MyoGen/pyproject.toml at main · NsquaredLab/MyoGen · GitHub

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[project]
name = "MyoGen"
version = "0.8.5"
description = "Modular and extensible neuromuscular simulation framework for generating physiologically grounded motor-unit activity, muscle force, and EMG signals (surface and intramuscular)"
readme = "README.md"
requires-python = ">=3.12"
license = "AGPL-3.0-or-later"
authors = [
    {name = "Raul C. Sîmpetru", email = "raul.simpetru@fau.de"},
    {name = "Renato Naville Watanabe", email = "renato.navillewatanabe@gmail.com"},
]
maintainers = [
    {name = "Raul C. Sîmpetru", email = "raul.simpetru@fau.de"},
]
keywords = ["EMG", "electromyography", "neuromuscular", "simulation", "motor-unit", "NEURON", "neuroscience"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Operating System :: POSIX :: Linux",
    "Operating System :: MacOS",
    "Operating System :: Microsoft :: Windows",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3 :: Only",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
]
dependencies = [
    "beartype>=0.21.0",
    "cython>=3.1.3",
    "elephant>=1.1.1",
    "impi-rt>=2021.15.0 ; sys_platform == 'win32'",
    "matplotlib>=3.10.1",
    "mpi4py>=4.0.3",
    "neuron==8.2.7 ; sys_platform == 'linux' or sys_platform == 'darwin'",
    #"neuron-gpu-nightly>=9.0a0",
    #"neuron-nightly>=9.0a1.dev1492",
    "numba>=0.61.2",
    "numpy>=1.26,<2.0",
    "optuna>=4.5.0",
    "quantities>=0.16.2",
    "scienceplots>=2.1.1",
    "scikit-fmm>=2025.1.29",
    "scikit-learn>=1.6.1",
    "scipy>=1.15.3",
    "seaborn>=0.13.2",
    "setuptools>=80.9.0",
    "tqdm>=4.67.1",
    "viziphant>=0.4.0",
]

[project.optional-dependencies]
nwb = [
    "pynwb>=2.8.0",
    "nwbinspector>=0.5.0",
]

[project.urls]
Homepage = "https://nsquaredlab.github.io/MyoGen/"
Documentation = "https://nsquaredlab.github.io/MyoGen/"
Repository = "https://github.com/NsquaredLab/MyoGen"
Issues = "https://github.com/NsquaredLab/MyoGen/issues"
Changelog = "https://github.com/NsquaredLab/MyoGen/blob/main/CHANGELOG.md"

[tool.ty.rules]
invalid-syntax-in-forward-annotation = "ignore"
possibly-unbound-import = "ignore"

[dependency-groups]
dev = [
    "pandas-stubs>=2.3.0.250703",
    "poethepoet>=0.37.0",
    "scipy-stubs>=1.16.1.0",
]
docs = [
    "enum-tools[sphinx]>=0.12.0",
    "linkify-it-py>=2.0.3",
    "memory-profiler>=0.61.0",
    "pydata-sphinx-theme>=0.16.1",
    "pygments>=2.19.2",
    "rinohtype>=0.5.5",
    "roman>=5.2",
    "sphinx>=8.1.3",
    "sphinx-autodoc-typehints>=2.5.0",
    "sphinx-design>=0.6.1",
    "sphinx-gallery>=0.19.0",
    "sphinx-hoverxref>=1.4.1",
    "sphinxcontrib-mermaid>=1.0.0",
    "toml>=0.10.2",
    # NWB support for examples
    "pynwb>=2.8.0",
    "nwbinspector>=0.5.0",
]

[tool.poe.tasks]
setup_myogen = "python -c 'from myogen import _setup_myogen; _setup_myogen()'"

[build-system]
requires = ["setuptools>=61.0", "Cython>=3.0.0", "numpy==1.26.4", "scipy==1.16.3"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
where = ["."]
include = ["myogen*"]

[tool.setuptools.package-data]
myogen = [
    "**/*.pyx",
    "**/*.pxd",
    "**/*.c",
    "**/*.h",
    "**/*.cpp",
    "**/*.mod",
    "**/*.dll",
    "**/*.so",
    "**/*.o",
    "**/*.yaml",
    "**/*.csv",
    "**/x86_64/*",
    "**/x86_64/.libs/*",
    "**/aarch64/*",
    "**/aarch64/.libs/*",
    "**/arm64/*",
    "**/arm64/.libs/*",
]