Error when trying to open GUI

[hagneeptatt]

AttributeError: '_tkinter.tkapp' object has no attribute 'plotting_methods'

Initializing GUI
Initializing widgets
Initializing advanced_filtering_addin (afa)
Initializing repl_outliers_addin (roa)
Initializing sig2noise_addin (s2n)
Initializing user_function_addin (ufa)
Initializing pandas_plotting_addin (ppa)
Traceback (most recent call last):
File "", line 198, in _run_module_as_main
File "", line 88, in run_code
File "C:\Users\Programs\Python\Python312\Lib\site-packages\openpivgui\OpenPivGui.py", line 1320, in
openPivGui = OpenPivGui()
^^^^^^^^^^^^
File "C:\Users\Programs\Python\Python312\Lib\site-packages\openpivgui\OpenPivGui.py", line 158, in init
AddInHandler.init_add_ins(self)
File "C:\Users\Programs\Python\Python312\Lib\site-packages\openpivgui\AddInHandler.py", line 29, in init_add_ins
add_in_instance = getattr(add_in_file, add_in)(gui)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\Local\Programs\Python\Python312\Lib\site-packages\openpivgui\AddIns\pandas_plotting_addin_plotting.py", line 188, in init
gui.plotting_methods.update(
^^^^^^^^^^^^^^^^^^^^
File "C:\Users\Local\Programs\Python\Python312\Lib\tkinter_init.py", line 2430, in getattr
return getattr(self.tk, attr)
^^^^^^^^^^^^^^^^^^^^^^
AttributeError: '_tkinter.tkapp' object has no attribute 'plotting_methods'

[alexlib]

Please make sure you reinstall the package with the correct version of openpiv and openpiv_tk_gui on the correct Python version. see Readme

[hagneeptatt]

Thank you, it seems to open now, however when running on my images I get the following error:

PIV evaluation thread stopped. module 'numpy' has no attribute 'int'.
np.int was a deprecated alias for the builtin int. To avoid this error in existing code, use int by itself. Doing this will not modify any behavior and is safe. When replacing np.int, you may wish to use e.g. np.int64 or np.int32 to specify the precision. If you wish to review your current use, check the release note link for additional information.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations

[alexlib]

please use a new virtual environment, install and send the installation log. my guess is that something is not matched - we solved this problem already

[hagneeptatt]

`(base) C:\Users\Bioprocessing>conda create -n openpivgui python=3.12
Channels:

• defaults
  Platform: win-64
  Collecting package metadata (repodata.json): done
  Solving environment: done

Package Plan

environment location: C:\Users\Bioprocessing\anaconda3\envs\openpivgui

added / updated specs:
- python=3.12

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
bzip2-1.0.8                |       h2bbff1b_6          90 KB
ca-certificates-2024.3.11  |       haa95532_0         128 KB
expat-2.6.2                |       hd77b12b_0         260 KB
libffi-3.4.4               |       hd77b12b_1         122 KB
openssl-3.0.13             |       h2bbff1b_2         7.5 MB
pip-24.0                   |  py312haa95532_0         3.5 MB
python-3.12.3              |       h1d929f7_1        16.3 MB
setuptools-69.5.1          |  py312haa95532_0         1.3 MB
sqlite-3.45.3              |       h2bbff1b_0         973 KB
tk-8.6.14                  |       h0416ee5_0         3.5 MB
tzdata-2024a               |       h04d1e81_0         116 KB
vc-14.2                    |       h2eaa2aa_1          10 KB
vs2015_runtime-14.29.30133 |       h43f2093_3         1.1 MB
wheel-0.43.0               |  py312haa95532_0         167 KB
xz-5.4.6                   |       h8cc25b3_1         609 KB
zlib-1.2.13                |       h8cc25b3_1         131 KB
------------------------------------------------------------
                                       Total:        35.7 MB

The following NEW packages will be INSTALLED:

bzip2 pkgs/main/win-64::bzip2-1.0.8-h2bbff1b_6
ca-certificates pkgs/main/win-64::ca-certificates-2024.3.11-haa95532_0
expat pkgs/main/win-64::expat-2.6.2-hd77b12b_0
libffi pkgs/main/win-64::libffi-3.4.4-hd77b12b_1
openssl pkgs/main/win-64::openssl-3.0.13-h2bbff1b_2
pip pkgs/main/win-64::pip-24.0-py312haa95532_0
python pkgs/main/win-64::python-3.12.3-h1d929f7_1
setuptools pkgs/main/win-64::setuptools-69.5.1-py312haa95532_0
sqlite pkgs/main/win-64::sqlite-3.45.3-h2bbff1b_0
tk pkgs/main/win-64::tk-8.6.14-h0416ee5_0
tzdata pkgs/main/noarch::tzdata-2024a-h04d1e81_0
vc pkgs/main/win-64::vc-14.2-h2eaa2aa_1
vs2015_runtime pkgs/main/win-64::vs2015_runtime-14.29.30133-h43f2093_3
wheel pkgs/main/win-64::wheel-0.43.0-py312haa95532_0
xz pkgs/main/win-64::xz-5.4.6-h8cc25b3_1
zlib pkgs/main/win-64::zlib-1.2.13-h8cc25b3_1

Proceed ([y]/n)? y

Downloading and Extracting Packages:

Preparing transaction: done
Verifying transaction: done
Executing transaction: done

To activate this environment, use

$ conda activate openpivgui

To deactivate an active environment, use

$ conda deactivate

(base) C:\Users\Bioprocessing>conda activate openpivgui

(openpivgui) C:\Users\Bioprocessing>pip --no-cache-dir install git+https://github.com/alexlib/openpiv-python-0.23.8
Collecting git+https://github.com/alexlib/openpiv-python-0.23.8
Cloning https://github.com/alexlib/openpiv-python-0.23.8 to c:\users\bioprocessing\appdata\local\temp\pip-req-build-7nzzlb33
Running command git clone --filter=blob:none --quiet https://github.com/alexlib/openpiv-python-0.23.8 'C:\Users\Bioprocessing\AppData\Local\Temp\pip-req-build-7nzzlb33'
Resolved https://github.com/alexlib/openpiv-python-0.23.8 to commit a5a28f13d354f4dd3675f1b100b3e81419b2b198
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting numpy (from OpenPIV==0.23.8)
Downloading numpy-1.26.4-cp312-cp312-win_amd64.whl.metadata (61 kB)
---------------------------------------- 61.0/61.0 kB 1.6 MB/s eta 0:00:00
Collecting imageio (from OpenPIV==0.23.8)
Downloading imageio-2.34.1-py3-none-any.whl.metadata (4.9 kB)
Collecting matplotlib>=3 (from OpenPIV==0.23.8)
Downloading matplotlib-3.9.0-cp312-cp312-win_amd64.whl.metadata (11 kB)
Collecting scikit-image (from OpenPIV==0.23.8)
Downloading scikit_image-0.23.2-cp312-cp312-win_amd64.whl.metadata (14 kB)
Collecting scipy (from OpenPIV==0.23.8)
Downloading scipy-1.13.1-cp312-cp312-win_amd64.whl.metadata (60 kB)
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Collecting natsort (from OpenPIV==0.23.8)
Downloading natsort-8.4.0-py3-none-any.whl.metadata (21 kB)
Collecting GitPython (from OpenPIV==0.23.8)
Downloading GitPython-3.1.43-py3-none-any.whl.metadata (13 kB)
Collecting pytest (from OpenPIV==0.23.8)
Downloading pytest-8.2.2-py3-none-any.whl.metadata (7.6 kB)
Collecting watermark (from OpenPIV==0.23.8)
Downloading watermark-2.4.3-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting tqdm (from OpenPIV==0.23.8)
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Collecting contourpy>=1.0.1 (from matplotlib>=3->OpenPIV==0.23.8)
Downloading contourpy-1.2.1-cp312-cp312-win_amd64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib>=3->OpenPIV==0.23.8)
Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib>=3->OpenPIV==0.23.8)
Downloading fonttools-4.53.0-cp312-cp312-win_amd64.whl.metadata (165 kB)
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Collecting kiwisolver>=1.3.1 (from matplotlib>=3->OpenPIV==0.23.8)
Downloading kiwisolver-1.4.5-cp312-cp312-win_amd64.whl.metadata (6.5 kB)
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Collecting ipython>=6.0 (from watermark->OpenPIV==0.23.8)
Downloading ipython-8.25.0-py3-none-any.whl.metadata (4.9 kB)
Collecting importlib-metadata>=1.4 (from watermark->OpenPIV==0.23.8)
Downloading importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
Requirement already satisfied: setuptools in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from watermark->OpenPIV==0.23.8) (69.5.1)
Collecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->GitPython->OpenPIV==0.23.8)
Downloading smmap-5.0.1-py3-none-any.whl.metadata (4.3 kB)
Collecting zipp>=0.5 (from importlib-metadata>=1.4->watermark->OpenPIV==0.23.8)
Downloading zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB)
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Downloading decorator-5.1.1-py3-none-any.whl.metadata (4.0 kB)
Collecting jedi>=0.16 (from ipython>=6.0->watermark->OpenPIV==0.23.8)
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Collecting matplotlib-inline (from ipython>=6.0->watermark->OpenPIV==0.23.8)
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Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython>=6.0->watermark->OpenPIV==0.23.8)
Downloading prompt_toolkit-3.0.46-py3-none-any.whl.metadata (6.4 kB)
Collecting pygments>=2.4.0 (from ipython>=6.0->watermark->OpenPIV==0.23.8)
Downloading pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
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Collecting traitlets>=5.13.0 (from ipython>=6.0->watermark->OpenPIV==0.23.8)
Downloading traitlets-5.14.3-py3-none-any.whl.metadata (10 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib>=3->OpenPIV==0.23.8)
Downloading six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython>=6.0->watermark->OpenPIV==0.23.8)
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Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython>=6.0->watermark->OpenPIV==0.23.8)
Downloading wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB)
Collecting executing>=1.2.0 (from stack-data->ipython>=6.0->watermark->OpenPIV==0.23.8)
Downloading executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting asttokens>=2.1.0 (from stack-data->ipython>=6.0->watermark->OpenPIV==0.23.8)
Downloading asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB)
Collecting pure-eval (from stack-data->ipython>=6.0->watermark->OpenPIV==0.23.8)
Downloading pure_eval-0.2.2-py3-none-any.whl.metadata (6.2 kB)
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Downloading numpy-1.26.4-cp312-cp312-win_amd64.whl (15.5 MB)
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Downloading GitPython-3.1.43-py3-none-any.whl (207 kB)
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Downloading imageio-2.34.1-py3-none-any.whl (313 kB)
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Downloading natsort-8.4.0-py3-none-any.whl (38 kB)
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Downloading scipy-1.13.1-cp312-cp312-win_amd64.whl (45.9 MB)
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Downloading tqdm-4.66.4-py3-none-any.whl (78 kB)
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Downloading watermark-2.4.3-py2.py3-none-any.whl (7.6 kB)
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Downloading cycler-0.12.1-py3-none-any.whl (8.3 kB)
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Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
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Downloading tifffile-2024.5.22-py3-none-any.whl (225 kB)
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Downloading colorama-0.4.6-py2.py3-none-any.whl (25 kB)
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Downloading pure_eval-0.2.2-py3-none-any.whl (11 kB)
Downloading wcwidth-0.2.13-py2.py3-none-any.whl (34 kB)
Building wheels for collected packages: OpenPIV
Building wheel for OpenPIV (pyproject.toml) ... done
Created wheel for OpenPIV: filename=OpenPIV-0.23.8-py3-none-any.whl size=22323150 sha256=a7519201163470bf47bb65dbee7f170946e3b4273fc60a44c1781ef06c406ef1
Stored in directory: C:\Users\Bioprocessing\AppData\Local\Temp\pip-ephem-wheel-cache-hcf2t26y\wheels\f2\17\4d\f11b4a669c4b2293337a57fc03eff5c700e82de1b780c2b21e
Successfully built OpenPIV
Installing collected packages: wcwidth, pure-eval, zipp, traitlets, smmap, six, pyparsing, pygments, prompt-toolkit, pluggy, pillow, parso, packaging, numpy, networkx, natsort, kiwisolver, iniconfig, fonttools, executing, decorator, cycler, colorama, tqdm, tifffile, scipy, python-dateutil, pytest, matplotlib-inline, lazy-loader, jedi, importlib-metadata, imageio, gitdb, contourpy, asttokens, stack-data, scikit-image, matplotlib, GitPython, ipython, watermark, OpenPIV
Successfully installed GitPython-3.1.43 OpenPIV-0.23.8 asttokens-2.4.1 colorama-0.4.6 contourpy-1.2.1 cycler-0.12.1 decorator-5.1.1 executing-2.0.1 fonttools-4.53.0 gitdb-4.0.11 imageio-2.34.1 importlib-metadata-7.1.0 iniconfig-2.0.0 ipython-8.25.0 jedi-0.19.1 kiwisolver-1.4.5 lazy-loader-0.4 matplotlib-3.9.0 matplotlib-inline-0.1.7 natsort-8.4.0 networkx-3.3 numpy-1.26.4 packaging-24.0 parso-0.8.4 pillow-10.3.0 pluggy-1.5.0 prompt-toolkit-3.0.46 pure-eval-0.2.2 pygments-2.18.0 pyparsing-3.1.2 pytest-8.2.2 python-dateutil-2.9.0.post0 scikit-image-0.23.2 scipy-1.13.1 six-1.16.0 smmap-5.0.1 stack-data-0.6.3 tifffile-2024.5.22 tqdm-4.66.4 traitlets-5.14.3 watermark-2.4.3 wcwidth-0.2.13 zipp-3.19.2

(openpivgui) C:\Users\Bioprocessing>pip --no-cache-dir install openpivgui
Collecting openpivgui
Downloading openpivgui-0.4.14-py3-none-any.whl.metadata (3.0 kB)
Requirement already satisfied: OpenPiv==0.23.8 in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from openpivgui) (0.23.8)
Collecting pandas (from openpivgui)
Downloading pandas-2.2.2-cp312-cp312-win_amd64.whl.metadata (19 kB)
Requirement already satisfied: numpy in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from OpenPiv==0.23.8->openpivgui) (1.26.4)
Requirement already satisfied: imageio in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from OpenPiv==0.23.8->openpivgui) (2.34.1)
Requirement already satisfied: matplotlib>=3 in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from OpenPiv==0.23.8->openpivgui) (3.9.0)
Requirement already satisfied: scikit-image in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from OpenPiv==0.23.8->openpivgui) (0.23.2)
Requirement already satisfied: scipy in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from OpenPiv==0.23.8->openpivgui) (1.13.1)
Requirement already satisfied: natsort in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from OpenPiv==0.23.8->openpivgui) (8.4.0)
Requirement already satisfied: GitPython in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from OpenPiv==0.23.8->openpivgui) (3.1.43)
Requirement already satisfied: pytest in c:\users\bioprocessing\anaconda3\envs\openpivgui\lib\site-packages (from OpenPiv==0.23.8->openpivgui) (8.2.2)
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[hagneeptatt]

I got it to work in the virual environemt, seems to process my images very well, but unfortunately the vector plots do not show - all other plots show fine including contour plots.

[alexlib]

I got it to work in the virual environemt, seems to process my images very well, but unfortunately the vector plots do not show - all other plots show fine including contour plots.

@eguvep - could you please take a lookt? i'm not sure whether it's a openpiv or gui.

[hagneeptatt]

Hi Alex, any update on this, is it a problem just with the gui? Still having the same issue with the vector plots.

I get the following error on the command line:
Traceback (most recent call last): File "C:\Users\Bioprocessing\anaconda3\envs\openpivgui\Lib\tkinter\__init__.py", line 1967, in __call__ return self.func(*args) ^^^^^^^^^^^^^^^^ File "C:\Users\Bioprocessing\anaconda3\envs\openpivgui\Lib\site-packages\openpivgui\OpenPivGui.py", line 891, in __listbox_selection_changed self.show(self.p['fnames'][self.index]) File "C:\Users\Bioprocessing\anaconda3\envs\openpivgui\Lib\site-packages\openpivgui\OpenPivGui.py", line 1192, in show vec_plot.vector( File "C:\Users\Bioprocessing\anaconda3\envs\openpivgui\Lib\site-packages\openpivgui\vec_plot.py", line 222, in vector data = data.to_numpy().astype(np.float) ^^^^^^^^ File "C:\Users\Bioprocessing\anaconda3\envs\openpivgui\Lib\site-packages\numpy\__init__.py", line 338, in __getattr__ raise AttributeError(__former_attrs__[attr]) AttributeError: module 'numpy' has no attribute 'float'. np.floatwas a deprecated alias for the builtinfloat. To avoid this error in existing code, use floatby itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, usenp.float64 here. The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations. Did you mean: 'cfloat'?

[alexlib]

Hi Alex, any update on this, is it a problem just with the gui? Still having the same issue with the vector plots.

@hagneeptatt yes - we fixed it, it's not yet on pypi server, meanwhile use

pip install git+https://github.com/openpiv/openpiv_tk_gui --upgrade

in your virtual environment.

[hagneeptatt]

Amazing, thank you, it's working well now. Do you have any documentation on how I can plot reynold's stresses from my velocity vector data?

[alexlib]

see https://github.com/alexlib/pivpy

[hagneeptatt]

Amazing, the gui is now working well with my data. However, I am looking at extracting average velocity data (I also can no longer see the velocity histogram in the plots tab), is this a bug with the gui?

[alexlib]

@hagneeptatt why do you think it's a bug? is there a printed error message?

[hagneeptatt]

@alexlib Before the update I was able to see histograms for velocity, not sure if it is a bug or intentional that its missing now?

[alexlib]

Nothing is intentional - we didn't remove features as far as I know. If you press some button and it does not work - please give us the small sample to try on (maybe it's in the data and not in the code) and the list of procedures to verify that we can reproduce the error.

[hagneeptatt]

test.zip

OK thanks for offering to take a look. see attached zip with relevant images. It's not that I'm pressing a button that doesn't work, but the option to show a velocity histogram no longer exists in the plotting window