Merge pull request #396 from NeuroML/experimental

 To v1.3.2 and use jnml v0.13.2; pinning numpy<2.0

Author: pgleeson

.github/workflows/ci.yml

@@ -7,7 +7,7 @@ on:
       - development
       - experimental
       - 'test*'
-  pull_request_target:
+  pull_request:
     branches:
       - master
       - development
@@ -18,8 +18,6 @@ jobs:
   build:
 
     runs-on: ubuntu-latest
-    permissions:
-      pull-requests: write
     strategy:
       matrix:
         python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
@@ -41,6 +39,7 @@ jobs:
     - name: Upgrade pip, install deps
       run: |
         python -m pip install --upgrade pip
+        pip install 'numpy<2.0.0' # due to lingering issues with other modules
         pip install .[dev]
 
     - name: List packages so far
@@ -52,24 +51,3 @@ jobs:
         pynml -h
 
         ./test-ghactions.sh -neuron
-
-    - name: Code Coverage Summary
-      uses: irongut/CodeCoverageSummary@v1.3.0
-      if: ${{ matrix.python-version == '3.12' }}
-      with:
-        output: both
-        filename: coverage.xml
-        badge: true
-        format: markdown
-        indicators: true
-        fail_below_min: false
-        hide_complexity: true
-        hide_branch_rate: true
-        thresholds: '50 75'
-
-    - name: Add Coverage PR Comment
-      uses: marocchino/sticky-pull-request-comment@v2
-      if: ${{ github.event_name == 'pull_request_target' && matrix.python-version == '3.12' }}
-      with:
-        recreate: true
-        path: code-coverage-results.md

pyneuroml/__init__.py

@@ -12,7 +12,7 @@
     __version__ = importlib_metadata.version("pyNeuroML")
 
 
-JNEUROML_VERSION = "0.13.1"
+JNEUROML_VERSION = "0.13.2"
 
 # Define a logger for the package
 logging.basicConfig(

pyneuroml/lib/jNeuroML-0.13.2-jar-with-dependencies.jar

@@ -1,6 +1,6 @@
 [metadata]
 name = pyNeuroML
-version = 1.3.1
+version = 1.3.2
 author = Padraig Gleeson
 author_email = p.gleeson@gmail.com
 url = https://github.com/NeuroML/pyNeuroML
@@ -32,6 +32,7 @@ install_requires =
     graphviz
     typing; python_version<"3.5"
     lxml
+    numpy<2.0.0
     sympy
     ppft[dill]
 
@@ -96,7 +97,7 @@ vispy-common =
     vispy>=0.13.0
     scipy
     pyopengl
-    PyOpenGL-accelerate
+    PyOpenGL-accelerate; python_version<"3.12"
 
 vispy-qt5 =
     pyNeuroML[vispy-common]