, x: int = 10): raise RuntimeError("Workflow execution failed") failing_workflow = FailingWorkflow() @@ -177,7 +174,7 @@ def __call__(self, io: IOBackend, x: int = 10) -> None: with ( patch.object(failing_workflow, "update_execution_data") as mock_update, patch.object(failing_workflow, "get_output_path"), - patch("earth2studio.serve.server.e2workflow.ZarrBackend"), + patch("api_server.e2workflow.ZarrBackend"), ): with pytest.raises(RuntimeError, match="Workflow execution failed"): failing_workflow.run({}, "exec_fail") @@ -195,7 +192,7 @@ def __call__(self, io: IOBackend, x: int = 10) -> None: class TestBackendProgress: """Test BackendProgress wrapper for progress tracking""" - def setup_method(self) -> None: + def setup_method(self): """Set up test fixtures""" self.mock_io = Mock(spec=IOBackend) self.mock_workflow = Mock(spec=Earth2Workflow) @@ -204,9 +201,9 @@ def setup_method(self) -> None: self.mock_io, self.mock_workflow, self.execution_id ) - def test_add_array_initializes_progress_tracking(self) -> None: + def test_add_array_initializes_progress_tracking(self): """Test that add_array initializes progress tracking when progress_dim present""" - coords = OrderedDict({"lead_time": [0, 1, 2, 3], "lat": [0, 1]}) + coords = {"lead_time": [0, 1, 2, 3], "lat": [0, 1]} self.backend.add_array(coords, "temperature") @@ -221,23 +218,23 @@ def test_add_array_initializes_progress_tracking(self) -> None: self.backend.add_array(coords, "pressure") assert self.backend.progress_array == "temperature" - def test_write_updates_progress(self) -> None: + def test_write_updates_progress(self): """Test that write updates progress for tracked arrays""" # Initialize progress tracking - init_coords: CoordSystem = OrderedDict({"lead_time": [0, 1, 2], "lat": [0, 1]}) + init_coords: CoordSystem = {"lead_time": [0, 1, 2], "lat": [0, 1]} self.backend.add_array(init_coords, "temperature") self.mock_workflow.update_execution_data.reset_mock() # Write data at different time steps data = torch.randn(1, 2) - write_coords1: CoordSystem = OrderedDict({"lead_time": [0], "lat": [0, 1]}) + write_coords1: CoordSystem = {"lead_time": [0], "lat": [0, 1]} self.backend.write(data, write_coords1, "temperature") self.mock_workflow.update_execution_data.assert_called_with( self.execution_id, updates={"current_step": 1} ) - write_coords2: CoordSystem = OrderedDict({"lead_time": [2], "lat": [0, 1]}) + write_coords2: CoordSystem = {"lead_time": [2], "lat": [0, 1]} self.backend.write(data, write_coords2, "temperature") self.mock_workflow.update_execution_data.assert_called_with( self.execution_id, updates={"current_step": 3} @@ -258,29 +255,23 @@ def test_passthrough_to_underlying_io(self) -> None: class TestEarth2WorkflowIntegration: """Integration tests for Earth2Workflow with BackendProgress""" - @patch("earth2studio.serve.server.e2workflow.get_config") - def test_workflow_with_backend_progress_tracking( - self, mock_get_config: MagicMock - ) -> None: + @patch("api_server.e2workflow.get_config") + def test_workflow_with_backend_progress_tracking(self, mock_get_config): """Test complete workflow execution with automatic progress tracking""" mock_config = MagicMock() mock_config.paths.output_format = "zarr" mock_get_config.return_value = mock_config class TestWorkflow(Earth2Workflow): - def __call__(self, io: IOBackend, num_steps: int = 3) -> None: - coords: CoordSystem = OrderedDict( - { - "lead_time": list(range(num_steps)), - "lat": [0, 1], - } - ) + def __call__(self, io: IOBackend, num_steps: int = 3): + coords: CoordSystem = { + "lead_time": list(range(num_steps)), + "lat": [0, 1], + } io.add_array(coords, "forecast") for i in range(num_steps): data = torch.randn(1, 2) - write_coords: CoordSystem = OrderedDict( - {"lead_time": [i], "lat": [0, 1]} - ) + write_coords: CoordSystem = {"lead_time": [i], "lat": [0, 1]} io.write(data, write_coords, "forecast") workflow = TestWorkflow() @@ -290,7 +281,7 @@ def __call__(self, io: IOBackend, num_steps: int = 3) -> None: with ( patch.object(workflow, "update_execution_data") as mock_update, patch.object(workflow, "get_output_path"), - patch("earth2studio.serve.server.e2workflow.ZarrBackend"), + patch("api_server.e2workflow.ZarrBackend"), ): result = workflow.run({"num_steps": 3}, "exec_test") diff --git a/serve/server/test/unit/test_e2workflow_params.py b/serve/test/unit/test_e2workflow_params.py similarity index 86% rename from serve/server/test/unit/test_e2workflow_params.py rename to serve/test/unit/test_e2workflow_params.py index a62984613..691bb5f7c 100644 --- a/serve/server/test/unit/test_e2workflow_params.py +++ b/serve/test/unit/test_e2workflow_params.py @@ -21,26 +21,41 @@ import os from datetime import datetime from typing import Literal +from unittest.mock import Mock import pytest from pydantic import ValidationError -from earth2studio.io import IOBackend -from earth2studio.serve.server.e2workflow import Earth2Workflow, func_to_model - # Set environment variable before importing workflows os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" +# Try to import earth2studio, skip tests if not available +try: + from earth2studio.io import IOBackend + + EARTH2STUDIO_AVAILABLE = True +except ImportError: + EARTH2STUDIO_AVAILABLE = False + IOBackend = Mock # Mock for type hints + +# ruff: noqa: E402 +from api_server.workflow.e2workflow import Earth2Workflow, func_to_model + +# Skip all tests in this module if earth2studio is not available +pytestmark = pytest.mark.skipif( + not EARTH2STUDIO_AVAILABLE, reason="earth2studio not available in test environment" +) + class TestAutoParametersValidation: """Test validation of auto-generated parameters from Earth2Workflow""" - def test_auto_parameters_with_num_steps_validation(self) -> None: + def test_auto_parameters_with_num_steps_validation(self): """Test that num_steps parameter gets automatic range validation""" # Create a mock Earth2Workflow with num_steps parameter class TestWorkflow(Earth2Workflow): - def __init__(self, model_type: Literal["fcn", "dlwp"] = "fcn") -> None: + def __init__(self, model_type: Literal["fcn", "dlwp"] = "fcn"): pass def __call__( @@ -48,7 +63,7 @@ def __call__( io: IOBackend, start_time: list[datetime] = [datetime(2024, 1, 1, 0)], num_steps: int = 20, - ) -> None: + ): pass # Test valid num_steps @@ -77,18 +92,18 @@ def __call__( } ) - def test_auto_parameters_with_start_time_validation(self) -> None: + def test_auto_parameters_with_start_time_validation(self): """Test that start_time parameter gets ISO 8601 validation""" class TestWorkflow(Earth2Workflow): - def __init__(self) -> None: + def __init__(self): pass def __call__( self, io: IOBackend, start_time: list[datetime] = [datetime(2024, 1, 1, 0)], - ) -> None: + ): pass # Test valid ISO 8601 formats @@ -116,14 +131,14 @@ def __call__( ): TestWorkflow.validate_parameters({"start_time": times}) - def test_auto_parameters_with_config_validation(self) -> None: + def test_auto_parameters_with_config_validation(self): """Test that __init__ parameters get proper validation""" class TestWorkflow(Earth2Workflow): - def __init__(self, model_type: Literal["fcn", "dlwp"] = "fcn") -> None: + def __init__(self, model_type: Literal["fcn", "dlwp"] = "fcn"): self.model_type = model_type - def __call__(self, io: IOBackend) -> None: + def __call__(self, io: IOBackend): pass # Valid model_type @@ -140,14 +155,14 @@ def __call__(self, io: IOBackend) -> None: with pytest.raises(ValidationError): TestWorkflow.Config.model_validate({"model_type": "invalid"}) - def test_auto_parameters_nsteps_variant(self) -> None: + def test_auto_parameters_nsteps_variant(self): """Test that nsteps (alternate spelling) also gets range validation""" class TestWorkflow(Earth2Workflow): - def __init__(self) -> None: + def __init__(self): pass - def __call__(self, io: IOBackend, nsteps: int = 10) -> None: + def __call__(self, io: IOBackend, nsteps: int = 10): pass # Valid nsteps @@ -158,7 +173,7 @@ def __call__(self, io: IOBackend, nsteps: int = 10) -> None: with pytest.raises(ValidationError, match="greater than or equal to 1"): TestWorkflow.validate_parameters({"nsteps": 0}) - def test_func_to_model_with_validation(self) -> None: + def test_func_to_model_with_validation(self): """Test func_to_model creates models with proper validation""" def test_func( @@ -184,11 +199,11 @@ def test_func( with pytest.raises(ValidationError, match="is not a valid ISO 8601"): TestModel.model_validate({"start_time": ["2024-01-01"]}) # Missing time - def test_auto_parameters_with_defaults(self) -> None: + def test_auto_parameters_with_defaults(self): """Test that default values work correctly with validation""" class TestWorkflow(Earth2Workflow): - def __init__(self) -> None: + def __init__(self): pass def __call__( @@ -196,7 +211,7 @@ def __call__( io: IOBackend, start_time: list[datetime] = [datetime(2024, 1, 1, 0)], num_steps: int = 20, - ) -> None: + ): pass # Use defaults @@ -214,7 +229,7 @@ def __call__( class TestEarth2WorkflowIntegration: """Integration tests for Earth2Workflow validation""" - def test_complete_workflow_validation(self) -> None: + def test_complete_workflow_validation(self): """Test complete validation workflow""" class CompleteWorkflow(Earth2Workflow): @@ -222,7 +237,7 @@ def __init__( self, model_type: Literal["fcn", "dlwp"] = "fcn", device: Literal["cpu", "cuda"] = "cpu", - ) -> None: + ): self.model_type = model_type self.device = device @@ -232,7 +247,7 @@ def __call__( start_time: list[datetime] = [datetime(2024, 1, 1, 0)], num_steps: int = 20, output_frequency: int = 1, - ) -> None: + ): pass # Test valid complete parameters @@ -259,14 +274,14 @@ def __call__( with pytest.raises(ValidationError): CompleteWorkflow.validate_parameters({"num_steps": -1}) - def test_workflow_with_extra_fields_rejected(self) -> None: + def test_workflow_with_extra_fields_rejected(self): """Test that extra fields are rejected due to strict validation""" class TestWorkflow(Earth2Workflow): - def __init__(self) -> None: + def __init__(self): pass - def __call__(self, io: IOBackend, num_steps: int = 20) -> None: + def __call__(self, io: IOBackend, num_steps: int = 20): pass # Extra field should be rejected diff --git a/test/Dockerfile b/test/Dockerfile index f7547d178..413fa7d24 100644 --- a/test/Dockerfile +++ b/test/Dockerfile @@ -1,6 +1,6 @@ FROM nvcr.io/nvidia/cuda:12.8.1-cudnn-devel-ubuntu24.04 # Install uv -COPY --from=ghcr.io/astral-sh/uv:0.10.9 /uv /uvx /bin/ +COPY --from=ghcr.io/astral-sh/uv:0.9.7 /uv /uvx /bin/ # Install system dependencies RUN apt-get update && apt-get install -y \ python3-dev \ diff --git a/test/data/test_data_utils.py b/test/data/test_data_utils.py index f9c3eaf5b..3eeeea098 100644 --- a/test/data/test_data_utils.py +++ b/test/data/test_data_utils.py @@ -20,7 +20,6 @@ from collections import OrderedDict import numpy as np -import pandas as pd import pytest import torch import xarray as xr @@ -29,17 +28,11 @@ from earth2studio.data import ( DataArrayFile, Random, - RandomDataFrame, datasource_to_file, fetch_data, - fetch_dataframe, prep_data_array, ) -from earth2studio.data.utils import ( - AsyncCachingFileSystem, - datasource_cache_root, - prep_forecast_inputs, -) +from earth2studio.data.utils import AsyncCachingFileSystem, datasource_cache_root @pytest.fixture @@ -120,7 +113,6 @@ def test_prep_dataarray(foo_data_array, dims, device): def test_prep_data_array_curvilinear(equilinear_data_array, curvilinear_data_array): - pytest.importorskip("scipy", reason="scipy not installed") # Create another curvilinear grid y, x = np.mgrid[0:20, 0:24] target_lat = 30 + y * 1 + np.cos(x * 0.3) * 0.3 @@ -192,118 +184,6 @@ def test_fetch_data(time, lead_time, device): assert not torch.isnan(x).any() -@pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], -) -def test_fetch_data_legacy_false(device): - - if device == "cuda:0" and torch.cuda.is_available(): - try: - import cupy as cp - except ImportError: - pytest.skip("cupy not available for CUDA device") - - time = np.array([np.datetime64("1993-04-05T00:00")]) - lead_time = np.array([np.timedelta64(0, "h")]) - variable = np.array(["a", "b", "c"]) - domain = OrderedDict({"lat": np.random.randn(720), "lon": np.random.randn(1440)}) - r = Random(domain) - - da = fetch_data(r, time, variable, lead_time, device=device, legacy=False) - - assert isinstance(da, xr.DataArray) - assert da.dims == ("time", "lead_time", "variable", "lat", "lon") - assert np.all(da.coords["time"].values == time) - assert np.all(da.coords["lead_time"].values == lead_time) - assert np.all(da.coords["variable"].values == variable) - - if device == "cuda:0" and torch.cuda.is_available(): - assert isinstance(da.data, cp.ndarray) - assert not cp.all(cp.isnan(da.data)) - else: - assert isinstance(da.data, np.ndarray) - assert not np.all(np.isnan(da.data)) - - -@pytest.mark.parametrize( - "time", - [ - np.array([np.datetime64("1993-04-05T00:00")]), - np.array( - [ - np.datetime64("1999-10-11T12:00"), - np.datetime64("2001-06-04T00:00"), - ] - ), - ], -) -@pytest.mark.parametrize( - "lead_time", - [ - np.array([np.timedelta64(0, "h")]), - np.array([np.timedelta64(-6, "h"), np.timedelta64(0, "h")]), - ], -) -@pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], -) -def test_fetch_dataframe(time, lead_time, device): - variable = np.array(["t2m", "u10m"]) - rdf = RandomDataFrame(n_obs=5) - - # For CUDA, check if cudf is available first - if device != "cpu": - try: - import cudf - except ImportError: - pytest.skip("cudf not available for CUDA device") - - result = fetch_dataframe(rdf, time, variable, lead_time=lead_time, device=device) - - # Check return type based on device - if device == "cpu": - assert isinstance(result, pd.DataFrame) - df = result - else: - # CUDA device - should return cudf.DataFrame - import cudf - - assert isinstance(result, cudf.DataFrame) - df = result.to_pandas() - - # Check that DataFrame has expected columns - assert "time" in df.columns - assert "lat" in df.columns - assert "lon" in df.columns - assert "observation" in df.columns - assert "variable" in df.columns - - # Check that variables match - assert set(df["variable"].unique()).issubset(set(variable)) - - # Check that we have data - assert len(df) > 0 - assert not df.isnull().any().any() - - @pytest.mark.parametrize( "time", [ @@ -325,7 +205,6 @@ def test_fetch_dataframe(time, lead_time, device): ) @pytest.mark.parametrize("device", ["cpu", "cuda:0"]) def test_fetch_data_interp(time, lead_time, device): - pytest.importorskip("scipy", reason="scipy not installed") # Original (source) domain variable = np.array(["a", "b", "c"]) domain = OrderedDict( @@ -562,64 +441,6 @@ def test_clear_cache(tmp_path): assert not os.path.exists(dummy_file) -@pytest.mark.parametrize( - "time, lead_time, variable", - [ - (datetime.datetime(2020, 1, 1, 12, 0), datetime.timedelta(hours=6), "t2m"), - ( - [ - datetime.datetime(2020, 1, 1, 12, 0), - datetime.datetime(2020, 1, 2, 12, 0), - ], - [datetime.timedelta(hours=6), datetime.timedelta(hours=12)], - ["t2m", "u10m"], - ), - ( - np.array( - [np.datetime64("2020-01-01T12:00"), np.datetime64("2020-01-02T12:00")] - ), - np.array([np.timedelta64(6, "h"), np.timedelta64(12, "h")]), - np.array(["t2m", "u10m", "v10m"]), - ), - ], -) -def test_prep_forecast_inputs(time, lead_time, variable): - time_list, lead_time_list, variable_list = prep_forecast_inputs( - time, lead_time, variable - ) - - assert isinstance(time_list, list) - assert all(isinstance(t, datetime.datetime) for t in time_list) - - assert isinstance(lead_time_list, list) - assert all(isinstance(lt, datetime.timedelta) for lt in lead_time_list) - - assert isinstance(variable_list, list) - assert all(isinstance(v, str) for v in variable_list) - - # Verify correct lengths - if isinstance(time, datetime.datetime): - assert len(time_list) == 1 - elif isinstance(time, list): - assert len(time_list) == len(time) - else: # np.ndarray - assert len(time_list) == len(time) - - if isinstance(lead_time, datetime.timedelta): - assert len(lead_time_list) == 1 - elif isinstance(lead_time, list): - assert len(lead_time_list) == len(lead_time) - else: # np.ndarray - assert len(lead_time_list) == len(lead_time) - - if isinstance(variable, str): - assert len(variable_list) == 1 - elif isinstance(variable, list): - assert len(variable_list) == len(variable) - else: # np.ndarray - assert len(variable_list) == len(variable) - - @pytest.mark.asyncio async def test_async_cache_fs_storage_handling(tmp_path): fs = HTTPFileSystem() diff --git a/test/data/test_goes.py b/test/data/test_goes.py index d6543705f..d3b03dab7 100644 --- a/test/data/test_goes.py +++ b/test/data/test_goes.py @@ -219,7 +219,6 @@ def test_goes_sources(satellite, scan_mode, time, variable, valid): assert shape[3] == expected_dims[1] -@pytest.mark.xfail @pytest.mark.timeout(15) @pytest.mark.parametrize( "time", diff --git a/test/models/da/test_da_interp.py b/test/models/da/test_da_interp.py deleted file mode 100644 index 0fa10aa2a..000000000 --- a/test/models/da/test_da_interp.py +++ /dev/null @@ -1,359 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. -import numpy as np -import pandas as pd -import pytest -import torch -import xarray as xr - -try: - import cudf -except ImportError: - cudf = None - -try: - import cupy as cp -except ImportError: - cp = None - -from earth2studio.models.da.interp import InterpEquirectangular - - -@pytest.fixture -def sample_observations_pandas(): - """Create sample pandas DataFrame observations for testing with multiple times and variables.""" - time1 = np.datetime64("2024-01-01T12:00:00") - time2 = np.datetime64("2024-01-01T13:00:00") - return pd.DataFrame( - { - "time": [ - time1, - time1, - time1, - time1, - time2, - time2, - time2, - time2, - ], - "lat": [30.0, 30.0, 40.0, 40.0, 30.0, 30.0, 40.0, 40.0], - "lon": [240.0, 250.0, 240.0, 250.0, 240.0, 250.0, 240.0, 250.0], - "observation": [10.0, 20.0, 25.0, 35.0, 30.0, 40.0, 35.0, 45.0], - "variable": ["t2m", "t2m", "u10m", "u10m", "t2m", "t2m", "u10m", "u10m"], - } - ) - - -@pytest.fixture -def sample_observations_cudf(): - """Create sample cudf DataFrame observations for testing with multiple times and variables.""" - if cudf is None: - pytest.skip("cudf not available") - time1 = np.datetime64("2024-01-01T12:00:00") - time2 = np.datetime64("2024-01-01T13:00:00") - return cudf.DataFrame( - { - "time": [ - time1, - time1, - time1, - time1, - time2, - time2, - time2, - time2, - ], - "lat": [30.0, 30.0, 40.0, 40.0, 30.0, 30.0, 40.0, 40.0], - "lon": [240.0, 250.0, 240.0, 250.0, 240.0, 250.0, 240.0, 250.0], - "observation": [10.0, 20.0, 30.0, 40.0, 30.0, 40.0, 50.0, 60.0], - "variable": ["t2m", "t2m", "u10m", "u10m", "t2m", "t2m", "u10m", "u10m"], - } - ) - - -@pytest.fixture -def small_grid(): - """Create a small lat/lon grid for testing.""" - lat = np.linspace(25.0, 50.0, 11, dtype=np.float32) - lon = np.linspace(235.0, 295.0, 13, dtype=np.float32) - return lat, lon - - -@pytest.mark.parametrize( - "interp_method", - ["nearest", "smolyak"], -) -def test_interp_init(interp_method, small_grid): - lat, lon = small_grid - model = InterpEquirectangular(lat=lat, lon=lon, interp_method=interp_method) - assert model.interp_method == interp_method - assert np.array_equal(model._lat, lat) - assert np.array_equal(model._lon, lon) - - with pytest.raises(ValueError, match="interp_method must be one of"): - InterpEquirectangular(interp_method="invalid") - - -@pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], -) -@pytest.mark.parametrize( - "interp_method", - ["nearest", "smolyak"], -) -def test_interp_call_pandas( - sample_observations_pandas, small_grid, device, interp_method -): - lat, lon = small_grid - model = InterpEquirectangular(lat=lat, lon=lon, interp_method=interp_method).to( - device - ) - - # Set up request metadata - request_time = np.array([np.datetime64("2024-01-01T12:00:00")]) - sample_observations_pandas.attrs = { - "request_time": request_time, - "request_lead_time": np.array([np.timedelta64(0, "h")]), - } - - da = model(sample_observations_pandas) - - assert isinstance(da, xr.DataArray) - assert da.dims == ("time", "variable", "lat", "lon") - assert da.shape == (1, 4, len(lat), len(lon)) # 4 times, 2 variables - assert da.coords["time"].values[0] == request_time[0] - assert len(da.coords["variable"]) == 4 - assert "t2m" in da.coords["variable"].values - assert "u10m" in da.coords["variable"].values - assert np.array_equal(da.coords["lat"].values, lat) - assert np.array_equal(da.coords["lon"].values, lon) - - # Check device-specific return type - if device == "cuda:0" and torch.cuda.is_available(): - if cp is not None: - assert isinstance(da.data, cp.ndarray) - assert not cp.all(cp.isnan(da.data)) - else: - # If cupy not available, should fall back to numpy - assert isinstance(da.data, np.ndarray) - else: - assert isinstance(da.data, np.ndarray) - assert not np.all(np.isnan(da.values)) - - -@pytest.mark.parametrize( - "device", - [ - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], -) -@pytest.mark.parametrize( - "interp_method", - ["nearest", "smolyak"], -) -def test_interp_call_cudf(sample_observations_cudf, small_grid, device, interp_method): - if cudf is None: - pytest.skip("cudf not available") - if not torch.cuda.is_available(): - pytest.skip("CUDA not available") - - lat, lon = small_grid - model = InterpEquirectangular(lat=lat, lon=lon, interp_method=interp_method).to( - device - ) - - # Set up request metadata - request_time = np.array([np.datetime64("2024-01-01T12:00:00")]) - sample_observations_cudf.attrs = { - "request_time": request_time, - "request_lead_time": np.array([np.timedelta64(0, "h")]), - } - - da = model(sample_observations_cudf) - - assert isinstance(da, xr.DataArray) - assert da.dims == ("time", "variable", "lat", "lon") - assert da.shape == (1, 4, len(lat), len(lon)) # 1 time, 4 variables - assert da.coords["time"].values[0] == request_time[0] - assert len(da.coords["variable"]) == 4 - assert "t2m" in da.coords["variable"].values - assert "u10m" in da.coords["variable"].values - assert np.array_equal(da.coords["lat"].values, lat) - assert np.array_equal(da.coords["lon"].values, lon) - - # Check device-specific return type - if cp is not None: - assert isinstance(da.data, cp.ndarray) - assert not cp.all(cp.isnan(da.data)) - t2m_data = da.sel(variable="t2m").data - u10m_data = da.sel(variable="u10m").data - assert not cp.any(cp.isnan(t2m_data)) - assert not cp.any(cp.isnan(u10m_data)) - else: - assert isinstance(da.data, np.ndarray) - assert not np.all(np.isnan(da.values)) - t2m_data = da.sel(variable="t2m").values - u10m_data = da.sel(variable="u10m").values - assert not np.any(np.isnan(t2m_data)) - assert not np.any(np.isnan(u10m_data)) - - -def test_interp_multiple_times(sample_observations_pandas, small_grid): - lat, lon = small_grid - model = InterpEquirectangular(lat=lat, lon=lon, interp_method="nearest") - model.VARIABLES = ["t2m"] - - time1 = np.datetime64("2024-01-01T12:00:00") - time2 = np.datetime64("2024-01-01T13:00:00") - request_time = np.array([time1, time2]) - sample_observations_pandas.attrs = { - "request_time": request_time, - "request_lead_time": np.array([np.timedelta64(0, "h"), np.timedelta64(0, "h")]), - } - - da = model(sample_observations_pandas) - - assert da.shape == (2, 1, len(lat), len(lon)) # 2 times, 1 variable - assert len(da.coords["time"]) == 2 - assert da.coords["time"].values[0] == time1 - assert da.coords["time"].values[1] == time2 - - # Verify interpolated values for each time step - # time1 t2m observations: (30.0, 240.0) = 10.0, (30.0, 250.0) = 20.0 - # time2 t2m observations: (30.0, 240.0) = 15.0, (30.0, 250.0) = 25.0 - time1_data = da.sel(time=time1).values - time2_data = da.sel(time=time2).values - - assert not np.all(np.isnan(time1_data)) - assert not np.all(np.isnan(time2_data)) - - # Values should be different between time steps - assert not np.allclose(time1_data, time2_data, equal_nan=True) - - if len(time1_data) > 0: - assert np.min(time1_data) >= 0 # Should be positive based on observations - assert np.max(time1_data) <= 25 # Should be close to max observation (20.0) - - if len(time2_data) > 0: - assert np.min(time2_data) >= 30 # Should be close to min observation (15.0) - assert np.max(time2_data) <= 40 # Should be close to max observation (25.0) - - -@pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], -) -def test_interp_tolerance(sample_observations_pandas, small_grid, device): - lat, lon = small_grid - # Use a larger tolerance to capture observations - time_tolerance = np.timedelta64(2, "h") - model = InterpEquirectangular(lat=lat, lon=lon, time_tolerance=time_tolerance).to( - device - ) - - # Create observations with times spread out - base_time = np.datetime64("2024-01-01T12:00:00") - time1 = base_time - np.timedelta64(1, "h") - time2 = base_time - time3 = base_time + np.timedelta64(1, "h") - time4 = base_time + np.timedelta64(3, "h") # Outside tolerance - - tolerance_df = pd.DataFrame( - { - "time": [time1, time2, time3, time4], - "lat": [30.0, 30.0, 40.0, 40.0], - "lon": [240.0, 250.0, 240.0, 250.0], - "observation": [10.0, 20.0, 30.0, 40.0], - "variable": ["t2m", "t2m", "t2m", "t2m"], - } - ) - - request_time = np.array([base_time]) - tolerance_df.attrs = { - "request_time": request_time, - "request_lead_time": np.array([np.timedelta64(0, "h")]), - } - - da = model(tolerance_df) - - # Should interpolate using observations within tolerance (time1, time2, time3) - assert da.shape == (1, 4, len(lat), len(lon)) - if cp is not None and isinstance(da.data, cp.ndarray): - assert not cp.all(cp.isnan(da.data)) - else: - assert not np.all(np.isnan(da.values)) - - -@pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], -) -def test_interp_generator(sample_observations_pandas, small_grid, device): - lat, lon = small_grid - model = InterpEquirectangular(lat=lat, lon=lon).to(device) - - request_time = np.array([np.datetime64("2024-01-01T12:00:00")]) - sample_observations_pandas.attrs = { - "request_time": request_time, - "request_lead_time": np.array([np.timedelta64(0, "h")]), - } - - generator = model.create_generator() - # Prime the generator - result = generator.send(None) - assert result is None - - # Send observations - da = generator.send(sample_observations_pandas) - assert isinstance(da, xr.DataArray) - assert da.shape == (1, 4, len(lat), len(lon)) - - # Send another set of observations - da2 = generator.send(sample_observations_pandas) - assert isinstance(da2, xr.DataArray) - assert da2.shape == (1, 4, len(lat), len(lon)) - - generator.close() diff --git a/test/models/da/test_da_sda_stormcast.py b/test/models/da/test_da_sda_stormcast.py deleted file mode 100644 index b6b54b9f2..000000000 --- a/test/models/da/test_da_sda_stormcast.py +++ /dev/null @@ -1,537 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -from collections import OrderedDict -from unittest.mock import patch - -import numpy as np -import pandas as pd -import pytest -import torch -import xarray as xr - -from earth2studio.data import Random, RandomDataFrame, fetch_data, fetch_dataframe -from earth2studio.models.da.sda_stormcast import StormCastSDA - -try: - import cupy as cp -except ImportError: - cp = None - - -# ---------- Mock neural networks ---------- - - -class PhooRegressionModel(torch.nn.Module): - def __init__(self, out_vars=3): - super().__init__() - self.out_vars = out_vars - - def forward(self, x): - return x[:, : self.out_vars, :, :] - - -class PhooSDADiffusionModel(torch.nn.Module): - def forward(self, x, t, condition=None): - return x - - -# ---------- Constants ---------- - -Y_START, Y_END = 32, 128 -X_START, X_END = 32, 64 -NVAR = 3 -NVAR_COND = 5 -SAMPLER_ARGS = { - "num_steps": 2, - "sigma_min": 0.002, - "sigma_max": 88.0, - "rho": 7.0, - "S_churn": 0.0, - "S_min": 0.0, - "S_max": float("inf"), - "S_noise": 1.0, -} - - -# ---------- Helpers ---------- - - -def _build_model(device="cpu"): - regression = PhooRegressionModel(out_vars=NVAR) - diffusion = PhooSDADiffusionModel() - - r_condition = Random( - OrderedDict( - [ - ("lat", np.linspace(90, -90, num=181, endpoint=True)), - ("lon", np.linspace(0, 360, num=360)), - ] - ) - ) - - ny = Y_END - Y_START - nx = X_END - X_START - variables = np.array(["u%02d" % i for i in range(NVAR)]) - means = torch.zeros(1, NVAR, 1, 1) - stds = torch.ones(1, NVAR, 1, 1) - invariants = torch.randn(1, 2, ny, nx) - conditioning_means = torch.randn(1, NVAR_COND, 1, 1) - conditioning_stds = torch.randn(1, NVAR_COND, 1, 1).abs() + 0.1 - conditioning_variables = np.array(["c%02d" % i for i in range(NVAR_COND)]) - - return StormCastSDA( - regression, - diffusion, - means, - stds, - invariants, - hrrr_lat_lim=(Y_START, Y_END), - hrrr_lon_lim=(X_START, X_END), - variables=variables, - conditioning_means=conditioning_means, - conditioning_stds=conditioning_stds, - conditioning_variables=conditioning_variables, - conditioning_data_source=r_condition, - sampler_args=SAMPLER_ARGS, - ).to(device) - - -def _build_input_da(model, time, device="cpu"): - dc = OrderedDict([("hrrr_y", model.hrrr_y), ("hrrr_x", model.hrrr_x)]) - r = Random(dc) - x = fetch_data( - r, - time, - model.variables, - lead_time=np.array([np.timedelta64(0, "h")]), - device=device, - legacy=False, - ) - return x.assign_coords( - lat=(["hrrr_y", "hrrr_x"], model.lat), - lon=(["hrrr_y", "hrrr_x"], model.lon), - ) - - -def _build_obs_source(model, n_obs=10): - grid_lat, grid_lon = model.lat, model.lon - _state: dict = {} - - def lat_gen(): - y = np.random.randint(5, grid_lat.shape[0] - 5) - x = np.random.randint(5, grid_lat.shape[1] - 5) - _state["y"], _state["x"] = y, x - return float(grid_lat[y, x]) - - def lon_gen(): - return float(grid_lon[_state["y"], _state["x"]]) - - return RandomDataFrame( - n_obs=n_obs, - field_generators={"lat": lat_gen, "lon": lon_gen}, - ) - - -def _mock_forward(x, conditioning, y_obs, mask): - return torch.zeros_like(x) - - -# ---------- Unit tests: _points_in_polygon ---------- - - -def test_points_in_polygon_square(): - polygon = np.array([[0, 0], [0, 1], [1, 1], [1, 0]], dtype=np.float64) - inside = np.array([[0.5, 0.5], [0.1, 0.1], [0.9, 0.9]], dtype=np.float64) - outside = np.array([[-1, -1], [2, 2], [0.5, 1.5]], dtype=np.float64) - points = np.vstack([inside, outside]) - - result = StormCastSDA._points_in_polygon(points, polygon) - - assert result[:3].all() - assert not result[3:].any() - - -def test_points_in_polygon_triangle(): - polygon = np.array([[0, 0], [2, 0], [1, 2]], dtype=np.float64) - inside = np.array([[1, 0.5]], dtype=np.float64) - outside = np.array([[3, 3], [-1, 0]], dtype=np.float64) - points = np.vstack([inside, outside]) - - result = StormCastSDA._points_in_polygon(points, polygon) - - assert result[0] - assert not result[1:].any() - - -# ---------- Unit tests: _build_obs_tensors ---------- - - -@pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], -) -def test_build_obs_tensors(device): - model = _build_model(device=device) - time = np.array([np.datetime64("2020-01-01T00:00")]) - obs_source = _build_obs_source(model, n_obs=5) - obs_df = fetch_dataframe(obs_source, time, model.variables[:2]) - ny, nx = model.lat.shape - - y_obs, mask = model._build_obs_tensors(obs_df, time[0], model.device) - - assert y_obs.shape == (1, NVAR, ny, nx) - assert mask.shape == (1, NVAR, ny, nx) - assert mask.sum() > 0 - assert y_obs.device == model.device - assert mask.device == model.device - - -def test_build_obs_tensors_none(): - model = _build_model() - time = np.array([np.datetime64("2020-01-01T00:00")]) - ny, nx = model.lat.shape - - y_obs, mask = model._build_obs_tensors(None, time[0], model.device) - - assert y_obs.shape == (1, NVAR, ny, nx) - assert (mask == 0).all() - assert (y_obs == 0).all() - - -def test_build_obs_tensors_outside_grid(): - model = _build_model() - time = np.array([np.datetime64("2020-01-01T00:00")]) - - # RandomDataFrame with lat/lon fixed far outside the HRRR grid - obs_source = RandomDataFrame( - n_obs=5, - field_generators={ - "lat": lambda: 0.0, - "lon": lambda: 10.0, - }, - ) - obs_df = fetch_dataframe(obs_source, time, [str(model.variables[0])]) - - y_obs, mask = model._build_obs_tensors(obs_df, time[0], model.device) - - assert (mask == 0).all() - - -def test_build_obs_tensors_averages_duplicates(): - model = _build_model() - time = np.array([np.datetime64("2020-01-01T00:00")]) - ny, nx = model.lat.shape - - mid_y, mid_x = ny // 2, nx // 2 - pt_lat = float(model.lat[mid_y, mid_x]) - pt_lon = float(model.lon[mid_y, mid_x]) - var_name = str(model.variables[0]) - - # Three observations at the exact same location and variable - obs_df = pd.DataFrame( - { - "time": pd.to_datetime([time[0]] * 3), - "lat": [pt_lat] * 3, - "lon": [pt_lon] * 3, - "variable": [var_name] * 3, - "observation": [3.0, 9.0, 30.0], - } - ) - - y_obs, mask = model._build_obs_tensors(obs_df, time[0], model.device) - - assert mask.sum() == 1 - assert torch.isclose(y_obs[mask == 1], torch.tensor(14.0)).all() - - obs_df = pd.DataFrame( - { - "time": pd.to_datetime([time[0]] * 3), - "lat": [0, pt_lat, pt_lat], - "lon": [0, pt_lon, pt_lon], - "variable": [var_name] * 3, - "observation": [3.0, 9.0, 30.0], - } - ) - - y_obs, mask = model._build_obs_tensors(obs_df, time[0], model.device) - assert mask.sum() == 1 - assert torch.isclose(y_obs[mask == 1], torch.tensor(19.5)).all() - - -# ---------- Unit test: _fetch_and_interp_conditioning ---------- - - -def test_fetch_and_interp_conditioning(): - model = _build_model(device="cpu") - time = np.array([np.datetime64("2020-01-01T00:00")]) - x = _build_input_da(model, time, device="cpu") - ny, nx = model.lat.shape - - c = model._fetch_and_interp_conditioning(x) - - assert c.shape == (1, 1, NVAR_COND, ny, nx) - assert "hrrr_y" in c.dims - assert "hrrr_x" in c.dims - assert "variable" in c.dims - - -@pytest.mark.skipif(not torch.cuda.is_available(), reason="cuda missing") -def test_fetch_and_interp_conditioning_gpu(): - from scipy.interpolate import RegularGridInterpolator - - from earth2studio.data.utils import prep_data_inputs - - # Descending latitude (typical weather data convention: 90 → -90) - src_lat = np.linspace(90, -90, num=181) - src_lon = np.linspace(0, 360, num=361) - field = np.random.randn(src_lat.shape[0], src_lon.shape[0]) - - class _AnalyticSource: - def __init__(self): - self.domain_coords = OrderedDict([("lat", src_lat), ("lon", src_lon)]) - - def __call__(self, time, variable): - time, variable = prep_data_inputs(time, variable) - data = np.broadcast_to( - field, (len(time), len(variable), len(src_lat), len(src_lon)) - ).copy() - return xr.DataArray( - data=data, - dims=["time", "variable", "lat", "lon"], - coords={ - "time": time, - "variable": variable, - "lat": src_lat, - "lon": src_lon, - }, - ) - - ny = Y_END - Y_START - nx = X_END - X_START - model = StormCastSDA( - PhooRegressionModel(out_vars=NVAR), - PhooSDADiffusionModel(), - torch.zeros(1, NVAR, 1, 1), - torch.ones(1, NVAR, 1, 1), - torch.randn(1, 2, ny, nx), - hrrr_lat_lim=(Y_START, Y_END), - hrrr_lon_lim=(X_START, X_END), - variables=np.array(["u%02d" % i for i in range(NVAR)]), - conditioning_means=torch.zeros(1, NVAR_COND, 1, 1), - conditioning_stds=torch.ones(1, NVAR_COND, 1, 1), - conditioning_variables=np.array(["c%02d" % i for i in range(NVAR_COND)]), - conditioning_data_source=_AnalyticSource(), - sampler_args=SAMPLER_ARGS, - ).to("cuda:0") - - time = np.array([np.datetime64("2020-01-01T00:00")]) - x = _build_input_da(model, time, device="cuda:0") - c = model._fetch_and_interp_conditioning(x) - - # Scipy reference bilinear interpolation - ref = RegularGridInterpolator((src_lat, src_lon), field, method="linear") - target_pts = np.column_stack([model.lat.ravel(), model.lon.ravel()]) - expected = ref(target_pts).reshape(ny, nx) - - c_np = c.data.get() - for v in range(NVAR_COND): - np.testing.assert_allclose(c_np[0, 0, v], expected, atol=1e-6, rtol=0) - - -# ---------- Test: __call__ ---------- - - -@pytest.mark.parametrize( - "time", - [ - np.array([np.datetime64("2020-04-05T00:00")]), - np.array( - [np.datetime64("2020-10-11T12:00"), np.datetime64("2020-06-04T00:00")] - ), - ], -) -@pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], -) -def test_stormcast_sda_call(time, device): - model = _build_model(device=device) - x = _build_input_da(model, time, device=device) - obs_source = _build_obs_source(model, n_obs=10) - obs_df = fetch_dataframe(obs_source, time, model.variables[:2]) - ny, nx = model.lat.shape - - with patch.object(model, "_forward", _mock_forward): - out = model(x, obs_df) - - assert out.shape == (len(time), 1, NVAR, ny, nx) - assert set(out.dims) == {"time", "lead_time", "variable", "hrrr_y", "hrrr_x"} - assert np.all(out.coords["time"].values == time) - assert out.coords["lead_time"].values[0] == np.timedelta64(1, "h") - - # Without observations - with patch.object(model, "_forward", _mock_forward): - out_none = model(x, None) - - assert out_none.shape == out.shape - - -# ---------- Test: create_generator ---------- - - -@pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], -) -def test_stormcast_sda_generator(device): - model = _build_model(device=device) - time = np.array([np.datetime64("2020-04-05T00:00")]) - x = _build_input_da(model, time, device=device) - obs_source = _build_obs_source(model, n_obs=10) - obs_df = fetch_dataframe(obs_source, time, model.variables[:2]) - ny, nx = model.lat.shape - - with patch.object(model, "_forward", _mock_forward): - gen = model.create_generator(x) - - # First yield returns initial state - state = next(gen) - assert state.shape == x.shape - - # Send observations, receive next forecast - state = gen.send(obs_df) - assert state.shape == (len(time), 1, NVAR, ny, nx) - assert state.coords["lead_time"].values[0] == np.timedelta64(1, "h") - - # Send None (no observations), receive next forecast - state = gen.send(None) - assert state.shape == (len(time), 1, NVAR, ny, nx) - assert state.coords["lead_time"].values[0] == np.timedelta64(2, "h") - - gen.close() - - -# ---------- Test: exceptions ---------- - - -def test_stormcast_sda_exceptions(): - ny = Y_END - Y_START - nx = X_END - X_START - regression = PhooRegressionModel(out_vars=NVAR) - diffusion = PhooSDADiffusionModel() - means = torch.zeros(1, NVAR, 1, 1) - stds = torch.ones(1, NVAR, 1, 1) - invariants = torch.randn(1, 2, ny, nx) - - # No conditioning_data_source - model = StormCastSDA( - regression, - diffusion, - means, - stds, - invariants, - hrrr_lat_lim=(Y_START, Y_END), - hrrr_lon_lim=(X_START, X_END), - ) - - time = np.array([np.datetime64("2020-01-01T00:00")]) - x = _build_input_da(model, time) - - with pytest.raises(RuntimeError): - model(x, None) - - gen = model.create_generator(x) - with pytest.raises(RuntimeError): - next(gen) - - -# ---------- Test: package loading ---------- - - -@pytest.fixture(scope="function") -def sda_model() -> StormCastSDA: - package = StormCastSDA.load_default_package() - return StormCastSDA.load_model(package) - - -@pytest.mark.package -@pytest.mark.parametrize("device", ["cuda:0"]) -def test_stormcast_sda_package(device, sda_model): - torch.cuda.empty_cache() - time = np.array([np.datetime64("2020-04-05T00:00")]) - - model = sda_model.to(device) - - # Set up Random conditioning source to avoid external data fetches - r_condition = Random( - OrderedDict( - [ - ("lat", np.linspace(90, -90, num=721, endpoint=True)), - ("lon", np.linspace(0, 360, num=1440)), - ] - ) - ) - model.conditioning_data_source = r_condition - model.sampler_args = SAMPLER_ARGS - - # Build input from Random source matching model init_coords - ic = model.init_coords()[0] - dc = OrderedDict([("hrrr_y", ic["hrrr_y"]), ("hrrr_x", ic["hrrr_x"])]) - r = Random(dc) - x = fetch_data( - r, - time, - ic["variable"], - lead_time=np.array([np.timedelta64(0, "h")]), - device=device, - legacy=False, - ) - x = x.assign_coords( - lat=(["hrrr_y", "hrrr_x"], model.lat), - lon=(["hrrr_y", "hrrr_x"], model.lon), - ) - - out = model(x, None) - - assert out.shape == (1, 1, 99, 512, 640) - assert set(out.dims) == {"time", "lead_time", "variable", "hrrr_y", "hrrr_x"} - assert np.all(out.coords["time"].values == time) - assert out.coords["lead_time"].values[0] == np.timedelta64(1, "h") diff --git a/test/models/da/test_utils.py b/test/models/da/test_utils.py deleted file mode 100644 index 10cd95d57..000000000 --- a/test/models/da/test_utils.py +++ /dev/null @@ -1,204 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -from datetime import datetime - -import numpy as np -import pandas as pd -import pytest -import torch - -try: - import cudf -except ImportError: - cudf = None - -from earth2studio.models.da.utils import ( - dfseries_to_torch, - filter_time_range, - validate_observation_fields, -) - - -@pytest.fixture -def sample_pandas_df(): - """Create a sample pandas DataFrame for testing.""" - return pd.DataFrame( - { - "time": pd.to_datetime( - [ - "2024-01-01T10:00:00", - "2024-01-01T11:00:00", - "2024-01-01T12:00:00", - "2024-01-01T13:00:00", - ] - ), - "lat": [30.0, 31.0, 32.0, 33.0], - "lon": [240.0, 241.0, 242.0, 243.0], - "observation": [10.0, 20.0, 30.0, 40.0], - "variable": ["t2m", "t2m", "u10m", "u10m"], - } - ) - - -@pytest.fixture -def sample_cudf_df(): - """Create a sample cudf DataFrame for testing.""" - if cudf is None: - pytest.skip("cudf not available") - return cudf.DataFrame( - { - "time": pd.to_datetime( - [ - "2024-01-01T10:00:00", - "2024-01-01T11:00:00", - "2024-01-01T12:00:00", - "2024-01-01T13:00:00", - ] - ), - "lat": [30.0, 31.0, 32.0, 33.0], - "lon": [240.0, 241.0, 242.0, 243.0], - "observation": [10.0, 20.0, 30.0, 40.0], - "variable": ["t2m", "t2m", "u10m", "u10m"], - } - ) - - -def test_validate_observation_fields(sample_pandas_df): - validate_observation_fields(sample_pandas_df, ["time", "lat", "lon"]) - validate_observation_fields( - sample_pandas_df, ["time", "lat", "lon", "observation", "variable"] - ) - validate_observation_fields(sample_pandas_df, ["time"]) - - with pytest.raises(ValueError, match="DataFrame missing required fields"): - validate_observation_fields(sample_pandas_df, ["time", "missing_field"]) - - with pytest.raises(ValueError, match="DataFrame missing required fields"): - validate_observation_fields( - sample_pandas_df, ["time", "missing_field1", "missing_field2"] - ) - - -class TestFilterTimeRange: - @pytest.mark.parametrize( - "request_time", - [ - np.datetime64("2024-01-01T12:00:00"), - datetime(2024, 1, 1, 12, 0, 0), - "2024-01-01T12:00:00", - ], - ) - def test_filter_time_range_pandas(self, sample_pandas_df, request_time): - tolerance = (np.timedelta64(-30, "m"), np.timedelta64(30, "m")) - result = filter_time_range(sample_pandas_df, request_time, tolerance) - - assert isinstance(result, pd.DataFrame) - assert len(result) == 1 - assert result.iloc[0]["time"] == pd.Timestamp(request_time) - - @pytest.mark.parametrize( - "request_time", - [ - np.datetime64("2024-01-01T12:00:00"), - datetime(2024, 1, 1, 12, 0, 0), - "2024-01-01T12:00:00", - ], - ) - def test_filter_time_range_cudf(self, sample_cudf_df, request_time): - if cudf is None: - pytest.skip("cudf not available") - tolerance = (np.timedelta64(-30, "m"), np.timedelta64(30, "m")) - result = filter_time_range(sample_cudf_df, request_time, tolerance) - - assert isinstance(result, cudf.DataFrame) - assert len(result) == 1 - assert (result.iloc[0]["time"] == pd.Timestamp(request_time)).all() - - def test_filter_time_range_tolerance_window(self, sample_pandas_df): - request_time = np.datetime64("2024-01-01T11:30:00") - tolerance = (np.timedelta64(-30, "m"), np.timedelta64(30, "m")) - result = filter_time_range(sample_pandas_df, request_time, tolerance) - assert len(result) == 2 - - tolerance = (np.timedelta64(-2, "h"), np.timedelta64(2, "h")) - result = filter_time_range(sample_pandas_df, request_time, tolerance) - assert len(result) >= 2 - - request_time = np.datetime64("2024-01-01T20:00:00") - tolerance = (np.timedelta64(-1, "h"), np.timedelta64(1, "h")) - result = filter_time_range(sample_pandas_df, request_time, tolerance) - assert len(result) == 0 - - def test_filter_time_range_custom_column(self, sample_pandas_df): - df = sample_pandas_df.rename(columns={"time": "timestamp"}) - request_time = np.datetime64("2024-01-01T12:00:00") - tolerance = (np.timedelta64(-1, "h"), np.timedelta64(1, "h")) - result = filter_time_range(df, request_time, tolerance, time_column="timestamp") - assert len(result) == 3 - - -class TestDfseriesToTorch: - @pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], - ) - def test_dfseries_to_torch_pandas_cpu(self, sample_pandas_df, device): - if device != "cpu" and not torch.cuda.is_available(): - pytest.skip("CUDA not available") - series = sample_pandas_df["lat"] - tensor = dfseries_to_torch(series, dtype=torch.float32, device=device) - - assert isinstance(tensor, torch.Tensor) - assert tensor.dtype == torch.float32 - assert tensor.device.type == device.split(":")[0] if ":" in device else device - assert len(tensor) == len(series) - assert torch.allclose( - tensor, torch.tensor(series.values, dtype=torch.float32, device=device) - ) - - @pytest.mark.parametrize( - "device", - [ - "cpu", - pytest.param( - "cuda:0", - marks=pytest.mark.skipif( - not torch.cuda.is_available(), reason="cuda missing" - ), - ), - ], - ) - def test_dfseries_to_torch_cudf(self, sample_cudf_df, device): - if cudf is None: - pytest.skip("cudf not available") - if device != "cpu" and not torch.cuda.is_available(): - pytest.skip("CUDA not available") - series = sample_cudf_df["lat"] - tensor = dfseries_to_torch(series, dtype=torch.float32, device=device) - - assert isinstance(tensor, torch.Tensor) - assert tensor.dtype == torch.float32 - assert tensor.device.type == device.split(":")[0] if ":" in device else device - assert len(tensor) == len(series) diff --git a/test/models/px/test_ace2.py b/test/models/px/test_ace2.py index 67509420b..ac1c6325a 100644 --- a/test/models/px/test_ace2.py +++ b/test/models/px/test_ace2.py @@ -29,8 +29,6 @@ ) from earth2studio.utils import handshake_dim -pytest.importorskip("fme") - class PhooOutput: prediction: dict = {} diff --git a/test/models/px/test_aurora.py b/test/models/px/test_aurora.py index ae90f7829..748c45e8c 100644 --- a/test/models/px/test_aurora.py +++ b/test/models/px/test_aurora.py @@ -20,11 +20,7 @@ import numpy as np import pytest import torch - -try: - from aurora import Batch, Metadata -except ImportError: - pytest.importorskip("aurora") +from aurora import Batch, Metadata from earth2studio.data import Random, fetch_data from earth2studio.models.px import Aurora diff --git a/test/models/px/test_dxwrapper.py b/test/models/px/test_dxwrapper.py index 5152e93ab..75c080ecf 100644 --- a/test/models/px/test_dxwrapper.py +++ b/test/models/px/test_dxwrapper.py @@ -117,7 +117,6 @@ def round_sigma(self, sigma): return torch.as_tensor(sigma) -@pytest.mark.skip(reason="FCN3 test for dx wrapper is slow") @pytest.mark.parametrize("device", ["cuda:0"]) # Removing CPU here too slow atm "cpu", @pytest.mark.parametrize("model_type", ["precip", "solar"]) @pytest.mark.parametrize( diff --git a/test/models/px/test_fcn.py b/test/models/px/test_fcn.py index 10bf64f12..eb9e375fa 100644 --- a/test/models/px/test_fcn.py +++ b/test/models/px/test_fcn.py @@ -165,6 +165,7 @@ def model() -> FCN: return p +@pytest.mark.xfail(reason="package missing on ngc") @pytest.mark.package @pytest.mark.parametrize("device", ["cuda:0"]) def test_fcn_package(model, device): diff --git a/test/models/px/test_graphcast.py b/test/models/px/test_graphcast.py index f174767af..98a9a07ea 100644 --- a/test/models/px/test_graphcast.py +++ b/test/models/px/test_graphcast.py @@ -22,11 +22,7 @@ import pytest import torch import xarray as xr - -try: - from graphcast import graphcast -except ImportError: - pytest.importorskip("graphcast") +from graphcast import graphcast from earth2studio.data import Random, fetch_data from earth2studio.models.px.graphcast_operational import GraphCastOperational @@ -131,8 +127,8 @@ def __init__(self, model_config, task_config): [ np.array([np.datetime64("1993-04-05T00:00")]), np.array( - [np.datetime64("1993-04-05T00:00"), np.datetime64("2001-06-04T00:00")] - ), + [np.datetime64("2001-06-04T00:00")] + ), # Only len 1 time array is supported by GraphCastSmall model ], ) @pytest.mark.parametrize("device", ["cpu", "cuda:0"]) @@ -156,6 +152,9 @@ def test_graphcast_small_call(time, device, mock_GraphCastSmall_model): out, out_coords = p(x, coords) + if not isinstance(time, Iterable): + time = [time] + assert out.shape == torch.Size([len(time), 1, 83, 181, 360]) assert (out_coords["variable"] == p.output_coords(coords)["variable"]).all() assert (out_coords["time"] == time).all() @@ -347,18 +346,9 @@ def __init__(self, model_config, task_config): return p -@pytest.mark.parametrize( - "time", - [ - np.array([np.datetime64("2010-01-01T00:00")]), - np.array( - [np.datetime64("2010-01-01T00:00"), np.datetime64("2010-01-02T00:00")] - ), - ], -) @pytest.mark.parametrize("device", ["cpu", "cuda:0"]) @mock.patch("graphcast.rollout.chunked_prediction", mocked_chunked_prediction) -def test_graphcast_operational_call(time, device, mock_GraphCastOperational_model): +def test_graphcast_operational_call(device, mock_GraphCastOperational_model): p = mock_GraphCastOperational_model.to(device) @@ -372,11 +362,12 @@ def test_graphcast_operational_call(time, device, mock_GraphCastOperational_mode r = Random(dc) # Get Data and convert to tensor, coords + time = np.array([np.datetime64("2010-01-01T00:00")]) lead_time = p.input_coords()["lead_time"] variable = p.input_coords()["variable"] x, coords = fetch_data(r, time, variable, lead_time, device=device) out, out_coords = p(x, coords) - assert out.shape == torch.Size([len(time), 1, 83, 721, 1440]) + assert out.shape == (1, 1, 83, 721, 1440) assert (out_coords["variable"] == p.output_coords(coords)["variable"]).all() assert (out_coords["time"] == time).all() handshake_dim(out_coords, "lon", 4) diff --git a/test/serve/client/conftest.py b/test/serve/client/conftest.py deleted file mode 100644 index 2bd76cb79..000000000 --- a/test/serve/client/conftest.py +++ /dev/null @@ -1,135 +0,0 @@ -#!/usr/bin/env python3 -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -import os -from collections.abc import Iterator -from typing import Any - -import pytest - -# earth2studio.serve.client is importable because uv adds the repository -# root to sys.path when running: uv run -m pytest test/serve/client - -# ============================================================================= -# Pytest Configuration -# ============================================================================= - - -def pytest_configure(config: Any) -> None: - """Configure pytest with custom markers.""" - config.addinivalue_line( - "markers", - "integration: mark test as an integration test requiring API server", - ) - - -# ============================================================================= -# Integration Test Fixtures -# ============================================================================= - - -@pytest.fixture(scope="session") -def api_url() -> str | None: - """ - Get API URL from environment for integration tests. - - Returns None if not set (integration tests will be skipped). - """ - return os.getenv("EARTH2STUDIO_API_URL") - - -@pytest.fixture(scope="session") -def check_api_availability(api_url: str | None) -> Iterator[str]: - """ - Check if API is available before running integration tests. - - This fixture should be used by integration tests to ensure - the API server is running and accessible. - """ - if not api_url: - pytest.skip( - "EARTH2STUDIO_API_URL environment variable not set. " - "Set it to run integration tests: export EARTH2STUDIO_API_URL=http://localhost:8000" - ) - - # Verify API is reachable - try: - import requests # type: ignore[import-untyped] - - response = requests.get(f"{api_url}/health", timeout=10) - if response.status_code != 200: - pytest.skip(f"API health check failed: {response.status_code}") - except Exception as e: - pytest.skip(f"Cannot connect to API at {api_url}: {e}") - - assert api_url is not None # narrow type for mypy after skip - yield api_url - - -# ============================================================================= -# Unit Test Mock Fixtures -# ============================================================================= - - -@pytest.fixture -def mock_health_response() -> dict[str, Any]: - """Fixture providing a mock health check response""" - return { - "status": "healthy", - "timestamp": "2024-01-01T00:00:00+00:00", - } - - -@pytest.fixture -def mock_inference_response() -> dict[str, Any]: - """Fixture providing a mock inference request response""" - return { - "execution_id": "exec_test_123", - "status": "accepted", - "message": "Request accepted for processing", - "timestamp": "2024-01-01T00:00:00+00:00", - } - - -@pytest.fixture -def mock_status_response() -> dict[str, Any]: - """Fixture providing a mock status response""" - return { - "execution_id": "exec_test_123", - "status": "running", - "progress": { - "progress": "Processing step 5 of 10", - "current_step": 5, - "total_steps": 10, - }, - "error_message": None, - } - - -@pytest.fixture -def mock_results_response() -> dict[str, Any]: - """Fixture providing a mock results response""" - return { - "request_id": "exec_test_123", - "status": "completed", - "output_files": [ - {"path": "output.zarr", "size": 1024000}, - {"path": "metadata.json", "size": 512}, - ], - "completion_time": "2024-01-01T00:10:00+00:00", - "execution_time_seconds": 600.0, - } diff --git a/test/serve/client/test_client.py b/test/serve/client/test_client.py deleted file mode 100644 index e55ed30fa..000000000 --- a/test/serve/client/test_client.py +++ /dev/null @@ -1,444 +0,0 @@ -#!/usr/bin/env python3 -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -import io -import json -from datetime import datetime -from unittest.mock import Mock, patch - -import pytest -import requests # type: ignore[import-untyped] - -from earth2studio.serve.client.client import Earth2StudioClient -from earth2studio.serve.client.exceptions import ( - APIConnectionError as ClientConnectionError, -) -from earth2studio.serve.client.exceptions import ( - BadRequestError, - Earth2StudioAPIError, - InferenceRequestNotFoundError, - InternalServerError, - RequestTimeoutError, -) -from earth2studio.serve.client.models import ( - HealthStatus, - InferenceRequest, - InferenceRequestResponse, - InferenceRequestResults, - InferenceRequestStatus, - OutputFile, - RequestStatus, -) - - -class TestEarth2StudioClientInitialization: - """Test Earth2StudioClient initialization""" - - def test_client_initialization(self) -> None: - """Test client initialization with default and custom parameters""" - # Test defaults - client = Earth2StudioClient() - assert client.base_url == "http://localhost:8000" - assert client.workflow_name == "deterministic_earth2_workflow" - assert client.timeout == 30.0 - assert client.session is not None - - # Test custom params and trailing slash stripping - client = Earth2StudioClient( - base_url="https://api.example.com:8080/", - workflow_name="custom_workflow", - timeout=60.0, - ) - assert client.base_url == "https://api.example.com:8080" - assert client.workflow_name == "custom_workflow" - assert client.timeout == 60.0 - - -class TestEarth2StudioClientHealthCheck: - """Test health_check method""" - - def test_health_check(self) -> None: - """Test health check success and error handling""" - client = Earth2StudioClient() - - # Test success - mock_response = { - "status": "healthy", - "timestamp": "2024-01-01T00:00:00+00:00", - } - with patch.object(client, "_make_request", return_value=mock_response): - health = client.health_check() - assert isinstance(health, HealthStatus) - assert health.status == "healthy" - - # Test error - with patch.object( - client, "_make_request", side_effect=Earth2StudioAPIError("API error") - ): - with pytest.raises(Earth2StudioAPIError, match="API error"): - client.health_check() - - -class TestEarth2StudioClientInferenceRequest: - """Test submit_inference_request method""" - - def test_submit_inference_request(self) -> None: - """Test inference request submission with success and error cases""" - client = Earth2StudioClient() - request = InferenceRequest( - parameters={"forecast_times": ["2024-01-01T00:00:00"]} - ) - - # Test success - mock_response = { - "execution_id": "exec_123", - "status": "accepted", - "message": "Request accepted", - "timestamp": "2024-01-01T00:00:00+00:00", - } - with patch.object(client, "_make_request", return_value=mock_response): - response = client.submit_inference_request(request) - assert isinstance(response, InferenceRequestResponse) - assert response.execution_id == "exec_123" - assert response.status == RequestStatus.ACCEPTED - - # Test bad request error - with patch.object( - client, - "_make_request", - side_effect=BadRequestError("Invalid parameters"), - ): - with pytest.raises(BadRequestError, match="Invalid parameters"): - client.submit_inference_request(request) - - -class TestEarth2StudioClientGetRequestStatus: - """Test get_request_status method""" - - def test_get_request_status(self) -> None: - """Test status retrieval for various states""" - client = Earth2StudioClient() - - # Test running status with progress - mock_response = { - "execution_id": "exec_123", - "status": "running", - "progress": { - "progress": "Processing step 5 of 10", - "current_step": 5, - "total_steps": 10, - }, - "error_message": None, - } - with patch.object(client, "_make_request", return_value=mock_response): - status = client.get_request_status("exec_123") - assert isinstance(status, InferenceRequestStatus) - assert status.status == RequestStatus.RUNNING - assert status.progress.current_step == 5 - - # Test failed status - mock_response["status"] = "failed" - mock_response["error_message"] = "Data source unavailable" - mock_response["progress"] = None - with patch.object(client, "_make_request", return_value=mock_response): - status = client.get_request_status("exec_123") - assert status.status == RequestStatus.FAILED - assert status.error_message == "Data source unavailable" - - # Test not found - with patch.object( - client, - "_make_request", - side_effect=InferenceRequestNotFoundError("Request not found"), - ): - with pytest.raises(InferenceRequestNotFoundError): - client.get_request_status("nonexistent_id") - - -class TestEarth2StudioClientGetRequestResults: - """Test get_request_results method""" - - def test_get_request_results(self) -> None: - """Test results retrieval in various scenarios""" - client = Earth2StudioClient() - - # Test successful results - mock_response_data = { - "request_id": "exec_123", - "status": "completed", - "output_files": [ - {"path": "output.zarr", "size": 1024}, - {"path": "metadata.json", "size": 256}, - ], - "completion_time": "2024-01-01T00:10:00+00:00", - "execution_time_seconds": 600.0, - } - mock_http_response = Mock() - mock_http_response.status_code = 200 - mock_http_response.json.return_value = mock_response_data - - with patch.object(client, "_make_request", return_value=mock_http_response): - results = client.get_request_results("exec_123") - assert isinstance(results, InferenceRequestResults) - assert results.status == RequestStatus.COMPLETED - assert len(results.output_files) == 2 - - # Test still processing (202) - mock_http_response.status_code = 202 - mock_http_response.json.return_value = {"message": "Still processing"} - with patch.object(client, "_make_request", return_value=mock_http_response): - with pytest.raises(Earth2StudioAPIError, match="[Ss]till processing"): - client.get_request_results("exec_123") - - # Test custom timeout - mock_http_response.status_code = 200 - mock_http_response.json.return_value = mock_response_data - with patch.object( - client, "_make_request", return_value=mock_http_response - ) as mock_req: - client.get_request_results("exec_123", timeout=120.0) - assert mock_req.call_args[1]["timeout"] == 120.0 - - -class TestEarth2StudioClientWaitForCompletion: - """Test wait_for_completion method""" - - def test_wait_for_completion(self) -> None: - """Test waiting for completion with various outcomes""" - client = Earth2StudioClient() - - # Test success after polling - status_responses = [ - InferenceRequestStatus( - execution_id="exec_123", - status=RequestStatus.RUNNING, - progress=None, - error_message=None, - ), - InferenceRequestStatus( - execution_id="exec_123", - status=RequestStatus.COMPLETED, - progress=None, - error_message=None, - ), - ] - mock_results = InferenceRequestResults( - request_id="exec_123", - status=RequestStatus.COMPLETED, - output_files=[], - completion_time=datetime.now(), - ) - with ( - patch.object(client, "get_request_status", side_effect=status_responses), - patch.object(client, "get_request_results", return_value=mock_results), - patch("time.sleep"), - ): - results = client.wait_for_completion("exec_123", poll_interval=1.0) - assert results.status == RequestStatus.COMPLETED - - # Test timeout - status_response = InferenceRequestStatus( - execution_id="exec_123", - status=RequestStatus.RUNNING, - progress=None, - error_message=None, - ) - with ( - patch.object(client, "get_request_status", return_value=status_response), - patch("time.sleep"), - patch("time.time", side_effect=[0, 0, 5, 11]), - ): - with pytest.raises(RequestTimeoutError, match="did not complete within"): - client.wait_for_completion("exec_123", poll_interval=1.0, timeout=10.0) - - # Test failed request - status_response.status = RequestStatus.FAILED - status_response.error_message = "Data source error" - with patch.object(client, "get_request_status", return_value=status_response): - with pytest.raises(Earth2StudioAPIError, match="failed"): - client.wait_for_completion("exec_123") - - # Test cancelled request - status_response.status = RequestStatus.CANCELLED - with patch.object(client, "get_request_status", return_value=status_response): - with pytest.raises(Earth2StudioAPIError, match="was cancelled"): - client.wait_for_completion("exec_123") - - -class TestEarth2StudioClientDownloadResult: - """Test download_result and related methods""" - - def test_download_result(self) -> None: - """Test downloading result files with custom timeout""" - client = Earth2StudioClient(workflow_name="test_workflow") - - result = InferenceRequestResults( - request_id="exec_123", - status=RequestStatus.COMPLETED, - output_files=[OutputFile(path="output.zarr", size=1024)], - completion_time=datetime.now(), - ) - - # Test result_root_path - path = client.result_root_path(result) - assert path == "/v1/infer/test_workflow/exec_123/results/" - - # Test download - mock_http_response = Mock() - mock_http_response.content = b"mock file content" - - with patch.object( - client, "_make_request", return_value=mock_http_response - ) as mock_req: - data = client.download_result(result, "output.zarr", timeout=300.0) - assert isinstance(data, io.BytesIO) - assert data.read() == b"mock file content" - assert mock_req.call_args[1]["timeout"] == 300.0 - - -class TestEarth2StudioClientMakeRequest: - """Test _make_request method""" - - def test_make_request_success_and_errors(self) -> None: - """Test HTTP request handling for various scenarios""" - client = Earth2StudioClient() - - # Test successful request - mock_response = Mock() - mock_response.ok = True - mock_response.status_code = 200 - mock_response.json.return_value = {"result": "success"} - with patch.object(client.session, "request", return_value=mock_response): - result = client._make_request("GET", "/test") - assert result == {"result": "success"} - - # Test timeout - with patch.object( - client.session, "request", side_effect=requests.exceptions.Timeout() - ): - with pytest.raises(RequestTimeoutError, match="timed out"): - client._make_request("GET", "/test") - - # Test connection error - with patch.object( - client.session, - "request", - side_effect=requests.exceptions.ConnectionError("Connection failed"), - ): - with pytest.raises(ClientConnectionError, match="Failed to connect"): - client._make_request("GET", "/test") - - def test_make_request_http_errors(self) -> None: - """Test HTTP error status code handling""" - client = Earth2StudioClient() - - # Test 400 Bad Request - mock_response = Mock() - mock_response.ok = False - mock_response.status_code = 400 - mock_response.json.return_value = {"error": "Invalid parameters"} - with patch.object(client.session, "request", return_value=mock_response): - with pytest.raises(BadRequestError, match="Invalid parameters"): - client._make_request("POST", "/test") - - # Test 404 Not Found - mock_response.status_code = 404 - mock_response.json.return_value = {"error": "Not found"} - with patch.object(client.session, "request", return_value=mock_response): - with pytest.raises(InferenceRequestNotFoundError, match="Not found"): - client._make_request("GET", "/test") - - # Test 500 Internal Server Error - mock_response.status_code = 500 - mock_response.json.return_value = {"error": "Internal server error"} - with patch.object(client.session, "request", return_value=mock_response): - with pytest.raises(InternalServerError, match="Internal server error"): - client._make_request("GET", "/test") - - # Test invalid JSON response - mock_response.ok = True - mock_response.status_code = 200 - mock_response.json.side_effect = json.JSONDecodeError("Invalid JSON", "", 0) - with patch.object(client.session, "request", return_value=mock_response): - with pytest.raises(Earth2StudioAPIError, match="Invalid JSON response"): - client._make_request("GET", "/test") - - def test_make_request_return_response_and_stream(self) -> None: - """Test returning raw response and streaming""" - client = Earth2StudioClient() - - mock_response = Mock() - mock_response.ok = True - mock_response.status_code = 200 - mock_response.content = b"streaming content" - - # Test return_response - with patch.object(client.session, "request", return_value=mock_response): - result = client._make_request("GET", "/test", return_response=True) - assert result is mock_response - - # Test stream with custom timeout - with patch.object( - client.session, "request", return_value=mock_response - ) as mock_req: - client._make_request( - "GET", "/test", return_response=True, stream=True, timeout=120.0 - ) - assert mock_req.call_args[1]["stream"] is True - assert mock_req.call_args[1]["timeout"] == 120.0 - - -class TestEarth2StudioClientContextManager: - """Test context manager protocol""" - - def test_context_manager(self) -> None: - """Test using client as context manager""" - with Earth2StudioClient() as client: - assert isinstance(client, Earth2StudioClient) - - # Test that session is closed on exit - client = Earth2StudioClient() - with patch.object(client.session, "close") as mock_close: - with client: - pass - mock_close.assert_called_once() - - -class TestEarth2StudioClientParseErrorResponse: - """Test _parse_error_response method""" - - def test_parse_error_response(self) -> None: - """Test parsing error responses with valid and invalid JSON""" - client = Earth2StudioClient() - - # Test valid JSON - mock_response = Mock() - mock_response.json.return_value = {"error": "Test error", "details": "Details"} - result = client._parse_error_response(mock_response) - assert result == {"error": "Test error", "details": "Details"} - - # Test invalid JSON with text - mock_response.status_code = 500 - mock_response.text = "Plain text error" - mock_response.json.side_effect = json.JSONDecodeError("Invalid", "", 0) - result = client._parse_error_response(mock_response) - assert result == {"error": "Plain text error"} - - # Test invalid JSON with empty text - mock_response.text = "" - result = client._parse_error_response(mock_response) - assert "HTTP 500 error" in result["error"] diff --git a/test/serve/client/test_e2client.py b/test/serve/client/test_e2client.py deleted file mode 100644 index b1a2fc368..000000000 --- a/test/serve/client/test_e2client.py +++ /dev/null @@ -1,663 +0,0 @@ -#!/usr/bin/env python3 -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -from collections import OrderedDict -from datetime import datetime -from typing import Any -from unittest.mock import MagicMock, Mock, patch - -import numpy as np -import pytest -import torch -import xarray as xr - -from earth2studio.serve.client.e2client import ( - InferenceOutputModel, - RemoteEarth2Workflow, - RemoteEarth2WorkflowResult, - _convert_time_to_lead_time, -) -from earth2studio.serve.client.exceptions import Earth2StudioAPIError -from earth2studio.serve.client.models import ( - InferenceRequestResponse, - InferenceRequestResults, - OutputFile, - RequestStatus, -) - - -class TestRemoteEarth2WorkflowInitialization: - """Test RemoteEarth2Workflow initialization""" - - def test_initialization(self) -> None: - """Test workflow initialization with various device configurations""" - with patch("earth2studio.serve.client.e2client.Earth2StudioClient"): - # Test with CUDA available - with patch("torch.cuda.is_available", return_value=True): - workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - ) - assert workflow.device == "cuda" - - # Test with CUDA unavailable - with patch("torch.cuda.is_available", return_value=False): - workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - ) - assert workflow.device == "cpu" - - # Test with custom device and xr_args - xr_args = {"chunks": {"time": 1}} - workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - device="cpu", - xr_args=xr_args, - ) - assert workflow.device == "cpu" - assert workflow.xr_args == xr_args - assert workflow.xr_args is not xr_args # Verify it's a copy - - def test_initialization_with_client_kwargs(self) -> None: - """Test workflow initialization passes kwargs to client""" - with patch( - "earth2studio.serve.client.e2client.Earth2StudioClient" - ) as mock_client_class: - RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - timeout=60.0, - max_retries=5, - ) - mock_client_class.assert_called_once_with( - base_url="http://localhost:8000", - workflow_name="test_workflow", - timeout=60.0, - max_retries=5, - ) - - -class TestRemoteEarth2WorkflowCall: - """Test RemoteEarth2Workflow __call__ method""" - - def test_call_submits_request(self) -> None: - """Test that calling workflow submits inference request with parameters""" - with patch( - "earth2studio.serve.client.e2client.Earth2StudioClient" - ) as mock_client_class: - mock_client = Mock() - mock_client_class.return_value = mock_client - - mock_response = InferenceRequestResponse( - execution_id="exec_123", - status=RequestStatus.ACCEPTED, - message="Request accepted", - timestamp=datetime.now(), - ) - mock_client.submit_inference_request.return_value = mock_response - - workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - ) - - # Call with parameters - result = workflow( - forecast_times=["2024-01-01T00:00:00"], - nsteps=20, - model="fcn", - ) - - assert isinstance(result, RemoteEarth2WorkflowResult) - assert result.execution_id == "exec_123" - - # Verify parameters were passed correctly - call_args = mock_client.submit_inference_request.call_args - request = call_args[0][0] - assert request.parameters["nsteps"] == 20 - assert request.parameters["model"] == "fcn" - - -class TestRemoteEarth2WorkflowTo: - """Test RemoteEarth2Workflow to() method""" - - def test_to_device(self) -> None: - """Test moving workflow to different devices""" - with patch("earth2studio.serve.client.e2client.Earth2StudioClient"): - workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - device="cpu", - ) - - # Test with string - result = workflow.to("cuda") - assert workflow.device == "cuda" - assert result is workflow - - # Test with torch.device - device = torch.device("cpu") - result = workflow.to(device) - assert workflow.device == device - - -class TestRemoteEarth2WorkflowResult: - """Test RemoteEarth2WorkflowResult class""" - - def test_result_caching(self) -> None: - """Test that result is cached after first retrieval""" - with patch( - "earth2studio.serve.client.e2client.Earth2StudioClient" - ) as mock_client_class: - mock_client = Mock() - mock_client_class.return_value = mock_client - - mock_inference_result = InferenceRequestResults( - request_id="exec_123", - status=RequestStatus.COMPLETED, - output_files=[], - completion_time=datetime.now(), - ) - mock_client.wait_for_completion.return_value = mock_inference_result - - workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - ) - result = RemoteEarth2WorkflowResult(workflow, "exec_123") - - # Multiple calls should use cache - result1 = result._get_result() - result2 = result._get_result() - assert result1 is result2 - mock_client.wait_for_completion.assert_called_once() - - def test_as_dataset_formats(self) -> None: - """Test as_dataset with different output formats""" - with patch( - "earth2studio.serve.client.e2client.Earth2StudioClient" - ) as mock_client_class: - mock_client = Mock() - mock_client.timeout = 30.0 # used by as_dataset for zarr_timeout - mock_client_class.return_value = mock_client - - workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - xr_args={"decode_coords": False}, - ) - - # Test Zarr format - with patch("xarray.open_zarr") as mock_open_zarr: - mock_inference_result = InferenceRequestResults( - request_id="exec_123", - status=RequestStatus.COMPLETED, - output_files=[OutputFile(path="output.zarr", size=1024)], - completion_time=datetime.now(), - ) - mock_client.wait_for_completion.return_value = mock_inference_result - mock_client.result_root_path.return_value = ( - "/v1/infer/test/exec_123/results/" - ) - - mock_ds = xr.Dataset() - mock_open_zarr.return_value = mock_ds - - result = RemoteEarth2WorkflowResult(workflow, "exec_123") - ds = result.as_dataset() - - assert ds is mock_ds - # Verify xr_args were passed - assert mock_open_zarr.call_args[1]["decode_coords"] is False - - # Test NetCDF format - with patch("xarray.open_dataset") as mock_open_dataset: - mock_inference_result = InferenceRequestResults( - request_id="exec_123", - status=RequestStatus.COMPLETED, - output_files=[OutputFile(path="output.nc", size=512)], - completion_time=datetime.now(), - ) - mock_client.wait_for_completion.return_value = mock_inference_result - mock_client.download_result.return_value = MagicMock() - - result = RemoteEarth2WorkflowResult(workflow, "exec_123") - result._result = None # Reset cache - ds = result.as_dataset() - - mock_client.download_result.assert_called_once() - mock_open_dataset.assert_called_once() - - def test_as_dataset_no_outputs(self) -> None: - """Test as_dataset when no output files are available""" - with patch( - "earth2studio.serve.client.e2client.Earth2StudioClient" - ) as mock_client_class: - mock_client = Mock() - mock_client_class.return_value = mock_client - - mock_inference_result = InferenceRequestResults( - request_id="exec_123", - status=RequestStatus.COMPLETED, - output_files=[], - completion_time=datetime.now(), - ) - mock_client.wait_for_completion.return_value = mock_inference_result - - workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - ) - result = RemoteEarth2WorkflowResult(workflow, "exec_123") - - with pytest.raises( - Earth2StudioAPIError, match="did not return any outputs" - ): - result.as_dataset() - - def test_as_data_source_and_model(self) -> None: - """Test as_data_source and as_model methods""" - with ( - patch( - "earth2studio.serve.client.e2client.Earth2StudioClient" - ) as mock_client_class, - patch("xarray.open_zarr"), - patch( - "earth2studio.serve.client.e2client.InferenceOutputSource" - ) as mock_ios_class, - ): - mock_client = Mock() - mock_client.timeout = 30.0 # used by as_dataset for zarr_timeout - mock_client_class.return_value = mock_client - - mock_inference_result = InferenceRequestResults( - request_id="exec_123", - status=RequestStatus.COMPLETED, - output_files=[OutputFile(path="output.zarr", size=1024)], - completion_time=datetime.now(), - ) - mock_client.wait_for_completion.return_value = mock_inference_result - mock_client.result_root_path.return_value = ( - "/v1/infer/test/exec_123/results/" - ) - - workflow = RemoteEarth2Workflow( - base_url="http://localhost:8000", - workflow_name="test_workflow", - ) - result = RemoteEarth2WorkflowResult(workflow, "exec_123") - - # Test as_data_source - result.as_data_source() - mock_ios_class.assert_called_once() - - # Test as_model with different iteration coordinates - model = result.as_model(iter_coord="lead_time") - assert isinstance(model, InferenceOutputModel) - assert model.iter_coord == "lead_time" - - model = result.as_model(iter_coord="time") - assert model.iter_coord == "time" - - -class TestConvertTimeToLeadTime: - """Test _convert_time_to_lead_time function""" - - def test_convert_time_to_lead_time(self) -> None: - """Test converting time coordinate to lead_time""" - # Create test data - shape should match coord order: (time, lead_time, variable, lat, lon) - x = torch.randn(3, 1, 4, 5, 6) - start_time = np.datetime64("2024-01-01T00:00:00") - times = np.array( - [ - np.datetime64("2024-01-01T00:00:00"), - np.datetime64("2024-01-01T06:00:00"), - np.datetime64("2024-01-01T12:00:00"), - ] - ) - - coords = OrderedDict( - { - "time": times, - "lead_time": np.array([np.timedelta64(0, "h")]), - "variable": np.array(["u10m", "v10m", "t2m", "tp"]), - "lat": np.arange(5), - "lon": np.arange(6), - } - ) - - x_new, coords_new = _convert_time_to_lead_time(x, coords, start_time) - - # Verify transformation - assert coords_new["time"].shape == (1,) - assert coords_new["time"][0] == start_time - assert coords_new["lead_time"].shape == (3,) - # Verify lead times are correct - expected_lead_times = times - start_time - np.testing.assert_array_equal(coords_new["lead_time"], expected_lead_times) - - def test_convert_time_to_lead_time_preserves_other_coords(self) -> None: - """Test that other coordinates are preserved""" - # Shape: (time, lead_time, variable, lat, lon) - x = torch.randn(2, 1, 3, 4, 5) - start_time = np.datetime64("2024-01-01T00:00:00") - times = np.array( - [ - np.datetime64("2024-01-01T00:00:00"), - np.datetime64("2024-01-01T06:00:00"), - ] - ) - - coords = OrderedDict( - { - "time": times, - "lead_time": np.array([np.timedelta64(0, "h")]), - "variable": np.array(["u10m", "v10m", "t2m"]), - "lat": np.arange(4), - "lon": np.arange(5), - } - ) - - _, coords_new = _convert_time_to_lead_time(x, coords, start_time) - - # Verify other coordinates are unchanged - np.testing.assert_array_equal(coords_new["variable"], coords["variable"]) - np.testing.assert_array_equal(coords_new["lat"], coords["lat"]) - np.testing.assert_array_equal(coords_new["lon"], coords["lon"]) - - -class TestInferenceOutputModel: - """Test InferenceOutputModel class""" - - @pytest.fixture - def mock_data_source(self) -> Any: - """Create a mock InferenceOutputSource""" - mock_ds = Mock() - - # Create mock DataArray with coordinates - times = np.array( - [ - np.datetime64("2024-01-01T00:00:00"), - np.datetime64("2024-01-01T06:00:00"), - ] - ) - variables = np.array(["u10m", "v10m", "t2m"]) - lats = np.arange(10) - lons = np.arange(20) - - # Create mock coordinate objects that support slicing - mock_time_coord = Mock() - mock_time_coord.values = times - mock_time_coord.__getitem__ = Mock( - side_effect=lambda key: Mock(values=times[key]) - ) - - mock_lat_coord = Mock() - mock_lat_coord.values = lats - - mock_lon_coord = Mock() - mock_lon_coord.values = lons - - mock_da = Mock() - mock_da.coords = { - "time": mock_time_coord, - "variable": variables, - "lat": mock_lat_coord, - "lon": mock_lon_coord, - } - - mock_ds.da = mock_da - return mock_ds - - def test_initialization(self, mock_data_source: Any) -> None: - """Test InferenceOutputModel initialization with default and custom variables""" - # Test with default variables - model = InferenceOutputModel( - data_source=mock_data_source, - iter_coord="lead_time", - device="cpu", - ) - assert model.iter_coord == "lead_time" - assert model.device == "cpu" - np.testing.assert_array_equal( - model.variables, np.array(["u10m", "v10m", "t2m"]) - ) - - # Test with custom variables - model = InferenceOutputModel( - data_source=mock_data_source, - variables=["u10m", "v10m"], - device="cpu", - ) - np.testing.assert_array_equal(model.variables, np.array(["u10m", "v10m"])) - - def test_coords(self, mock_data_source: Any) -> None: - """Test input_coords and output_coords methods""" - model = InferenceOutputModel( - data_source=mock_data_source, - iter_coord="lead_time", - device="cpu", - ) - - # Test input_coords - input_coords = model.input_coords() - assert isinstance(input_coords, OrderedDict) - assert len(input_coords["time"]) == 0 - assert len(input_coords["variable"]) == 0 - - # Test output_coords - output_coords = model.output_coords(OrderedDict()) - assert isinstance(output_coords, OrderedDict) - np.testing.assert_array_equal( - output_coords["variable"], np.array(["u10m", "v10m", "t2m"]) - ) - assert len(output_coords["lat"]) == 10 - assert len(output_coords["lon"]) == 20 - # Time step should be inferred as 6 hours - assert output_coords["lead_time"][0] == np.timedelta64(6, "h") - - def test_output_coords_single_time_step(self) -> None: - """Test output_coords with only one time step""" - mock_ds = Mock() - - # Single time step - times = np.array([np.datetime64("2024-01-01T00:00:00")]) - - # Create mock coordinate that supports slicing - mock_time_coord = Mock() - mock_time_coord.values = times - mock_time_coord.__getitem__ = Mock( - side_effect=lambda key: Mock(values=times[key]) - ) - - mock_lat_coord = Mock() - mock_lat_coord.values = np.arange(10) - - mock_lon_coord = Mock() - mock_lon_coord.values = np.arange(20) - - mock_da = Mock() - mock_da.coords = { - "time": mock_time_coord, - "variable": np.array(["u10m"]), - "lat": mock_lat_coord, - "lon": mock_lon_coord, - } - mock_ds.da = mock_da - - model = InferenceOutputModel( - data_source=mock_ds, - iter_coord="lead_time", - device="cpu", - ) - - output_coords = model.output_coords(OrderedDict()) - - # Should use default placeholder of 6 hours - assert output_coords["lead_time"][0] == np.timedelta64(6, "h") - - def test_to_device(self, mock_data_source: Any) -> None: - """Test to() method""" - model = InferenceOutputModel( - data_source=mock_data_source, - iter_coord="lead_time", - device="cpu", - ) - - result = model.to("cuda") - assert model.device == "cuda" - assert result is model - - def test_call_method(self, mock_data_source: Any) -> None: - """Test __call__ method returns first item from iterator""" - model = InferenceOutputModel( - data_source=mock_data_source, - iter_coord="lead_time", - device="cpu", - ) - - mock_tensor = torch.randn(1, 1, 3, 10, 20) - mock_coords = OrderedDict({"time": np.array([np.datetime64("2024-01-01")])}) - - with patch.object( - model, "create_iterator", return_value=iter([(mock_tensor, mock_coords)]) - ): - x, coords = model() - assert torch.is_tensor(x) - assert isinstance(coords, OrderedDict) - - def test_create_iterator(self, mock_data_source: Any) -> None: - """Test create_iterator with and without lead_time conversion""" - model = InferenceOutputModel( - data_source=mock_data_source, - iter_coord="time", - device="cpu", - ) - - # Mock fetch_data to return different data for each time - def mock_fetch_data( - source: Any, time: Any, variable: Any, device: Any - ) -> tuple[Any, Any]: - tensor = torch.randn(1, 3, 10, 20) - coords = OrderedDict( - { - "time": time, - "variable": variable, - "lat": np.arange(10), - "lon": np.arange(20), - } - ) - return (tensor, coords) - - with patch( - "earth2studio.serve.client.e2client.fetch_data", - side_effect=mock_fetch_data, - ): - iterator = model.create_iterator() - results = list(iterator) - - # Should yield data for both time steps - assert len(results) == 2 - for x, coords in results: - assert torch.is_tensor(x) - assert isinstance(coords, OrderedDict) - - def test_create_iterator_with_lead_time_conversion( - self, mock_data_source: Any - ) -> None: - """Test create_iterator with lead_time coordinate conversion""" - model = InferenceOutputModel( - data_source=mock_data_source, - iter_coord="lead_time", - device="cpu", - ) - - mock_tensor = torch.randn(1, 3, 10, 20) - mock_coords = OrderedDict( - { - "time": np.array([np.datetime64("2024-01-01T00:00:00")]), - "variable": np.array(["u10m", "v10m", "t2m"]), - "lat": np.arange(10), - "lon": np.arange(20), - "lead_time": np.array([np.timedelta64(0, "h")]), - } - ) - - with ( - patch( - "earth2studio.serve.client.e2client.fetch_data", - return_value=(mock_tensor, mock_coords), - ), - patch( - "earth2studio.serve.client.e2client._convert_time_to_lead_time", - return_value=(mock_tensor, mock_coords), - ) as mock_convert, - ): - iterator = model.create_iterator() - next(iterator) - - # Verify conversion was called - mock_convert.assert_called_once() - - -class TestInferenceOutputModelIntegration: - """Integration tests for InferenceOutputModel""" - - def test_model_mimics_prognostic_interface(self) -> None: - """Test that InferenceOutputModel provides prognostic model interface""" - mock_ds = Mock() - - times = np.array([np.datetime64("2024-01-01T00:00:00")]) - - # Create mock coordinate that supports slicing - mock_time_coord = Mock() - mock_time_coord.values = times - mock_time_coord.__getitem__ = Mock( - side_effect=lambda key: Mock(values=times[key]) - ) - - mock_lat_coord = Mock() - mock_lat_coord.values = np.arange(10) - - mock_lon_coord = Mock() - mock_lon_coord.values = np.arange(20) - - mock_da = Mock() - mock_da.coords = { - "time": mock_time_coord, - "variable": np.array(["u10m"]), - "lat": mock_lat_coord, - "lon": mock_lon_coord, - } - mock_ds.da = mock_da - - model = InferenceOutputModel( - data_source=mock_ds, - iter_coord="lead_time", - device="cpu", - ) - - # Verify interface methods exist and return correct types - assert hasattr(model, "input_coords") - assert hasattr(model, "output_coords") - assert hasattr(model, "to") - assert hasattr(model, "create_iterator") - assert callable(model) - assert isinstance(model.input_coords(), OrderedDict) - assert isinstance(model.output_coords(OrderedDict()), OrderedDict) diff --git a/test/serve/client/test_fsspec_utils.py b/test/serve/client/test_fsspec_utils.py deleted file mode 100644 index ec0936d86..000000000 --- a/test/serve/client/test_fsspec_utils.py +++ /dev/null @@ -1,378 +0,0 @@ -#!/usr/bin/env python3 -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -from datetime import datetime -from unittest.mock import MagicMock, Mock, patch - -import pytest - -from earth2studio.serve.client.fsspec_utils import ( - SignedURLFileSystem, - create_cloudfront_mapper, - get_mapper, -) -from earth2studio.serve.client.models import ( - InferenceRequestResults, - RequestStatus, - StorageType, -) - - -class TestSignedURLFileSystemInit: - """Test SignedURLFileSystem initialization.""" - - def test_init_stores_params(self) -> None: - """Init stores base_fs, query_params, base_url and builds query_string.""" - base_fs = Mock() - query_params = {"Policy": "p", "Signature": "s", "Key-Pair-Id": "k"} - base_url = "https://example.com/store" - fs = SignedURLFileSystem(base_fs, query_params, base_url) - assert fs._fs is base_fs - assert fs._query_params == query_params - assert fs._base_url == base_url - assert "Policy=p" in fs._query_string - assert "Signature=s" in fs._query_string - assert "Key-Pair-Id=k" in fs._query_string - - -class TestSignedURLFileSystemMakeSignedPath: - """Test _make_signed_path.""" - - def test_relative_path_appends_to_base_url(self) -> None: - """Relative path is joined with base_url and query string appended.""" - base_fs = Mock() - fs = SignedURLFileSystem( - base_fs, {"Policy": "p", "Signature": "s"}, "https://example.com/zarr" - ) - out = fs._make_signed_path("subdir/.zmetadata") - assert out.startswith("https://example.com/zarr/subdir/.zmetadata") - assert "Policy=p" in out - assert "Signature=s" in out - assert "?" in out - - def test_relative_path_empty_uses_base_url_only(self) -> None: - """Empty relative path uses base_url only.""" - base_fs = Mock() - fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com/") - out = fs._make_signed_path("") - assert out in ("https://example.com/?Policy=p", "https://example.com?Policy=p") - - def test_path_starting_with_http_unchanged_with_query_appended(self) -> None: - """Path starting with http is used as full URL; query params appended.""" - base_fs = Mock() - fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com") - out = fs._make_signed_path("https://cdn.example.com/path") - assert out.startswith("https://cdn.example.com/path") - assert "Policy=p" in out - - def test_url_with_existing_query_uses_ampersand(self) -> None: - """If URL already has ?, separator is &.""" - base_fs = Mock() - fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com?foo=1") - out = fs._make_signed_path("x") - assert "&Policy=" in out or "&policy=" in out.lower() - - -class TestSignedURLFileSystemHandle403: - """Test _handle_403.""" - - def test_403_raises_file_not_found(self) -> None: - """Exception containing 403 raises FileNotFoundError.""" - base_fs = Mock() - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - with pytest.raises(FileNotFoundError, match="File not found: /path"): - fs._handle_403(Exception("HTTP 403 Forbidden"), "/path") - - def test_forbidden_text_raises_file_not_found(self) -> None: - """Exception containing 'forbidden' raises FileNotFoundError.""" - base_fs = Mock() - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - with pytest.raises(FileNotFoundError, match="File not found: /x"): - fs._handle_403(Exception("Access forbidden"), "/x") - - def test_other_exception_reraises(self) -> None: - """Non-403 exception is reraised.""" - base_fs = Mock() - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - with pytest.raises(ValueError, match="other"): - fs._handle_403(ValueError("other"), "/path") - - -class TestSignedURLFileSystemOpen: - """Test _open.""" - - def test_open_success_returns_file_like(self) -> None: - """Successful _open returns result from base fs _open.""" - base_fs = Mock() - base_fs._open.return_value = MagicMock() - fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com") - result = fs._open("sub/file", mode="rb") - assert result is base_fs._open.return_value - base_fs._open.assert_called_once() - call_url = base_fs._open.call_args[0][0] - assert ( - "sub/file" in call_url - or "sub%2Ffile" in call_url - or call_url.endswith("sub/file") - ) - assert base_fs._open.call_args[1]["mode"] == "rb" - - def test_open_403_raises_file_not_found(self) -> None: - """Base _open raising 403 leads to FileNotFoundError.""" - base_fs = Mock() - base_fs._open.side_effect = Exception("403 Forbidden") - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - with pytest.raises(FileNotFoundError, match="File not found"): - fs._open("x") - - -class TestSignedURLFileSystemCatFile: - """Test cat_file.""" - - def test_cat_file_success(self) -> None: - """cat_file success returns content from base fs.""" - base_fs = Mock() - base_fs.cat_file.return_value = b"content" - fs = SignedURLFileSystem(base_fs, {"Policy": "p"}, "https://example.com") - result = fs.cat_file("path/to/file") - assert result == b"content" - base_fs.cat_file.assert_called_once() - assert "path/to/file" in base_fs.cat_file.call_args[0][0] or "path" in str( - base_fs.cat_file.call_args - ) - - def test_cat_file_with_start_end(self) -> None: - """cat_file passes start/end to base fs.""" - base_fs = Mock() - base_fs.cat_file.return_value = b"xx" - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - fs.cat_file("f", start=0, end=10) - base_fs.cat_file.assert_called_once() - assert base_fs.cat_file.call_args[1]["start"] == 0 - assert base_fs.cat_file.call_args[1]["end"] == 10 - - def test_cat_file_403_raises_file_not_found(self) -> None: - """cat_file 403 raises FileNotFoundError.""" - base_fs = Mock() - base_fs.cat_file.side_effect = Exception("403") - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - with pytest.raises(FileNotFoundError): - fs.cat_file("x") - - -class TestSignedURLFileSystemCatFileAsync: - """Test _cat_file (delegates to cat_file).""" - - def test_cat_file_delegates_to_cat_file(self) -> None: - """_cat_file calls cat_file with same args.""" - base_fs = Mock() - base_fs.cat_file.return_value = b"data" - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - result = fs._cat_file("a", start=1, end=2) - assert result == b"data" - base_fs.cat_file.assert_called_once() - assert base_fs.cat_file.call_args[1]["start"] == 1 - assert base_fs.cat_file.call_args[1]["end"] == 2 - - -class TestSignedURLFileSystemInfo: - """Test info.""" - - def test_info_success(self) -> None: - """info returns metadata from base fs.""" - base_fs = Mock() - base_fs.info.return_value = {"size": 100, "type": "file"} - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - result = fs.info("path") - assert result == {"size": 100, "type": "file"} - - def test_info_403_raises_file_not_found(self) -> None: - """info 403 raises FileNotFoundError.""" - base_fs = Mock() - base_fs.info.side_effect = Exception("Forbidden") - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - with pytest.raises(FileNotFoundError): - fs.info("x") - - -class TestSignedURLFileSystemExists: - """Test exists.""" - - def test_exists_true(self) -> None: - """exists returns True when base fs returns True.""" - base_fs = Mock() - base_fs.exists.return_value = True - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - assert fs.exists("path") is True - - def test_exists_403_returns_false(self) -> None: - """exists returns False when base raises 403.""" - base_fs = Mock() - base_fs.exists.side_effect = Exception("403 Forbidden") - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - assert fs.exists("path") is False - - def test_exists_false_when_base_returns_false(self) -> None: - """exists returns False when base fs returns False.""" - base_fs = Mock() - base_fs.exists.return_value = False - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - assert fs.exists("path") is False - - def test_exists_other_exception_reraises(self) -> None: - """exists re-raises non-403 exceptions.""" - base_fs = Mock() - base_fs.exists.side_effect = RuntimeError("network error") - fs = SignedURLFileSystem(base_fs, {}, "https://example.com") - with pytest.raises(RuntimeError, match="network error"): - fs.exists("path") - - -class TestCreateCloudfrontMapper: - """Test create_cloudfront_mapper.""" - - def test_create_cloudfront_mapper_builds_mapper(self) -> None: - """create_cloudfront_mapper parses URL and returns FSMap with SignedURLFileSystem.""" - signed_url = "https://cdn.example.com/bucket/path?Policy=pol&Signature=sig&Key-Pair-Id=kid" - with patch("earth2studio.serve.client.fsspec_utils.fsspec") as mock_fsspec: - mock_fs = Mock() - mock_fsspec.filesystem.return_value = mock_fs - mock_map = Mock() - mock_fsspec.mapping.FSMap = mock_map - result = create_cloudfront_mapper(signed_url) - mock_fsspec.filesystem.assert_called_once_with("https") - mock_map.assert_called_once() - call_kwargs = mock_map.call_args[1] - assert call_kwargs["root"] == "" - assert call_kwargs["check"] is False - assert call_kwargs["create"] is False - assert isinstance(call_kwargs["fs"], SignedURLFileSystem) - assert result is mock_map.return_value - - def test_create_cloudfront_mapper_with_zarr_path(self) -> None: - """create_cloudfront_mapper with zarr_path appends to base URL.""" - signed_url = "https://cdn.example.com/bucket?Policy=p&Signature=s&Key-Pair-Id=k" - with patch("earth2studio.serve.client.fsspec_utils.fsspec") as mock_fsspec: - mock_fs = Mock() - mock_fsspec.filesystem.return_value = mock_fs - mock_map = Mock() - mock_fsspec.mapping.FSMap = mock_map - create_cloudfront_mapper(signed_url, zarr_path="results.zarr") - fs_arg = mock_map.call_args[1]["fs"] - assert isinstance(fs_arg, SignedURLFileSystem) - assert "results.zarr" in fs_arg._base_url - - def test_create_cloudfront_mapper_strips_trailing_wildcard(self) -> None: - """URL path with trailing /* or * is stripped.""" - signed_url = ( - "https://cdn.example.com/bucket/*?Policy=p&Signature=s&Key-Pair-Id=k" - ) - with patch("earth2studio.serve.client.fsspec_utils.fsspec") as mock_fsspec: - mock_fs = Mock() - mock_fsspec.filesystem.return_value = mock_fs - mock_fsspec.mapping.FSMap = Mock() - create_cloudfront_mapper(signed_url) - fs_arg = mock_fsspec.mapping.FSMap.call_args[1]["fs"] - assert "*" not in fs_arg._base_url - assert fs_arg._base_url.rstrip("/").endswith("bucket") - - -class TestGetMapper: - """Test get_mapper.""" - - def test_get_mapper_server_returns_none(self) -> None: - """get_mapper returns None for SERVER storage.""" - result = InferenceRequestResults( - request_id="r1", - status=RequestStatus.COMPLETED, - output_files=[], - completion_time=datetime.now(), - storage_type=StorageType.SERVER, - ) - assert get_mapper(result) is None - - def test_get_mapper_s3_with_signed_url_returns_mapper(self) -> None: - """get_mapper with S3 and signed_url returns mapper from create_cloudfront_mapper.""" - result = InferenceRequestResults( - request_id="r1", - status=RequestStatus.COMPLETED, - output_files=[], - completion_time=datetime.now(), - storage_type=StorageType.S3, - signed_url="https://cdn.example.com/path?Policy=p&Signature=s&Key-Pair-Id=k", - ) - with patch( - "earth2studio.serve.client.fsspec_utils.create_cloudfront_mapper" - ) as mock_create: - mock_create.return_value = Mock() - out = get_mapper(result) - assert out is mock_create.return_value - mock_create.assert_called_once_with(result.signed_url, "") - - def test_get_mapper_s3_with_zarr_path_passes_through(self) -> None: - """get_mapper passes zarr_path to create_cloudfront_mapper.""" - result = InferenceRequestResults( - request_id="r1", - status=RequestStatus.COMPLETED, - output_files=[], - completion_time=datetime.now(), - storage_type=StorageType.S3, - signed_url="https://cdn.example.com?Policy=p&Signature=s&Key-Pair-Id=k", - ) - with patch( - "earth2studio.serve.client.fsspec_utils.create_cloudfront_mapper" - ) as mock_create: - mock_create.return_value = Mock() - get_mapper(result, zarr_path="results.zarr") - mock_create.assert_called_once_with(result.signed_url, "results.zarr") - - def test_get_mapper_s3_without_signed_url_raises(self) -> None: - """get_mapper with S3 and no signed_url raises ValueError.""" - result = InferenceRequestResults( - request_id="r1", - status=RequestStatus.COMPLETED, - output_files=[], - completion_time=datetime.now(), - storage_type=StorageType.S3, - signed_url=None, - ) - with pytest.raises(ValueError, match="S3 storage type requires a signed URL"): - get_mapper(result) - - def test_get_mapper_unsupported_storage_raises(self) -> None: - """get_mapper with unsupported storage type raises ValueError.""" - result = InferenceRequestResults( - request_id="r1", - status=RequestStatus.COMPLETED, - output_files=[], - completion_time=datetime.now(), - storage_type=StorageType.SERVER, # will override via monkeypatch for unsupported - ) - # Use a storage type that doesn't exist in enum by creating a mock with invalid type - with patch.object(result, "storage_type", "invalid"): - # StorageType.SERVER is enum; "invalid" would be if we had another enum value. - # Instead simulate by patching the comparison: get_mapper checks - # request_result.storage_type == StorageType.S3 and == StorageType.SERVER. - # So unsupported = something that is neither. We need a value that is not - # StorageType.S3 and not StorageType.SERVER. StorageType only has SERVER and S3. - # So we need to pass something that fails both. E.g. a mock with storage_type - # that returns False for both. Or add a fake enum value. Easiest: patch - # StorageType to add a third value temporarily, or pass a mock object. - mock_result = Mock() - mock_result.storage_type = "unsupported_type" - with pytest.raises(ValueError, match="Unsupported storage type"): - get_mapper(mock_result) diff --git a/test/serve/conftest.py b/test/serve/conftest.py new file mode 100644 index 000000000..8eacca441 --- /dev/null +++ b/test/serve/conftest.py @@ -0,0 +1,112 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +""" +Shared pytest configuration for service tests. + +This conftest.py ensures that the service/inferenceserver directory is in the +Python path so that api_server modules can be imported. +""" + +import sys +from pathlib import Path + +# Add service/inferenceserver to Python path for imports +_inferenceserver_path = ( + Path(__file__).parent.parent.parent / "service" / "inferenceserver" +) +if str(_inferenceserver_path) not in sys.path: + sys.path.insert(0, str(_inferenceserver_path)) + +# Store original api_server.config module to restore it if it gets mocked +_original_config_module = None + + +def pytest_configure(config): + """Store the original api_server.config module before any tests run""" + global _original_config_module + if "api_server.config" in sys.modules: + _original_config_module = sys.modules["api_server.config"] + + +def pytest_runtest_setup(item): + """Restore the real api_server.config module before test_config.py tests""" + # Only restore for test_config.py tests to avoid interfering with other tests + if "test_config" in str(item.fspath): + import importlib + + # Remove any mock that might have been set by other test files + if "api_server.config" in sys.modules: + # Check if it's a mock (Mock objects have _mock_name attribute or are Mock instances) + config_module = sys.modules["api_server.config"] + is_mock = ( + hasattr(config_module, "_mock_name") + or str(type(config_module)) == "" + or ( + hasattr(config_module, "__class__") + and "Mock" in str(config_module.__class__) + ) + ) + if is_mock: + # It's a mock, restore the real module + # First, clear any references in parent modules + if "api_server" in sys.modules: + api_server_module = sys.modules["api_server"] + if ( + hasattr(api_server_module, "config") + and api_server_module.config is config_module + ): + delattr(api_server_module, "config") + # Remove the mock from sys.modules + del sys.modules["api_server.config"] + # Also clear any submodules that might reference the mock + modules_to_remove = [ + key + for key in sys.modules.keys() + if key.startswith("api_server.config.") + ] + for key in modules_to_remove: + del sys.modules[key] + # Force reload the real module to ensure fresh state + if "api_server.config" not in sys.modules: + importlib.import_module("api_server.config") + else: + # Only reload if it was a mock, otherwise just ensure state is correct + config_module = sys.modules["api_server.config"] + is_mock = ( + hasattr(config_module, "_mock_name") + or str(type(config_module)) == "" + ) + if is_mock: + importlib.reload(sys.modules["api_server.config"]) + # Ensure _config_manager and ConfigManager._instance are properly initialized + real_config = sys.modules["api_server.config"] + # Check if _config_manager is a mock and reset if needed + cm = getattr(real_config, "_config_manager", None) + if cm is not None and ( + hasattr(cm, "_mock_name") or str(type(cm)) == "" + ): + real_config._config_manager = None + # Check if ConfigManager._instance is a mock and reset if needed + if hasattr(real_config, "ConfigManager") and hasattr( + real_config.ConfigManager, "_instance" + ): + inst = getattr(real_config.ConfigManager, "_instance", None) + if inst is not None and ( + hasattr(inst, "_mock_name") + or str(type(inst)) == "" + ): + real_config.ConfigManager._instance = None diff --git a/test/serve/server/conftest.py b/test/serve/server/conftest.py deleted file mode 100644 index 197a365e5..000000000 --- a/test/serve/server/conftest.py +++ /dev/null @@ -1,88 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -import sys -from pathlib import Path - -# Repo root is parent of test/serve/server; ensure project is importable -_repo_root = Path(__file__).resolve().parent.parent.parent -if str(_repo_root) not in sys.path: - sys.path.insert(0, str(_repo_root)) - -# Store original earth2studio.serve.server.config module to restore if mocked -_original_config_module = None - -_CONFIG_MODULE = "earth2studio.serve.server.config" - - -def pytest_configure(config): - """Store the original config module before any tests run""" - global _original_config_module - if _CONFIG_MODULE in sys.modules: - _original_config_module = sys.modules[_CONFIG_MODULE] - - -def pytest_runtest_setup(item): - """Restore the real config module before test_config.py tests""" - if "test_config" not in str(item.fspath): - return - import importlib - - if _CONFIG_MODULE in sys.modules: - config_module = sys.modules[_CONFIG_MODULE] - is_mock = ( - hasattr(config_module, "_mock_name") - or str(type(config_module)) == "" - or ( - hasattr(config_module, "__class__") - and "Mock" in str(config_module.__class__) - ) - ) - if is_mock: - if "earth2studio.serve.server" in sys.modules: - server_module = sys.modules["earth2studio.serve.server"] - if ( - hasattr(server_module, "config") - and server_module.config is config_module - ): - delattr(server_module, "config") - del sys.modules[_CONFIG_MODULE] - modules_to_remove = [ - k for k in sys.modules if k.startswith(_CONFIG_MODULE + ".") - ] - for k in modules_to_remove: - del sys.modules[k] - if _CONFIG_MODULE not in sys.modules: - importlib.import_module(_CONFIG_MODULE) - else: - config_module = sys.modules[_CONFIG_MODULE] - is_mock = ( - hasattr(config_module, "_mock_name") - or str(type(config_module)) == "" - ) - if is_mock: - importlib.reload(sys.modules[_CONFIG_MODULE]) - real_config = sys.modules[_CONFIG_MODULE] - # Check if ConfigManager._instance is a mock and reset if needed - if hasattr(real_config, "ConfigManager") and hasattr( - real_config.ConfigManager, "_instance" - ): - inst = getattr(real_config.ConfigManager, "_instance", None) - if inst is not None and ( - hasattr(inst, "_mock_name") - or str(type(inst)) == "" - ): - real_config.ConfigManager._instance = None diff --git a/test/serve/server/test_cleanup_daemon.py b/test/serve/server/test_cleanup_daemon.py deleted file mode 100644 index fb4800639..000000000 --- a/test/serve/server/test_cleanup_daemon.py +++ /dev/null @@ -1,775 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -import json -from datetime import datetime, timedelta, timezone -from unittest.mock import MagicMock, patch - -import pytest - -from earth2studio.serve.server.cleanup_daemon import ( - _delete_result_files, - _process_expired_key, - cleanup_expired_results, - main, -) -from earth2studio.serve.server.config import get_config -from earth2studio.serve.server.workflow import WorkflowStatus - - -class TestDeleteResultFiles: - """Test suite for _delete_result_files function""" - - @pytest.fixture - def mock_redis(self): - """Create a mock Redis client""" - return MagicMock() - - def test_delete_workflow_files_with_workflow_name(self, mock_redis): - """Test deletion of workflow execution files including workflow-specific directories and metadata""" - # Setup - workflow_name = "custom_workflow" - execution_id = "exec_456" - combined_id = f"{workflow_name}:{execution_id}" - zip_filename = f"workflow_{combined_id}.zip" - - mock_redis.get.return_value = zip_filename - - # Mock zip file - mock_zip_file = MagicMock() - mock_zip_file.exists.return_value = True - mock_zip_file.unlink = MagicMock() - - # Mock metadata file for workflow - mock_metadata_file = MagicMock() - mock_metadata_file.is_file.return_value = True - mock_metadata_file.is_dir.return_value = False - mock_metadata_file.name = f"metadata_{combined_id}.json" - mock_metadata_file.unlink = MagicMock() - - # Mock workflow directory - mock_workflow_dir = MagicMock() - mock_workflow_dir.exists.return_value = True - - mock_workflow_subdir = MagicMock() - mock_workflow_subdir.is_dir.return_value = True - mock_workflow_subdir.is_file.return_value = False - mock_workflow_subdir.name = f"output_{execution_id}" - - mock_workflow_dir.iterdir.return_value = [mock_workflow_subdir] - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_output_dir.__truediv__ = lambda self, other: mock_workflow_dir - - mock_zip_dir = MagicMock() - mock_zip_dir.__truediv__ = lambda self, other: mock_zip_file - mock_zip_dir.iterdir.return_value = [mock_metadata_file] - - with patch( - "earth2studio.serve.server.cleanup_daemon.shutil.rmtree" - ) as mock_rmtree: - # Execute - _delete_result_files( - mock_redis, - combined_id, - execution_id, - mock_output_dir, - mock_zip_dir, - workflow_name=workflow_name, - ) - - # Verify zip file deleted - mock_zip_file.unlink.assert_called_once() - - # Verify metadata file deleted - mock_metadata_file.unlink.assert_called_once() - - # Verify workflow-specific directory deleted - mock_rmtree.assert_called_once_with(mock_workflow_subdir) - - def test_delete_files_no_zip_in_redis(self, mock_redis): - """Test deletion when no zip file is found in Redis""" - # Setup - result_id = "result_789" - mock_redis.get.return_value = None - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - - # Execute - should not raise exception - _delete_result_files( - mock_redis, result_id, result_id, mock_output_dir, mock_zip_dir - ) - - # Verify Redis was queried - mock_redis.get.assert_called_once() - - def test_delete_result_files_zip_file_missing(self, mock_redis): - """When zip filename is in Redis but file does not exist, no unlink is called.""" - result_id = "req_123" - mock_redis.get.return_value = "missing.zip" - - mock_zip_path = MagicMock() - mock_zip_path.exists.return_value = False - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - mock_zip_dir.__truediv__ = lambda self, other: mock_zip_path - - _delete_result_files( - mock_redis, result_id, result_id, mock_output_dir, mock_zip_dir - ) - - mock_zip_path.unlink.assert_not_called() - - def test_delete_result_files_legacy_path_deletes_metadata_and_dirs( - self, mock_redis - ): - """Without workflow_name, still deletes metadata files and raw/zip dirs matching search_id.""" - search_id = "exec_789" - result_id = search_id - mock_redis.get.return_value = None - - mock_metadata_file = MagicMock() - mock_metadata_file.is_file.return_value = True - mock_metadata_file.is_dir.return_value = False - mock_metadata_file.name = f"metadata_{search_id}.json" - mock_metadata_file.unlink = MagicMock() - - mock_raw_dir = MagicMock() - mock_raw_dir.is_dir.return_value = True - mock_raw_dir.name = f"output_{search_id}" - mock_raw_dir.__str__ = lambda self: f"output_{search_id}" - - mock_zip_subdir = MagicMock() - mock_zip_subdir.is_dir.return_value = True - mock_zip_subdir.name = f"results_{search_id}" - mock_zip_subdir.__str__ = lambda self: f"results_{search_id}" - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [mock_raw_dir] - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [mock_metadata_file, mock_zip_subdir] - - with patch( - "earth2studio.serve.server.cleanup_daemon.shutil.rmtree" - ) as mock_rmtree: - _delete_result_files( - mock_redis, - result_id, - search_id, - mock_output_dir, - mock_zip_dir, - ) - - mock_metadata_file.unlink.assert_called_once() - assert mock_rmtree.call_count == 2 # raw dir + zip_dir subdir - rmtree_calls = {str(c[0][0]) for c in mock_rmtree.call_args_list} - assert f"output_{search_id}" in rmtree_calls or mock_rmtree.call_count == 2 - - def test_delete_result_files_workflow_dir_not_exists(self, mock_redis): - """When workflow_name is set but workflow subdirectory does not exist, no rmtree on it.""" - workflow_name = "my_wf" - execution_id = "exec_1" - combined_id = f"{workflow_name}:{execution_id}" - mock_redis.get.return_value = None - - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_workflow_dir = MagicMock() - mock_workflow_dir.exists.return_value = False # workflow dir not present - mock_output_dir.__truediv__ = lambda self, other: mock_workflow_dir - - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - - with patch( - "earth2studio.serve.server.cleanup_daemon.shutil.rmtree" - ) as mock_rmtree: - _delete_result_files( - mock_redis, - combined_id, - execution_id, - mock_output_dir, - mock_zip_dir, - workflow_name=workflow_name, - ) - - mock_workflow_dir.iterdir.assert_not_called() - mock_rmtree.assert_not_called() - - -class TestProcessExpiredKey: - """Test suite for _process_expired_key function""" - - @pytest.fixture - def mock_redis(self): - """Create a mock Redis client""" - return MagicMock() - - @pytest.fixture - def mock_delete_func(self): - """Create a mock delete function""" - return MagicMock() - - def test_process_expired_key_success(self, mock_redis, mock_delete_func): - """Test successful processing of an expired key""" - # Setup - key = "workflow_execution:wf1:exec_123" - current_time = datetime.now(timezone.utc) - old_time = current_time - timedelta(hours=25) # 25 hours ago - results_ttl_hours = 24 - - request_data = { - "status": WorkflowStatus.COMPLETED, - "end_time": old_time.isoformat(), - "execution_id": "exec_123", - } - - mock_redis.get.return_value = json.dumps(request_data) - config = get_config() - - # Execute - result = _process_expired_key( - redis_client=mock_redis, - key=key, - current_time=current_time, - results_ttl_hours=results_ttl_hours, - retention_ttl=config.redis.retention_ttl, - expected_status=WorkflowStatus.COMPLETED, - get_end_time_field="end_time", - delete_files_func=mock_delete_func, - log_prefix="workflow", - ) - - # Verify - assert result is True - mock_delete_func.assert_called_once_with(mock_redis, key) - mock_redis.setex.assert_called_once() - args = mock_redis.setex.call_args[0] - assert args[0] == key - assert args[1] == config.redis.retention_ttl - updated_data = json.loads(args[2]) - assert updated_data["status"] == WorkflowStatus.EXPIRED - - def test_process_expired_key_not_expired(self, mock_redis, mock_delete_func): - """Test processing of a key that is not yet expired""" - # Setup - key = "workflow_execution:wf1:exec_456" - current_time = datetime.now(timezone.utc) - recent_time = current_time - timedelta(hours=12) # 12 hours ago - results_ttl_hours = 24 - - request_data = { - "status": WorkflowStatus.COMPLETED, - "end_time": recent_time.isoformat(), - "execution_id": "exec_456", - } - - mock_redis.get.return_value = json.dumps(request_data) - - # Execute - result = _process_expired_key( - redis_client=mock_redis, - key=key, - current_time=current_time, - results_ttl_hours=results_ttl_hours, - retention_ttl=604800, - expected_status=WorkflowStatus.COMPLETED, - get_end_time_field="end_time", - delete_files_func=mock_delete_func, - log_prefix="workflow", - ) - - # Verify - should not clean up - assert result is False - mock_delete_func.assert_not_called() - mock_redis.setex.assert_not_called() - - def test_process_expired_key_key_missing(self, mock_redis, mock_delete_func): - """When Redis returns None for the key, return False without calling delete.""" - mock_redis.get.return_value = None - - result = _process_expired_key( - redis_client=mock_redis, - key="workflow_execution:wf1:exec_123", - current_time=datetime.now(timezone.utc), - results_ttl_hours=24, - retention_ttl=604800, - expected_status=WorkflowStatus.COMPLETED, - get_end_time_field="end_time", - delete_files_func=mock_delete_func, - log_prefix="workflow", - ) - - assert result is False - mock_delete_func.assert_not_called() - mock_redis.setex.assert_not_called() - - def test_process_expired_key_wrong_status(self, mock_redis, mock_delete_func): - """When status is not expected (e.g. RUNNING), return False.""" - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=25)).isoformat() - mock_redis.get.return_value = json.dumps( - {"status": WorkflowStatus.RUNNING, "end_time": old_time} - ) - - result = _process_expired_key( - redis_client=mock_redis, - key="workflow_execution:wf1:exec_123", - current_time=current_time, - results_ttl_hours=24, - retention_ttl=604800, - expected_status=WorkflowStatus.COMPLETED, - get_end_time_field="end_time", - delete_files_func=mock_delete_func, - log_prefix="workflow", - ) - - assert result is False - mock_delete_func.assert_not_called() - mock_redis.setex.assert_not_called() - - def test_process_expired_key_no_end_time(self, mock_redis, mock_delete_func): - """When end_time and completion_time are missing, return False.""" - mock_redis.get.return_value = json.dumps({"status": WorkflowStatus.COMPLETED}) - - result = _process_expired_key( - redis_client=mock_redis, - key="workflow_execution:wf1:exec_123", - current_time=datetime.now(timezone.utc), - results_ttl_hours=24, - retention_ttl=604800, - expected_status=WorkflowStatus.COMPLETED, - get_end_time_field="end_time", - delete_files_func=mock_delete_func, - log_prefix="workflow", - ) - - assert result is False - mock_delete_func.assert_not_called() - mock_redis.setex.assert_not_called() - - def test_process_expired_key_uses_completion_time_fallback( - self, mock_redis, mock_delete_func - ): - """When end_time is missing but completion_time is present, use it and expire.""" - config = get_config() - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - mock_redis.get.return_value = json.dumps( - { - "status": WorkflowStatus.COMPLETED, - "completion_time": old_time, - } - ) - - result = _process_expired_key( - redis_client=mock_redis, - key="workflow_execution:wf1:exec_old", - current_time=current_time, - results_ttl_hours=24, - retention_ttl=config.redis.retention_ttl, - expected_status=WorkflowStatus.COMPLETED, - get_end_time_field="end_time", - delete_files_func=mock_delete_func, - log_prefix="workflow", - ) - - assert result is True - mock_delete_func.assert_called_once() - mock_redis.setex.assert_called_once() - updated = json.loads(mock_redis.setex.call_args[0][2]) - assert updated["status"] == WorkflowStatus.EXPIRED - - def test_process_expired_key_invalid_timestamp(self, mock_redis, mock_delete_func): - """When timestamp is invalid, log warning and return False.""" - mock_redis.get.return_value = json.dumps( - { - "status": WorkflowStatus.COMPLETED, - "end_time": "not-a-valid-timestamp", - } - ) - - result = _process_expired_key( - redis_client=mock_redis, - key="workflow_execution:wf1:exec_123", - current_time=datetime.now(timezone.utc), - results_ttl_hours=24, - retention_ttl=604800, - expected_status=WorkflowStatus.COMPLETED, - get_end_time_field="end_time", - delete_files_func=mock_delete_func, - log_prefix="workflow", - ) - - assert result is False - mock_delete_func.assert_not_called() - mock_redis.setex.assert_not_called() - - -class TestCleanupExpiredResults: - """Test suite for cleanup_expired_results function""" - - @pytest.fixture - def mock_redis(self): - """Create a mock Redis client""" - return MagicMock() - - @pytest.fixture - def cleanup_args(self): - """Default args for cleanup_expired_results (no module-level config).""" - config = get_config() - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_output_dir.__truediv__ = lambda self, other: MagicMock( - exists=lambda: False - ) - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - return { - "results_ttl_hours": config.server.results_ttl_hours, - "retention_ttl": config.redis.retention_ttl, - "default_output_dir": mock_output_dir, - "results_zip_dir": mock_zip_dir, - } - - def test_cleanup_expired_results_workflow_only(self, mock_redis, cleanup_args): - """Test cleanup with workflow executions only""" - # Setup - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - recent_time = (current_time - timedelta(hours=12)).isoformat() - - # Mock Redis keys - only workflow keys - mock_redis.keys.return_value = [ - "workflow_execution:wf1:exec_old", - "workflow_execution:wf2:exec_recent", - ] - - # Mock Redis get responses - def get_side_effect(key): - if key == "workflow_execution:wf1:exec_old": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": old_time} - ) - elif key == "workflow_execution:wf2:exec_recent": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": recent_time} - ) - return None - - mock_redis.get.side_effect = get_side_effect - - with patch("earth2studio.serve.server.cleanup_daemon._delete_result_files"): - # Execute - cleanup_expired_results(mock_redis, **cleanup_args) - - # Verify - should process 1 workflow (exec_old), skip exec_recent - assert mock_redis.setex.call_count == 1 - - # Verify the expired key was updated - setex_calls = mock_redis.setex.call_args_list - expired_keys = [call[0][0] for call in setex_calls] - assert "workflow_execution:wf1:exec_old" in expired_keys - - def test_cleanup_expired_results_no_keys(self, mock_redis, cleanup_args): - """Test cleanup when there are no keys in Redis""" - # Setup - mock_redis.keys.return_value = [] - - # Execute - cleanup_expired_results(mock_redis, **cleanup_args) - - # Verify - no cleanup operations - mock_redis.setex.assert_not_called() - - def test_cleanup_expired_results_all_recent(self, mock_redis, cleanup_args): - """Test cleanup when all workflow keys are recent (not expired)""" - # Setup - current_time = datetime.now(timezone.utc) - recent_time = (current_time - timedelta(hours=5)).isoformat() - - mock_redis.keys.return_value = [ - "workflow_execution:wf1:exec_1", - "workflow_execution:wf2:exec_2", - ] - - mock_redis.get.return_value = json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": recent_time} - ) - - # Execute - cleanup_expired_results(mock_redis, **cleanup_args) - - # Verify - no cleanup operations (not expired) - mock_redis.setex.assert_not_called() - - def test_cleanup_expired_results_redis_get_failure(self, mock_redis, cleanup_args): - """Test cleanup handles Redis get failures gracefully""" - # Setup - mock_redis.keys.return_value = [ - "workflow_execution:wf_fail:exec_1", - "workflow_execution:wf_ok:exec_2", - ] - - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - - # First key causes exception, second succeeds - def get_side_effect(key): - if key == "workflow_execution:wf_fail:exec_1": - raise Exception("Redis connection error") - elif key == "workflow_execution:wf_ok:exec_2": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": old_time} - ) - return None - - mock_redis.get.side_effect = get_side_effect - - with (patch("earth2studio.serve.server.cleanup_daemon._delete_result_files"),): - # Execute - should not raise exception - cleanup_expired_results(mock_redis, **cleanup_args) - - # Verify - exec_2 should still be processed despite exec_1 error - assert mock_redis.setex.call_count == 1 - assert mock_redis.setex.call_args[0][0] == "workflow_execution:wf_ok:exec_2" - - def test_cleanup_expired_results_delete_files_failure( - self, mock_redis, cleanup_args - ): - """Test cleanup handles file deletion failures gracefully and does not mark as expired""" - # Setup - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - - mock_redis.keys.return_value = ["workflow_execution:wf_fail:exec_fail"] - - mock_redis.get.return_value = json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": old_time} - ) - - with patch( - "earth2studio.serve.server.cleanup_daemon._delete_result_files" - ) as mock_delete: - mock_delete.side_effect = Exception("File deletion error") - - # Execute - should handle exception and continue - cleanup_expired_results(mock_redis, **cleanup_args) - - # Verify delete was attempted - mock_delete.assert_called_once() - - # Status should NOT be updated if file deletion fails - # (we want to retry cleanup on next run) - assert mock_redis.setex.call_count == 0 - - def test_cleanup_expired_results_workflow_execution(self, mock_redis, cleanup_args): - """Test cleanup of workflow execution keys""" - # Setup - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - - mock_redis.keys.return_value = ["workflow_execution:my_workflow:exec_123"] - - mock_redis.get.return_value = json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": old_time} - ) - - with patch( - "earth2studio.serve.server.cleanup_daemon._delete_result_files" - ) as mock_delete: - # Execute - cleanup_expired_results(mock_redis, **cleanup_args) - - # Verify workflow was cleaned up - assert mock_redis.setex.call_count == 1 - assert ( - mock_redis.setex.call_args[0][0] - == "workflow_execution:my_workflow:exec_123" - ) - - # Verify delete was called with correct parameters - mock_delete.assert_called_once() - call_args = mock_delete.call_args - assert call_args[1]["result_id"] == "my_workflow:exec_123" - assert call_args[1]["search_id"] == "exec_123" - assert call_args[1]["workflow_name"] == "my_workflow" - - def test_cleanup_expired_results_custom_ttl_config(self, mock_redis): - """Test cleanup with custom TTL configuration""" - # Custom 48 hour TTL (pass as args; no module-level config) - config = get_config() - mock_output_dir = MagicMock() - mock_output_dir.iterdir.return_value = [] - mock_output_dir.__truediv__ = lambda self, other: MagicMock( - exists=lambda: False - ) - mock_zip_dir = MagicMock() - mock_zip_dir.iterdir.return_value = [] - - current_time = datetime.now(timezone.utc) - # 30 hours ago - should NOT be expired with 48 hour TTL - time_30h_ago = (current_time - timedelta(hours=30)).isoformat() - # 50 hours ago - should be expired with 48 hour TTL - time_50h_ago = (current_time - timedelta(hours=50)).isoformat() - - mock_redis.keys.return_value = [ - "workflow_execution:wf_30h:exec_30h", - "workflow_execution:wf_50h:exec_50h", - ] - - def get_side_effect(key): - if key == "workflow_execution:wf_30h:exec_30h": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": time_30h_ago} - ) - elif key == "workflow_execution:wf_50h:exec_50h": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": time_50h_ago} - ) - return None - - mock_redis.get.side_effect = get_side_effect - - with patch("earth2studio.serve.server.cleanup_daemon._delete_result_files"): - # Execute with 48 hour TTL - cleanup_expired_results( - mock_redis, - results_ttl_hours=48, - retention_ttl=config.redis.retention_ttl, - default_output_dir=mock_output_dir, - results_zip_dir=mock_zip_dir, - ) - - # Verify - only exec_50h should be cleaned up - assert mock_redis.setex.call_count == 1 - assert ( - mock_redis.setex.call_args[0][0] == "workflow_execution:wf_50h:exec_50h" - ) - - def test_cleanup_expired_results_malformed_key_skipped( - self, mock_redis, cleanup_args - ): - """Keys with fewer than 3 parts (e.g. 'workflow_execution:incomplete') are skipped.""" - current_time = datetime.now(timezone.utc) - old_time = (current_time - timedelta(hours=30)).isoformat() - - mock_redis.keys.return_value = [ - "workflow_execution:incomplete", # only 2 parts - "workflow_execution:wf1:exec_old", - ] - - def get_side_effect(key): - if key == "workflow_execution:wf1:exec_old": - return json.dumps( - {"status": WorkflowStatus.COMPLETED, "end_time": old_time} - ) - return None - - mock_redis.get.side_effect = get_side_effect - - with patch("earth2studio.serve.server.cleanup_daemon._delete_result_files"): - cleanup_expired_results(mock_redis, **cleanup_args) - - # Only the valid key (exec_old) should be processed; malformed key is skipped - assert mock_redis.setex.call_count == 1 - assert mock_redis.setex.call_args[0][0] == "workflow_execution:wf1:exec_old" - - -class TestCleanupDaemonMain: - """Tests for main() daemon entrypoint.""" - - def test_main_redis_connection_failure_exits_with_one(self, tmp_path): - """When Redis connection or ping fails, main() calls sys.exit(1).""" - mock_config = MagicMock() - mock_config.paths.default_output_dir = str(tmp_path / "out") - mock_config.paths.results_zip_dir = str(tmp_path / "zip") - mock_config.server.results_ttl_hours = 24 - mock_config.server.cleanup_watchdog_sec = 60 - mock_config.redis.retention_ttl = 604800 - mock_config.redis.host = "localhost" - mock_config.redis.port = 6379 - mock_config.redis.db = 0 - mock_config.redis.password = None - mock_config.redis.decode_responses = True - mock_config.redis.socket_connect_timeout = 5 - mock_config.redis.socket_timeout = 5 - - mock_redis_instance = MagicMock() - mock_redis_instance.ping.side_effect = Exception("Connection refused") - - with ( - patch( - "earth2studio.serve.server.cleanup_daemon.get_config", - return_value=mock_config, - ), - patch( - "earth2studio.serve.server.cleanup_daemon.redis.Redis", - return_value=mock_redis_instance, - ), - patch("earth2studio.serve.server.cleanup_daemon.sys.exit") as mock_exit, - ): - mock_exit.side_effect = SystemExit(1) - with pytest.raises(SystemExit): - main() - mock_exit.assert_called_once_with(1) - - def test_main_runs_one_cycle_then_handles_keyboard_interrupt(self, tmp_path): - """When time.sleep raises KeyboardInterrupt (e.g. SIGINT), main() exits gracefully and closes Redis.""" - mock_config = MagicMock() - mock_config.paths.default_output_dir = str(tmp_path / "out") - mock_config.paths.results_zip_dir = str(tmp_path / "zip") - mock_config.server.results_ttl_hours = 24 - mock_config.server.cleanup_watchdog_sec = 60 - mock_config.redis.retention_ttl = 604800 - mock_config.redis.host = "localhost" - mock_config.redis.port = 6379 - mock_config.redis.db = 0 - mock_config.redis.password = None - mock_config.redis.decode_responses = True - mock_config.redis.socket_connect_timeout = 5 - mock_config.redis.socket_timeout = 5 - - mock_redis_instance = MagicMock() - mock_redis_instance.ping.return_value = True - mock_redis_instance.close = MagicMock() - - with ( - patch( - "earth2studio.serve.server.cleanup_daemon.get_config", - return_value=mock_config, - ), - patch( - "earth2studio.serve.server.cleanup_daemon.redis.Redis", - return_value=mock_redis_instance, - ), - patch("earth2studio.serve.server.cleanup_daemon.cleanup_expired_results"), - patch("earth2studio.serve.server.cleanup_daemon.signal.signal"), - patch( - "earth2studio.serve.server.cleanup_daemon.time.sleep", - side_effect=KeyboardInterrupt, - ), - ): - main() - mock_redis_instance.close.assert_called_once() diff --git a/test/serve/server/test_cpu_worker.py b/test/serve/server/test_cpu_worker.py deleted file mode 100644 index 45e2c9553..000000000 --- a/test/serve/server/test_cpu_worker.py +++ /dev/null @@ -1,1403 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -import json -import sys -import tempfile -import zipfile -from dataclasses import dataclass, field -from datetime import datetime -from typing import Literal -from unittest.mock import Mock, patch - -import pytest -import redis - - -# Create mock config classes before importing cpu_worker -@dataclass -class MockRedisConfig: - """Mock Redis configuration""" - - host: str = "localhost" - port: int = 6379 - db: int = 0 - password: str | None = None - socket_connect_timeout: int = 5 - socket_timeout: int = 5 - decode_responses: bool = True - retention_ttl: int = 604800 # Redis key retention TTL in seconds (7 days) - - -@dataclass -class MockQueueConfig: - """Mock queue configuration""" - - name: str = "inference" - result_zip_queue_name: str = "result_zip" - object_storage_queue_name: str = "object_storage" - finalize_metadata_queue_name: str = "finalize_metadata" - max_size: int = 10 - default_timeout: str = "1h" - job_timeout: str = "2h" - - -# Secure temp dir for mock path defaults (S108) -_secure_test_dir = tempfile.mkdtemp(prefix="e2s_testing_") - - -@dataclass -class MockPathsConfig: - """Mock paths configuration""" - - default_output_dir: str = field(default_factory=lambda: _secure_test_dir) - results_zip_dir: str = field(default_factory=lambda: _secure_test_dir) - output_format: Literal["zarr", "netcdf4"] = "zarr" - result_zip_enabled: bool = False - - -@dataclass -class MockLoggingConfig: - """Mock logging configuration""" - - level: str = "INFO" - format: str = "%(asctime)s - %(name)s - %(levelname)s - %(message)s" - - -@dataclass -class MockServerConfig: - """Mock server configuration""" - - host: str = "0.0.0.0" # noqa: S104 - port: int = 8000 - workers: int = 1 - title: str = "REST API" - description: str = "REST API for running workflows" - version: str = "1.0.0" - docs_url: str = "/docs" - redoc_url: str = "/redoc" - - -@dataclass -class MockCORSConfig: - """Mock CORS configuration""" - - allow_origins: list = field(default_factory=lambda: ["*"]) - allow_credentials: bool = True - allow_methods: list = field(default_factory=lambda: ["*"]) - allow_headers: list = field(default_factory=lambda: ["*"]) - - -@dataclass -class MockObjectStorageConfig: - """Mock object storage configuration""" - - enabled: bool = False - bucket: str | None = None - region: str = "us-east-1" - prefix: str = "outputs" - access_key_id: str | None = None - secret_access_key: str | None = None - session_token: str | None = None - cloudfront_domain: str | None = None - cloudfront_key_pair_id: str | None = None - cloudfront_private_key_path: str | None = None - signed_url_expires_in: int = 3600 - - -@dataclass -class MockAppConfig: - """Mock root configuration""" - - redis: MockRedisConfig = field(default_factory=MockRedisConfig) - queue: MockQueueConfig = field(default_factory=MockQueueConfig) - paths: MockPathsConfig = field(default_factory=MockPathsConfig) - logging: MockLoggingConfig = field(default_factory=MockLoggingConfig) - server: MockServerConfig = field(default_factory=MockServerConfig) - cors: MockCORSConfig = field(default_factory=MockCORSConfig) - object_storage: MockObjectStorageConfig = field( - default_factory=MockObjectStorageConfig - ) - - -# Create a mock config module -mock_config_module = Mock() -mock_config_module.AppConfig = MockAppConfig -mock_config_module.get_config = Mock(return_value=MockAppConfig()) -mock_config_module.get_config_manager = Mock() - -pytest.importorskip("earth2studio.serve.server") - -# Inject the mock before importing cpu_worker -sys.modules["earth2studio.serve.server.config"] = mock_config_module - -# Now import the module under test -from earth2studio.serve.server.cpu_worker import ( # noqa: E402 # noqa: E402 - FileManifestEntry, - ResultMetadata, - build_file_manifest, - create_results_zip, - fail_workflow, - process_finalize_metadata, - process_object_storage_upload, - process_result_zip, -) -from earth2studio.serve.server.workflow import WorkflowResult # noqa: E402 - - -class TestCreateResultsZip: - """Test suite for create_results_zip function""" - - @pytest.fixture - def mock_redis(self): - """Mock Redis client""" - return Mock(spec=redis.Redis) - - @pytest.fixture - def inference_request(self): - """Sample inference request data""" - return { - "id": "test_req_123", - "type": "deterministic", - "status": "completed", - "completion_time": "2024-01-01T12:00:00Z", - "execution_time_seconds": 45.5, - "created_at": "2024-01-01T11:00:00Z", - "peak_memory_usage": "2.5GB", - "device": "cuda:0", - "request": { - "workflow_type": "deterministic", - "time": "2024-01-01T00:00:00Z", - "nsteps": 10, - "prognostic": {"model_type": "fcn"}, - "data": {"source_type": "gfs"}, - "io": {"backend_type": "zarr"}, - }, - } - - def test_create_results_zip_with_single_file( - self, mock_redis, inference_request, tmp_path - ): - """Test creating zip with a single output file""" - # Create a temporary output file - output_file = tmp_path / "output.nc" - output_file.write_text("test data content") - file_size = output_file.stat().st_size - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_req_123", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Verify zip file was created - filename is now just request_id - assert zip_filename is not None - assert zip_filename == "test_req_123" - - zip_path = results_zip_dir / zip_filename - assert zip_path.exists() - - # Verify Redis was updated (4 times: metadata, results_zip_dir, zip, output_path) - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - - # First call: metadata (stored in Redis for finalize worker) - assert calls[0][0][0] == "inference_request:test_req_123:pending_metadata" - - # Second call: results_zip_dir path - assert calls[1][0][0] == "inference_request:test_req_123:results_zip_dir" - assert calls[1][0][2] == str(results_zip_dir) - - # Third call: zip filename - assert calls[2][0][0] == "inference_request_zips:test_req_123:zip_file" - assert calls[2][0][2] == zip_filename - - # Fourth call: output path - assert calls[3][0][0] == "inference_request:test_req_123:output_path" - assert calls[3][0][1] == 86400 # 24 hours - assert calls[3][0][2] == str(output_file) - - # Verify zip contents - metadata.json is NOT in the zip - with zipfile.ZipFile(zip_path, "r") as zf: - file_list = zf.namelist() - assert "metadata.json" not in file_list # metadata is now separate - assert "output.nc" in file_list - - # Verify metadata is stored in Redis (not as file - file is created by finalize worker) - # Get the metadata from the first setex call - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Verify metadata structure - assert metadata["request_id"] == "test_req_123" - assert metadata["status"] == "completed" - assert metadata["workflow_type"] == "deterministic" - assert metadata["execution_time_seconds"] == 45.5 - assert metadata["device"] == "cuda:0" - assert "zip_created_at" in metadata - - # Verify parameters field - assert "parameters" in metadata - assert metadata["parameters"] == inference_request["request"] - assert metadata["parameters"]["workflow_type"] == "deterministic" - assert metadata["parameters"]["nsteps"] == 10 - - # Verify output_files manifest includes both the file AND the zip - assert "output_files" in metadata - assert isinstance(metadata["output_files"], list) - assert len(metadata["output_files"]) == 2 # output.nc + zip file entry - - # Convert to dict for easier checking - files_dict = {f["path"]: f["size"] for f in metadata["output_files"]} - - # Check the output file entry - assert "output.nc" in files_dict - assert files_dict["output.nc"] == file_size - - # Check the zip file entry (path = request_id) - assert "test_req_123" in files_dict - assert files_dict["test_req_123"] == zip_path.stat().st_size - - def test_create_results_zip_with_directory( - self, mock_redis, inference_request, tmp_path - ): - """Test creating zip with a directory containing multiple files""" - # Create a temporary output directory with files - output_dir = tmp_path / "output_data" - output_dir.mkdir() - - file1 = output_dir / "data1.nc" - file1.write_text("data 1 content") - file1_size = file1.stat().st_size - - file2 = output_dir / "data2.nc" - file2.write_text("data 2 content with more text") - file2_size = file2.stat().st_size - - # Create subdirectory - subdir = output_dir / "plots" - subdir.mkdir() - file3 = subdir / "plot.png" - file3.write_bytes(b"fake png data") - file3_size = file3.stat().st_size - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_req_456", - output_path=output_dir, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Verify zip file was created - filename is now just request_id - assert zip_filename is not None - assert zip_filename == "test_req_456" - zip_path = results_zip_dir / zip_filename - assert zip_path.exists() - - # Verify zip contents - metadata.json is NOT in the zip - with zipfile.ZipFile(zip_path, "r") as zf: - file_list = zf.namelist() - assert "metadata.json" not in file_list - - # Verify files exist in zip - assert "output_data/data1.nc" in file_list - assert "output_data/data2.nc" in file_list - assert "output_data/plots/plot.png" in file_list - - # Verify metadata is stored in Redis (not as file) - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Verify output_files manifest (3 files + 1 zip entry) - assert "output_files" in metadata - output_files = metadata["output_files"] - assert len(output_files) == 4 # 3 files + zip entry - - # Convert to dict for easier checking - files_dict = {f["path"]: f["size"] for f in output_files} - - # Verify all files are in manifest with correct sizes - assert "output_data/data1.nc" in files_dict - assert files_dict["output_data/data1.nc"] == file1_size - - assert "output_data/data2.nc" in files_dict - assert files_dict["output_data/data2.nc"] == file2_size - - assert "output_data/plots/plot.png" in files_dict - assert files_dict["output_data/plots/plot.png"] == file3_size - - # Verify zip file entry (path = request_id) - assert "test_req_456" in files_dict - assert files_dict["test_req_456"] == zip_path.stat().st_size - - def test_create_results_zip_with_nonexistent_output( - self, mock_redis, inference_request, tmp_path - ): - """Test creating zip when output path doesn't exist""" - # Use nonexistent path - output_path = tmp_path / "nonexistent" - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_req_789", - output_path=output_path, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Should still create zip - filename is now just request_id - assert zip_filename is not None - assert zip_filename == "test_req_789" - zip_path = results_zip_dir / zip_filename - assert zip_path.exists() - - # Verify zip contents - should be empty (no output files) - with zipfile.ZipFile(zip_path, "r") as zf: - file_list = zf.namelist() - assert len(file_list) == 0 # No files in zip - - # Verify metadata is stored in Redis (not as file) - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # output_files should only contain the zip entry - assert "output_files" in metadata - assert len(metadata["output_files"]) == 1 # Only zip entry - assert metadata["output_files"][0]["path"] == "test_req_789" - - def test_create_results_zip_parameters_validation( - self, mock_redis, inference_request, tmp_path - ): - """Test that parameters are correctly stored in metadata""" - # Create a temporary output file - output_file = tmp_path / "output.nc" - output_file.write_text("test") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Modify inference request to have specific parameters - inference_request["request"] = { - "workflow_type": "ensemble", - "time": "2024-01-15T00:00:00Z", - "nsteps": 20, - "nensemble": 10, - "prognostic": {"model_type": "graphcast"}, - "data": {"source_type": "era5"}, - "io": {"backend_type": "netcdf"}, - "perturbation": {"method": "spherical_gaussian"}, - } - - # Call create_results_zip - result = create_results_zip( - request_id="test_req_params", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - assert result is not None - - # Verify metadata is stored in Redis (not as file) - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Verify parameters field exists and matches - assert "parameters" in metadata - params = metadata["parameters"] - - assert params["workflow_type"] == "ensemble" - assert params["time"] == "2024-01-15T00:00:00Z" - assert params["nsteps"] == 20 - assert params["nensemble"] == 10 - assert params["prognostic"]["model_type"] == "graphcast" - assert params["data"]["source_type"] == "era5" - assert params["io"]["backend_type"] == "netcdf" - assert params["perturbation"]["method"] == "spherical_gaussian" - - def test_create_results_zip_file_manifest_structure( - self, mock_redis, inference_request, tmp_path - ): - """Test that file manifest has correct structure""" - # Create output directory with multiple files - output_dir = tmp_path / "outputs" - output_dir.mkdir() - - for i in range(5): - file = output_dir / f"file_{i}.dat" - file.write_text(f"content {i}" * 100) - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_manifest", - output_path=output_dir, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Verify metadata is stored in Redis - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - manifest = metadata["output_files"] - - # Verify manifest structure (5 files + 1 zip entry) - assert isinstance(manifest, list) - assert len(manifest) == 6 # 5 files + zip entry - - # Find the zip entry (path = request_id) - zip_entry = None - file_entries = [] - for entry in manifest: - if entry["path"] == "test_manifest": - zip_entry = entry - else: - file_entries.append(entry) - - assert zip_entry is not None - assert len(file_entries) == 5 - - # Verify file entries structure - zip_path = results_zip_dir / zip_filename - with zipfile.ZipFile(zip_path, "r") as zf: - for entry in file_entries: - assert isinstance(entry, dict) - assert "path" in entry - assert "size" in entry - assert isinstance(entry["path"], str) - assert isinstance(entry["size"], int) - assert entry["size"] > 0 - - # Verify path starts with output directory name - assert entry["path"].startswith("outputs/") - - # Verify size matches actual file in zip - actual_size = zf.getinfo(entry["path"]).file_size - assert entry["size"] == actual_size - - def test_create_results_zip_missing_request_parameters(self, mock_redis, tmp_path): - """Test handling when request doesn't have parameters field""" - # Create inference request without 'request' field - inference_request = { - "id": "test_req_no_params", - "type": "deterministic", - "status": "completed", - } - - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_req_no_params", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Verify zip was created - assert zip_filename is not None - - # Verify metadata stored in Redis - parameters should be None - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Parameters should be None or not present - assert metadata.get("parameters") is None - - def test_create_results_zip_redis_failure( - self, mock_redis, inference_request, tmp_path - ): - """Test handling when Redis operation fails""" - # Make Redis setex raise an exception - mock_redis.setex.side_effect = Exception("Redis connection failed") - - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - should handle exception gracefully - zip_filename = create_results_zip( - request_id="test_redis_fail", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Should return None since storing in Redis failed - assert zip_filename is None - - def test_create_results_zip_exception_handling(self, mock_redis, tmp_path): - """Test general exception handling""" - # Use invalid inference request that will cause issues - invalid_request = None - - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip with invalid data - zip_filename = create_results_zip( - request_id="test_exception", - output_path=output_file, - inference_request=invalid_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - # Should return None on exception - assert zip_filename is None - - def test_create_results_zip_metadata_completeness( - self, mock_redis, inference_request, tmp_path - ): - """Test that all expected metadata fields are present""" - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test data") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_metadata", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - assert zip_filename is not None - - # Verify metadata stored in Redis - assert mock_redis.setex.call_count == 4 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Check all expected fields - required_fields = [ - "request_id", - "status", - "completion_time", - "execution_time_seconds", - "workflow_type", - "created_at", - "peak_memory_usage", - "device", - "zip_created_at", - "parameters", - "output_files", - ] - - for f in required_fields: - assert f in metadata, f"Missing required field: {f}" - - # Verify zip_created_at is a valid timestamp - zip_created_at = metadata["zip_created_at"] - assert zip_created_at.endswith("Z") - # Should be parseable as ISO format - datetime.fromisoformat(zip_created_at.replace("Z", "+00:00")) - - def test_create_results_zip_manifest_includes_zip_entry( - self, mock_redis, inference_request, tmp_path - ): - """Test that the manifest includes an entry for the zip file itself""" - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test data content") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - request_id = "test_zip_entry" - - # Call create_results_zip - zip_filename = create_results_zip( - request_id=request_id, - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - assert zip_filename is not None - - zip_path = results_zip_dir / zip_filename - zip_size = zip_path.stat().st_size - - # Verify metadata stored in Redis - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - - # Find the zip entry in manifest - zip_entry = None - for entry in metadata["output_files"]: - if entry["path"] == request_id: - zip_entry = entry - break - - # Verify zip entry exists and has correct size - assert zip_entry is not None, "Zip file entry not found in manifest" - assert zip_entry["path"] == request_id - assert zip_entry["size"] == zip_size - - def test_create_results_zip_output_path_stored_in_redis( - self, mock_redis, inference_request, tmp_path - ): - """Test that output path is stored in Redis""" - # Create output file - output_file = tmp_path / "output.nc" - output_file.write_text("test data") - - # Create results directory - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - # Call create_results_zip - zip_filename = create_results_zip( - request_id="test_output_path", - output_path=output_file, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - assert zip_filename is not None - - # Verify Redis setex was called 4 times (metadata, results_zip_dir, zip, output_path) - assert mock_redis.setex.call_count == 4 - - # Check the output path call (4th call) - calls = mock_redis.setex.call_args_list - output_path_call = calls[3] - - assert ( - output_path_call[0][0] == "inference_request:test_output_path:output_path" - ) - assert output_path_call[0][1] == 86400 # 24 hours - assert output_path_call[0][2] == str(output_file) - - def test_create_results_zip_manifest_only_no_zip( - self, mock_redis, inference_request, tmp_path - ): - """Test create_results_zip with create_zip=False: no zip file, manifest only.""" - output_dir = tmp_path / "out" - output_dir.mkdir() - (output_dir / "a.nc").write_text("data") - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - result = create_results_zip( - request_id="req_manifest_only", - output_path=output_dir, - inference_request=inference_request, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - create_zip=False, - ) - - assert result is None # No zip filename when create_zip=False - assert not (results_zip_dir / "req_manifest_only").exists() - # Metadata should still be stored (manifest only) - assert mock_redis.setex.call_count >= 3 - calls = mock_redis.setex.call_args_list - metadata_json = calls[0][0][2] - metadata = json.loads(metadata_json) - assert len(metadata["output_files"]) == 1 # Just the one file, no zip entry - - def test_create_results_zip_with_workflow_result(self, mock_redis, tmp_path): - """Test create_results_zip with WorkflowResult (custom workflow) path.""" - output_file = tmp_path / "out.nc" - output_file.write_text("data") - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - workflow_result = WorkflowResult( - workflow_name="my_workflow", - execution_id="exec_1", - status="completed", - start_time="2024-01-01T10:00:00Z", - end_time="2024-01-01T11:00:00Z", - execution_time_seconds=60.0, - metadata={ - "peak_memory_usage": "1GB", - "device": "cuda:0", - "parameters": {"nsteps": 5}, - }, - ) - - zip_filename = create_results_zip( - request_id="my_workflow:exec_1", - output_path=output_file, - inference_request=workflow_result, - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - assert zip_filename is not None - metadata_json = mock_redis.setex.call_args_list[0][0][2] - metadata = json.loads(metadata_json) - assert metadata.get("workflow_name") == "my_workflow" - # from_workflow_result uses workflow_result.execution_id for request_id when set - assert metadata.get("request_id") == "exec_1" - assert metadata.get("peak_memory_usage") == "1GB" - assert metadata.get("parameters", {}).get("nsteps") == 5 - - def test_create_results_zip_invalid_type_returns_none(self, mock_redis, tmp_path): - """Test that invalid inference_request type is handled (exception caught, returns None).""" - output_file = tmp_path / "out.nc" - output_file.write_text("data") - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - result = create_results_zip( - request_id="req_invalid", - output_path=output_file, - inference_request=[], # list is not dict or WorkflowResult - results_zip_dir=results_zip_dir, - redis_client=mock_redis, - ) - - assert result is None - - -class TestFailWorkflow: - """Tests for fail_workflow.""" - - def test_fail_workflow_returns_error_dict(self): - """fail_workflow returns success=False and error message.""" - out = fail_workflow("w", "e1", "Something failed") - assert out["success"] is False - assert out["error"] == "Something failed" - - def test_fail_workflow_updates_redis_when_workflow_registered(self): - """When workflow is in registry, _update_execution_data is called.""" - mock_workflow_class = Mock() - mock_workflow_class._update_execution_data = Mock() - - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - mock_registry.get_workflow_class.return_value = mock_workflow_class - with patch("earth2studio.serve.server.cpu_worker.redis_client"): - out = fail_workflow("my_wf", "exec_1", "Failed") - - assert out["success"] is False - mock_workflow_class._update_execution_data.assert_called_once() - call_args = mock_workflow_class._update_execution_data.call_args - assert call_args[0][1] == "my_wf" - assert call_args[0][2] == "exec_1" - assert call_args[0][3]["status"] == "failed" - assert call_args[0][3]["error_message"] == "Failed" - - def test_fail_workflow_exception_still_returns_dict(self): - """When _update_execution_data raises, we still return error dict.""" - mock_workflow_class = Mock() - mock_workflow_class._update_execution_data.side_effect = Exception("Redis down") - - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - mock_registry.get_workflow_class.return_value = mock_workflow_class - out = fail_workflow("w", "e1", "Err") - - assert out["success"] is False - assert out["error"] == "Err" - - -class TestBuildFileManifest: - """Tests for build_file_manifest.""" - - def test_build_file_manifest_single_file(self, tmp_path): - """Single file returns one entry.""" - f = tmp_path / "a.nc" - f.write_text("x") - entries = build_file_manifest(f) - assert len(entries) == 1 - assert entries[0].path == "a.nc" - assert entries[0].size == f.stat().st_size - - def test_build_file_manifest_directory_with_subdirs(self, tmp_path): - """Directory with subdirs is scanned recursively.""" - d = tmp_path / "out" - d.mkdir() - (d / "a.nc").write_text("a") - sub = d / "sub" - sub.mkdir() - (sub / "b.nc").write_text("bb") - entries = build_file_manifest(d) - assert len(entries) == 2 - paths = {e.path for e in entries} - assert "out/a.nc" in paths - assert "out/sub/b.nc" in paths - - def test_build_file_manifest_with_arc_prefix(self, tmp_path): - """arc_prefix is applied to paths.""" - f = tmp_path / "f.nc" - f.write_text("x") - entries = build_file_manifest(f, arc_prefix="prefix") - assert len(entries) == 1 - assert entries[0].path == "prefix/f.nc" - - def test_build_file_manifest_nonexistent_returns_empty(self, tmp_path): - """Nonexistent path returns empty list.""" - entries = build_file_manifest(tmp_path / "nonexistent") - assert entries == [] - - -class TestResultMetadata: - """Tests for ResultMetadata factory methods and to_dict.""" - - def test_from_workflow_result(self): - """ResultMetadata.from_workflow_result sets workflow_name and metadata.""" - wr = WorkflowResult( - workflow_name="custom_wf", - execution_id="exec_1", - status="completed", - start_time="2024-01-01T10:00:00Z", - end_time="2024-01-01T11:00:00Z", - execution_time_seconds=30.0, - metadata={"peak_memory_usage": "2GB", "parameters": {"n": 1}}, - ) - manifest = [FileManifestEntry(path="out.nc", size=100)] - meta = ResultMetadata.from_workflow_result( - wr, "exec_1", manifest, "2024-01-01T12:00:00Z" - ) - assert meta.request_id == "exec_1" - assert meta.workflow_name == "custom_wf" - assert meta.status == "completed" - assert meta.parameters == {"n": 1} - assert meta.output_files == manifest - - def test_from_legacy_dict(self): - """ResultMetadata.from_legacy_dict sets workflow_type from dict.""" - req = { - "status": "completed", - "completion_time": "2024-01-01T11:00:00Z", - "execution_time_seconds": 10.0, - "type": "deterministic", - "created_at": "2024-01-01T10:00:00Z", - "request": {"nsteps": 5}, - } - manifest = [FileManifestEntry(path="out.zarr", size=200)] - meta = ResultMetadata.from_legacy_dict( - req, "req_123", manifest, "2024-01-01T12:00:00Z" - ) - assert meta.request_id == "req_123" - assert meta.workflow_type == "deterministic" - assert meta.parameters == {"nsteps": 5} - - def test_to_dict_includes_workflow_name_and_type(self): - """to_dict includes workflow_name or workflow_type when set.""" - meta = ResultMetadata( - request_id="r1", - status="completed", - completion_time=None, - execution_time_seconds=None, - workflow_name="my_wf", - workflow_type=None, - output_files=[], - ) - d = meta.to_dict() - assert d["workflow_name"] == "my_wf" - assert "workflow_type" not in d - - meta2 = ResultMetadata( - request_id="r2", - status="completed", - completion_time=None, - execution_time_seconds=None, - workflow_type="ensemble", - output_files=[], - ) - d2 = meta2.to_dict() - assert d2["workflow_type"] == "ensemble" - assert "workflow_name" not in d2 - - def test_to_dict_includes_signed_url_and_remote_path(self): - """to_dict includes signed_url and remote_path when set.""" - meta = ResultMetadata( - request_id="r1", - status="completed", - completion_time=None, - execution_time_seconds=None, - signed_url="https://s3.example.com/signed", - remote_path="outputs/r1/out.nc", - output_files=[], - ) - d = meta.to_dict() - assert d["signed_url"] == "https://s3.example.com/signed" - assert d["remote_path"] == "outputs/r1/out.nc" - - -class TestProcessResultZip: - """Tests for process_result_zip RQ worker function.""" - - def test_process_result_zip_success_returns_zip_filename(self, tmp_path): - """process_result_zip with valid workflow and create_zip returns zip filename.""" - output_file = tmp_path / "out.nc" - output_file.write_text("data") - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - mock_workflow_class = Mock() - mock_workflow_class._get_execution_data.return_value = { - "id": "wf:exec_1", - "type": "deterministic", - "status": "completed", - } - mock_workflow_class._update_execution_data = Mock() - - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - with patch( - "earth2studio.serve.server.cpu_worker.redis_client" - ) as mock_redis: - with patch( - "earth2studio.serve.server.cpu_worker.queue_next_stage" - ) as mock_queue_next: - mock_registry.get_workflow_class.return_value = mock_workflow_class - mock_redis.setex = Mock() - mock_queue_next.return_value = "job_123" - - result = process_result_zip( - workflow_name="test_wf", - execution_id="exec_1", - output_path_str=str(output_file), - results_zip_dir_str=str(results_zip_dir), - create_zip=True, - ) - - assert result is not None - assert result == "test_wf:exec_1" # zip filename is request_id - mock_queue_next.assert_called_once_with( - redis_client=mock_redis, - current_stage="result_zip", - workflow_name="test_wf", - execution_id="exec_1", - output_path_str=str(output_file), - results_zip_dir_str=str(results_zip_dir), - ) - - def test_process_result_zip_workflow_not_found_raises(self, tmp_path): - """process_result_zip when workflow not in registry raises after fail_workflow.""" - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - with patch( - "earth2studio.serve.server.cpu_worker.fail_workflow" - ) as mock_fail: - mock_registry.get_workflow_class.return_value = None - - with pytest.raises(ValueError, match="not found in registry"): - process_result_zip( - workflow_name="nonexistent", - execution_id="e1", - output_path_str=str(tmp_path / "out"), - results_zip_dir_str=str(tmp_path / "zip"), - ) - mock_fail.assert_called_once() - - def test_process_result_zip_queue_next_stage_returns_none(self, tmp_path): - """When queue_next_stage returns None, fail_workflow is called and function returns None.""" - output_file = tmp_path / "out.nc" - output_file.write_text("data") - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - mock_workflow_class = Mock() - mock_workflow_class._get_execution_data.return_value = { - "type": "deterministic", - "status": "completed", - } - - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - with patch( - "earth2studio.serve.server.cpu_worker.redis_client" - ) as mock_redis: - with patch( - "earth2studio.serve.server.cpu_worker.queue_next_stage" - ) as mock_queue_next: - with patch( - "earth2studio.serve.server.cpu_worker.fail_workflow" - ) as mock_fail: - mock_registry.get_workflow_class.return_value = ( - mock_workflow_class - ) - mock_redis.setex = Mock() - mock_queue_next.return_value = None - - result = process_result_zip( - workflow_name="test_wf", - execution_id="exec_1", - output_path_str=str(output_file), - results_zip_dir_str=str(results_zip_dir), - create_zip=True, - ) - - assert result is None - mock_fail.assert_called_once() - assert "queue next pipeline stage" in mock_fail.call_args[0][2].lower() - - def test_process_result_zip_manifest_only_returns_manifest_only(self, tmp_path): - """When create_zip=False and flow succeeds, returns 'manifest_only'.""" - output_file = tmp_path / "out.nc" - output_file.write_text("data") - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - - mock_workflow_class = Mock() - mock_workflow_class._get_execution_data.return_value = { - "type": "deterministic", - "status": "completed", - } - - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - with patch( - "earth2studio.serve.server.cpu_worker.redis_client" - ) as mock_redis: - with patch( - "earth2studio.serve.server.cpu_worker.queue_next_stage" - ) as mock_queue_next: - mock_registry.get_workflow_class.return_value = mock_workflow_class - mock_redis.setex = Mock() - mock_queue_next.return_value = "job_123" - - result = process_result_zip( - workflow_name="test_wf", - execution_id="exec_1", - output_path_str=str(output_file), - results_zip_dir_str=str(results_zip_dir), - create_zip=False, - ) - - assert result == "manifest_only" - - def test_process_result_zip_create_fails_returns_none(self, tmp_path): - """When create_results_zip returns None (create_zip=True), fail_workflow and return None.""" - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - # Nonexistent output path so create_results_zip may still build manifest but we can mock return - output_path_str = str(tmp_path / "nonexistent") - - mock_workflow_class = Mock() - mock_workflow_class._get_execution_data.return_value = { - "type": "deterministic", - "status": "completed", - } - - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - with patch( - "earth2studio.serve.server.cpu_worker.redis_client" - ) as mock_redis: - with patch("earth2studio.serve.server.cpu_worker.queue_next_stage"): - with patch( - "earth2studio.serve.server.cpu_worker.create_results_zip" - ) as mock_create: - with patch( - "earth2studio.serve.server.cpu_worker.fail_workflow" - ) as mock_fail: - mock_registry.get_workflow_class.return_value = ( - mock_workflow_class - ) - mock_redis.setex = Mock() - mock_create.return_value = None # zip creation failed - - result = process_result_zip( - workflow_name="test_wf", - execution_id="exec_1", - output_path_str=output_path_str, - results_zip_dir_str=str(results_zip_dir), - create_zip=True, - ) - - assert result is None - mock_fail.assert_called_once() - assert "create results zip" in mock_fail.call_args[0][2].lower() - - -class TestProcessFinalizeMetadata: - """Tests for process_finalize_metadata RQ worker function.""" - - def test_process_finalize_metadata_success(self, tmp_path): - """process_finalize_metadata writes metadata file and updates workflow status.""" - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - request_id = "my_wf:exec_1" - - metadata_key = f"inference_request:{request_id}:pending_metadata" - results_zip_dir_key = f"inference_request:{request_id}:results_zip_dir" - storage_info_key = f"inference_request:{request_id}:storage_info" - - pending_metadata = { - "request_id": request_id, - "status": "completed", - "output_files": [], - "storage_type": "server", - } - mock_workflow_class = Mock() - mock_workflow_class._update_execution_data = Mock() - - with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - mock_redis.get.side_effect = lambda k: { - metadata_key: json.dumps(pending_metadata), - results_zip_dir_key: str(results_zip_dir), - storage_info_key: None, - }.get(k) - mock_registry.get_workflow_class.return_value = mock_workflow_class - - result = process_finalize_metadata( - workflow_name="my_wf", - execution_id="exec_1", - ) - - assert result is not None - assert result["success"] is True - assert "metadata_path" in result - metadata_path = tmp_path / "results" / f"metadata_{request_id}.json" - assert metadata_path.exists() - mock_workflow_class._update_execution_data.assert_called_once() - mock_redis.delete.assert_any_call(metadata_key) - mock_redis.delete.assert_any_call(results_zip_dir_key) - - def test_process_finalize_metadata_missing_pending_metadata_returns_failure(self): - """When pending metadata or results_zip_dir is missing in Redis, returns fail_workflow dict.""" - with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: - with patch( - "earth2studio.serve.server.cpu_worker.fail_workflow" - ) as mock_fail: - mock_redis.get.return_value = None - mock_fail.return_value = { - "success": False, - "error": "Pending metadata not found", - } - - result = process_finalize_metadata( - workflow_name="my_wf", - execution_id="exec_1", - ) - - assert result is not None and result.get("success") is False - mock_fail.assert_called_once() - assert "not found" in mock_fail.call_args[0][2].lower() - - def test_process_finalize_metadata_workflow_not_found_returns_failure( - self, tmp_path - ): - """When workflow class is not in registry, returns fail_workflow dict.""" - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - request_id = "my_wf:exec_1" - metadata_key = f"inference_request:{request_id}:pending_metadata" - results_zip_dir_key = f"inference_request:{request_id}:results_zip_dir" - - with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - with patch( - "earth2studio.serve.server.cpu_worker.fail_workflow" - ) as mock_fail: - mock_redis.get.side_effect = lambda k: { - metadata_key: json.dumps({"request_id": request_id}), - results_zip_dir_key: str(results_zip_dir), - }.get(k) - mock_registry.get_workflow_class.return_value = None - mock_fail.return_value = { - "success": False, - "error": "Workflow class not found", - } - - result = process_finalize_metadata( - workflow_name="my_wf", - execution_id="exec_1", - ) - - assert result is not None and result.get("success") is False - mock_fail.assert_called_once() - assert "not found" in mock_fail.call_args[0][2].lower() - - def test_process_finalize_metadata_with_storage_info(self, tmp_path): - """When storage_info is in Redis, it is applied to metadata and key is deleted.""" - results_zip_dir = tmp_path / "results" - results_zip_dir.mkdir() - request_id = "my_wf:exec_1" - storage_info_key = f"inference_request:{request_id}:storage_info" - pending_metadata = {"request_id": request_id, "status": "completed"} - storage_info = { - "storage_type": "s3", - "remote_path": "s3://bucket/prefix", - "signed_url": "https://signed.example.com", - } - - mock_workflow_class = Mock() - mock_workflow_class._update_execution_data = Mock() - - with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: - with patch( - "earth2studio.serve.server.cpu_worker.workflow_registry" - ) as mock_registry: - mock_redis.get.side_effect = lambda k: { - f"inference_request:{request_id}:pending_metadata": json.dumps( - pending_metadata - ), - f"inference_request:{request_id}:results_zip_dir": str( - results_zip_dir - ), - storage_info_key: json.dumps(storage_info), - }.get(k) - mock_registry.get_workflow_class.return_value = mock_workflow_class - - result = process_finalize_metadata( - workflow_name="my_wf", - execution_id="exec_1", - ) - - assert result is not None - assert result["storage_type"] == "s3" - mock_redis.delete.assert_any_call(storage_info_key) - metadata_path = tmp_path / "results" / f"metadata_{request_id}.json" - data = json.loads(metadata_path.read_text()) - assert data.get("signed_url") == "https://signed.example.com" - assert data.get("remote_path") == "s3://bucket/prefix" - - -class TestProcessObjectStorageUpload: - """Tests for process_object_storage_upload RQ worker function.""" - - def test_process_object_storage_upload_disabled_queues_finalize(self, tmp_path): - """When object storage is disabled, skips upload and queues finalize_metadata.""" - output_dir = tmp_path / "out" - output_dir.mkdir() - (output_dir / "f.nc").write_text("data") - - with patch("earth2studio.serve.server.cpu_worker.redis_client") as mock_redis: - with patch("earth2studio.serve.server.cpu_worker.config") as mock_config: - with patch( - "earth2studio.serve.server.cpu_worker.queue_next_stage" - ) as mock_queue_next: - mock_config.object_storage.enabled = False - mock_config.object_storage.bucket = None - mock_redis.setex = Mock() - mock_queue_next.return_value = "job_1" - - result = process_object_storage_upload( - workflow_name="wf", - execution_id="exec_1", - output_path_str=str(output_dir), - ) - - assert result is not None - assert result["success"] is True - assert result["storage_type"] == "server" - mock_queue_next.assert_called_once_with( - redis_client=mock_redis, - current_stage="object_storage", - workflow_name="wf", - execution_id="exec_1", - output_path_str=str(output_dir), - ) - - def test_process_object_storage_upload_output_path_missing_returns_failure(self): - """When object storage enabled but output path does not exist, returns fail_workflow dict.""" - with patch("earth2studio.serve.server.cpu_worker.config") as mock_config: - with patch( - "earth2studio.serve.server.cpu_worker.fail_workflow" - ) as mock_fail: - mock_config.object_storage.enabled = True - mock_config.object_storage.bucket = "my-bucket" - mock_fail.return_value = { - "success": False, - "error": "Output path does not exist", - } - - result = process_object_storage_upload( - workflow_name="wf", - execution_id="exec_1", - output_path_str="/nonexistent/path", - ) - - assert result is not None and result.get("success") is False - mock_fail.assert_called_once() - assert "does not exist" in mock_fail.call_args[0][2] - - -if __name__ == "__main__": - pytest.main([__file__, "-v"]) diff --git a/test/serve/server/test_object_storage.py b/test/serve/server/test_object_storage.py deleted file mode 100644 index 907441cc2..000000000 --- a/test/serve/server/test_object_storage.py +++ /dev/null @@ -1,294 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -import base64 -import sys -import tempfile -from pathlib import Path -from unittest.mock import MagicMock, patch - -import pytest - -from earth2studio.serve.server.object_storage import ( - MSCObjectStorage, - ObjectStorage, - ObjectStorageError, - UploadResult, -) - - -class TestUploadResult: - """Tests for UploadResult dataclass.""" - - def test_repr_success(self): - """__repr__ shows SUCCESS when success is True.""" - r = UploadResult( - success=True, - files_uploaded=10, - total_bytes=1000, - destination="s3://bucket/prefix", - errors=[], - ) - assert "SUCCESS" in repr(r) - assert "files=10" in repr(r) - assert "bytes=1000" in repr(r) - - def test_repr_failed(self): - """__repr__ shows FAILED when success is False.""" - r = UploadResult( - success=False, - files_uploaded=0, - total_bytes=0, - destination="s3://bucket/prefix", - errors=["error1"], - ) - assert "FAILED" in repr(r) - - -class TestObjectStorageError: - """Tests for ObjectStorageError.""" - - def test_is_exception(self): - """ObjectStorageError is a subclass of Exception.""" - assert issubclass(ObjectStorageError, Exception) - - def test_raise_and_catch(self): - """Can raise and catch ObjectStorageError with message.""" - with pytest.raises(ObjectStorageError, match="test message"): - raise ObjectStorageError("test message") - - -class TestObjectStorage: - """Tests for ObjectStorage abstract base class.""" - - def test_cannot_instantiate_directly(self): - """ObjectStorage cannot be instantiated (abstract).""" - with pytest.raises(TypeError): - ObjectStorage() - - -class TestMSCObjectStorage: - """Tests for MSCObjectStorage (with mocked multistorageclient).""" - - @pytest.fixture - def mock_msc(self): - """Mock multistorageclient module so MSCObjectStorage can be instantiated.""" - mock_module = MagicMock() - mock_module.StorageClientConfig.from_dict.side_effect = [ - MagicMock(), - MagicMock(), - ] - mock_module.StorageClient.return_value = MagicMock() - with patch.dict(sys.modules, {"multistorageclient": mock_module}): - yield mock_module - - def test_init_requires_multistorageclient(self): - """MSCObjectStorage raises ImportError if multistorageclient is not available.""" - import builtins - - real_import = builtins.__import__ - - def fail_msc(name, *args, **kwargs): - if name == "multistorageclient": - raise ImportError("No module named 'multistorageclient'") - return real_import(name, *args, **kwargs) - - with patch.object(builtins, "__import__", side_effect=fail_msc): - with pytest.raises(ImportError, match="multi-storage-client"): - MSCObjectStorage(bucket="my-bucket") - - def test_upload_directory_raises_when_dir_not_found(self, mock_msc): - """upload_directory raises FileNotFoundError when path does not exist.""" - storage = MSCObjectStorage(bucket="b", region="us-east-1") - - with pytest.raises(FileNotFoundError, match="not found"): - storage.upload_directory( - local_directory="/nonexistent/path", - remote_prefix="prefix", - ) - - def test_upload_directory_raises_when_path_not_directory(self, mock_msc): - """upload_directory raises ValueError when path is not a directory.""" - with tempfile.NamedTemporaryFile(suffix=".txt", delete=False) as f: - file_path = f.name - try: - storage = MSCObjectStorage(bucket="b", region="us-east-1") - - with pytest.raises(ValueError, match="not a directory"): - storage.upload_directory( - local_directory=file_path, - remote_prefix="prefix", - ) - finally: - Path(file_path).unlink(missing_ok=True) - - def test_upload_directory_success_returns_upload_result(self, mock_msc): - """upload_directory returns UploadResult with success when sync_from succeeds.""" - with tempfile.TemporaryDirectory() as tmpdir: - (Path(tmpdir) / "f1.txt").write_text("hello") - storage = MSCObjectStorage(bucket="b", region="us-east-1") - storage._s3_client.sync_from.return_value = None - - result = storage.upload_directory( - local_directory=tmpdir, - remote_prefix="prefix", - ) - - assert isinstance(result, UploadResult) - assert result.success is True - assert result.files_uploaded == 1 - assert result.total_bytes == 5 - assert "s3://b/prefix" in result.destination - assert result.errors == [] - - def test_upload_directory_failure_appends_errors(self, mock_msc): - """upload_directory returns success=False and appends error when sync_from raises.""" - with tempfile.TemporaryDirectory() as tmpdir: - (Path(tmpdir) / "f1.txt").write_text("x") - storage = MSCObjectStorage(bucket="b", region="us-east-1") - storage._s3_client.sync_from.side_effect = Exception("sync failed") - - result = storage.upload_directory( - local_directory=tmpdir, - remote_prefix="prefix", - ) - - assert result.success is False - assert result.files_uploaded == 0 - assert len(result.errors) == 1 - assert "sync failed" in result.errors[0] - - def test_upload_file_returns_false_when_file_not_found(self, mock_msc): - """upload_file returns False when local file does not exist.""" - storage = MSCObjectStorage(bucket="b", region="us-east-1") - - assert ( - storage.upload_file( - local_file="/nonexistent/file.txt", - remote_key="key.txt", - ) - is False - ) - - def test_upload_file_returns_true_on_success(self, mock_msc): - """upload_file returns True when upload succeeds.""" - with tempfile.NamedTemporaryFile(suffix=".txt", delete=False) as f: - f.write(b"data") - path = f.name - try: - storage = MSCObjectStorage(bucket="b", region="us-east-1") - - result = storage.upload_file( - local_file=path, - remote_key="key.txt", - ) - assert result is True - storage._s3_client.upload_file.assert_called_once() - finally: - Path(path).unlink(missing_ok=True) - - def test_upload_file_returns_false_on_exception(self, mock_msc): - """upload_file returns False when upload_file raises.""" - with tempfile.NamedTemporaryFile(suffix=".txt", delete=False) as f: - path = f.name - try: - storage = MSCObjectStorage(bucket="b", region="us-east-1") - storage._s3_client.upload_file.side_effect = Exception("upload failed") - - result = storage.upload_file( - local_file=path, - remote_key="key.txt", - ) - assert result is False - finally: - Path(path).unlink(missing_ok=True) - - def test_file_exists_returns_true_when_info_succeeds(self, mock_msc): - """file_exists returns True when info() does not raise.""" - storage = MSCObjectStorage(bucket="b", region="us-east-1") - storage._s3_client.info.return_value = None - - assert storage.file_exists("my/key") is True - - def test_file_exists_returns_false_when_file_not_found(self, mock_msc): - """file_exists returns False when info() raises FileNotFoundError.""" - storage = MSCObjectStorage(bucket="b", region="us-east-1") - storage._s3_client.info.side_effect = FileNotFoundError() - - assert storage.file_exists("my/key") is False - - def test_delete_file_returns_true_on_success(self, mock_msc): - """delete_file returns True when delete succeeds.""" - storage = MSCObjectStorage(bucket="b", region="us-east-1") - - assert storage.delete_file("my/key") is True - storage._s3_client.delete.assert_called_once() - - def test_delete_file_returns_false_when_file_not_found(self, mock_msc): - """delete_file returns False when delete raises FileNotFoundError.""" - storage = MSCObjectStorage(bucket="b", region="us-east-1") - storage._s3_client.delete.side_effect = FileNotFoundError() - - assert storage.delete_file("my/key") is False - - def test_url_safe_b64(self, mock_msc): - """_url_safe_b64 produces URL-safe base64 (no +, /, =).""" - _ = MSCObjectStorage( - bucket="b", region="us-east-1" - ) # need instance so mock_msc context is active - raw = b"hello" - result = MSCObjectStorage._url_safe_b64(raw) - # Standard b64 could have +, /, = - assert "+" not in result - assert "/" not in result - assert "=" not in result - # Decode and check round-trip (with URL-safe mapping) - decoded = base64.urlsafe_b64decode( - result.replace("-", "+").replace("_", "=").replace("~", "/") - ) - assert decoded == raw - - def test_generate_signed_url_raises_when_cloudfront_not_configured(self, mock_msc): - """generate_signed_url raises ObjectStorageError when CloudFront not configured.""" - storage = MSCObjectStorage( - bucket="b", - region="us-east-1", - cloudfront_domain=None, - cloudfront_key_pair_id=None, - cloudfront_private_key=None, - ) - - with pytest.raises(ObjectStorageError, match="CloudFront configuration"): - storage.generate_signed_url("key.txt") - - def test_generate_signed_url_returns_url_when_configured(self, mock_msc): - """generate_signed_url returns URL string when CloudFront is configured.""" - storage = MSCObjectStorage( - bucket="b", - region="us-east-1", - cloudfront_domain="d123.cloudfront.net", - cloudfront_key_pair_id="KP123", - cloudfront_private_key="-----BEGIN RSA PRIVATE KEY-----\nMIIEow==\n-----END RSA PRIVATE KEY-----", - ) - storage._rsa_signer = MagicMock(return_value=b"signature") - - url = storage.generate_signed_url("path/to/file", expires_in=3600) - - assert isinstance(url, str) - assert "d123.cloudfront.net" in url - assert "Policy=" in url - assert "Signature=" in url - assert "Key-Pair-Id=KP123" in url diff --git a/test/serve/server/test_server_main.py b/test/serve/server/test_server_main.py deleted file mode 100644 index 6c9894ff0..000000000 --- a/test/serve/server/test_server_main.py +++ /dev/null @@ -1,2132 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -import json -import os -from datetime import datetime, timezone -from typing import Any -from unittest.mock import AsyncMock, MagicMock, patch - -import pytest -from fastapi.testclient import TestClient -from pydantic import Field - -# Set API environment variable before importing main (DANGER!!! REMOVE THIS) -os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" - -# Patch FastAPI route creation to handle union return types -# This fixes the issue where FastAPI can't handle dict[str, Any] | StreamingResponse -# ruff: noqa: E402 -import fastapi # type: ignore[import-untyped] -import fastapi.routing # type: ignore[import-untyped] -from fastapi.exceptions import FastAPIError # type: ignore[import-untyped] - -_original_route_init = fastapi.routing.APIRoute.__init__ - - -def _patched_route_init(self, *args, **kwargs): - """Patched APIRoute.__init__ that handles union return types with StreamingResponse""" - import inspect - - from starlette.responses import StreamingResponse - - # Check if the endpoint has a union return type with StreamingResponse - endpoint = kwargs.get("endpoint") or (args[1] if len(args) > 1 else None) - if endpoint: - sig = inspect.signature(endpoint) - return_annotation = sig.return_annotation - if ( - hasattr(return_annotation, "__args__") - and StreamingResponse in return_annotation.__args__ - ): - # Set response_model=None to skip response model generation - kwargs["response_model"] = None - - try: - return _original_route_init(self, *args, **kwargs) - except FastAPIError as e: - if "Invalid args for response field" in str(e): - # Retry with response_model=None - kwargs["response_model"] = None - return _original_route_init(self, *args, **kwargs) - raise - - -# Apply the patch before any imports of earth2studio.serve.server.main -fastapi.routing.APIRoute.__init__ = _patched_route_init - - -class TestWorkflowSchemaEndpoint: - """Tests for GET /v1/workflows/{workflow_name}/schema endpoint""" - - @pytest.fixture - def mock_workflow_class(self): - """Create a mock workflow class with Parameters""" - from earth2studio.serve.server.workflow import Workflow, WorkflowParameters - - class TestWorkflowParameters(WorkflowParameters): - """Test parameters for unit testing""" - - forecast_times: list[str] = Field( - default=["2024-01-01T00:00:00"], - description="List of forecast initialization times", - ) - nsteps: int = Field( - default=10, - ge=1, - le=100, - description="Number of forecast steps", - ) - model_type: str = Field( - default="fcn", - description="Model type to use", - ) - - class TestWorkflow(Workflow): - name = "test_workflow" - description = "Test workflow for unit testing" - Parameters = TestWorkflowParameters - - @classmethod - def validate_parameters( - cls, parameters: dict[str, Any] | TestWorkflowParameters - ) -> TestWorkflowParameters: - return TestWorkflowParameters.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "success"} - - return TestWorkflow - - @pytest.fixture - def client(self, mock_workflow_class): - """Create test client with mocked dependencies""" - # Mock Redis and other dependencies at their source locations - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue"), - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - # Setup mock async Redis - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_instance.get = AsyncMock(return_value=None) - mock_async_redis.return_value = mock_async_instance - - # Setup mock sync Redis - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - - from earth2studio.serve.server.main import app - from earth2studio.serve.server.workflow import workflow_registry - - # Register the test workflow - workflow_registry._workflows["test_workflow"] = mock_workflow_class - - with TestClient(app, raise_server_exceptions=False) as client: - yield client - - # Cleanup - if "test_workflow" in workflow_registry._workflows: - del workflow_registry._workflows["test_workflow"] - - def test_schema_endpoint_returns_valid_json_schema( - self, client, mock_workflow_class - ): - """Test that schema endpoint returns valid JSON Schema""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - # Verify it's a valid JSON Schema structure - assert "type" in schema - assert schema["type"] == "object" - assert "properties" in schema - assert "title" in schema - - def test_schema_endpoint_includes_all_parameters(self, client, mock_workflow_class): - """Test that schema includes all defined parameters""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - properties = schema["properties"] - - # Check all parameters are present - assert "forecast_times" in properties - assert "nsteps" in properties - assert "model_type" in properties - - def test_schema_endpoint_includes_field_metadata(self, client, mock_workflow_class): - """Test that schema includes field descriptions and constraints""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - properties = schema["properties"] - - # Check forecast_times has correct type - assert properties["forecast_times"]["type"] == "array" - assert "description" in properties["forecast_times"] - - # Check nsteps has constraints - nsteps = properties["nsteps"] - assert nsteps["type"] == "integer" - assert "description" in nsteps - # Pydantic uses "minimum" and "maximum" for ge/le constraints - assert nsteps.get("minimum") == 1 or nsteps.get("exclusiveMinimum") == 0 - assert nsteps.get("maximum") == 100 or nsteps.get("exclusiveMaximum") == 101 - - def test_schema_endpoint_includes_defaults(self, client, mock_workflow_class): - """Test that schema includes default values""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - properties = schema["properties"] - - # Check defaults are included - assert properties["forecast_times"]["default"] == ["2024-01-01T00:00:00"] - assert properties["nsteps"]["default"] == 10 - assert properties["model_type"]["default"] == "fcn" - - def test_schema_endpoint_workflow_not_found(self, client): - """Test that 404 is returned for non-existent workflow""" - response = client.get("/v1/workflows/nonexistent_workflow/schema") - - assert response.status_code == 404 - error = response.json() - assert "not found" in error["detail"].lower() - - def test_schema_endpoint_openapi_compatibility(self, client, mock_workflow_class): - """Test that returned schema is OpenAPI 3.1 compatible (JSON Schema draft 2020-12)""" - response = client.get("/v1/workflows/test_workflow/schema") - - assert response.status_code == 200 - schema = response.json() - - # OpenAPI 3.1 / JSON Schema required fields - assert "type" in schema - assert "properties" in schema - - # Schema should be directly usable (no wrapper objects) - assert "workflow_name" not in schema - assert "parameters_schema" not in schema - - -class TestWorkflowParameterValidation: - """Test workflow parameter validation at submission time""" - - @pytest.fixture - def client(self): - """Create test client""" - from typing import Any, Literal - from unittest.mock import MagicMock, patch - - from pydantic import Field - - from earth2studio.serve.server.main import app - from earth2studio.serve.server.workflow import ( - Workflow, - WorkflowParameters, - workflow_registry, - ) - - # Create test workflow parameter classes with Literal validation - class TestDeterministicParams(WorkflowParameters): - forecast_times: list[str] = Field(default=["2024-01-01T00:00:00"]) - nsteps: int = Field(default=6, ge=1, le=100) - model_type: Literal["dlwp", "fcn"] = Field(default="fcn") - data_source: Literal["gfs"] = Field(default="gfs") - output_format: Literal["zarr"] = Field(default="zarr") - plot_variable: Literal["t2m", "msl", "u10m", "v10m", "tcwv", "z500"] = ( - Field(default="t2m") - ) - - class TestDiagnosticParams(WorkflowParameters): - forecast_times: list[str] = Field(default=["2024-01-01T00:00:00"]) - nsteps: int = Field(default=6, ge=1, le=100) - prognostic_model_type: Literal["dlwp", "fcn"] = Field(default="fcn") - diagnostic_model_type: Literal["precipitation_afno"] = Field( - default="precipitation_afno" - ) - data_source: Literal["gfs"] = Field(default="gfs") - plot_variable: Literal[ - "tp", "t2m", "msl", "u10m", "v10m", "tcwv", "z500" - ] = Field(default="tp") - - # Create mock workflow classes - class TestDeterministicWorkflow(Workflow): - name = "deterministic_workflow" - description = "Test deterministic workflow" - Parameters = TestDeterministicParams - - @classmethod - def validate_parameters( - cls, parameters: dict[str, Any] | TestDeterministicParams - ) -> TestDeterministicParams: - try: - return TestDeterministicParams.validate(parameters) - except Exception as e: - raise ValueError(f"Invalid parameters: {e}") from e - - def run(self, parameters, execution_id): - return {"status": "success"} - - class TestDiagnosticWorkflow(Workflow): - name = "diagnostic_workflow" - description = "Test diagnostic workflow" - Parameters = TestDiagnosticParams - - @classmethod - def validate_parameters( - cls, parameters: dict[str, Any] | TestDiagnosticParams - ) -> TestDiagnosticParams: - try: - return TestDiagnosticParams.validate(parameters) - except Exception as e: - raise ValueError(f"Invalid parameters: {e}") from e - - def run(self, parameters, execution_id): - return {"status": "success"} - - # Register test workflows directly in the registry - workflow_registry._workflows["deterministic_workflow"] = ( - TestDeterministicWorkflow - ) - workflow_registry._workflows["diagnostic_workflow"] = TestDiagnosticWorkflow - - # Create mocks - mock_redis = MagicMock() - mock_queue = MagicMock() - mock_queue.__len__ = MagicMock(return_value=0) - mock_queue.max_size = 100 - - with patch("earth2studio.serve.server.main.redis_sync_client", mock_redis): - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - test_client = TestClient(app) - yield test_client, mock_queue, mock_redis - - def test_valid_deterministic_workflow_parameters(self, client): - """Test that valid parameters for deterministic workflow are accepted""" - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_job" - mock_queue.enqueue = MagicMock(return_value=mock_job) - mock_redis.llen = MagicMock(return_value=0) - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "fcn", - "data_source": "gfs", - "output_format": "zarr", - "plot_variable": "t2m", - } - }, - ) - - assert response.status_code == 200 - data = response.json() - assert data["status"] == "queued" - - def test_invalid_model_type_rejected(self, client): - """Test that invalid model_type is rejected at submission""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "invalid_model", # Invalid value - "data_source": "gfs", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "model_type" in data["detail"] - - def test_invalid_data_source_rejected(self, client): - """Test that invalid data_source is rejected at submission""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "fcn", - "data_source": "invalid_source", # Invalid value - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "data_source" in data["detail"] - - def test_invalid_output_format_rejected(self, client): - """Test that invalid output_format is rejected at submission""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "fcn", - "data_source": "gfs", - "output_format": "invalid_format", # Invalid value - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "output_format" in data["detail"] - - def test_invalid_plot_variable_rejected(self, client): - """Test that invalid plot_variable is rejected at submission""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "model_type": "fcn", - "data_source": "gfs", - "plot_variable": "invalid_variable", # Invalid value - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "plot_variable" in data["detail"] - - def test_invalid_nsteps_range_rejected(self, client): - """Test that nsteps outside valid range is rejected""" - test_client, _, _ = client - - # Test nsteps too low - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 0, # Below minimum of 1 - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - - # Test nsteps too high - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 101, # Above maximum of 100 - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - - def test_diagnostic_workflow_invalid_model_types_rejected(self, client): - """Test that invalid model types for diagnostic workflow are rejected""" - test_client, _, _ = client - - # Test invalid prognostic model - response = test_client.post( - "/v1/infer/diagnostic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "prognostic_model_type": "invalid_prognostic", # Invalid - "diagnostic_model_type": "precipitation_afno", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "prognostic_model_type" in data["detail"] - - # Test invalid diagnostic model - response = test_client.post( - "/v1/infer/diagnostic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "prognostic_model_type": "fcn", - "diagnostic_model_type": "invalid_diagnostic", # Invalid - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "diagnostic_model_type" in data["detail"] - - def test_valid_diagnostic_workflow_parameters(self, client): - """Test that valid parameters for diagnostic workflow are accepted""" - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_job" - mock_queue.enqueue = MagicMock(return_value=mock_job) - mock_redis.llen = MagicMock(return_value=0) - - response = test_client.post( - "/v1/infer/diagnostic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 10, - "prognostic_model_type": "fcn", - "diagnostic_model_type": "precipitation_afno", - "data_source": "gfs", - "plot_variable": "tp", - } - }, - ) - - assert response.status_code == 200 - data = response.json() - assert data["status"] == "queued" - - def test_multiple_invalid_parameters_rejected(self, client): - """Test that multiple invalid parameters are caught""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": ["2024-01-01T00:00:00"], - "nsteps": 101, # Invalid: too high - "model_type": "invalid_model", # Invalid value - "data_source": "invalid_source", # Invalid value - "output_format": "invalid_format", # Invalid value - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - - def test_valid_forecast_times_iso8601_accepted(self, client): - """Test that valid ISO 8601 forecast_times are accepted""" - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_job" - mock_queue.enqueue = MagicMock(return_value=mock_job) - mock_redis.llen = MagicMock(return_value=0) - - # Test various valid ISO 8601 formats - valid_times = [ - ["2024-01-01T00:00:00"], - ["2024-01-01T00:00:00Z"], - ["2024-01-01T00:00:00+00:00"], - ["2024-01-01T00:00:00.123456"], - ["2024-01-01 00:00:00"], # Space separator also accepted - ["2024-01-01T00:00:00", "2024-01-02T00:00:00", "2024-01-03T00:00:00"], - ] - - for times in valid_times: - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": times, - "nsteps": 10, - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 200, f"Failed for times: {times}" - data = response.json() - assert data["status"] == "queued" - - def test_invalid_forecast_times_rejected(self, client): - """Test that invalid forecast_times formats are rejected""" - test_client, _, _ = client - - # Test various invalid formats - invalid_times = [ - (["2024-01-01"], "date without time"), - (["01/01/2024"], "wrong date format"), - (["not-a-date"], "completely invalid"), - (["2024-13-01T00:00:00"], "invalid month"), - (["2024-01-32T00:00:00"], "invalid day"), - (["2024-01-01T25:00:00"], "invalid hour"), - ] - - for times, description in invalid_times: - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": times, - "nsteps": 10, - "model_type": "fcn", - } - }, - ) - - assert ( - response.status_code == 422 - ), f"Expected 422 for {description}, got {response.status_code}" - data = response.json() - assert ( - "Invalid parameters" in data["detail"] - ), f"Expected validation error for {description}" - assert ( - "forecast_times" in data["detail"] - ), f"Expected forecast_times in error for {description}" - - def test_forecast_times_mixed_valid_invalid_rejected(self, client): - """Test that forecast_times with one invalid value fails""" - test_client, _, _ = client - - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": [ - "2024-01-01T00:00:00", # Valid - "not-a-date", # Invalid - "2024-01-03T00:00:00", # Valid - ], - "nsteps": 10, - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "forecast_times" in data["detail"] - - def test_forecast_times_wrong_type_rejected(self, client): - """Test that forecast_times with non-string values are rejected""" - test_client, _, _ = client - - # Test with integer - response = test_client.post( - "/v1/infer/deterministic_workflow", - json={ - "parameters": { - "forecast_times": [12345], # Not a string - "nsteps": 10, - "model_type": "fcn", - } - }, - ) - - assert response.status_code == 422 - data = response.json() - assert "Invalid parameters" in data["detail"] - assert "forecast_times" in data["detail"] - - -class TestWorkflowExecutionRequest: - """Tests for WorkflowExecutionRequest validation""" - - def test_valid_request_with_parameters(self): - """Test that valid request with parameters field is accepted""" - from earth2studio.serve.server.main import WorkflowExecutionRequest - - # Valid request - request = WorkflowExecutionRequest( - parameters={"field1": "value1", "field2": 123} - ) - assert request.parameters == {"field1": "value1", "field2": 123} - - def test_valid_request_with_empty_parameters(self): - """Test that request with empty parameters dict is accepted""" - from earth2studio.serve.server.main import WorkflowExecutionRequest - - # Empty parameters is valid - request = WorkflowExecutionRequest(parameters={}) - assert request.parameters == {} - - def test_valid_request_without_parameters_uses_default(self): - """Test that request without parameters field uses default empty dict""" - from earth2studio.serve.server.main import WorkflowExecutionRequest - - # No parameters provided - should use default - request = WorkflowExecutionRequest() - assert request.parameters == {} - - def test_invalid_request_with_extra_fields(self): - """Test that request with unknown fields is rejected""" - from pydantic import ValidationError - - from earth2studio.serve.server.main import WorkflowExecutionRequest - - # Request with unknown field should be rejected - with pytest.raises(ValidationError, match="Extra inputs are not permitted"): - WorkflowExecutionRequest( - parameters={"valid": "param"}, unknown_field="should_fail" - ) - - def test_invalid_request_with_multiple_extra_fields(self): - """Test that request with multiple unknown fields is rejected""" - from pydantic import ValidationError - - from earth2studio.serve.server.main import WorkflowExecutionRequest - - # Multiple unknown fields - with pytest.raises(ValidationError, match="Extra inputs are not permitted"): - WorkflowExecutionRequest( - parameters={"valid": "param"}, - extra1="bad", - extra2="also_bad", - extra3="still_bad", - ) - - def test_invalid_request_flat_structure(self): - """Test that flat request structure (without parameters wrapper) is rejected""" - from pydantic import ValidationError - - from earth2studio.serve.server.main import WorkflowExecutionRequest - - # Flat structure - fields that should be inside 'parameters' - with pytest.raises(ValidationError, match="Extra inputs are not permitted"): - WorkflowExecutionRequest( - forecast_times=["2024-01-01"], - nsteps=6, - model_type="fcn", - ) - - def test_invalid_request_mixed_structure(self): - """Test that mixed structure (parameters + extra fields) is rejected""" - from pydantic import ValidationError - - from earth2studio.serve.server.main import WorkflowExecutionRequest - - # Mixed: valid parameters field + invalid extra fields - with pytest.raises(ValidationError, match="Extra inputs are not permitted"): - WorkflowExecutionRequest( - parameters={"forecast_times": ["2024-01-01"], "nsteps": 6}, - workflow_type="deterministic", # This should not be at this level - device="auto", # This should not be at this level - ) - - def test_parameters_field_type_validation(self): - """Test that parameters field must be a dict""" - from pydantic import ValidationError - - from earth2studio.serve.server.main import WorkflowExecutionRequest - - # parameters must be a dict, not a string - with pytest.raises(ValidationError): - WorkflowExecutionRequest(parameters="not_a_dict") - - # parameters must be a dict, not a list - with pytest.raises(ValidationError): - WorkflowExecutionRequest(parameters=["not", "a", "dict"]) - - # parameters must be a dict, not None - with pytest.raises(ValidationError): - WorkflowExecutionRequest(parameters=None) - - def test_valid_request_serialization(self): - """Test that valid request can be serialized to dict""" - from earth2studio.serve.server.main import WorkflowExecutionRequest - - request = WorkflowExecutionRequest( - parameters={"forecast_times": ["2024-01-01"], "nsteps": 10} - ) - - # Serialize to dict - data = request.model_dump() - assert isinstance(data, dict) - assert data == {"parameters": {"forecast_times": ["2024-01-01"], "nsteps": 10}} - - def test_valid_request_with_nested_parameters(self): - """Test that request with nested parameter structures is accepted""" - from earth2studio.serve.server.main import WorkflowExecutionRequest - - # Complex nested parameters - request = WorkflowExecutionRequest( - parameters={ - "forecast_times": ["2024-01-01", "2024-01-02"], - "nsteps": 10, - "config": { - "model": {"type": "fcn", "version": "1.0"}, - "data": {"source": "gfs", "cache": True}, - }, - "options": ["opt1", "opt2", "opt3"], - } - ) - - assert request.parameters["nsteps"] == 10 - assert request.parameters["config"]["model"]["type"] == "fcn" - assert len(request.parameters["options"]) == 3 - - -class TestQueuePosition: - """Tests for queue position functionality""" - - @pytest.fixture - def mock_queue(self): - """Create a mock RQ queue with job IDs""" - from unittest.mock import MagicMock - - queue = MagicMock() - queue.job_ids = [ - "workflow1_exec_001", - "workflow2_exec_002", - "workflow1_exec_003", - "workflow3_exec_004", - ] - return queue - - def test_get_queue_position_first_in_queue(self, mock_queue): - """Test getting position for first job in queue""" - from unittest.mock import patch - - from earth2studio.serve.server.main import get_queue_position - - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - position = get_queue_position("workflow1_exec_001") - assert position == 0 # 0-indexed: first job is at position 0 - - def test_get_queue_position_middle_of_queue(self, mock_queue): - """Test getting position for job in middle of queue""" - from unittest.mock import patch - - from earth2studio.serve.server.main import get_queue_position - - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - position = get_queue_position("workflow1_exec_003") - assert position == 2 # 0-indexed: third job is at position 2 - - def test_get_queue_position_last_in_queue(self, mock_queue): - """Test getting position for last job in queue""" - from unittest.mock import patch - - from earth2studio.serve.server.main import get_queue_position - - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - position = get_queue_position("workflow3_exec_004") - assert position == 3 # 0-indexed: fourth job is at position 3 - - def test_get_queue_position_not_in_queue(self, mock_queue): - """Test getting position for job not in queue returns None""" - from unittest.mock import patch - - from earth2studio.serve.server.main import get_queue_position - - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - position = get_queue_position("nonexistent_job") - assert position is None - - def test_get_queue_position_no_queue(self): - """Test getting position when queue is not initialized returns None""" - from unittest.mock import patch - - from earth2studio.serve.server.main import get_queue_position - - with patch("earth2studio.serve.server.main.inference_queue", None): - position = get_queue_position("any_job") - assert position is None - - def test_get_queue_position_empty_queue(self): - """Test getting position when queue is empty""" - from unittest.mock import MagicMock, patch - - from earth2studio.serve.server.main import get_queue_position - - empty_queue = MagicMock() - empty_queue.job_ids = [] - - with patch("earth2studio.serve.server.main.inference_queue", empty_queue): - position = get_queue_position("any_job") - assert position is None - - def test_get_queue_position_exception_handling(self): - """Test that exceptions in get_queue_position are handled gracefully""" - from unittest.mock import MagicMock, PropertyMock, patch - - from earth2studio.serve.server.main import get_queue_position - - queue_with_error = MagicMock() - type(queue_with_error).job_ids = PropertyMock( - side_effect=Exception("Queue connection error") - ) - - with patch("earth2studio.serve.server.main.inference_queue", queue_with_error): - position = get_queue_position("any_job") - assert position is None - - -class TestWorkflowExecutionWithQueuePosition: - """Tests for workflow execution endpoint with queue position""" - - @pytest.fixture - def mock_workflow_class(self): - """Create a mock workflow class""" - from earth2studio.serve.server.workflow import Workflow, WorkflowParameters - - class TestWorkflowParameters(WorkflowParameters): - """Test parameters""" - - test_param: str = "default" - - class TestWorkflow(Workflow): - name = "test_workflow" - description = "Test workflow" - Parameters = TestWorkflowParameters - - @classmethod - def validate_parameters(cls, parameters): - return TestWorkflowParameters.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "success"} - - return TestWorkflow - - @pytest.fixture - def client(self, mock_workflow_class): - """Create test client with mocked dependencies""" - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue") as mock_queue_class, - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - # Setup mock async Redis - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_instance.get = AsyncMock(return_value=None) - mock_async_redis.return_value = mock_async_instance - - # Setup mock sync Redis - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_instance.setex = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - - # Setup mock queue - mock_queue = MagicMock() - mock_queue.__len__ = MagicMock(return_value=0) - mock_queue.job_ids = [] - mock_queue_class.return_value = mock_queue - - from earth2studio.serve.server.main import app - from earth2studio.serve.server.workflow import workflow_registry - - # Register the test workflow - workflow_registry._workflows["test_workflow"] = mock_workflow_class - - with TestClient(app, raise_server_exceptions=False) as client: - yield client, mock_queue, mock_sync_instance - - # Cleanup - if "test_workflow" in workflow_registry._workflows: - del workflow_registry._workflows["test_workflow"] - - def test_execute_workflow_includes_queue_position(self, client): - """Test that POST /v1/infer/{workflow_name} includes queue position""" - from unittest.mock import patch - - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_workflow_exec_123" - - # Before enqueue: queue size is 0 - mock_queue.__len__ = MagicMock(return_value=0) - mock_queue.enqueue = MagicMock(return_value=mock_job) - - # Redis llen returns 0 (the queue size before the job is fully committed) - mock_redis.llen = MagicMock(return_value=0) - - # Patch the inference_queue at module level - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - response = test_client.post( - "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} - ) - - assert response.status_code == 200 - data = response.json() - - # Check that position is included in response - assert "position" in data - assert data["position"] == 0 # Redis llen returns 0 (first job, position 0) - assert data["status"] == "queued" - - def test_execute_workflow_position_with_existing_jobs(self, client): - """Test that position is correct when there are existing jobs in queue""" - from unittest.mock import patch - - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_workflow_exec_456" - - # Before enqueue: queue has 2 existing jobs - mock_queue.__len__ = MagicMock(return_value=2) - mock_queue.enqueue = MagicMock(return_value=mock_job) - - # Redis llen returns 2 (the queue size before the job is fully committed) - mock_redis.llen = MagicMock(return_value=2) - - # Patch the inference_queue at module level - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - response = test_client.post( - "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} - ) - - assert response.status_code == 200 - data = response.json() - - # Check that position is correct - assert "position" in data - assert data["position"] == 2 # Redis llen returns 2 (third job, position 2) - assert data["status"] == "queued" - - def test_execute_workflow_position_with_five_existing_jobs(self, client): - """Test that position is correct with multiple existing jobs in queue""" - from unittest.mock import patch - - test_client, mock_queue, mock_redis = client - - # Setup mock job - mock_job = MagicMock() - mock_job.id = "test_workflow_exec_789" - mock_queue.enqueue = MagicMock(return_value=mock_job) - - # Before enqueue: queue has 5 existing jobs - mock_queue.__len__ = MagicMock(return_value=5) - - # Redis llen returns 5 (the queue size before the job is fully committed) - mock_redis.llen = MagicMock(return_value=5) - - # Patch the inference_queue at module level - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - response = test_client.post( - "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} - ) - - assert response.status_code == 200 - data = response.json() - - # Check that position is correct - assert "position" in data - assert data["position"] == 5 # Redis llen returns 5 (sixth job, position 5) - assert data["status"] == "queued" - - def test_get_workflow_status_includes_position_when_queued(self, client): - """Test that GET /v1/infer/{workflow_name}/{execution_id}/status includes position when status is queued""" - test_client, mock_queue, mock_redis = client - - # Setup queue with multiple jobs - execution_id = "exec_456" - job_id = f"test_workflow_{execution_id}" - - # Set up mock queue job_ids to include our job at position 1 - mock_queue.job_ids = ["other_job_1", job_id, "other_job_2"] - - # Mock Redis response for queued execution - import json - from datetime import datetime, timezone - from unittest.mock import patch - - execution_data = { - "workflow_name": "test_workflow", - "execution_id": execution_id, - "status": "queued", - "start_time": datetime.now(timezone.utc).isoformat(), - "metadata": {}, - } - mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) - - # Patch the inference_queue for get_queue_position to use - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") - - assert response.status_code == 200 - data = response.json() - - # Check that position is included and correct - assert "position" in data - assert data["position"] == 1 # Second in queue (0-indexed, so position 1) - assert data["status"] == "queued" - - def test_get_workflow_status_queued_but_not_in_queue(self, client): - """Test race condition: status is QUEUED but job not in queue (worker picked it up)""" - test_client, mock_queue, mock_redis = client - - execution_id = "exec_race" - - # Set up mock queue with empty job_ids (job already picked up by worker) - mock_queue.job_ids = [] - - # Mock Redis response with QUEUED status (worker hasn't updated it yet) - import json - from datetime import datetime, timezone - from unittest.mock import patch - - execution_data = { - "workflow_name": "test_workflow", - "execution_id": execution_id, - "status": "queued", # Still queued in Redis - "start_time": datetime.now(timezone.utc).isoformat(), - "metadata": {}, - } - mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) - - # Patch the inference_queue for get_queue_position to use - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") - - assert response.status_code == 200 - data = response.json() - - # Should be treated as RUNNING since job is not in queue - assert data["status"] == "running" - # Position should be None for running status - if "position" in data: - assert data["position"] is None - - def test_get_workflow_status_no_position_when_running(self, client): - """Test that position is None when workflow is running (not queued)""" - test_client, mock_queue, mock_redis = client - - execution_id = "exec_789" - - # Mock Redis response for running execution - import json - from datetime import datetime, timezone - - execution_data = { - "workflow_name": "test_workflow", - "execution_id": execution_id, - "status": "running", - "start_time": datetime.now(timezone.utc).isoformat(), - "metadata": {}, - } - mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) - - response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") - - assert response.status_code == 200 - data = response.json() - - # Position should be None or not included for non-queued status - # (The model allows None, so it could be None or absent) - if "position" in data: - assert data["position"] is None - assert data["status"] == "running" - - def test_get_workflow_status_no_position_when_completed(self, client): - """Test that position is None when workflow is completed""" - test_client, mock_queue, mock_redis = client - - execution_id = "exec_999" - - # Mock Redis response for completed execution - import json - from datetime import datetime, timezone - - execution_data = { - "workflow_name": "test_workflow", - "execution_id": execution_id, - "status": "completed", - "start_time": datetime.now(timezone.utc).isoformat(), - "end_time": datetime.now(timezone.utc).isoformat(), - "metadata": {}, - } - mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) - - response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") - - assert response.status_code == 200 - data = response.json() - - # Position should be None for completed workflows - if "position" in data: - assert data["position"] is None - assert data["status"] == "completed" - - -class TestHealthAndProbes: - """Tests for /health, /readiness, /liveness, and /metrics endpoints.""" - - @pytest.fixture - def client_with_mocks(self): - """Client with mocked Redis and RQ for probe endpoints.""" - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue"), - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_redis.return_value = mock_async_instance - - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - - from earth2studio.serve.server.main import app - - with TestClient(app, raise_server_exceptions=False) as c: - yield c - - def test_liveness_returns_alive(self, client_with_mocks): - """GET /liveness returns status alive.""" - response = client_with_mocks.get("/liveness") - assert response.status_code == 200 - assert response.json() == {"status": "alive"} - - def test_health_healthy_when_script_returns_zero(self, client_with_mocks): - """GET /health and /readiness return healthy when status script exits 0.""" - with patch( - "earth2studio.serve.server.main.asyncio.create_subprocess_exec" - ) as mock_exec: - mock_proc = MagicMock() - mock_proc.returncode = 0 - mock_proc.communicate = AsyncMock(return_value=(b"", b"")) - mock_exec.return_value = mock_proc - - for path in ("/health", "/readiness"): - response = client_with_mocks.get(path) - assert response.status_code == 200 - data = response.json() - assert data["status"] == "healthy" - assert "timestamp" in data - - def test_health_unhealthy_when_script_returns_nonzero(self, client_with_mocks): - """GET /health returns 503 when status script exits non-zero.""" - with patch( - "earth2studio.serve.server.main.asyncio.create_subprocess_exec" - ) as mock_exec: - mock_proc = MagicMock() - mock_proc.returncode = 1 - mock_proc.communicate = AsyncMock(return_value=(b"", b"stderr")) - mock_exec.return_value = mock_proc - - response = client_with_mocks.get("/health") - assert response.status_code == 503 - data = response.json() - assert data["detail"]["status"] == "unhealthy" - - def test_metrics_returns_prometheus_format(self, client_with_mocks): - """GET /metrics returns Prometheus text format.""" - with patch("earth2studio.serve.server.main.generate_latest") as mock_gen: - mock_gen.return_value = ( - b"# HELP mock_metric Mock\n# TYPE mock_metric gauge\nmock_metric 1.0\n" - ) - - response = client_with_mocks.get("/metrics") - assert response.status_code == 200 - assert "mock_metric" in response.text - assert "text/plain" in response.headers.get("content-type", "") - - -class TestListWorkflows: - """Tests for GET /v1/workflows and /v1/infer/workflows.""" - - @pytest.fixture - def client_with_workflows(self): - """Client with a registered workflow for list_workflows.""" - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue"), - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_redis.return_value = mock_async_instance - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - - from earth2studio.serve.server.main import app - from earth2studio.serve.server.workflow import workflow_registry - - class FakeWorkflow: - name = "fake_wf" - description = "Fake workflow for list test" - - workflow_registry._workflows["fake_wf"] = FakeWorkflow - - with TestClient(app, raise_server_exceptions=False) as c: - yield c - - if "fake_wf" in workflow_registry._workflows: - del workflow_registry._workflows["fake_wf"] - - def test_list_workflows_returns_registry(self, client_with_workflows): - """GET /v1/workflows returns workflows dict.""" - response = client_with_workflows.get("/v1/workflows") - assert response.status_code == 200 - data = response.json() - assert "workflows" in data - assert "fake_wf" in data["workflows"] - assert data["workflows"]["fake_wf"] == "Fake workflow for list test" - - def test_list_workflows_infer_path(self, client_with_workflows): - """GET /v1/infer/workflows returns same structure.""" - response = client_with_workflows.get("/v1/infer/workflows") - assert response.status_code == 200 - data = response.json() - assert "workflows" in data - - -class TestAdmissionControl: - """Tests for check_admission_control (queue full, Redis None).""" - - @pytest.fixture - def client_for_admission(self): - """Client with mocked queue and redis for admission tests.""" - from earth2studio.serve.server.workflow import Workflow, WorkflowParameters - - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue") as mock_queue_class, - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_redis.return_value = mock_async_instance - - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.llen = MagicMock(return_value=0) - mock_sync_redis.return_value = mock_sync_instance - - mock_queue = MagicMock() - mock_queue.enqueue = MagicMock(return_value=MagicMock(id="job_1")) - mock_queue_class.return_value = mock_queue - - class AdmitParams(WorkflowParameters): - x: int = Field(default=1, ge=0) - - class AdmitWorkflow(Workflow): - name = "admit_wf" - description = "For admission test" - Parameters = AdmitParams - - @classmethod - def validate_parameters( - cls, parameters: dict[str, Any] | AdmitParams - ) -> AdmitParams: - return AdmitParams.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "ok"} - - from earth2studio.serve.server.main import app - from earth2studio.serve.server.workflow import workflow_registry - - workflow_registry._workflows["admit_wf"] = AdmitWorkflow - - with TestClient(app, raise_server_exceptions=False) as c: - yield c, mock_sync_instance, mock_queue - - if "admit_wf" in workflow_registry._workflows: - del workflow_registry._workflows["admit_wf"] - - def test_admission_control_redis_none_returns_503(self, client_for_admission): - """When redis_sync_client is None, execute returns 503.""" - client, mock_sync_redis, mock_queue = client_for_admission - with patch("earth2studio.serve.server.main.redis_sync_client", None): - response = client.post( - "/v1/infer/admit_wf", - json={"parameters": {}}, - ) - assert response.status_code == 503 - assert "Redis" in response.json().get("detail", "") - - def test_admission_control_queue_full_returns_429(self, client_for_admission): - """When queue is full, execute returns 429.""" - client, mock_sync_redis, mock_queue = client_for_admission - mock_sync_redis.llen.return_value = 100 - with patch("earth2studio.serve.server.main.config") as mock_config: - mock_config.queue.max_size = 10 - mock_config.queue.name = "inference" - mock_config.queue.result_zip_queue_name = "result_zip" - mock_config.queue.object_storage_queue_name = "object_storage" - mock_config.queue.finalize_metadata_queue_name = "finalize_metadata" - response = client.post( - "/v1/infer/admit_wf", - json={"parameters": {}}, - ) - assert response.status_code == 429 - assert "full" in response.json().get("detail", "").lower() - - def test_admission_control_llen_raises_returns_500(self, client_for_admission): - """When redis_sync_client.llen raises, execute returns 500.""" - client, mock_sync_redis, mock_queue = client_for_admission - mock_sync_redis.llen.side_effect = RuntimeError("Redis connection lost") - response = client.post( - "/v1/infer/admit_wf", - json={"parameters": {}}, - ) - assert response.status_code == 500 - assert "queue" in response.json().get("detail", "").lower() - - -class TestExecuteWorkflowBranches: - """Tests for execute_workflow branches (404, 400, 503, 500).""" - - @pytest.fixture - def client_exec(self): - """Client with one workflow for execute tests.""" - from earth2studio.serve.server.workflow import Workflow, WorkflowParameters - - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue") as mock_queue_class, - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_instance.get = AsyncMock(return_value=None) - mock_async_redis.return_value = mock_async_instance - - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_instance.setex = MagicMock() - mock_sync_instance.llen = MagicMock(return_value=0) - mock_sync_redis.return_value = mock_sync_instance - - mock_queue = MagicMock() - mock_job = MagicMock() - mock_job.id = "exec_wf_exec_123" - mock_queue.enqueue = MagicMock(return_value=mock_job) - mock_queue_class.return_value = mock_queue - - class ExecParams(WorkflowParameters): - x: int = Field(default=1, ge=0) - - class ExecWorkflow(Workflow): - name = "exec_wf" - description = "For execute tests" - Parameters = ExecParams - - @classmethod - def validate_parameters( - cls, parameters: dict[str, Any] | ExecParams - ) -> ExecParams: - return ExecParams.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "ok"} - - from earth2studio.serve.server.main import app - from earth2studio.serve.server.workflow import workflow_registry - - workflow_registry._workflows["exec_wf"] = ExecWorkflow - with TestClient(app, raise_server_exceptions=False) as c: - yield c, mock_sync_instance, mock_queue - if "exec_wf" in workflow_registry._workflows: - del workflow_registry._workflows["exec_wf"] - - def test_execute_workflow_not_found_404(self, client_exec): - """POST /v1/infer/{workflow_name} with unknown workflow returns 404.""" - client, _, _ = client_exec - response = client.post( - "/v1/infer/nonexistent_workflow", - json={"parameters": {}}, - ) - assert response.status_code == 404 - assert "not found" in response.json().get("detail", "").lower() - - def test_execute_workflow_validate_parameters_unexpected_error_400( - self, client_exec - ): - """When validate_parameters raises non-ValueError, returns 400.""" - client, _, _ = client_exec - with patch("earth2studio.serve.server.main.workflow_registry") as mock_registry: - mock_wf = MagicMock() - mock_wf.validate_parameters.side_effect = AttributeError("no model_dump") - mock_registry.get_workflow_class.return_value = mock_wf - response = client.post( - "/v1/infer/exec_wf", - json={"parameters": {"x": 1}}, - ) - assert response.status_code == 400 - assert "validating" in response.json().get("detail", "").lower() - - def test_execute_workflow_inference_queue_none_503(self, client_exec): - """When inference_queue is None, returns 503.""" - client, mock_redis, mock_queue = client_exec - with patch("earth2studio.serve.server.main.inference_queue", None): - response = client.post( - "/v1/infer/exec_wf", - json={"parameters": {}}, - ) - assert response.status_code == 503 - assert "queue" in response.json().get("detail", "").lower() - - def test_execute_workflow_llen_raises_after_enqueue_500(self, client_exec): - """When llen raises after enqueue (queue position lookup), returns 500.""" - client, mock_redis, mock_queue = client_exec - # First 4 calls: admission (4 queues); 5th: position lookup. Make 5th raise. - mock_redis.llen.side_effect = [0, 0, 0, 0, RuntimeError("redis error")] - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - response = client.post( - "/v1/infer/exec_wf", - json={"parameters": {}}, - ) - assert response.status_code == 500 - assert "queue position" in response.json().get( - "detail", "" - ).lower() or "Internal" in response.json().get("detail", "") - - def test_execute_workflow_enqueue_failure_500(self, client_exec): - """When enqueue raises, returns 500.""" - client, mock_redis, mock_queue = client_exec - mock_queue.enqueue.side_effect = RuntimeError("RQ enqueue failed") - with patch("earth2studio.serve.server.main.inference_queue", mock_queue): - response = client.post( - "/v1/infer/exec_wf", - json={"parameters": {}}, - ) - assert response.status_code == 500 - assert "enqueue" in response.json().get("detail", "").lower() - - -class TestHealthMetricsSchemaExceptions: - """Tests for health, metrics, and schema exception paths.""" - - @pytest.fixture - def client_probes(self): - """Client for probe endpoints.""" - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue"), - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_redis.return_value = mock_async_instance - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - from earth2studio.serve.server.main import app - - with TestClient(app, raise_server_exceptions=False) as c: - yield c - - def test_health_check_subprocess_exception_500(self, client_probes): - """When create_subprocess_exec raises, health returns 500.""" - with patch( - "earth2studio.serve.server.main.asyncio.create_subprocess_exec" - ) as mock_exec: - mock_exec.side_effect = FileNotFoundError("status.sh not found") - response = client_probes.get("/health") - assert response.status_code == 500 - assert "Health check failed" in response.json().get("detail", "") - - def test_metrics_generate_latest_raises_500(self, client_probes): - """When generate_latest raises, metrics returns 500.""" - with patch("earth2studio.serve.server.main.generate_latest") as mock_gen: - mock_gen.side_effect = RuntimeError("metrics error") - response = client_probes.get("/metrics") - assert response.status_code == 500 - detail = response.json().get("detail", {}) - if isinstance(detail, dict): - assert "metrics" in str(detail).lower() - else: - assert "metrics" in detail.lower() - - def test_schema_generation_exception_500(self, client_probes): - """When model_json_schema raises, schema endpoint returns 500.""" - from earth2studio.serve.server.workflow import Workflow, WorkflowParameters - - class BadSchemaParams(WorkflowParameters): - x: int = Field(default=1) - - class BadSchemaWorkflow(Workflow): - name = "bad_schema_wf" - description = "Bad schema" - Parameters = BadSchemaParams - - @classmethod - def validate_parameters(cls, parameters): - return BadSchemaParams.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "ok"} - - from earth2studio.serve.server.workflow import workflow_registry - - workflow_registry._workflows["bad_schema_wf"] = BadSchemaWorkflow - try: - with patch.object( - BadSchemaParams, - "model_json_schema", - side_effect=RuntimeError("schema error"), - ): - response = client_probes.get("/v1/workflows/bad_schema_wf/schema") - assert response.status_code == 500 - detail = response.json().get("detail", {}) - assert "schema" in str(detail).lower() - finally: - if "bad_schema_wf" in workflow_registry._workflows: - del workflow_registry._workflows["bad_schema_wf"] - - -class TestGetWorkflowStatusBranches: - """Tests for get_workflow_status branches (404 ValueError, 500 Exception).""" - - @pytest.fixture - def client_status(self): - """Client with workflow for status tests.""" - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue") as mock_queue_class, - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_instance.get = AsyncMock(return_value=None) - mock_async_redis.return_value = mock_async_instance - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - mock_queue_class.return_value = MagicMock() - - from earth2studio.serve.server.main import app - from earth2studio.serve.server.workflow import ( - Workflow, - WorkflowParameters, - workflow_registry, - ) - - class StatusParams(WorkflowParameters): - x: int = Field(default=1) - - class StatusWorkflow(Workflow): - name = "status_wf" - description = "Status test" - Parameters = StatusParams - - @classmethod - def validate_parameters(cls, parameters): - return StatusParams.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "ok"} - - workflow_registry._workflows["status_wf"] = StatusWorkflow - with TestClient(app, raise_server_exceptions=False) as c: - yield c, mock_sync_instance - if "status_wf" in workflow_registry._workflows: - del workflow_registry._workflows["status_wf"] - - def test_get_workflow_status_value_error_404(self, client_status): - """When _get_execution_data raises ValueError, returns 404.""" - client, mock_redis = client_status - with patch("earth2studio.serve.server.main.workflow_registry") as mock_registry: - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock( - side_effect=ValueError("Execution not found") - ) - mock_registry.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/status_wf/exec_123/status") - assert response.status_code == 404 - - def test_get_workflow_status_exception_500(self, client_status): - """When _get_execution_data raises Exception, returns 500.""" - client, mock_redis = client_status - with patch("earth2studio.serve.server.main.workflow_registry") as mock_registry: - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock( - side_effect=RuntimeError("Redis error") - ) - mock_registry.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/status_wf/exec_123/status") - assert response.status_code == 500 - assert "status" in response.json().get("detail", "").lower() - - -class TestGetWorkflowResultsBranches: - """Tests for get_workflow_results (EXPIRED, 202, FAILED, CANCELLED, 404, 200, 500).""" - - @pytest.fixture - def client_results(self, tmp_path): - """Client and tmp dir for results tests.""" - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue") as mock_queue_class, - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_instance.get = AsyncMock(return_value=None) - mock_async_redis.return_value = mock_async_instance - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - mock_queue_class.return_value = MagicMock() - - from earth2studio.serve.server.main import app - from earth2studio.serve.server.workflow import ( - Workflow, - WorkflowParameters, - WorkflowStatus, - workflow_registry, - ) - - class ResultsParams(WorkflowParameters): - x: int = Field(default=1) - - class ResultsWorkflow(Workflow): - name = "results_wf" - description = "Results test" - Parameters = ResultsParams - - @classmethod - def validate_parameters(cls, parameters): - return ResultsParams.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "ok"} - - workflow_registry._workflows["results_wf"] = ResultsWorkflow - with TestClient(app, raise_server_exceptions=False) as c: - yield c, mock_sync_instance, tmp_path, WorkflowStatus - if "results_wf" in workflow_registry._workflows: - del workflow_registry._workflows["results_wf"] - - def _make_execution_data(self, status, execution_id="exec_1"): - from earth2studio.serve.server.workflow import WorkflowResult - - return WorkflowResult( - workflow_name="results_wf", - execution_id=execution_id, - status=status, - start_time=datetime.now(timezone.utc).isoformat(), - end_time=( - datetime.now(timezone.utc).isoformat() - if status in ("completed", "failed", "expired", "cancelled") - else None - ), - error_message="failed" if status == "failed" else None, - ) - - def test_get_workflow_results_expired_400(self, client_results): - """When status is EXPIRED, returns 400.""" - client, mock_redis, _, WorkflowStatus = client_results - exec_data = self._make_execution_data(WorkflowStatus.EXPIRED) - mock_redis.get.return_value = json.dumps(exec_data.model_dump()).encode() - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/results_wf/exec_1/results") - assert response.status_code == 400 - assert "expired" in response.json().get("detail", {}).get("error", "").lower() - - def test_get_workflow_results_still_running_202(self, client_results): - """When status is RUNNING, returns 202.""" - client, mock_redis, _, WorkflowStatus = client_results - exec_data = self._make_execution_data(WorkflowStatus.RUNNING) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/results_wf/exec_1/results") - assert response.status_code == 202 - - def test_get_workflow_results_failed_404(self, client_results): - """When status is FAILED, returns 404.""" - client, mock_redis, _, WorkflowStatus = client_results - exec_data = self._make_execution_data(WorkflowStatus.FAILED) - exec_data.error_message = "Something failed" - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/results_wf/exec_1/results") - assert response.status_code == 404 - assert "failed" in response.json().get("detail", {}).get("error", "").lower() - - def test_get_workflow_results_cancelled_404(self, client_results): - """When status is CANCELLED, returns 404.""" - client, mock_redis, _, WorkflowStatus = client_results - exec_data = self._make_execution_data(WorkflowStatus.CANCELLED) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/results_wf/exec_1/results") - assert response.status_code == 404 - assert "cancelled" in response.json().get("detail", {}).get("error", "").lower() - - def test_get_workflow_results_metadata_not_found_404(self, client_results): - """When status is COMPLETED but metadata file missing, returns 404.""" - client, mock_redis, tmp_path, WorkflowStatus = client_results - exec_data = self._make_execution_data(WorkflowStatus.COMPLETED) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.RESULTS_ZIP_DIR", tmp_path): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/results_wf/exec_1/results") - assert response.status_code == 404 - assert "Metadata" in response.json().get("detail", {}).get("error", "") - - def test_get_workflow_results_success_200(self, client_results): - """When status is COMPLETED and metadata exists, returns 200 with JSON.""" - client, mock_redis, tmp_path, WorkflowStatus = client_results - exec_data = self._make_execution_data(WorkflowStatus.COMPLETED) - metadata_path = tmp_path / "metadata_results_wf:exec_1.json" - metadata_path.write_text( - json.dumps({"request_id": "results_wf:exec_1", "status": "completed"}) - ) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.RESULTS_ZIP_DIR", tmp_path): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/results_wf/exec_1/results") - assert response.status_code == 200 - assert response.json().get("request_id") == "results_wf:exec_1" - - def test_get_workflow_results_value_error_400(self, client_results): - """When _get_execution_data raises ValueError, returns 400.""" - client, _, _, _ = client_results - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock( - side_effect=ValueError("Invalid key") - ) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/results_wf/exec_1/results") - assert response.status_code == 400 - - def test_get_workflow_results_exception_500(self, client_results): - """When reading metadata raises, returns 500.""" - client, mock_redis, tmp_path, WorkflowStatus = client_results - exec_data = self._make_execution_data(WorkflowStatus.COMPLETED) - metadata_path = tmp_path / "metadata_results_wf:exec_1.json" - metadata_path.write_text("not valid json {{") - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.RESULTS_ZIP_DIR", tmp_path): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/results_wf/exec_1/results") - assert response.status_code == 500 - - -class TestGetWorkflowResultFileBranches: - """Tests for get_workflow_result_file (404, 503, 403, 400, 200).""" - - @pytest.fixture - def client_file(self, tmp_path): - """Client and tmp dir for result file tests.""" - with ( - patch("redis.asyncio.Redis") as mock_async_redis, - patch("redis.Redis") as mock_sync_redis, - patch("rq.Queue") as mock_queue_class, - patch("earth2studio.serve.server.workflow.register_all_workflows"), - ): - mock_async_instance = MagicMock() - mock_async_instance.ping = AsyncMock(return_value=True) - mock_async_instance.close = AsyncMock() - mock_async_instance.get = AsyncMock(return_value=None) - mock_async_redis.return_value = mock_async_instance - mock_sync_instance = MagicMock() - mock_sync_instance.ping = MagicMock(return_value=True) - mock_sync_instance.close = MagicMock() - mock_sync_redis.return_value = mock_sync_instance - mock_queue_class.return_value = MagicMock() - - from earth2studio.serve.server.main import app - from earth2studio.serve.server.workflow import ( - Workflow, - WorkflowParameters, - WorkflowStatus, - workflow_registry, - ) - - class FileParams(WorkflowParameters): - x: int = Field(default=1) - - class FileWorkflow(Workflow): - name = "file_wf" - description = "File test" - Parameters = FileParams - - @classmethod - def validate_parameters(cls, parameters): - return FileParams.validate(parameters) - - def run(self, parameters, execution_id): - return {"status": "ok"} - - workflow_registry._workflows["file_wf"] = FileWorkflow - with TestClient(app, raise_server_exceptions=False) as c: - yield c, mock_async_instance, mock_sync_instance, tmp_path, WorkflowStatus - if "file_wf" in workflow_registry._workflows: - del workflow_registry._workflows["file_wf"] - - def _exec_data(self, status=None): - from earth2studio.serve.server.workflow import ( - WorkflowResult, - WorkflowStatus, - ) - - if status is None: - status = WorkflowStatus.COMPLETED - return WorkflowResult( - workflow_name="file_wf", - execution_id="exec_1", - status=status, - start_time=datetime.now(timezone.utc).isoformat(), - end_time=datetime.now(timezone.utc).isoformat(), - ) - - def test_get_workflow_result_file_workflow_not_found_404(self, client_file): - """When workflow not in registry, returns 404.""" - client, *_ = client_file - response = client.get("/v1/infer/nonexistent_wf/exec_1/results/out.nc") - assert response.status_code == 404 - - def test_get_workflow_result_file_status_not_completed_404(self, client_file): - """When status is not COMPLETED, returns 404.""" - client, mock_async, mock_sync, _, WorkflowStatus = client_file - exec_data = self._exec_data(WorkflowStatus.RUNNING) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/file_wf/exec_1/results/out.nc") - assert response.status_code == 404 - assert ( - "not available" - in response.json().get("detail", {}).get("error", "").lower() - ) - - def test_get_workflow_result_file_redis_none_503(self, client_file): - """When redis_client (async) is None for file request, returns 503.""" - client, mock_async, mock_sync, _, WorkflowStatus = client_file - exec_data = self._exec_data() - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.redis_client", None): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/file_wf/exec_1/results/out.nc") - assert response.status_code == 503 - - def test_get_workflow_result_file_zip_not_in_redis_404(self, client_file): - """When filepath equals request_id but zip not in Redis, returns 404.""" - client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file - exec_data = self._exec_data() - mock_async.get = AsyncMock(return_value=None) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.redis_client", mock_async): - with patch("earth2studio.serve.server.main.RESULTS_ZIP_DIR", tmp_path): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get( - "/v1/infer/file_wf/exec_1/results/file_wf:exec_1" - ) - assert response.status_code == 404 - assert "Zip" in response.json().get("detail", {}).get("error", "") - - def test_get_workflow_result_file_output_dir_not_found_404(self, client_file): - """When output_path_key not in Redis, returns 404.""" - client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file - exec_data = self._exec_data() - mock_async.get = AsyncMock(return_value=None) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.redis_client", mock_async): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/file_wf/exec_1/results/somefile.txt") - assert response.status_code == 404 - assert "Output directory" in response.json().get("detail", {}).get("error", "") - - def test_get_workflow_result_file_path_traversal_403(self, client_file): - """When filepath escapes output dir, returns 403 (or 404 if path invalid).""" - client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file - exec_data = self._exec_data() - output_dir = tmp_path / "output" - output_dir.mkdir() - # Create a file inside output_dir; request it via path that escapes (..) - inner = output_dir / "inner.txt" - inner.write_text("data") - mock_async.get = AsyncMock(return_value=str(output_dir)) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.redis_client", mock_async): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - # Path ../output/inner.txt from output_dir resolves to output_dir/inner.txt - # Use path that clearly escapes: .. with resolved path outside - response = client.get( - "/v1/infer/file_wf/exec_1/results/..%2F..%2F..%2Fetc%2Fpasswd" - ) - # Path traversal must not succeed: either 403 (access denied) or 404 - assert response.status_code in (403, 404) - if response.status_code == 403: - assert "Access denied" in response.json().get("detail", {}).get("error", "") - - def test_get_workflow_result_file_not_found_404(self, client_file): - """When file does not exist in output dir, returns 404.""" - client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file - exec_data = self._exec_data() - output_dir = tmp_path / "output" - output_dir.mkdir() - mock_async.get = AsyncMock(return_value=str(output_dir)) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.redis_client", mock_async): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get( - "/v1/infer/file_wf/exec_1/results/nonexistent.txt" - ) - assert response.status_code == 404 - assert "File not found" in response.json().get("detail", {}).get("error", "") - - def test_get_workflow_result_file_not_a_file_400(self, client_file): - """When path is a directory, returns 400.""" - client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file - exec_data = self._exec_data() - output_dir = tmp_path / "output" - output_dir.mkdir() - subdir = output_dir / "subdir" - subdir.mkdir() - mock_async.get = AsyncMock(return_value=str(output_dir)) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.redis_client", mock_async): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/file_wf/exec_1/results/subdir") - assert response.status_code == 400 - assert "Not a file" in response.json().get("detail", {}).get("error", "") - - def test_get_workflow_result_file_stream_file_200(self, client_file): - """When file exists, returns 200 with streamed content.""" - client, mock_async, mock_sync, tmp_path, WorkflowStatus = client_file - exec_data = self._exec_data() - output_dir = tmp_path / "output" - output_dir.mkdir() - out_file = output_dir / "data.txt" - out_file.write_text("hello world") - mock_async.get = AsyncMock(return_value=str(output_dir)) - with patch("earth2studio.serve.server.main.workflow_registry") as mock_reg: - with patch("earth2studio.serve.server.main.redis_client", mock_async): - mock_wf = MagicMock() - mock_wf._get_execution_data = MagicMock(return_value=exec_data) - mock_reg.get_workflow_class.return_value = mock_wf - response = client.get("/v1/infer/file_wf/exec_1/results/data.txt") - assert response.status_code == 200 - assert response.text == "hello world" - - -class TestMainEntrypoint: - """Test main module entrypoint (covers line 1044).""" - - def test_main_entrypoint_calls_uvicorn(self): - """When run as __main__, uvicorn.run is called.""" - import runpy - - import earth2studio.serve.server.main as main_module - - with patch("uvicorn.run") as mock_run: - runpy.run_path(main_module.__file__, run_name="__main__") - mock_run.assert_called_once() - call = mock_run.call_args - # runpy re-executes the module so app is a new instance; check type and args - assert call[0][0].__class__.__name__ == "FastAPI" - assert call[1]["host"] == main_module.config.server.host - assert call[1]["port"] == main_module.config.server.port diff --git a/test/serve/server/test_utils.py b/test/serve/server/test_utils.py deleted file mode 100644 index 3e3b663ff..000000000 --- a/test/serve/server/test_utils.py +++ /dev/null @@ -1,266 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -from unittest.mock import MagicMock, patch - -from earth2studio.serve.server.utils import ( - get_inference_request_metadata_key, - get_inference_request_output_path_key, - get_inference_request_zip_key, - get_results_zip_dir_key, - get_signed_url_key, - queue_next_stage, -) - - -class TestRedisKeyFunctions: - """Tests for Redis key helper functions.""" - - def test_get_inference_request_zip_key(self): - """get_inference_request_zip_key returns expected key format.""" - assert get_inference_request_zip_key("req_1") == ( - "inference_request_zips:req_1:zip_file" - ) - - def test_get_inference_request_output_path_key(self): - """get_inference_request_output_path_key returns expected key format.""" - assert get_inference_request_output_path_key("req_1") == ( - "inference_request:req_1:output_path" - ) - - def test_get_inference_request_metadata_key(self): - """get_inference_request_metadata_key returns expected key format.""" - assert get_inference_request_metadata_key("req_1") == ( - "inference_request:req_1:pending_metadata" - ) - - def test_get_results_zip_dir_key(self): - """get_results_zip_dir_key returns expected key format.""" - assert get_results_zip_dir_key("req_1") == ( - "inference_request:req_1:results_zip_dir" - ) - - def test_get_signed_url_key(self): - """get_signed_url_key returns expected key format.""" - assert get_signed_url_key("req_1") == ("inference_request:req_1:signed_url") - - -class TestQueueNextStage: - """Tests for queue_next_stage.""" - - def test_unknown_stage_returns_none(self): - """Unknown current_stage logs error and returns None.""" - mock_redis = MagicMock() - result = queue_next_stage( - redis_client=mock_redis, - current_stage="unknown_stage", # type: ignore[arg-type] - workflow_name="wf", - execution_id="exec_1", - output_path_str="/path", - ) - assert result is None - - def test_inference_stage_queues_result_zip(self): - """current_stage=inference enqueues process_result_zip to result_zip queue.""" - mock_redis = MagicMock() - mock_config = MagicMock() - mock_config.paths.result_zip_enabled = True - mock_config.object_storage.enabled = False - mock_config.queue.result_zip_queue_name = "result_zip" - mock_config.queue.default_timeout = "1h" - mock_config.queue.job_timeout = "2h" - mock_job = MagicMock() - mock_job.id = "job_123" - mock_queue = MagicMock() - mock_queue.enqueue.return_value = mock_job - - with ( - patch( - "earth2studio.serve.server.utils.get_config", return_value=mock_config - ), - patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), - ): - result = queue_next_stage( - redis_client=mock_redis, - current_stage="inference", - workflow_name="wf", - execution_id="exec_1", - output_path_str="/out", - results_zip_dir_str="/zip", - ) - - assert result == "job_123" - mock_queue.enqueue.assert_called_once() - call_kw = mock_queue.enqueue.call_args - assert ( - call_kw[0][0] == "earth2studio.serve.server.cpu_worker.process_result_zip" - ) - assert call_kw[0][1:5] == ("wf", "exec_1", "/out", "/zip") - assert call_kw[0][5] is True # create_zip - - def test_inference_stage_create_zip_false_when_object_storage_enabled(self): - """When object_storage enabled, create_zip is False for inference stage.""" - mock_redis = MagicMock() - mock_config = MagicMock() - mock_config.paths.result_zip_enabled = True - mock_config.object_storage.enabled = True - mock_config.queue.result_zip_queue_name = "result_zip" - mock_config.queue.default_timeout = "1h" - mock_config.queue.job_timeout = "2h" - mock_job = MagicMock() - mock_job.id = "job_123" - mock_queue = MagicMock() - mock_queue.enqueue.return_value = mock_job - - with ( - patch( - "earth2studio.serve.server.utils.get_config", return_value=mock_config - ), - patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), - ): - queue_next_stage( - redis_client=mock_redis, - current_stage="inference", - workflow_name="wf", - execution_id="exec_1", - output_path_str="/out", - results_zip_dir_str="/zip", - ) - - assert mock_queue.enqueue.call_args[0][5] is False # create_zip - - def test_result_zip_stage_object_storage_enabled_queues_object_storage(self): - """current_stage=result_zip with object_storage enabled enqueues process_object_storage_upload.""" - mock_redis = MagicMock() - mock_config = MagicMock() - mock_config.object_storage.enabled = True - mock_config.queue.object_storage_queue_name = "object_storage" - mock_config.queue.default_timeout = "1h" - mock_config.queue.job_timeout = "2h" - mock_job = MagicMock() - mock_job.id = "job_456" - mock_queue = MagicMock() - mock_queue.enqueue.return_value = mock_job - - with ( - patch( - "earth2studio.serve.server.utils.get_config", return_value=mock_config - ), - patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), - ): - result = queue_next_stage( - redis_client=mock_redis, - current_stage="result_zip", - workflow_name="wf", - execution_id="exec_1", - output_path_str="/out", - ) - - assert result == "job_456" - mock_queue.enqueue.assert_called_once() - assert "process_object_storage_upload" in mock_queue.enqueue.call_args[0][0] - assert mock_queue.enqueue.call_args[0][1:4] == ("wf", "exec_1", "/out") - - def test_result_zip_stage_object_storage_disabled_queues_finalize_metadata(self): - """current_stage=result_zip with object_storage disabled enqueues process_finalize_metadata.""" - mock_redis = MagicMock() - mock_config = MagicMock() - mock_config.object_storage.enabled = False - mock_config.queue.finalize_metadata_queue_name = "finalize_metadata" - mock_config.queue.default_timeout = "1h" - mock_config.queue.job_timeout = "2h" - mock_job = MagicMock() - mock_job.id = "job_789" - mock_queue = MagicMock() - mock_queue.enqueue.return_value = mock_job - - with ( - patch( - "earth2studio.serve.server.utils.get_config", return_value=mock_config - ), - patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), - ): - result = queue_next_stage( - redis_client=mock_redis, - current_stage="result_zip", - workflow_name="wf", - execution_id="exec_1", - output_path_str="/out", - ) - - assert result == "job_789" - mock_queue.enqueue.assert_called_once() - assert "process_finalize_metadata" in mock_queue.enqueue.call_args[0][0] - assert mock_queue.enqueue.call_args[0][1:3] == ("wf", "exec_1") - - def test_object_storage_stage_queues_finalize_metadata(self): - """current_stage=object_storage enqueues process_finalize_metadata.""" - mock_redis = MagicMock() - mock_config = MagicMock() - mock_config.queue.finalize_metadata_queue_name = "finalize_metadata" - mock_config.queue.default_timeout = "1h" - mock_config.queue.job_timeout = "2h" - mock_job = MagicMock() - mock_job.id = "job_final" - mock_queue = MagicMock() - mock_queue.enqueue.return_value = mock_job - - with ( - patch( - "earth2studio.serve.server.utils.get_config", return_value=mock_config - ), - patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), - ): - result = queue_next_stage( - redis_client=mock_redis, - current_stage="object_storage", - workflow_name="wf", - execution_id="exec_1", - output_path_str="/out", - ) - - assert result == "job_final" - mock_queue.enqueue.assert_called_once() - assert "process_finalize_metadata" in mock_queue.enqueue.call_args[0][0] - - def test_enqueue_exception_returns_none(self): - """When Queue.enqueue raises, queue_next_stage returns None.""" - mock_redis = MagicMock() - mock_config = MagicMock() - mock_config.paths.result_zip_enabled = False - mock_config.object_storage.enabled = False - mock_config.queue.result_zip_queue_name = "result_zip" - mock_config.queue.default_timeout = "1h" - mock_config.queue.job_timeout = "2h" - mock_queue = MagicMock() - mock_queue.enqueue.side_effect = Exception("RQ error") - - with ( - patch( - "earth2studio.serve.server.utils.get_config", return_value=mock_config - ), - patch("earth2studio.serve.server.utils.Queue", return_value=mock_queue), - ): - result = queue_next_stage( - redis_client=mock_redis, - current_stage="inference", - workflow_name="wf", - execution_id="exec_1", - output_path_str="/out", - results_zip_dir_str="/zip", - ) - - assert result is None diff --git a/test/serve/server/test_worker.py b/test/serve/server/test_worker.py deleted file mode 100644 index f8b4e02b8..000000000 --- a/test/serve/server/test_worker.py +++ /dev/null @@ -1,241 +0,0 @@ -# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. -# SPDX-FileCopyrightText: All rights reserved. -# SPDX-License-Identifier: Apache-2.0 -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. - -import tempfile -from pathlib import Path -from unittest.mock import MagicMock, patch - -import pytest - -from earth2studio.serve.server.worker import get_output_path, run_custom_workflow - - -class TestGetOutputPath: - """Tests for get_output_path.""" - - def test_returns_path_with_default_backend_when_io_config_none(self): - """When io_config is None, backend_type defaults to zarr.""" - with tempfile.TemporaryDirectory() as tmpdir: - default_dir = Path(tmpdir) - with ( - patch( - "earth2studio.serve.server.worker.DEFAULT_OUTPUT_DIR", - default_dir, - ), - ): - out = get_output_path( - io_config=None, - timestamp="2024-01-01T12:00:00Z", - workflow_type="my_workflow", - request_id="req_123", - ) - assert out.suffix == ".zarr" - assert out.name == "forecast.zarr" - assert "my_workflow" in str(out) - assert "req_123" in str(out) - assert out.parent.exists() - - def test_uses_backend_type_from_io_config(self): - """When io_config has backend_type, output file uses that extension.""" - with tempfile.TemporaryDirectory() as tmpdir: - default_dir = Path(tmpdir) - with ( - patch( - "earth2studio.serve.server.worker.DEFAULT_OUTPUT_DIR", - default_dir, - ), - ): - out = get_output_path( - io_config={"backend_type": "netcdf4"}, - timestamp="2024-01-01T00:00:00", - workflow_type="wf", - request_id="r1", - ) - assert out.suffix == ".netcdf4" or "netcdf4" in out.name - assert out.name == "forecast.netcdf4" - - def test_normalizes_timestamp_in_path(self): - """Timestamp is normalized (colons, Z, + removed) in directory name.""" - with tempfile.TemporaryDirectory() as tmpdir: - default_dir = Path(tmpdir) - with ( - patch( - "earth2studio.serve.server.worker.DEFAULT_OUTPUT_DIR", - default_dir, - ), - ): - out = get_output_path( - io_config=None, - timestamp="2024-01-01T12:00:00+00:00", - workflow_type="w", - request_id="r", - ) - # Directory should not contain : or + or Z - dir_name = out.parent.name - assert ":" not in dir_name - assert "Z" not in dir_name - assert "+" not in dir_name - - -class TestRunCustomWorkflow: - """Tests for run_custom_workflow.""" - - def test_raises_value_error_when_workflow_not_in_registry(self): - """Raises ValueError when workflow name is not registered.""" - with patch( - "earth2studio.serve.server.worker.workflow_registry" - ) as mock_registry: - mock_registry.get_workflow_class.return_value = None - - with pytest.raises(ValueError, match="not found in registry"): - run_custom_workflow( - workflow_name="nonexistent", - execution_id="exec_1", - parameters={}, - ) - - def test_raises_value_error_when_workflow_cannot_be_instantiated(self): - """Raises ValueError when registry.get returns None (instantiation failed).""" - with patch( - "earth2studio.serve.server.worker.workflow_registry" - ) as mock_registry: - mock_registry.get_workflow_class.return_value = MagicMock() - mock_registry.get.return_value = None - - with pytest.raises(ValueError, match="could not be instantiated"): - run_custom_workflow( - workflow_name="my_workflow", - execution_id="exec_1", - parameters={}, - ) - - def test_success_returns_result_and_queues_next_stage(self): - """On success, returns workflow result and queue_next_stage is called.""" - mock_workflow_class = MagicMock() - mock_workflow = MagicMock() - mock_workflow.run.return_value = {"result": "ok"} - with tempfile.TemporaryDirectory() as tmpdir: - safe_out = Path(tmpdir) / "out" - safe_results_zip = Path(tmpdir) / "results_zip" - mock_workflow.get_output_path.return_value = safe_out - - with ( - patch( - "earth2studio.serve.server.worker.workflow_registry" - ) as mock_registry, - patch( - "earth2studio.serve.server.worker.redis_client", - MagicMock(), - ), - patch( - "earth2studio.serve.server.worker.queue_next_stage", - return_value="job_123", - ) as mock_queue, - patch( - "earth2studio.serve.server.worker.RESULTS_ZIP_DIR", - safe_results_zip, - ), - ): - mock_registry.get_workflow_class.return_value = mock_workflow_class - mock_registry.get.return_value = mock_workflow - - result = run_custom_workflow( - workflow_name="my_workflow", - execution_id="exec_1", - parameters={"key": "value"}, - ) - - assert result == {"result": "ok"} - mock_workflow.run.assert_called_once_with({"key": "value"}, "exec_1") - mock_queue.assert_called_once() - call_kw = mock_queue.call_args[1] - assert call_kw["workflow_name"] == "my_workflow" - assert call_kw["execution_id"] == "exec_1" - assert call_kw["current_stage"] == "inference" - - def test_raises_runtime_error_when_queue_next_stage_fails(self): - """When queue_next_stage returns None, raises RuntimeError and updates status.""" - mock_workflow_class = MagicMock() - mock_workflow = MagicMock() - mock_workflow.run.return_value = {} - with tempfile.TemporaryDirectory() as tmpdir: - safe_out = Path(tmpdir) / "out" - safe_results_zip = Path(tmpdir) / "results_zip" - mock_workflow.get_output_path.return_value = safe_out - - with ( - patch( - "earth2studio.serve.server.worker.workflow_registry" - ) as mock_registry, - patch( - "earth2studio.serve.server.worker.redis_client", - MagicMock(), - ), - patch( - "earth2studio.serve.server.worker.queue_next_stage", - return_value=None, - ), - patch( - "earth2studio.serve.server.worker.RESULTS_ZIP_DIR", - safe_results_zip, - ), - ): - mock_registry.get_workflow_class.return_value = mock_workflow_class - mock_registry.get.return_value = mock_workflow - - with pytest.raises(RuntimeError, match="Failed to queue next pipeline"): - run_custom_workflow( - workflow_name="my_workflow", - execution_id="exec_1", - parameters={}, - ) - - # Status should have been updated to FAILED - mock_workflow_class._update_execution_data.assert_called() - calls = mock_workflow_class._update_execution_data.call_args_list - # Last call before raise is the one with status FAILED - fail_calls = [c for c in calls if c[0][3].get("status") == "failed"] - assert len(fail_calls) >= 1 - - def test_on_run_exception_updates_status_and_reraises(self): - """When workflow.run raises, status is updated to FAILED and exception is re-raised.""" - mock_workflow_class = MagicMock() - mock_workflow = MagicMock() - mock_workflow.run.side_effect = ValueError("run failed") - - with ( - patch( - "earth2studio.serve.server.worker.workflow_registry" - ) as mock_registry, - patch( - "earth2studio.serve.server.worker.redis_client", - MagicMock(), - ), - ): - mock_registry.get_workflow_class.return_value = mock_workflow_class - mock_registry.get.return_value = mock_workflow - - with pytest.raises(ValueError, match="run failed"): - run_custom_workflow( - workflow_name="my_workflow", - execution_id="exec_1", - parameters={}, - ) - - mock_workflow_class._update_execution_data.assert_called() - calls = mock_workflow_class._update_execution_data.call_args_list - fail_updates = [c for c in calls if c[0][3].get("status") == "failed"] - assert len(fail_updates) >= 1 diff --git a/test/serve/test_cleanup_daemon.py b/test/serve/test_cleanup_daemon.py new file mode 100644 index 000000000..e25cc9944 --- /dev/null +++ b/test/serve/test_cleanup_daemon.py @@ -0,0 +1,502 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +""" +Unit tests for the cleanup daemon. + +This module tests the cleanup daemon functionality with mocked Redis and filesystem operations. +""" + +import json +from datetime import datetime, timedelta, timezone +from unittest.mock import MagicMock, patch + +import pytest +from api_server.cleanup_daemon import ( + _delete_result_files, + _process_expired_key, + cleanup_expired_results, +) +from api_server.config import get_config +from api_server.workflow import WorkflowStatus + + +class TestDeleteResultFiles: + """Test suite for _delete_result_files function""" + + @pytest.fixture + def mock_redis(self): + """Create a mock Redis client""" + return MagicMock() + + def test_delete_workflow_files_with_workflow_name(self, mock_redis): + """Test deletion of workflow execution files including workflow-specific directories and metadata""" + # Setup + workflow_name = "custom_workflow" + execution_id = "exec_456" + combined_id = f"{workflow_name}:{execution_id}" + zip_filename = f"workflow_{combined_id}.zip" + + mock_redis.get.return_value = zip_filename + + # Mock zip file + mock_zip_file = MagicMock() + mock_zip_file.exists.return_value = True + mock_zip_file.unlink = MagicMock() + + # Mock metadata file for workflow + mock_metadata_file = MagicMock() + mock_metadata_file.is_file.return_value = True + mock_metadata_file.is_dir.return_value = False + mock_metadata_file.name = f"metadata_{combined_id}.json" + mock_metadata_file.unlink = MagicMock() + + # Mock workflow directory + mock_workflow_dir = MagicMock() + mock_workflow_dir.exists.return_value = True + + mock_workflow_subdir = MagicMock() + mock_workflow_subdir.is_dir.return_value = True + mock_workflow_subdir.is_file.return_value = False + mock_workflow_subdir.name = f"output_{execution_id}" + + mock_workflow_dir.iterdir.return_value = [mock_workflow_subdir] + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_output_dir.__truediv__ = lambda self, other: mock_workflow_dir + + mock_zip_dir = MagicMock() + mock_zip_dir.__truediv__ = lambda self, other: mock_zip_file + mock_zip_dir.iterdir.return_value = [mock_metadata_file] + + with ( + patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), + patch( + "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", + mock_output_dir, + ), + patch("api_server.cleanup_daemon.shutil.rmtree") as mock_rmtree, + ): + # Execute + _delete_result_files( + mock_redis, combined_id, execution_id, workflow_name=workflow_name + ) + + # Verify zip file deleted + mock_zip_file.unlink.assert_called_once() + + # Verify metadata file deleted + mock_metadata_file.unlink.assert_called_once() + + # Verify workflow-specific directory deleted + mock_rmtree.assert_called_once_with(mock_workflow_subdir) + + def test_delete_files_no_zip_in_redis(self, mock_redis): + """Test deletion when no zip file is found in Redis""" + # Setup + result_id = "result_789" + mock_redis.get.return_value = None + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + + with ( + patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), + patch( + "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", + mock_output_dir, + ), + ): + # Execute - should not raise exception + _delete_result_files(mock_redis, result_id, result_id) + + # Verify Redis was queried + mock_redis.get.assert_called_once() + + +class TestProcessExpiredKey: + """Test suite for _process_expired_key function""" + + @pytest.fixture + def mock_redis(self): + """Create a mock Redis client""" + return MagicMock() + + @pytest.fixture + def mock_delete_func(self): + """Create a mock delete function""" + return MagicMock() + + def test_process_expired_key_success(self, mock_redis, mock_delete_func): + """Test successful processing of an expired key""" + # Setup + key = "workflow_execution:wf1:exec_123" + current_time = datetime.now(timezone.utc) + old_time = current_time - timedelta(hours=25) # 25 hours ago + results_ttl_hours = 24 + + request_data = { + "status": WorkflowStatus.COMPLETED, + "end_time": old_time.isoformat(), + "execution_id": "exec_123", + } + + mock_redis.get.return_value = json.dumps(request_data) + config = get_config() + + # Execute + result = _process_expired_key( + redis_client=mock_redis, + key=key, + current_time=current_time, + results_ttl_hours=results_ttl_hours, + expected_status=WorkflowStatus.COMPLETED, + get_end_time_field="end_time", + delete_files_func=mock_delete_func, + log_prefix="workflow", + ) + + # Verify + assert result is True + mock_delete_func.assert_called_once_with(mock_redis, key) + mock_redis.setex.assert_called_once() + args = mock_redis.setex.call_args[0] + assert args[0] == key + assert args[1] == config.redis.retention_ttl + updated_data = json.loads(args[2]) + assert updated_data["status"] == WorkflowStatus.EXPIRED + + def test_process_expired_key_not_expired(self, mock_redis, mock_delete_func): + """Test processing of a key that is not yet expired""" + # Setup + key = "workflow_execution:wf1:exec_456" + current_time = datetime.now(timezone.utc) + recent_time = current_time - timedelta(hours=12) # 12 hours ago + results_ttl_hours = 24 + + request_data = { + "status": WorkflowStatus.COMPLETED, + "end_time": recent_time.isoformat(), + "execution_id": "exec_456", + } + + mock_redis.get.return_value = json.dumps(request_data) + + # Execute + result = _process_expired_key( + redis_client=mock_redis, + key=key, + current_time=current_time, + results_ttl_hours=results_ttl_hours, + expected_status=WorkflowStatus.COMPLETED, + get_end_time_field="end_time", + delete_files_func=mock_delete_func, + log_prefix="workflow", + ) + + # Verify - should not clean up + assert result is False + mock_delete_func.assert_not_called() + mock_redis.setex.assert_not_called() + + +class TestCleanupExpiredResults: + """Test suite for cleanup_expired_results function""" + + @pytest.fixture + def mock_redis(self): + """Create a mock Redis client""" + return MagicMock() + + @pytest.fixture + def mock_config(self): + """Mock the config""" + with patch("api_server.cleanup_daemon.config") as mock_cfg: + mock_cfg.server.results_ttl_hours = 24 + mock_cfg.redis.retention_ttl = 604800 + yield mock_cfg + + def test_cleanup_expired_results_workflow_only(self, mock_redis, mock_config): + """Test cleanup with workflow executions only""" + # Setup + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + recent_time = (current_time - timedelta(hours=12)).isoformat() + + # Mock Redis keys - only workflow keys + mock_redis.keys.return_value = [ + "workflow_execution:wf1:exec_old", + "workflow_execution:wf2:exec_recent", + ] + + # Mock Redis get responses + def get_side_effect(key): + if key == "workflow_execution:wf1:exec_old": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": old_time} + ) + elif key == "workflow_execution:wf2:exec_recent": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": recent_time} + ) + return None + + mock_redis.get.side_effect = get_side_effect + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_output_dir.__truediv__ = lambda self, other: MagicMock( + exists=lambda: False + ) + + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + + with ( + patch("api_server.cleanup_daemon._delete_result_files"), + patch( + "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", + mock_output_dir, + ), + patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), + ): + # Execute + cleanup_expired_results(mock_redis) + + # Verify - should process 1 workflow (exec_old), skip exec_recent + assert mock_redis.setex.call_count == 1 + + # Verify the expired key was updated + setex_calls = mock_redis.setex.call_args_list + expired_keys = [call[0][0] for call in setex_calls] + assert "workflow_execution:wf1:exec_old" in expired_keys + + def test_cleanup_expired_results_no_keys(self, mock_redis, mock_config): + """Test cleanup when there are no keys in Redis""" + # Setup + mock_redis.keys.return_value = [] + + # Execute + cleanup_expired_results(mock_redis) + + # Verify - no cleanup operations + mock_redis.setex.assert_not_called() + + def test_cleanup_expired_results_all_recent(self, mock_redis, mock_config): + """Test cleanup when all workflow keys are recent (not expired)""" + # Setup + current_time = datetime.now(timezone.utc) + recent_time = (current_time - timedelta(hours=5)).isoformat() + + mock_redis.keys.return_value = [ + "workflow_execution:wf1:exec_1", + "workflow_execution:wf2:exec_2", + ] + + mock_redis.get.return_value = json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": recent_time} + ) + + # Execute + cleanup_expired_results(mock_redis) + + # Verify - no cleanup operations (not expired) + mock_redis.setex.assert_not_called() + + def test_cleanup_expired_results_redis_get_failure(self, mock_redis, mock_config): + """Test cleanup handles Redis get failures gracefully""" + # Setup + mock_redis.keys.return_value = [ + "workflow_execution:wf_fail:exec_1", + "workflow_execution:wf_ok:exec_2", + ] + + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + + # First key causes exception, second succeeds + def get_side_effect(key): + if key == "workflow_execution:wf_fail:exec_1": + raise Exception("Redis connection error") + elif key == "workflow_execution:wf_ok:exec_2": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": old_time} + ) + return None + + mock_redis.get.side_effect = get_side_effect + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_output_dir.__truediv__ = lambda self, other: MagicMock( + exists=lambda: False + ) + + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + + with ( + patch("api_server.cleanup_daemon._delete_result_files"), + patch( + "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", + mock_output_dir, + ), + patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), + ): + # Execute - should not raise exception + cleanup_expired_results(mock_redis) + + # Verify - exec_2 should still be processed despite exec_1 error + assert mock_redis.setex.call_count == 1 + assert mock_redis.setex.call_args[0][0] == "workflow_execution:wf_ok:exec_2" + + def test_cleanup_expired_results_delete_files_failure( + self, mock_redis, mock_config + ): + """Test cleanup handles file deletion failures gracefully and does not mark as expired""" + # Setup + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + + mock_redis.keys.return_value = ["workflow_execution:wf_fail:exec_fail"] + + mock_redis.get.return_value = json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": old_time} + ) + + with patch("api_server.cleanup_daemon._delete_result_files") as mock_delete: + mock_delete.side_effect = Exception("File deletion error") + + # Execute - should handle exception and continue + cleanup_expired_results(mock_redis) + + # Verify delete was attempted + mock_delete.assert_called_once() + + # Status should NOT be updated if file deletion fails + # (we want to retry cleanup on next run) + assert mock_redis.setex.call_count == 0 + + def test_cleanup_expired_results_workflow_execution(self, mock_redis, mock_config): + """Test cleanup of workflow execution keys""" + # Setup + current_time = datetime.now(timezone.utc) + old_time = (current_time - timedelta(hours=30)).isoformat() + + mock_redis.keys.return_value = ["workflow_execution:my_workflow:exec_123"] + + mock_redis.get.return_value = json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": old_time} + ) + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_output_dir.__truediv__ = lambda self, other: MagicMock( + exists=lambda: False + ) + + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + + with ( + patch("api_server.cleanup_daemon._delete_result_files") as mock_delete, + patch( + "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", + mock_output_dir, + ), + patch("api_server.cleanup_daemon.RESULTS_ZIP_DIR", mock_zip_dir), + ): + # Execute + cleanup_expired_results(mock_redis) + + # Verify workflow was cleaned up + assert mock_redis.setex.call_count == 1 + assert ( + mock_redis.setex.call_args[0][0] + == "workflow_execution:my_workflow:exec_123" + ) + + # Verify delete was called with correct parameters + mock_delete.assert_called_once() + call_args = mock_delete.call_args + assert call_args[1]["result_id"] == "my_workflow:exec_123" + assert call_args[1]["search_id"] == "exec_123" + assert call_args[1]["workflow_name"] == "my_workflow" + + def test_cleanup_expired_results_custom_ttl_config(self, mock_redis): + """Test cleanup with custom TTL configuration""" + # Setup custom config + with patch("api_server.cleanup_daemon.config") as mock_cfg: + mock_cfg.server.results_ttl_hours = 48 # Custom 48 hour TTL + mock_cfg.redis.retention_ttl = 604800 + + current_time = datetime.now(timezone.utc) + # 30 hours ago - should NOT be expired with 48 hour TTL + time_30h_ago = (current_time - timedelta(hours=30)).isoformat() + # 50 hours ago - should be expired with 48 hour TTL + time_50h_ago = (current_time - timedelta(hours=50)).isoformat() + + mock_redis.keys.return_value = [ + "workflow_execution:wf_30h:exec_30h", + "workflow_execution:wf_50h:exec_50h", + ] + + def get_side_effect(key): + if key == "workflow_execution:wf_30h:exec_30h": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": time_30h_ago} + ) + elif key == "workflow_execution:wf_50h:exec_50h": + return json.dumps( + {"status": WorkflowStatus.COMPLETED, "end_time": time_50h_ago} + ) + return None + + mock_redis.get.side_effect = get_side_effect + + mock_output_dir = MagicMock() + mock_output_dir.iterdir.return_value = [] + mock_output_dir.__truediv__ = lambda self, other: MagicMock( + exists=lambda: False + ) + + mock_zip_dir = MagicMock() + mock_zip_dir.iterdir.return_value = [] + + with ( + patch("api_server.cleanup_daemon._delete_result_files"), + patch( + "api_server.cleanup_daemon.DEFAULT_OUTPUT_DIR", + mock_output_dir, + ), + patch( + "api_server.cleanup_daemon.RESULTS_ZIP_DIR", + mock_zip_dir, + ), + ): + # Execute + cleanup_expired_results(mock_redis) + + # Verify - only exec_50h should be cleaned up + assert mock_redis.setex.call_count == 1 + assert ( + mock_redis.setex.call_args[0][0] + == "workflow_execution:wf_50h:exec_50h" + ) diff --git a/test/serve/server/test_config.py b/test/serve/test_config.py similarity index 96% rename from test/serve/server/test_config.py rename to test/serve/test_config.py index 854b1c248..9dd7e40a5 100644 --- a/test/serve/server/test_config.py +++ b/test/serve/test_config.py @@ -14,6 +14,12 @@ # See the License for the specific language governing permissions and # limitations under the License. +""" +Unit tests for api_server.config module. + +Tests configuration management, environment variable overrides, and singleton behavior. +""" + import logging import os import sys @@ -42,8 +48,8 @@ mock_omegaconf.OmegaConf.to_container = MagicMock(return_value={}) # Import config after mocking dependencies (noqa: E402 - import after mocks is intentional) -# Note: serve/server path is added by conftest.py -from earth2studio.serve.server.config import ( # noqa: E402 +# Note: service/inferenceserver path is added by conftest.py +from api_server.config import ( # noqa: E402 AppConfig, ConfigManager, CORSConfig, @@ -177,7 +183,7 @@ def test_reset_config_creates_new_instance(self) -> None: # Reset clears the global reset_config() # Manually clear the instance to verify reset worked - from earth2studio.serve.server.config import ConfigManager + from api_server.config import ConfigManager old_instance = ConfigManager._instance ConfigManager._instance = None @@ -189,9 +195,9 @@ def test_reset_config_creates_new_instance(self) -> None: class TestConfigManagerInitialization: """Test ConfigManager initialization and fallback behavior""" - @patch("earth2studio.serve.server.config.initialize_config_dir") - @patch("earth2studio.serve.server.config.compose") - @patch("earth2studio.serve.server.config.GlobalHydra") + @patch("api_server.config.initialize_config_dir") + @patch("api_server.config.compose") + @patch("api_server.config.GlobalHydra") def test_initialize_config_success( self, mock_global_hydra: MagicMock, @@ -207,7 +213,7 @@ def test_initialize_config_success( mock_compose.side_effect = [mock_cfg, mock_workflow_cfg] # Mock OmegaConf.to_container - with patch("earth2studio.serve.server.config.OmegaConf") as mock_omega: + with patch("api_server.config.OmegaConf") as mock_omega: mock_omega.to_container.side_effect = [ {"redis": {"host": "test_host"}}, {"workflow1": {}}, @@ -219,8 +225,8 @@ def test_initialize_config_success( assert config is not None assert isinstance(config, AppConfig) - @patch("earth2studio.serve.server.config.initialize_config_dir") - @patch("earth2studio.serve.server.config.compose") + @patch("api_server.config.initialize_config_dir") + @patch("api_server.config.compose") def test_initialize_config_fallback_to_defaults( self, mock_compose: MagicMock, mock_init: MagicMock ) -> None: @@ -515,8 +521,8 @@ def test_setup_logging_adds_execution_id_filter(self) -> None: class TestGetWorkflowConfig: """Test get_workflow_config function""" - @patch("earth2studio.serve.server.config.initialize_config_dir") - @patch("earth2studio.serve.server.config.compose") + @patch("api_server.config.initialize_config_dir") + @patch("api_server.config.compose") def test_get_workflow_config_returns_dict( self, mock_compose: MagicMock, mock_init: MagicMock ) -> None: @@ -526,7 +532,7 @@ def test_get_workflow_config_returns_dict( mock_workflow_cfg = MagicMock() mock_compose.side_effect = [MagicMock(), mock_workflow_cfg] - with patch("earth2studio.serve.server.config.OmegaConf") as mock_omega: + with patch("api_server.config.OmegaConf") as mock_omega: mock_omega.to_container.side_effect = [ {}, # config {"test_workflow": {"param": "value"}}, # workflow_config diff --git a/test/serve/test_cpu_worker.py b/test/serve/test_cpu_worker.py new file mode 100644 index 000000000..f29836e26 --- /dev/null +++ b/test/serve/test_cpu_worker.py @@ -0,0 +1,743 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +""" +Unit tests for the CPU worker module. + +This module tests CPU-intensive functions that can be offloaded from the main worker process. +""" + +import json +import sys +import tempfile +import zipfile +from dataclasses import dataclass, field +from datetime import datetime +from typing import Literal +from unittest.mock import Mock + +import pytest +import redis + + +# Create mock config classes before importing cpu_worker +@dataclass +class MockRedisConfig: + """Mock Redis configuration""" + + host: str = "localhost" + port: int = 6379 + db: int = 0 + password: str | None = None + socket_connect_timeout: int = 5 + socket_timeout: int = 5 + decode_responses: bool = True + retention_ttl: int = 604800 # Redis key retention TTL in seconds (7 days) + + +@dataclass +class MockQueueConfig: + """Mock queue configuration""" + + name: str = "inference" + result_zip_queue_name: str = "result_zip" + object_storage_queue_name: str = "object_storage" + finalize_metadata_queue_name: str = "finalize_metadata" + max_size: int = 10 + default_timeout: str = "1h" + job_timeout: str = "2h" + + +# Secure temp dir for mock path defaults (S108) +_secure_test_dir = tempfile.mkdtemp(prefix="e2s_testing_") + + +@dataclass +class MockPathsConfig: + """Mock paths configuration""" + + default_output_dir: str = field(default_factory=lambda: _secure_test_dir) + results_zip_dir: str = field(default_factory=lambda: _secure_test_dir) + output_format: Literal["zarr", "netcdf4"] = "zarr" + result_zip_enabled: bool = False + + +@dataclass +class MockLoggingConfig: + """Mock logging configuration""" + + level: str = "INFO" + format: str = "%(asctime)s - %(name)s - %(levelname)s - %(message)s" + + +@dataclass +class MockServerConfig: + """Mock server configuration""" + + host: str = "0.0.0.0" # noqa: S104 + port: int = 8000 + workers: int = 1 + title: str = "REST API" + description: str = "REST API for running workflows" + version: str = "1.0.0" + docs_url: str = "/docs" + redoc_url: str = "/redoc" + + +@dataclass +class MockCORSConfig: + """Mock CORS configuration""" + + allow_origins: list = field(default_factory=lambda: ["*"]) + allow_credentials: bool = True + allow_methods: list = field(default_factory=lambda: ["*"]) + allow_headers: list = field(default_factory=lambda: ["*"]) + + +@dataclass +class MockObjectStorageConfig: + """Mock object storage configuration""" + + enabled: bool = False + bucket: str | None = None + region: str = "us-east-1" + prefix: str = "outputs" + access_key_id: str | None = None + secret_access_key: str | None = None + session_token: str | None = None + cloudfront_domain: str | None = None + cloudfront_key_pair_id: str | None = None + cloudfront_private_key_path: str | None = None + signed_url_expires_in: int = 3600 + + +@dataclass +class MockAppConfig: + """Mock root configuration""" + + redis: MockRedisConfig = field(default_factory=MockRedisConfig) + queue: MockQueueConfig = field(default_factory=MockQueueConfig) + paths: MockPathsConfig = field(default_factory=MockPathsConfig) + logging: MockLoggingConfig = field(default_factory=MockLoggingConfig) + server: MockServerConfig = field(default_factory=MockServerConfig) + cors: MockCORSConfig = field(default_factory=MockCORSConfig) + object_storage: MockObjectStorageConfig = field( + default_factory=MockObjectStorageConfig + ) + + +# Create a mock config module +mock_config_module = Mock() +mock_config_module.AppConfig = MockAppConfig +mock_config_module.get_config = Mock(return_value=MockAppConfig()) +mock_config_module.get_config_manager = Mock() + +# Inject the mock before importing cpu_worker +sys.modules["api_server.config"] = mock_config_module + +# Now import the module under test +from api_server.cpu_worker import create_results_zip # noqa: E402 + + +class TestCreateResultsZip: + """Test suite for create_results_zip function""" + + @pytest.fixture + def mock_redis(self): + """Mock Redis client""" + return Mock(spec=redis.Redis) + + @pytest.fixture + def inference_request(self): + """Sample inference request data""" + return { + "id": "test_req_123", + "type": "deterministic", + "status": "completed", + "completion_time": "2024-01-01T12:00:00Z", + "execution_time_seconds": 45.5, + "created_at": "2024-01-01T11:00:00Z", + "peak_memory_usage": "2.5GB", + "device": "cuda:0", + "request": { + "workflow_type": "deterministic", + "time": "2024-01-01T00:00:00Z", + "nsteps": 10, + "prognostic": {"model_type": "fcn"}, + "data": {"source_type": "gfs"}, + "io": {"backend_type": "zarr"}, + }, + } + + def test_create_results_zip_with_single_file( + self, mock_redis, inference_request, tmp_path + ): + """Test creating zip with a single output file""" + # Create a temporary output file + output_file = tmp_path / "output.nc" + output_file.write_text("test data content") + file_size = output_file.stat().st_size + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_req_123", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Verify zip file was created - filename is now just request_id + assert zip_filename is not None + assert zip_filename == "test_req_123" + + zip_path = results_zip_dir / zip_filename + assert zip_path.exists() + + # Verify Redis was updated (4 times: metadata, results_zip_dir, zip, output_path) + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + + # First call: metadata (stored in Redis for finalize worker) + assert calls[0][0][0] == "inference_request:test_req_123:pending_metadata" + + # Second call: results_zip_dir path + assert calls[1][0][0] == "inference_request:test_req_123:results_zip_dir" + assert calls[1][0][2] == str(results_zip_dir) + + # Third call: zip filename + assert calls[2][0][0] == "inference_request_zips:test_req_123:zip_file" + assert calls[2][0][2] == zip_filename + + # Fourth call: output path + assert calls[3][0][0] == "inference_request:test_req_123:output_path" + assert calls[3][0][1] == 86400 # 24 hours + assert calls[3][0][2] == str(output_file) + + # Verify zip contents - metadata.json is NOT in the zip + with zipfile.ZipFile(zip_path, "r") as zf: + file_list = zf.namelist() + assert "metadata.json" not in file_list # metadata is now separate + assert "output.nc" in file_list + + # Verify metadata is stored in Redis (not as file - file is created by finalize worker) + # Get the metadata from the first setex call + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Verify metadata structure + assert metadata["request_id"] == "test_req_123" + assert metadata["status"] == "completed" + assert metadata["workflow_type"] == "deterministic" + assert metadata["execution_time_seconds"] == 45.5 + assert metadata["device"] == "cuda:0" + assert "zip_created_at" in metadata + + # Verify parameters field + assert "parameters" in metadata + assert metadata["parameters"] == inference_request["request"] + assert metadata["parameters"]["workflow_type"] == "deterministic" + assert metadata["parameters"]["nsteps"] == 10 + + # Verify output_files manifest includes both the file AND the zip + assert "output_files" in metadata + assert isinstance(metadata["output_files"], list) + assert len(metadata["output_files"]) == 2 # output.nc + zip file entry + + # Convert to dict for easier checking + files_dict = {f["path"]: f["size"] for f in metadata["output_files"]} + + # Check the output file entry + assert "output.nc" in files_dict + assert files_dict["output.nc"] == file_size + + # Check the zip file entry (path = request_id) + assert "test_req_123" in files_dict + assert files_dict["test_req_123"] == zip_path.stat().st_size + + def test_create_results_zip_with_directory( + self, mock_redis, inference_request, tmp_path + ): + """Test creating zip with a directory containing multiple files""" + # Create a temporary output directory with files + output_dir = tmp_path / "output_data" + output_dir.mkdir() + + file1 = output_dir / "data1.nc" + file1.write_text("data 1 content") + file1_size = file1.stat().st_size + + file2 = output_dir / "data2.nc" + file2.write_text("data 2 content with more text") + file2_size = file2.stat().st_size + + # Create subdirectory + subdir = output_dir / "plots" + subdir.mkdir() + file3 = subdir / "plot.png" + file3.write_bytes(b"fake png data") + file3_size = file3.stat().st_size + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_req_456", + output_path=output_dir, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Verify zip file was created - filename is now just request_id + assert zip_filename is not None + assert zip_filename == "test_req_456" + zip_path = results_zip_dir / zip_filename + assert zip_path.exists() + + # Verify zip contents - metadata.json is NOT in the zip + with zipfile.ZipFile(zip_path, "r") as zf: + file_list = zf.namelist() + assert "metadata.json" not in file_list + + # Verify files exist in zip + assert "output_data/data1.nc" in file_list + assert "output_data/data2.nc" in file_list + assert "output_data/plots/plot.png" in file_list + + # Verify metadata is stored in Redis (not as file) + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Verify output_files manifest (3 files + 1 zip entry) + assert "output_files" in metadata + output_files = metadata["output_files"] + assert len(output_files) == 4 # 3 files + zip entry + + # Convert to dict for easier checking + files_dict = {f["path"]: f["size"] for f in output_files} + + # Verify all files are in manifest with correct sizes + assert "output_data/data1.nc" in files_dict + assert files_dict["output_data/data1.nc"] == file1_size + + assert "output_data/data2.nc" in files_dict + assert files_dict["output_data/data2.nc"] == file2_size + + assert "output_data/plots/plot.png" in files_dict + assert files_dict["output_data/plots/plot.png"] == file3_size + + # Verify zip file entry (path = request_id) + assert "test_req_456" in files_dict + assert files_dict["test_req_456"] == zip_path.stat().st_size + + def test_create_results_zip_with_nonexistent_output( + self, mock_redis, inference_request, tmp_path + ): + """Test creating zip when output path doesn't exist""" + # Use nonexistent path + output_path = tmp_path / "nonexistent" + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_req_789", + output_path=output_path, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Should still create zip - filename is now just request_id + assert zip_filename is not None + assert zip_filename == "test_req_789" + zip_path = results_zip_dir / zip_filename + assert zip_path.exists() + + # Verify zip contents - should be empty (no output files) + with zipfile.ZipFile(zip_path, "r") as zf: + file_list = zf.namelist() + assert len(file_list) == 0 # No files in zip + + # Verify metadata is stored in Redis (not as file) + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # output_files should only contain the zip entry + assert "output_files" in metadata + assert len(metadata["output_files"]) == 1 # Only zip entry + assert metadata["output_files"][0]["path"] == "test_req_789" + + def test_create_results_zip_parameters_validation( + self, mock_redis, inference_request, tmp_path + ): + """Test that parameters are correctly stored in metadata""" + # Create a temporary output file + output_file = tmp_path / "output.nc" + output_file.write_text("test") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Modify inference request to have specific parameters + inference_request["request"] = { + "workflow_type": "ensemble", + "time": "2024-01-15T00:00:00Z", + "nsteps": 20, + "nensemble": 10, + "prognostic": {"model_type": "graphcast"}, + "data": {"source_type": "era5"}, + "io": {"backend_type": "netcdf"}, + "perturbation": {"method": "spherical_gaussian"}, + } + + # Call create_results_zip + result = create_results_zip( + request_id="test_req_params", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + assert result is not None + + # Verify metadata is stored in Redis (not as file) + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Verify parameters field exists and matches + assert "parameters" in metadata + params = metadata["parameters"] + + assert params["workflow_type"] == "ensemble" + assert params["time"] == "2024-01-15T00:00:00Z" + assert params["nsteps"] == 20 + assert params["nensemble"] == 10 + assert params["prognostic"]["model_type"] == "graphcast" + assert params["data"]["source_type"] == "era5" + assert params["io"]["backend_type"] == "netcdf" + assert params["perturbation"]["method"] == "spherical_gaussian" + + def test_create_results_zip_file_manifest_structure( + self, mock_redis, inference_request, tmp_path + ): + """Test that file manifest has correct structure""" + # Create output directory with multiple files + output_dir = tmp_path / "outputs" + output_dir.mkdir() + + for i in range(5): + file = output_dir / f"file_{i}.dat" + file.write_text(f"content {i}" * 100) + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_manifest", + output_path=output_dir, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Verify metadata is stored in Redis + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + manifest = metadata["output_files"] + + # Verify manifest structure (5 files + 1 zip entry) + assert isinstance(manifest, list) + assert len(manifest) == 6 # 5 files + zip entry + + # Find the zip entry (path = request_id) + zip_entry = None + file_entries = [] + for entry in manifest: + if entry["path"] == "test_manifest": + zip_entry = entry + else: + file_entries.append(entry) + + assert zip_entry is not None + assert len(file_entries) == 5 + + # Verify file entries structure + zip_path = results_zip_dir / zip_filename + with zipfile.ZipFile(zip_path, "r") as zf: + for entry in file_entries: + assert isinstance(entry, dict) + assert "path" in entry + assert "size" in entry + assert isinstance(entry["path"], str) + assert isinstance(entry["size"], int) + assert entry["size"] > 0 + + # Verify path starts with output directory name + assert entry["path"].startswith("outputs/") + + # Verify size matches actual file in zip + actual_size = zf.getinfo(entry["path"]).file_size + assert entry["size"] == actual_size + + def test_create_results_zip_missing_request_parameters(self, mock_redis, tmp_path): + """Test handling when request doesn't have parameters field""" + # Create inference request without 'request' field + inference_request = { + "id": "test_req_no_params", + "type": "deterministic", + "status": "completed", + } + + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_req_no_params", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Verify zip was created + assert zip_filename is not None + + # Verify metadata stored in Redis - parameters should be None + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Parameters should be None or not present + assert metadata.get("parameters") is None + + def test_create_results_zip_redis_failure( + self, mock_redis, inference_request, tmp_path + ): + """Test handling when Redis operation fails""" + # Make Redis setex raise an exception + mock_redis.setex.side_effect = Exception("Redis connection failed") + + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip - should handle exception gracefully + zip_filename = create_results_zip( + request_id="test_redis_fail", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Should return None since storing in Redis failed + assert zip_filename is None + + def test_create_results_zip_exception_handling(self, mock_redis, tmp_path): + """Test general exception handling""" + # Use invalid inference request that will cause issues + invalid_request = None + + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip with invalid data + zip_filename = create_results_zip( + request_id="test_exception", + output_path=output_file, + inference_request=invalid_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + # Should return None on exception + assert zip_filename is None + + def test_create_results_zip_metadata_completeness( + self, mock_redis, inference_request, tmp_path + ): + """Test that all expected metadata fields are present""" + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test data") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_metadata", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + assert zip_filename is not None + + # Verify metadata stored in Redis + assert mock_redis.setex.call_count == 4 + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Check all expected fields + required_fields = [ + "request_id", + "status", + "completion_time", + "execution_time_seconds", + "workflow_type", + "created_at", + "peak_memory_usage", + "device", + "zip_created_at", + "parameters", + "output_files", + ] + + for f in required_fields: + assert f in metadata, f"Missing required field: {field}" + + # Verify zip_created_at is a valid timestamp + zip_created_at = metadata["zip_created_at"] + assert zip_created_at.endswith("Z") + # Should be parseable as ISO format + datetime.fromisoformat(zip_created_at.replace("Z", "+00:00")) + + def test_create_results_zip_manifest_includes_zip_entry( + self, mock_redis, inference_request, tmp_path + ): + """Test that the manifest includes an entry for the zip file itself""" + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test data content") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + request_id = "test_zip_entry" + + # Call create_results_zip + zip_filename = create_results_zip( + request_id=request_id, + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + assert zip_filename is not None + + zip_path = results_zip_dir / zip_filename + zip_size = zip_path.stat().st_size + + # Verify metadata stored in Redis + calls = mock_redis.setex.call_args_list + metadata_json = calls[0][0][2] + metadata = json.loads(metadata_json) + + # Find the zip entry in manifest + zip_entry = None + for entry in metadata["output_files"]: + if entry["path"] == request_id: + zip_entry = entry + break + + # Verify zip entry exists and has correct size + assert zip_entry is not None, "Zip file entry not found in manifest" + assert zip_entry["path"] == request_id + assert zip_entry["size"] == zip_size + + def test_create_results_zip_output_path_stored_in_redis( + self, mock_redis, inference_request, tmp_path + ): + """Test that output path is stored in Redis""" + # Create output file + output_file = tmp_path / "output.nc" + output_file.write_text("test data") + + # Create results directory + results_zip_dir = tmp_path / "results" + results_zip_dir.mkdir() + + # Call create_results_zip + zip_filename = create_results_zip( + request_id="test_output_path", + output_path=output_file, + inference_request=inference_request, + results_zip_dir=results_zip_dir, + redis_client=mock_redis, + ) + + assert zip_filename is not None + + # Verify Redis setex was called 4 times (metadata, results_zip_dir, zip, output_path) + assert mock_redis.setex.call_count == 4 + + # Check the output path call (4th call) + calls = mock_redis.setex.call_args_list + output_path_call = calls[3] + + assert ( + output_path_call[0][0] == "inference_request:test_output_path:output_path" + ) + assert output_path_call[0][1] == 86400 # 24 hours + assert output_path_call[0][2] == str(output_file) + + +if __name__ == "__main__": + pytest.main([__file__, "-v"]) diff --git a/test/serve/test_main.py b/test/serve/test_main.py new file mode 100644 index 000000000..964fc9922 --- /dev/null +++ b/test/serve/test_main.py @@ -0,0 +1,1213 @@ +# SPDX-FileCopyrightText: Copyright (c) 2024-2026 NVIDIA CORPORATION & AFFILIATES. +# SPDX-FileCopyrightText: All rights reserved. +# SPDX-License-Identifier: Apache-2.0 +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +""" +Unit tests for api_server.main module. + +Tests the FastAPI endpoints including the workflow schema endpoint. +""" + +import os +from typing import Any +from unittest.mock import AsyncMock, MagicMock, patch + +import pytest +from fastapi.testclient import TestClient +from pydantic import Field + +# Set API environment variable before importing main +os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" + +# Patch FastAPI route creation to handle union return types +# This fixes the issue where FastAPI can't handle dict[str, Any] | StreamingResponse +# ruff: noqa: E402 +import fastapi # type: ignore[import-untyped] +import fastapi.routing # type: ignore[import-untyped] +from fastapi.exceptions import FastAPIError # type: ignore[import-untyped] + +_original_route_init = fastapi.routing.APIRoute.__init__ + + +def _patched_route_init(self, *args, **kwargs): + """Patched APIRoute.__init__ that handles union return types with StreamingResponse""" + import inspect + + from starlette.responses import StreamingResponse + + # Check if the endpoint has a union return type with StreamingResponse + endpoint = kwargs.get("endpoint") or (args[1] if len(args) > 1 else None) + if endpoint: + sig = inspect.signature(endpoint) + return_annotation = sig.return_annotation + if ( + hasattr(return_annotation, "__args__") + and StreamingResponse in return_annotation.__args__ + ): + # Set response_model=None to skip response model generation + kwargs["response_model"] = None + + try: + return _original_route_init(self, *args, **kwargs) + except FastAPIError as e: + if "Invalid args for response field" in str(e): + # Retry with response_model=None + kwargs["response_model"] = None + return _original_route_init(self, *args, **kwargs) + raise + + +# Apply the patch before any imports of api_server.main +fastapi.routing.APIRoute.__init__ = _patched_route_init + + +class TestWorkflowSchemaEndpoint: + """Tests for GET /v1/workflows/{workflow_name}/schema endpoint""" + + @pytest.fixture + def mock_workflow_class(self): + """Create a mock workflow class with Parameters""" + from api_server.workflow import Workflow, WorkflowParameters + + class TestWorkflowParameters(WorkflowParameters): + """Test parameters for unit testing""" + + forecast_times: list[str] = Field( + default=["2024-01-01T00:00:00"], + description="List of forecast initialization times", + ) + nsteps: int = Field( + default=10, + ge=1, + le=100, + description="Number of forecast steps", + ) + model_type: str = Field( + default="fcn", + description="Model type to use", + ) + + class TestWorkflow(Workflow): + name = "test_workflow" + description = "Test workflow for unit testing" + Parameters = TestWorkflowParameters + + @classmethod + def validate_parameters( + cls, parameters: dict[str, Any] | TestWorkflowParameters + ) -> TestWorkflowParameters: + return TestWorkflowParameters.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "success"} + + return TestWorkflow + + @pytest.fixture + def client(self, mock_workflow_class): + """Create test client with mocked dependencies""" + # Mock Redis and other dependencies at their source locations + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue"), + patch("api_server.workflow.register_all_workflows"), + ): + # Setup mock async Redis + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_instance.get = AsyncMock(return_value=None) + mock_async_redis.return_value = mock_async_instance + + # Setup mock sync Redis + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + + from api_server.main import app + from api_server.workflow import workflow_registry + + # Register the test workflow + workflow_registry._workflows["test_workflow"] = mock_workflow_class + + with TestClient(app, raise_server_exceptions=False) as client: + yield client + + # Cleanup + if "test_workflow" in workflow_registry._workflows: + del workflow_registry._workflows["test_workflow"] + + def test_schema_endpoint_returns_valid_json_schema( + self, client, mock_workflow_class + ): + """Test that schema endpoint returns valid JSON Schema""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + # Verify it's a valid JSON Schema structure + assert "type" in schema + assert schema["type"] == "object" + assert "properties" in schema + assert "title" in schema + + def test_schema_endpoint_includes_all_parameters(self, client, mock_workflow_class): + """Test that schema includes all defined parameters""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + properties = schema["properties"] + + # Check all parameters are present + assert "forecast_times" in properties + assert "nsteps" in properties + assert "model_type" in properties + + def test_schema_endpoint_includes_field_metadata(self, client, mock_workflow_class): + """Test that schema includes field descriptions and constraints""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + properties = schema["properties"] + + # Check forecast_times has correct type + assert properties["forecast_times"]["type"] == "array" + assert "description" in properties["forecast_times"] + + # Check nsteps has constraints + nsteps = properties["nsteps"] + assert nsteps["type"] == "integer" + assert "description" in nsteps + # Pydantic uses "minimum" and "maximum" for ge/le constraints + assert nsteps.get("minimum") == 1 or nsteps.get("exclusiveMinimum") == 0 + assert nsteps.get("maximum") == 100 or nsteps.get("exclusiveMaximum") == 101 + + def test_schema_endpoint_includes_defaults(self, client, mock_workflow_class): + """Test that schema includes default values""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + properties = schema["properties"] + + # Check defaults are included + assert properties["forecast_times"]["default"] == ["2024-01-01T00:00:00"] + assert properties["nsteps"]["default"] == 10 + assert properties["model_type"]["default"] == "fcn" + + def test_schema_endpoint_workflow_not_found(self, client): + """Test that 404 is returned for non-existent workflow""" + response = client.get("/v1/workflows/nonexistent_workflow/schema") + + assert response.status_code == 404 + error = response.json() + assert "not found" in error["detail"].lower() + + def test_schema_endpoint_openapi_compatibility(self, client, mock_workflow_class): + """Test that returned schema is OpenAPI 3.1 compatible (JSON Schema draft 2020-12)""" + response = client.get("/v1/workflows/test_workflow/schema") + + assert response.status_code == 200 + schema = response.json() + + # OpenAPI 3.1 / JSON Schema required fields + assert "type" in schema + assert "properties" in schema + + # Schema should be directly usable (no wrapper objects) + assert "workflow_name" not in schema + assert "parameters_schema" not in schema + + +class TestWorkflowParameterValidation: + """Test workflow parameter validation at submission time""" + + @pytest.fixture + def client(self): + """Create test client""" + from typing import Any, Literal + from unittest.mock import MagicMock, patch + + from api_server.main import app + from api_server.workflow import ( + Workflow, + WorkflowParameters, + workflow_registry, + ) + from pydantic import Field + + # Create test workflow parameter classes with Literal validation + class TestDeterministicParams(WorkflowParameters): + forecast_times: list[str] = Field(default=["2024-01-01T00:00:00"]) + nsteps: int = Field(default=6, ge=1, le=100) + model_type: Literal["dlwp", "fcn"] = Field(default="fcn") + data_source: Literal["gfs"] = Field(default="gfs") + output_format: Literal["zarr"] = Field(default="zarr") + plot_variable: Literal["t2m", "msl", "u10m", "v10m", "tcwv", "z500"] = ( + Field(default="t2m") + ) + + class TestDiagnosticParams(WorkflowParameters): + forecast_times: list[str] = Field(default=["2024-01-01T00:00:00"]) + nsteps: int = Field(default=6, ge=1, le=100) + prognostic_model_type: Literal["dlwp", "fcn"] = Field(default="fcn") + diagnostic_model_type: Literal["precipitation_afno"] = Field( + default="precipitation_afno" + ) + data_source: Literal["gfs"] = Field(default="gfs") + plot_variable: Literal[ + "tp", "t2m", "msl", "u10m", "v10m", "tcwv", "z500" + ] = Field(default="tp") + + # Create mock workflow classes + class TestDeterministicWorkflow(Workflow): + name = "deterministic_workflow" + description = "Test deterministic workflow" + Parameters = TestDeterministicParams + + @classmethod + def validate_parameters( + cls, parameters: dict[str, Any] | TestDeterministicParams + ) -> TestDeterministicParams: + try: + return TestDeterministicParams.validate(parameters) + except Exception as e: + raise ValueError(f"Invalid parameters: {e}") from e + + def run(self, parameters, execution_id): + return {"status": "success"} + + class TestDiagnosticWorkflow(Workflow): + name = "diagnostic_workflow" + description = "Test diagnostic workflow" + Parameters = TestDiagnosticParams + + @classmethod + def validate_parameters( + cls, parameters: dict[str, Any] | TestDiagnosticParams + ) -> TestDiagnosticParams: + try: + return TestDiagnosticParams.validate(parameters) + except Exception as e: + raise ValueError(f"Invalid parameters: {e}") from e + + def run(self, parameters, execution_id): + return {"status": "success"} + + # Register test workflows directly in the registry + workflow_registry._workflows["deterministic_workflow"] = ( + TestDeterministicWorkflow + ) + workflow_registry._workflows["diagnostic_workflow"] = TestDiagnosticWorkflow + + # Create mocks + mock_redis = MagicMock() + mock_queue = MagicMock() + mock_queue.__len__ = MagicMock(return_value=0) + mock_queue.max_size = 100 + + with patch("api_server.main.redis_sync_client", mock_redis): + with patch("api_server.main.inference_queue", mock_queue): + test_client = TestClient(app) + yield test_client, mock_queue, mock_redis + + def test_valid_deterministic_workflow_parameters(self, client): + """Test that valid parameters for deterministic workflow are accepted""" + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_job" + mock_queue.enqueue = MagicMock(return_value=mock_job) + mock_redis.llen = MagicMock(return_value=0) + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "fcn", + "data_source": "gfs", + "output_format": "zarr", + "plot_variable": "t2m", + } + }, + ) + + assert response.status_code == 200 + data = response.json() + assert data["status"] == "queued" + + def test_invalid_model_type_rejected(self, client): + """Test that invalid model_type is rejected at submission""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "invalid_model", # Invalid value + "data_source": "gfs", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "model_type" in data["detail"] + + def test_invalid_data_source_rejected(self, client): + """Test that invalid data_source is rejected at submission""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "fcn", + "data_source": "invalid_source", # Invalid value + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "data_source" in data["detail"] + + def test_invalid_output_format_rejected(self, client): + """Test that invalid output_format is rejected at submission""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "fcn", + "data_source": "gfs", + "output_format": "invalid_format", # Invalid value + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "output_format" in data["detail"] + + def test_invalid_plot_variable_rejected(self, client): + """Test that invalid plot_variable is rejected at submission""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "model_type": "fcn", + "data_source": "gfs", + "plot_variable": "invalid_variable", # Invalid value + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "plot_variable" in data["detail"] + + def test_invalid_nsteps_range_rejected(self, client): + """Test that nsteps outside valid range is rejected""" + test_client, _, _ = client + + # Test nsteps too low + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 0, # Below minimum of 1 + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + + # Test nsteps too high + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 101, # Above maximum of 100 + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + + def test_diagnostic_workflow_invalid_model_types_rejected(self, client): + """Test that invalid model types for diagnostic workflow are rejected""" + test_client, _, _ = client + + # Test invalid prognostic model + response = test_client.post( + "/v1/infer/diagnostic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "prognostic_model_type": "invalid_prognostic", # Invalid + "diagnostic_model_type": "precipitation_afno", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "prognostic_model_type" in data["detail"] + + # Test invalid diagnostic model + response = test_client.post( + "/v1/infer/diagnostic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "prognostic_model_type": "fcn", + "diagnostic_model_type": "invalid_diagnostic", # Invalid + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "diagnostic_model_type" in data["detail"] + + def test_valid_diagnostic_workflow_parameters(self, client): + """Test that valid parameters for diagnostic workflow are accepted""" + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_job" + mock_queue.enqueue = MagicMock(return_value=mock_job) + mock_redis.llen = MagicMock(return_value=0) + + response = test_client.post( + "/v1/infer/diagnostic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 10, + "prognostic_model_type": "fcn", + "diagnostic_model_type": "precipitation_afno", + "data_source": "gfs", + "plot_variable": "tp", + } + }, + ) + + assert response.status_code == 200 + data = response.json() + assert data["status"] == "queued" + + def test_multiple_invalid_parameters_rejected(self, client): + """Test that multiple invalid parameters are caught""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": ["2024-01-01T00:00:00"], + "nsteps": 101, # Invalid: too high + "model_type": "invalid_model", # Invalid value + "data_source": "invalid_source", # Invalid value + "output_format": "invalid_format", # Invalid value + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + + def test_valid_forecast_times_iso8601_accepted(self, client): + """Test that valid ISO 8601 forecast_times are accepted""" + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_job" + mock_queue.enqueue = MagicMock(return_value=mock_job) + mock_redis.llen = MagicMock(return_value=0) + + # Test various valid ISO 8601 formats + valid_times = [ + ["2024-01-01T00:00:00"], + ["2024-01-01T00:00:00Z"], + ["2024-01-01T00:00:00+00:00"], + ["2024-01-01T00:00:00.123456"], + ["2024-01-01 00:00:00"], # Space separator also accepted + ["2024-01-01T00:00:00", "2024-01-02T00:00:00", "2024-01-03T00:00:00"], + ] + + for times in valid_times: + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": times, + "nsteps": 10, + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 200, f"Failed for times: {times}" + data = response.json() + assert data["status"] == "queued" + + def test_invalid_forecast_times_rejected(self, client): + """Test that invalid forecast_times formats are rejected""" + test_client, _, _ = client + + # Test various invalid formats + invalid_times = [ + (["2024-01-01"], "date without time"), + (["01/01/2024"], "wrong date format"), + (["not-a-date"], "completely invalid"), + (["2024-13-01T00:00:00"], "invalid month"), + (["2024-01-32T00:00:00"], "invalid day"), + (["2024-01-01T25:00:00"], "invalid hour"), + ] + + for times, description in invalid_times: + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": times, + "nsteps": 10, + "model_type": "fcn", + } + }, + ) + + assert ( + response.status_code == 422 + ), f"Expected 422 for {description}, got {response.status_code}" + data = response.json() + assert ( + "Invalid parameters" in data["detail"] + ), f"Expected validation error for {description}" + assert ( + "forecast_times" in data["detail"] + ), f"Expected forecast_times in error for {description}" + + def test_forecast_times_mixed_valid_invalid_rejected(self, client): + """Test that forecast_times with one invalid value fails""" + test_client, _, _ = client + + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": [ + "2024-01-01T00:00:00", # Valid + "not-a-date", # Invalid + "2024-01-03T00:00:00", # Valid + ], + "nsteps": 10, + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "forecast_times" in data["detail"] + + def test_forecast_times_wrong_type_rejected(self, client): + """Test that forecast_times with non-string values are rejected""" + test_client, _, _ = client + + # Test with integer + response = test_client.post( + "/v1/infer/deterministic_workflow", + json={ + "parameters": { + "forecast_times": [12345], # Not a string + "nsteps": 10, + "model_type": "fcn", + } + }, + ) + + assert response.status_code == 422 + data = response.json() + assert "Invalid parameters" in data["detail"] + assert "forecast_times" in data["detail"] + + +class TestWorkflowExecutionRequest: + """Tests for WorkflowExecutionRequest validation""" + + def test_valid_request_with_parameters(self): + """Test that valid request with parameters field is accepted""" + from api_server.main import WorkflowExecutionRequest + + # Valid request + request = WorkflowExecutionRequest( + parameters={"field1": "value1", "field2": 123} + ) + assert request.parameters == {"field1": "value1", "field2": 123} + + def test_valid_request_with_empty_parameters(self): + """Test that request with empty parameters dict is accepted""" + from api_server.main import WorkflowExecutionRequest + + # Empty parameters is valid + request = WorkflowExecutionRequest(parameters={}) + assert request.parameters == {} + + def test_valid_request_without_parameters_uses_default(self): + """Test that request without parameters field uses default empty dict""" + from api_server.main import WorkflowExecutionRequest + + # No parameters provided - should use default + request = WorkflowExecutionRequest() + assert request.parameters == {} + + def test_invalid_request_with_extra_fields(self): + """Test that request with unknown fields is rejected""" + from api_server.main import WorkflowExecutionRequest + from pydantic import ValidationError + + # Request with unknown field should be rejected + with pytest.raises(ValidationError, match="Extra inputs are not permitted"): + WorkflowExecutionRequest( + parameters={"valid": "param"}, unknown_field="should_fail" + ) + + def test_invalid_request_with_multiple_extra_fields(self): + """Test that request with multiple unknown fields is rejected""" + from api_server.main import WorkflowExecutionRequest + from pydantic import ValidationError + + # Multiple unknown fields + with pytest.raises(ValidationError, match="Extra inputs are not permitted"): + WorkflowExecutionRequest( + parameters={"valid": "param"}, + extra1="bad", + extra2="also_bad", + extra3="still_bad", + ) + + def test_invalid_request_flat_structure(self): + """Test that flat request structure (without parameters wrapper) is rejected""" + from api_server.main import WorkflowExecutionRequest + from pydantic import ValidationError + + # Flat structure - fields that should be inside 'parameters' + with pytest.raises(ValidationError, match="Extra inputs are not permitted"): + WorkflowExecutionRequest( + forecast_times=["2024-01-01"], + nsteps=6, + model_type="fcn", + ) + + def test_invalid_request_mixed_structure(self): + """Test that mixed structure (parameters + extra fields) is rejected""" + from api_server.main import WorkflowExecutionRequest + from pydantic import ValidationError + + # Mixed: valid parameters field + invalid extra fields + with pytest.raises(ValidationError, match="Extra inputs are not permitted"): + WorkflowExecutionRequest( + parameters={"forecast_times": ["2024-01-01"], "nsteps": 6}, + workflow_type="deterministic", # This should not be at this level + device="auto", # This should not be at this level + ) + + def test_parameters_field_type_validation(self): + """Test that parameters field must be a dict""" + from api_server.main import WorkflowExecutionRequest + from pydantic import ValidationError + + # parameters must be a dict, not a string + with pytest.raises(ValidationError): + WorkflowExecutionRequest(parameters="not_a_dict") + + # parameters must be a dict, not a list + with pytest.raises(ValidationError): + WorkflowExecutionRequest(parameters=["not", "a", "dict"]) + + # parameters must be a dict, not None + with pytest.raises(ValidationError): + WorkflowExecutionRequest(parameters=None) + + def test_valid_request_serialization(self): + """Test that valid request can be serialized to dict""" + from api_server.main import WorkflowExecutionRequest + + request = WorkflowExecutionRequest( + parameters={"forecast_times": ["2024-01-01"], "nsteps": 10} + ) + + # Serialize to dict + data = request.model_dump() + assert isinstance(data, dict) + assert data == {"parameters": {"forecast_times": ["2024-01-01"], "nsteps": 10}} + + def test_valid_request_with_nested_parameters(self): + """Test that request with nested parameter structures is accepted""" + from api_server.main import WorkflowExecutionRequest + + # Complex nested parameters + request = WorkflowExecutionRequest( + parameters={ + "forecast_times": ["2024-01-01", "2024-01-02"], + "nsteps": 10, + "config": { + "model": {"type": "fcn", "version": "1.0"}, + "data": {"source": "gfs", "cache": True}, + }, + "options": ["opt1", "opt2", "opt3"], + } + ) + + assert request.parameters["nsteps"] == 10 + assert request.parameters["config"]["model"]["type"] == "fcn" + assert len(request.parameters["options"]) == 3 + + +class TestQueuePosition: + """Tests for queue position functionality""" + + @pytest.fixture + def mock_queue(self): + """Create a mock RQ queue with job IDs""" + from unittest.mock import MagicMock + + queue = MagicMock() + queue.job_ids = [ + "workflow1_exec_001", + "workflow2_exec_002", + "workflow1_exec_003", + "workflow3_exec_004", + ] + return queue + + def test_get_queue_position_first_in_queue(self, mock_queue): + """Test getting position for first job in queue""" + from unittest.mock import patch + + from api_server.main import get_queue_position + + with patch("api_server.main.inference_queue", mock_queue): + position = get_queue_position("workflow1_exec_001") + assert position == 0 # 0-indexed: first job is at position 0 + + def test_get_queue_position_middle_of_queue(self, mock_queue): + """Test getting position for job in middle of queue""" + from unittest.mock import patch + + from api_server.main import get_queue_position + + with patch("api_server.main.inference_queue", mock_queue): + position = get_queue_position("workflow1_exec_003") + assert position == 2 # 0-indexed: third job is at position 2 + + def test_get_queue_position_last_in_queue(self, mock_queue): + """Test getting position for last job in queue""" + from unittest.mock import patch + + from api_server.main import get_queue_position + + with patch("api_server.main.inference_queue", mock_queue): + position = get_queue_position("workflow3_exec_004") + assert position == 3 # 0-indexed: fourth job is at position 3 + + def test_get_queue_position_not_in_queue(self, mock_queue): + """Test getting position for job not in queue returns None""" + from unittest.mock import patch + + from api_server.main import get_queue_position + + with patch("api_server.main.inference_queue", mock_queue): + position = get_queue_position("nonexistent_job") + assert position is None + + def test_get_queue_position_no_queue(self): + """Test getting position when queue is not initialized returns None""" + from unittest.mock import patch + + from api_server.main import get_queue_position + + with patch("api_server.main.inference_queue", None): + position = get_queue_position("any_job") + assert position is None + + def test_get_queue_position_empty_queue(self): + """Test getting position when queue is empty""" + from unittest.mock import MagicMock, patch + + from api_server.main import get_queue_position + + empty_queue = MagicMock() + empty_queue.job_ids = [] + + with patch("api_server.main.inference_queue", empty_queue): + position = get_queue_position("any_job") + assert position is None + + def test_get_queue_position_exception_handling(self): + """Test that exceptions in get_queue_position are handled gracefully""" + from unittest.mock import MagicMock, PropertyMock, patch + + from api_server.main import get_queue_position + + queue_with_error = MagicMock() + type(queue_with_error).job_ids = PropertyMock( + side_effect=Exception("Queue connection error") + ) + + with patch("api_server.main.inference_queue", queue_with_error): + position = get_queue_position("any_job") + assert position is None + + +class TestWorkflowExecutionWithQueuePosition: + """Tests for workflow execution endpoint with queue position""" + + @pytest.fixture + def mock_workflow_class(self): + """Create a mock workflow class""" + from api_server.workflow import Workflow, WorkflowParameters + + class TestWorkflowParameters(WorkflowParameters): + """Test parameters""" + + test_param: str = "default" + + class TestWorkflow(Workflow): + name = "test_workflow" + description = "Test workflow" + Parameters = TestWorkflowParameters + + @classmethod + def validate_parameters(cls, parameters): + return TestWorkflowParameters.validate(parameters) + + def run(self, parameters, execution_id): + return {"status": "success"} + + return TestWorkflow + + @pytest.fixture + def client(self, mock_workflow_class): + """Create test client with mocked dependencies""" + with ( + patch("redis.asyncio.Redis") as mock_async_redis, + patch("redis.Redis") as mock_sync_redis, + patch("rq.Queue") as mock_queue_class, + patch("api_server.workflow.register_all_workflows"), + ): + # Setup mock async Redis + mock_async_instance = MagicMock() + mock_async_instance.ping = AsyncMock(return_value=True) + mock_async_instance.close = AsyncMock() + mock_async_instance.get = AsyncMock(return_value=None) + mock_async_redis.return_value = mock_async_instance + + # Setup mock sync Redis + mock_sync_instance = MagicMock() + mock_sync_instance.ping = MagicMock(return_value=True) + mock_sync_instance.close = MagicMock() + mock_sync_instance.setex = MagicMock() + mock_sync_redis.return_value = mock_sync_instance + + # Setup mock queue + mock_queue = MagicMock() + mock_queue.__len__ = MagicMock(return_value=0) + mock_queue.job_ids = [] + mock_queue_class.return_value = mock_queue + + from api_server.main import app + from api_server.workflow import workflow_registry + + # Register the test workflow + workflow_registry._workflows["test_workflow"] = mock_workflow_class + + with TestClient(app, raise_server_exceptions=False) as client: + yield client, mock_queue, mock_sync_instance + + # Cleanup + if "test_workflow" in workflow_registry._workflows: + del workflow_registry._workflows["test_workflow"] + + def test_execute_workflow_includes_queue_position(self, client): + """Test that POST /v1/infer/{workflow_name} includes queue position""" + from unittest.mock import patch + + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_workflow_exec_123" + + # Before enqueue: queue size is 0 + mock_queue.__len__ = MagicMock(return_value=0) + mock_queue.enqueue = MagicMock(return_value=mock_job) + + # Redis llen returns 0 (the queue size before the job is fully committed) + mock_redis.llen = MagicMock(return_value=0) + + # Patch the inference_queue at module level + with patch("api_server.main.inference_queue", mock_queue): + response = test_client.post( + "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} + ) + + assert response.status_code == 200 + data = response.json() + + # Check that position is included in response + assert "position" in data + assert data["position"] == 0 # Redis llen returns 0 (first job, position 0) + assert data["status"] == "queued" + + def test_execute_workflow_position_with_existing_jobs(self, client): + """Test that position is correct when there are existing jobs in queue""" + from unittest.mock import patch + + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_workflow_exec_456" + + # Before enqueue: queue has 2 existing jobs + mock_queue.__len__ = MagicMock(return_value=2) + mock_queue.enqueue = MagicMock(return_value=mock_job) + + # Redis llen returns 2 (the queue size before the job is fully committed) + mock_redis.llen = MagicMock(return_value=2) + + # Patch the inference_queue at module level + with patch("api_server.main.inference_queue", mock_queue): + response = test_client.post( + "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} + ) + + assert response.status_code == 200 + data = response.json() + + # Check that position is correct + assert "position" in data + assert data["position"] == 2 # Redis llen returns 2 (third job, position 2) + assert data["status"] == "queued" + + def test_execute_workflow_position_with_five_existing_jobs(self, client): + """Test that position is correct with multiple existing jobs in queue""" + from unittest.mock import patch + + test_client, mock_queue, mock_redis = client + + # Setup mock job + mock_job = MagicMock() + mock_job.id = "test_workflow_exec_789" + mock_queue.enqueue = MagicMock(return_value=mock_job) + + # Before enqueue: queue has 5 existing jobs + mock_queue.__len__ = MagicMock(return_value=5) + + # Redis llen returns 5 (the queue size before the job is fully committed) + mock_redis.llen = MagicMock(return_value=5) + + # Patch the inference_queue at module level + with patch("api_server.main.inference_queue", mock_queue): + response = test_client.post( + "/v1/infer/test_workflow", json={"parameters": {"test_param": "value"}} + ) + + assert response.status_code == 200 + data = response.json() + + # Check that position is correct + assert "position" in data + assert data["position"] == 5 # Redis llen returns 5 (sixth job, position 5) + assert data["status"] == "queued" + + def test_get_workflow_status_includes_position_when_queued(self, client): + """Test that GET /v1/infer/{workflow_name}/{execution_id}/status includes position when status is queued""" + test_client, mock_queue, mock_redis = client + + # Setup queue with multiple jobs + execution_id = "exec_456" + job_id = f"test_workflow_{execution_id}" + + # Set up mock queue job_ids to include our job at position 1 + mock_queue.job_ids = ["other_job_1", job_id, "other_job_2"] + + # Mock Redis response for queued execution + import json + from datetime import datetime, timezone + from unittest.mock import patch + + execution_data = { + "workflow_name": "test_workflow", + "execution_id": execution_id, + "status": "queued", + "start_time": datetime.now(timezone.utc).isoformat(), + "metadata": {}, + } + mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) + + # Patch the inference_queue for get_queue_position to use + with patch("api_server.main.inference_queue", mock_queue): + response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") + + assert response.status_code == 200 + data = response.json() + + # Check that position is included and correct + assert "position" in data + assert data["position"] == 1 # Second in queue (0-indexed, so position 1) + assert data["status"] == "queued" + + def test_get_workflow_status_queued_but_not_in_queue(self, client): + """Test race condition: status is QUEUED but job not in queue (worker picked it up)""" + test_client, mock_queue, mock_redis = client + + execution_id = "exec_race" + + # Set up mock queue with empty job_ids (job already picked up by worker) + mock_queue.job_ids = [] + + # Mock Redis response with QUEUED status (worker hasn't updated it yet) + import json + from datetime import datetime, timezone + from unittest.mock import patch + + execution_data = { + "workflow_name": "test_workflow", + "execution_id": execution_id, + "status": "queued", # Still queued in Redis + "start_time": datetime.now(timezone.utc).isoformat(), + "metadata": {}, + } + mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) + + # Patch the inference_queue for get_queue_position to use + with patch("api_server.main.inference_queue", mock_queue): + response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") + + assert response.status_code == 200 + data = response.json() + + # Should be treated as RUNNING since job is not in queue + assert data["status"] == "running" + # Position should be None for running status + if "position" in data: + assert data["position"] is None + + def test_get_workflow_status_no_position_when_running(self, client): + """Test that position is None when workflow is running (not queued)""" + test_client, mock_queue, mock_redis = client + + execution_id = "exec_789" + + # Mock Redis response for running execution + import json + from datetime import datetime, timezone + + execution_data = { + "workflow_name": "test_workflow", + "execution_id": execution_id, + "status": "running", + "start_time": datetime.now(timezone.utc).isoformat(), + "metadata": {}, + } + mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) + + response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") + + assert response.status_code == 200 + data = response.json() + + # Position should be None or not included for non-queued status + # (The model allows None, so it could be None or absent) + if "position" in data: + assert data["position"] is None + assert data["status"] == "running" + + def test_get_workflow_status_no_position_when_completed(self, client): + """Test that position is None when workflow is completed""" + test_client, mock_queue, mock_redis = client + + execution_id = "exec_999" + + # Mock Redis response for completed execution + import json + from datetime import datetime, timezone + + execution_data = { + "workflow_name": "test_workflow", + "execution_id": execution_id, + "status": "completed", + "start_time": datetime.now(timezone.utc).isoformat(), + "end_time": datetime.now(timezone.utc).isoformat(), + "metadata": {}, + } + mock_redis.get = MagicMock(return_value=json.dumps(execution_data).encode()) + + response = test_client.get(f"/v1/infer/test_workflow/{execution_id}/status") + + assert response.status_code == 200 + data = response.json() + + # Position should be None for completed workflows + if "position" in data: + assert data["position"] is None + assert data["status"] == "completed" diff --git a/test/serve/server/test_workflow.py b/test/serve/test_workflow.py similarity index 97% rename from test/serve/server/test_workflow.py rename to test/serve/test_workflow.py index 4fb7e4259..36fc7af4f 100644 --- a/test/serve/server/test_workflow.py +++ b/test/serve/test_workflow.py @@ -24,10 +24,8 @@ import pytest import redis # type: ignore[import-untyped] -from pydantic import Field, ValidationError # type: ignore[import-untyped] - -from earth2studio.serve.server.config import get_config # type: ignore[import-untyped] -from earth2studio.serve.server.workflow import ( # type: ignore[import-untyped] +from api_server.config import get_config # type: ignore[import-untyped] +from api_server.workflow import ( # type: ignore[import-untyped] Workflow, WorkflowParameters, WorkflowProgress, @@ -38,25 +36,10 @@ register_all_workflows, workflow_registry, ) +from pydantic import Field, ValidationError # type: ignore[import-untyped] - -@pytest.fixture(scope="module", autouse=True) -def api_active_env(): # type: ignore[no-untyped-def] - """ - Set EARTH2STUDIO_API_ACTIVE=1 for tests in this module only; restore afterward. - - Ensures workflow registration is enabled during these tests without - affecting other test modules. - """ - old = os.environ.pop("EARTH2STUDIO_API_ACTIVE", None) - os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" - try: - yield - finally: - if old is not None: - os.environ["EARTH2STUDIO_API_ACTIVE"] = old - else: - os.environ.pop("EARTH2STUDIO_API_ACTIVE", None) +# imitate API server environment +os.environ["EARTH2STUDIO_API_ACTIVE"] = "1" def get_test_config(base_path: str | None = None): # type: ignore[no-untyped-def] @@ -78,13 +61,11 @@ def setup_test_paths(): # type: ignore[no-untyped-def] test_config = get_test_config(tmpdir) with ( patch( - "earth2studio.serve.server.workflow.get_config", + "api_server.config.get_config", return_value=test_config, ), - patch( - "earth2studio.serve.server.config.get_config", return_value=test_config - ), - patch("earth2studio.serve.server.workflow.config", test_config), + patch("api_server.config.get_config", return_value=test_config), + patch("api_server.workflow.workflow.config", test_config), ): yield test_config @@ -1649,7 +1630,7 @@ def test_discover_and_register_from_directories_with_python_file(self): workflow_file = Path(tmpdir) / "test_workflow_module.py" workflow_file.write_text( """ -from earth2studio.serve.server.workflow import Workflow, WorkflowParameters, workflow_registry +from api_server.workflow import Workflow, WorkflowParameters, workflow_registry class SimpleWorkflow(Workflow): # No __init__ needed - name and description set by registry @@ -1671,7 +1652,7 @@ def run(self, parameters, execution_id): successful, failed = self.registry.discover_and_register_from_directories( [tmpdir], include_builtin=False ) - from earth2studio.serve.server.workflow import workflow_registry + from api_server.workflow import workflow_registry assert successful == 1 assert failed == 0 @@ -1705,7 +1686,7 @@ def test_discover_and_register_filters_init_files(self): assert successful == 0 assert failed == 0 - @patch("earth2studio.serve.server.workflow.Path") + @patch("api_server.workflow.workflow.Path") def test_discover_and_register_with_builtin(self, mock_path): """Test discovering workflows with built-in workflows""" # Mock the builtin workflows directory to not exist @@ -1728,7 +1709,7 @@ def test_auto_register_workflows(self): with ( patch( - "earth2studio.serve.server.workflow.parse_workflow_directories_from_env", + "api_server.workflow.workflow.parse_workflow_directories_from_env", return_value=[], ), patch.object( @@ -1748,7 +1729,7 @@ def test_auto_register_workflows_with_error(self): mock_redis = Mock(spec=redis.Redis) with patch( - "earth2studio.serve.server.workflow.parse_workflow_directories_from_env", + "api_server.workflow.workflow.parse_workflow_directories_from_env", side_effect=Exception("Test error"), ): with pytest.raises(Exception, match="Test error"): diff --git a/test/utils/test_coords.py b/test/utils/test_coords.py index 8a526303c..4d8134225 100644 --- a/test/utils/test_coords.py +++ b/test/utils/test_coords.py @@ -26,12 +26,7 @@ handshake_dim, handshake_size, ) -from earth2studio.utils.coords import ( - cat_coords, - map_coords, - split_coords, - tile_coords, -) +from earth2studio.utils.coords import map_coords, split_coords @pytest.mark.parametrize( @@ -305,26 +300,15 @@ def test_convert_multidim_to_singledim_error(): def test_handshake_coords(): """Test handshake_coords function""" - coords1 = OrderedDict( - [ - ("lat", np.array([1, 2, 3])), - ("lon", np.array([4, 5, 6])), - ] - ) - coords2 = OrderedDict( - [ - ("lat", np.array([1, 2, 3])), - ("lon", np.array([4, 5, 6])), - ] - ) + coords1 = OrderedDict([("lat", np.array([1, 2, 3]))]) + coords2 = OrderedDict([("lat", np.array([1, 2, 3]))]) # Should pass handshake_coords(coords1, coords2, "lat") - handshake_coords(coords1, coords2, ["lat", "lon"]) # Test missing dimension in input coords with pytest.raises(KeyError, match="not found in input coordinates"): - handshake_coords(coords1, coords2, "variable") + handshake_coords(coords1, coords2, "lon") # Test missing dimension in target coords coords2 = OrderedDict([("lon", np.array([1, 2, 3]))]) @@ -436,425 +420,3 @@ def test_convert_multidim_to_singledim_additional(): ValueError, match="Assumed that if an n-dimensional coordinate exists" ): convert_multidim_to_singledim(coords) - - -def test_tile_coords(): - """Test tiling function for expanding dimensions""" - - x = torch.randn(2, 721, 1440) - coords = OrderedDict( - { - "variable": np.array(["z", "lsm"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - target_coords = OrderedDict( - { - "ensemble": np.array([0, 1, 2]), - "time": np.array([1, 2, 3, 4]), - "lead_time": np.array([0, 1, 2, 3, 4]), - "variable": np.array(["z", "lsm"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - result, result_coords = tile_coords(x, coords, target_coords) - assert result.shape == (3, 4, 5, 2, 721, 1440) - assert "variable" in result_coords - assert "time" in result_coords - - -def test_tile_coords_ignores_common_dims(): - x = torch.randn(2, 721, 1440) - coords = OrderedDict( - { - "variable": np.array(["z", "lsm"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - # target_coords has "variable", "lat", "lon" which should be ignored - # Only "ensemble", "time", "lead_time" should be used for tiling - target_coords = OrderedDict( - { - "ensemble": np.array([0, 1, 2]), - "time": np.array([1, 2, 3, 4]), - "lead_time": np.array([0, 1, 2, 3, 4]), - "variable": np.array(["different", "values"]), # Should be ignored - "lat": np.linspace(0, 90, 100), # Should be ignored - "lon": np.linspace(0, 180, 200), # Should be ignored - } - ) - - result, result_coords = tile_coords(x, coords, target_coords) - # Should tile to (3, 4, 5, 2, 721, 1440) - leading dims from target_coords (not in coords) - assert result.shape == (3, 4, 5, 2, 721, 1440) - # Should use coords values, not target_coords values for common dims - assert np.array_equal(result_coords["variable"], coords["variable"]) - assert np.array_equal(result_coords["lat"], coords["lat"]) - assert np.array_equal(result_coords["lon"], coords["lon"]) - - -def test_tile_coords_edge_cases(): - # Test: no leading dimensions (all target_coords dims exist in coords) - x = torch.randn(2, 3, 4) - coords = OrderedDict( - { - "a": np.array([0, 1]), - "b": np.array([0, 1, 2]), - "c": np.array([0, 1, 2, 3]), - } - ) - target_coords = OrderedDict( - { - "a": np.array([0, 1]), - "b": np.array([0, 1, 2]), - "c": np.array([0, 1, 2, 3]), - } - ) - result, result_coords = tile_coords(x, coords, target_coords) - assert result.shape == x.shape - assert result_coords == coords - - # Test: common dimensions in target_coords are ignored (uses coords values) - x = torch.randn(2, 721, 1440) - coords = OrderedDict( - { - "variable": np.array(["z", "lsm"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - target_coords = OrderedDict( - { - "ensemble": np.array([0, 1, 2]), - "time": np.array([1, 2, 3, 4]), - "variable": np.array(["different"]), # Should be ignored - "lat": np.linspace(0, 90, 100), # Should be ignored - "lon": np.linspace(0, 180, 200), # Should be ignored - } - ) - # Only "ensemble" and "time" from target_coords should be used for tiling - result, result_coords = tile_coords(x, coords, target_coords) - assert result.shape == (3, 4, 2, 721, 1440) - assert np.array_equal(result_coords["variable"], coords["variable"]) - assert np.array_equal(result_coords["lat"], coords["lat"]) - assert np.array_equal(result_coords["lon"], coords["lon"]) - - # Test: single dimension x - x = torch.randn(721) - coords = OrderedDict({"lat": np.linspace(90, -90, 721)}) - target_coords = OrderedDict( - { - "ensemble": np.array([0, 1, 2]), - "time": np.array([1, 2, 3, 4]), - "lat": np.linspace(0, 90, 100), # Should be ignored - } - ) - result, result_coords = tile_coords(x, coords, target_coords) - assert result.shape == (3, 4, 721) - assert "lat" in result_coords - assert np.array_equal(result_coords["lat"], coords["lat"]) - - # Test: empty tensors (0-sized dimensions) - x = torch.randn(0, 721, 1440) - coords = OrderedDict( - { - "variable": np.array([]), # Empty array - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - target_coords = OrderedDict( - { - "ensemble": np.array([0, 1, 2]), - "time": np.array([1, 2, 3, 4]), - "variable": np.array([1, 2, 3]), # Should be ignored - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - result, result_coords = tile_coords(x, coords, target_coords) - assert result.shape == (3, 4, 0, 721, 1440) - assert len(result_coords["variable"]) == 0 - - # Test: mismatched coordinate values (common dims use coords values) - x = torch.randn(2, 10) - coords = OrderedDict( - { - "a": np.array([0, 1]), - "b": np.arange(10), - } - ) - target_coords = OrderedDict( - { - "c": np.array([0, 1, 2]), - "a": np.array([10, 20]), # Should be ignored - "b": np.arange(10, 20), # Should be ignored - } - ) - result, result_coords = tile_coords(x, coords, target_coords) - assert result.shape == (3, 2, 10) - assert np.array_equal(result_coords["a"], coords["a"]) - assert np.array_equal(result_coords["b"], coords["b"]) - - -def test_tile_coords_validation(): - """Test that tile_coords validates new dims lead common dims""" - x = torch.randn(2, 10) - coords = OrderedDict( - { - "a": np.array([0, 1]), - "b": np.arange(10), - } - ) - - # Valid: new dims before common dims - target_coords = OrderedDict( - { - "c": np.array([0, 1, 2]), - "a": np.array([10, 20]), - "b": np.arange(10, 20), - } - ) - result, _ = tile_coords(x, coords, target_coords) - assert result.shape == (3, 2, 10) - - # Invalid: new dim after common dim - target_coords_bad = OrderedDict( - { - "a": np.array([10, 20]), - "c": np.array([0, 1, 2]), # New dim after common dim - "b": np.arange(10, 20), - } - ) - with pytest.raises(ValueError): - tile_coords(x, coords, target_coords_bad) - - -def test_cat_coords(): - xx = torch.randn(1, 2, 721, 1440) - cox = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["u10m", "v10m"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - yy = torch.randn(1, 1, 721, 1440) - coy = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["msl"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - result, result_coords = cat_coords((xx, yy), (cox, coy), dim="variable") - - assert result.shape == (1, 3, 721, 1440) - assert len(result_coords["variable"]) == 3 - assert np.array_equal(result_coords["variable"], ["u10m", "v10m", "msl"]) - - -def test_cat_coords_different_dims(): - """Test concatenation along different dimensions""" - # Test concatenation along "time" dimension - xx = torch.randn(2, 3, 721, 1440) - cox = OrderedDict( - { - "time": np.array([0, 1]), - "variable": np.array(["u10m", "v10m", "msl"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - yy = torch.randn(1, 3, 721, 1440) - coy = OrderedDict( - { - "time": np.array([2]), - "variable": np.array(["u10m", "v10m", "msl"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - result, result_coords = cat_coords((xx, yy), (cox, coy), dim="time") - assert result.shape == (3, 3, 721, 1440) - assert len(result_coords["time"]) == 3 - assert np.array_equal(result_coords["time"], [0, 1, 2]) - - # Test concatenation along "batch" dimension - xx = torch.randn(2, 3, 721, 1440) - cox = OrderedDict( - { - "batch": np.array([0, 1]), - "variable": np.array(["u10m", "v10m", "msl"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - yy = torch.randn(1, 3, 721, 1440) - coy = OrderedDict( - { - "batch": np.array([2]), - "variable": np.array(["u10m", "v10m", "msl"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - result, result_coords = cat_coords((xx, yy), (cox, coy), dim="batch") - assert result.shape == (3, 3, 721, 1440) - assert len(result_coords["batch"]) == 3 - assert np.array_equal(result_coords["batch"], [0, 1, 2]) - - -def test_cat_coords_multiple(): - xx = torch.randn(1, 1, 721, 1440) - cox = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["u10m"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - yy = torch.randn(1, 1, 721, 1440) - coy = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["v10m"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - zz = torch.randn(1, 1, 721, 1440) - coz = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["msl"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - result, result_coords = cat_coords((xx, yy, zz), (cox, coy, coz), dim="variable") - assert result.shape == (1, 3, 721, 1440) - assert len(result_coords["variable"]) == 3 - assert np.array_equal(result_coords["variable"], ["u10m", "v10m", "msl"]) - - -def test_cat_coords_single(): - """Test concatenation with a single tensor (should return as-is)""" - xx = torch.randn(1, 2, 721, 1440) - cox = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["u10m", "v10m"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - result, result_coords = cat_coords((xx,), (cox,), dim="variable") - assert torch.equal(result, xx) # Should return the same tensor - for dim in cox.keys(): - assert np.all(result_coords[dim] == cox[dim]) - - -def test_cat_coords_errors(): - """Test error cases for cat_coords""" - # Test length mismatch - xx = torch.randn(1, 2, 721, 1440) - cox = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["u10m", "v10m"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - yy = torch.randn(1, 1, 721, 1440) - coy = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["msl"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - with pytest.raises(ValueError): - cat_coords((xx, yy), (cox,), dim="variable") - - # Test empty input - with pytest.raises(ValueError): - cat_coords((), (), dim="variable") - - xx = torch.randn(1, 2, 721, 1440) - cox = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["u10m", "v10m"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - yy = torch.randn(1, 1, 721, 1440) - coy = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["msl"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - - # Test missing dimension in first coords (handshake_dim on cox) - with pytest.raises(KeyError): - cat_coords((xx, yy), (cox, coy), dim="nonexistent") - - # Test cox has extra dim (key-equality check catches mismatched dimension sets) - cox_with_extra = cox.copy() - cox_with_extra["extra_dim"] = np.array([0]) - xx_extra = torch.randn(1, 2, 1, 721, 1440) - with pytest.raises(KeyError): - cat_coords((xx_extra, yy), (cox_with_extra, coy), dim="extra_dim") - - # Test mismatched non-cat coords (handshake_coords catches shape mismatch) - yy_bad = torch.randn(1, 1, 361, 1440) - coy_bad = OrderedDict( - { - "time": np.array([0]), - "variable": np.array(["msl"]), - "lat": np.linspace(90, -90, 361), - "lon": np.linspace(0, 360, 1440), - } - ) - with pytest.raises(ValueError): - cat_coords((xx, yy_bad), (cox, coy_bad), dim="variable") - - # Test mismatched dimension names - yy_bad = torch.randn(1, 1, 361, 1440) - coy_bad = OrderedDict( - { - "lead_time": np.array([0]), - "variable": np.array(["msl"]), - "lat": np.linspace(90, -90, 721), - "lon": np.linspace(0, 360, 1440), - } - ) - with pytest.raises(ValueError): - cat_coords((xx, yy_bad), (cox, coy_bad), dim="variable") diff --git a/tox-full.ini b/tox-full.ini index 58b3a0c4f..a2c79803d 100644 --- a/tox-full.ini +++ b/tox-full.ini @@ -47,8 +47,6 @@ package = editable basepython = python3.12 passenv = EARTH2STUDIO_CACHE - EARTH2STUDIO_DATA_CACHE - EARTH2STUDIO_MODEL_CACHE EARTH2STUDIO_PACKAGE_TIMEOUT TESTMON_DATAFILE UV_CACHE_DIR diff --git a/tox.ini b/tox.ini index 98e5ef839..f3ae05d6b 100644 --- a/tox.ini +++ b/tox.ini @@ -9,8 +9,6 @@ envlist = test-stats test-px-models test-dx-models - test-da-models - test-px-models-ace2 [testenv] # Base configuration for all environments @@ -20,8 +18,6 @@ package = editable basepython = python3.12 passenv = EARTH2STUDIO_CACHE - EARTH2STUDIO_DATA_CACHE - EARTH2STUDIO_MODEL_CACHE EARTH2STUDIO_PACKAGE_TIMEOUT TESTMON_DATAFILE UV_CACHE_DIR @@ -56,7 +52,11 @@ description = Run tests for the serve extras = serve commands = pytest {posargs:-s --cov --cov-append --slow --testmon} \ - test/serve + test/serve/test_config.py \ + test/serve/test_cleanup_daemon.py \ + test/serve/test_cpu_worker.py \ + test/serve/test_main.py \ + test/serve/test_workflow.py [testenv:test-data] runner = uv-venv-lock-runner @@ -100,21 +100,6 @@ commands = pytest {posargs:-s --cov --cov-append --slow --package --testmon} \ test/models/dx -[testenv:test-da-models] -runner = uv-venv-lock-runner -description 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'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "pytz" }, + { name = "rasterio", version = "1.4.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, + { name = "rasterio", version = "1.5.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, + { name = "rioxarray", version = "0.19.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, + { name = "rioxarray", version = "0.20.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, { name = "ruamel-yaml" }, { name = "scikit-image" }, { name = "scipy" }, { name = "timm" }, - { name = "torch-harmonics", version = "0.8.0", source = { registry = "https://pypi.org/simple" }, marker = "extra == 'extra-12-earth2studio-ace2'" }, - { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" }, marker = "extra == 'extra-12-earth2studio-atlas' or extra == 'extra-12-earth2studio-fcn3' or extra == 'extra-12-earth2studio-perturbation' or extra == 'extra-12-earth2studio-sfno' or extra != 'extra-12-earth2studio-ace2'" }, + { name = "torch-harmonics" }, ] atlas = [ { name = "einops" }, { name = "natten" }, { name = "nvidia-physicsnemo" }, + { name = "pytz" }, { name = "timm" }, - { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" } }, + { name = "torch-harmonics" }, ] aurora = [ { name = "microsoft-aurora" }, ] cbottle = [ - { name = "cbottle", marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "cbottle", marker = "python_full_version >= '3.12'" }, { name = "earth2grid" }, ] corrdiff = [ { name = "einops" }, { name = "nvidia-physicsnemo" }, { name = "nvtx" }, + { name = "pytz" }, { name = "scipy" }, ] cyclone = [ @@ -1707,35 +1806,24 @@ da-interp = [ { name = "cudf-cu12" }, { name = "cupy-cuda12x" }, ] -da-stormcast = [ - { name = "cudf-cu12" }, - { name = "cupy-cuda12x" }, - { name = "einops" }, - { name = "nvidia-physicsnemo" }, - { name = "nvtx" }, - { name = "omegaconf" }, - { name = "pyproj" }, - { name = "scipy" }, -] data = [ { name = "cdsapi" }, { name = "cfgrib" }, { name = "eccodes" }, - { name = "eccodeslib" }, { name = "ecmwf-opendata" }, { name = "globus-sdk" }, { name = "httpx" }, - { name = "intake-esgf", version = "2025.10.22", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, - { name = "intake-esgf", version = "2026.1.26", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "intake-esgf", version = "2025.10.22", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, + { name = "intake-esgf", version = "2026.1.26", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, { name = "multi-storage-client", extra = ["boto3", "fsspec", "google-cloud-storage"] }, { name = "pandas" }, { name = "planetary-computer" }, { name = "pyproj" }, { name = "pystac-client" }, - { name = "rasterio", version = "1.4.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, - { name = "rasterio", version = "1.5.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, - { name = "rioxarray", version = "0.19.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, - { name = "rioxarray", version = "0.20.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "rasterio", version = "1.4.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, + { name = "rasterio", version = "1.5.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, + { name = "rioxarray", version = "0.19.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, + { name = "rioxarray", version = "0.20.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, { name = "scipy" }, ] dlesym = [ @@ -1743,20 +1831,24 @@ dlesym = [ { name = "hydra-core" }, { name = "nvidia-physicsnemo" }, { name = "omegaconf" }, + { name = "pytz" }, ] dlwp = [ { name = "importlib-metadata" }, { name = "nvidia-physicsnemo" }, + { name = "pytz" }, ] fcn = [ { name = "nvidia-physicsnemo" }, + { name = "pytz" }, ] fcn3 = [ { name = "makani" }, { name = "moviepy" }, + { name = "pytz" }, { name = "ruamel-yaml" }, { name = "scipy" }, - { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" } }, + { name = "torch-harmonics" }, ] fengwu = [ { name = "onnx" }, @@ -1777,6 +1869,7 @@ graphcast = [ ] interp-modafno = [ { name = "nvidia-physicsnemo" }, + { name = "pytz" }, ] pangu = [ { name = "onnx" }, @@ -1785,29 +1878,32 @@ pangu = [ ] perturbation = [ { name = "scipy" }, - { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" } }, + { name = "torch-harmonics" }, ] precip-afno = [ { name = "nvidia-physicsnemo" }, + { name = "pytz" }, ] precip-afno-v2 = [ { name = "nvidia-physicsnemo" }, + { name = "pytz" }, ] serve = [ { name = "aiofiles" }, + { name = "azure-identity" }, + { name = "azure-storage-blob" }, + { name = "cryptography" }, { name = "fastapi" }, { name = "hiredis" }, { name = "httpx" }, { name = "hydra-core" }, + { name = "multi-storage-client" }, { name = "prometheus-client" }, { name = "pydantic" }, { name = "python-dotenv" }, { name = "python-multipart" }, { name = "redis" }, - { name = "requests" }, { name = "rq" }, - { name = "types-redis" }, - { name = "urllib3" }, { name = "uvicorn", extra = ["standard"] }, ] sfno = [ @@ -1816,13 +1912,15 @@ sfno = [ { name = "pynvml" }, { name = "ruamel-yaml" }, { name = "scipy" }, - { name = "torch-harmonics", version = "0.8.1", source = { git = "https://github.com/NVIDIA/torch-harmonics.git?rev=a632ca748a12bd9f74dbc1e00653317810991f74#a632ca748a12bd9f74dbc1e00653317810991f74" } }, + { name = "torch-harmonics" }, ] solarradiation-afno = [ { name = "nvidia-physicsnemo" }, + { name = "pytz" }, ] statistics = [ { name = "nvidia-physicsnemo" }, + { name = "pytz" }, ] stormcast = [ { name = "einops" }, @@ -1830,6 +1928,7 @@ stormcast = [ { name = "nvtx" }, { name = "omegaconf" }, { name = "pyproj" }, + { name = "pytz" }, { name = "scipy" }, ] stormscope = [ @@ -1837,6 +1936,7 @@ stormscope = [ { name = "natten" }, { name = "nvidia-physicsnemo" }, { name = "nvtx" }, + { name = "pytz" }, { name = "scipy" }, ] utils = [ @@ -1845,6 +1945,7 @@ utils = [ ] windgust-afno = [ { name = "nvidia-physicsnemo" }, + { name = "pytz" }, ] [package.dev-dependencies] @@ -1870,7 +1971,6 @@ dev = [ { name = "ruff" }, { name = "tox" }, { name = "tox-uv" }, - { name = "types-redis" }, { name = "types-requests" }, ] docs = [ @@ -1878,12 +1978,12 @@ docs = [ { name = "jupytext" }, { name = "matplotlib" }, { name = "myst-parser" }, - { name = "nvidia-sphinx-theme" }, + { name = "pydata-sphinx-theme" }, { name = "scipy" }, - { name = "sphinx", version = "9.0.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, - { name = "sphinx", version = "9.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, - { name = "sphinx-autodoc-typehints", version = "3.6.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, - { name = "sphinx-autodoc-typehints", version = "3.7.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12' or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-atlas') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-fcn3') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-perturbation') or (extra == 'extra-12-earth2studio-ace2' and extra == 'extra-12-earth2studio-sfno')" }, + { name = "sphinx", version = "9.0.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, + { name = "sphinx", version = "9.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, + { name = "sphinx-autodoc-typehints", version = "3.6.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" }, + { name = "sphinx-autodoc-typehints", version = "3.7.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" }, { name = "sphinx-design" }, { name = "sphinx-favicon" }, { name = "sphinx-gallery" }, @@ -1896,22 +1996,22 @@ requires-dist = [ { name = "anemoi-models", marker = "extra == 'aifs'", specifier = "==0.5.1" }, { name = "anemoi-models", marker = "extra == 'aifsens'", specifier = "==0.5.1" }, { name = "anemoi-models", marker = "extra == 'all'", specifier = "==0.5.1" }, - { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'all'", git = "https://github.com/NVlabs/cBottle.git?rev=8b8b358466e6b2f50d1779009790002ceb596e72" }, - { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'cbottle'", git = "https://github.com/NVlabs/cBottle.git?rev=8b8b358466e6b2f50d1779009790002ceb596e72" }, + { name = "azure-identity", marker = "extra == 'serve'", specifier = ">=1.15.0" }, + { name = "azure-storage-blob", marker = "extra == 'serve'", specifier = ">=12.19.0" }, + { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'all'", git = "https://github.com/NVlabs/cBottle.git?rev=1d4435abe730d6b966e983633b466b345d60ac78" }, + { name = "cbottle", marker = "python_full_version >= '3.12' and extra == 'cbottle'", git = "https://github.com/NVlabs/cBottle.git?rev=1d4435abe730d6b966e983633b466b345d60ac78" }, { name = "cdsapi", marker = "extra == 'all'", specifier = ">=0.7.5" }, { name = "cdsapi", marker = "extra == 'data'", specifier = ">=0.7.5" }, { name = "cfgrib", marker = "extra == 'all'", git = "https://github.com/NickGeneva/cfgrib.git?rev=6a9af3173d7050b5fa5d221755f97e6ecb8c3433" }, { name = "cfgrib", marker = "extra == 'data'", git = "https://github.com/NickGeneva/cfgrib.git?rev=6a9af3173d7050b5fa5d221755f97e6ecb8c3433" }, { name = "cftime" }, + { name = "cryptography", marker = "extra == 'serve'", specifier = ">=41.0.0" }, { name = "cucim-cu12", marker = "extra == 'all'", specifier = ">=25.4.0" }, { name = "cucim-cu12", marker = "extra == 'cyclone'", specifier = ">=25.4.0" }, - { name = "cudf-cu12", marker = "extra == 'all'", specifier = "==26.2.*" }, { name = "cudf-cu12", marker = "extra == 'da-interp'", specifier = "==26.2.*" }, - { name = "cudf-cu12", marker = "extra == 'da-stormcast'", specifier = "==26.2.*" }, { name = "cupy-cuda12x", marker = "extra == 'all'", specifier = "<14.0.0" }, { name = "cupy-cuda12x", marker = "extra == 'cyclone'", specifier = "<14.0.0" }, { name = "cupy-cuda12x", marker = "extra == 'da-interp'", specifier = "<14.0.0" }, - { name = "cupy-cuda12x", marker = "extra == 'da-stormcast'", specifier = "<14.0.0" }, { name = "dm-haiku", marker = "extra == 'all'", specifier = ">=0.0.14" }, { name = "dm-haiku", marker = "extra == 'graphcast'", specifier = ">=0.0.14" }, { name = "dm-tree", marker = "extra == 'all'", specifier = ">=0.1.9" }, @@ -1924,10 +2024,8 @@ requires-dist = [ { name = "earthkit-regrid", marker = "extra == 'aifs'", specifier = "==0.4.0" }, { name = "earthkit-regrid", marker = "extra == 'aifsens'", specifier = "==0.4.0" }, { name = "earthkit-regrid", marker = "extra == 'all'", specifier = "==0.4.0" }, - { name = "eccodes", marker = "extra == 'all'", specifier = ">=2.39.2" }, - { name = "eccodes", marker = "extra == 'data'", specifier = ">=2.39.2" }, - { name = "eccodeslib", marker = "extra == 'all'", specifier = ">=2.39.2" }, - { name = "eccodeslib", marker = "extra == 'data'", specifier = ">=2.39.2" }, + { name = "eccodes", marker = "extra == 'all'", specifier = ">=2.38.0" }, + { name = "eccodes", marker = "extra == 'data'", specifier = ">=2.38.0" }, { name = "ecmwf-opendata", marker = "extra == 'aifs'", specifier = ">=0.3.3" }, { name = "ecmwf-opendata", marker = "extra == 'aifsens'", specifier = ">=0.3.3" }, { name = "ecmwf-opendata", marker = "extra == 'all'", specifier = ">=0.3.3" }, @@ -1936,7 +2034,6 @@ requires-dist = [ { name = "einops", marker = "extra == 'all'", specifier = ">=0.8.1" }, { name = "einops", marker = "extra == 'atlas'" }, { name = "einops", marker = "extra == 'corrdiff'", specifier = ">=0.8.1" }, - { name = "einops", marker = "extra == 'da-stormcast'", specifier = ">=0.8.1" }, { name = "einops", marker = "extra == 'stormcast'", specifier = ">=0.8.1" }, { name = "fastapi", marker = "extra == 'serve'", specifier = ">=0.104.0" }, { name = "flash-attn", marker = "extra == 'aifs'" }, @@ -1945,6 +2042,7 @@ requires-dist = [ { name = "flax", marker = "extra == 'all'", specifier = ">=0.10.6" }, { name = "flax", marker = "extra == 'graphcast'", specifier = ">=0.10.6" }, { name = "fme", marker = "extra == 'ace2'", git = "https://github.com/ai2cm/ace.git?rev=e211cad3e1a5cff0fa84e8d2f0ee67042eff3d4d" }, + { name = "fme", marker = "extra == 'all'", git = "https://github.com/ai2cm/ace.git?rev=e211cad3e1a5cff0fa84e8d2f0ee67042eff3d4d" }, { name = "fsspec", specifier = ">=2024.2.0" }, { name = "gcsfs" }, { name = "globus-sdk", marker = "extra == 'all'", specifier = "<4.0.0" }, @@ -1953,6 +2051,8 @@ requires-dist = [ { name = "graphcast", marker = "extra == 'graphcast'", git = "https://github.com/google-deepmind/graphcast.git?rev=7077d40a36db6541e3ed72ccaed1c0d202fa6014" }, { name = "h5netcdf", specifier = ">=1.0.0" }, { name = "h5py", specifier = ">=3.2.0" }, + { name = "h5py", marker = "extra == 'ace2'", specifier = "<=3.14.0" }, + { name = "h5py", marker = "extra 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