|
| 1 | +title: About the PlasmaPy Project |
| 2 | +author: Nick Murphy |
| 3 | +hidetitle: False |
| 4 | + |
| 5 | +# Papers, theses, and preprints that reference PlasmaPy |
| 6 | + |
| 7 | +<!-- If exporting references from NASA ADS, use the following custom format: |
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| 9 | +- %o (%Y). [%T](https://doi.org/%d), %J, %V, %p, doi: %d |
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| 12 | + |
| 13 | + - W. T. Barnes, S. J. Bradshaw, & N. M. Viall (2019). [Understanding Heating in Active Region Cores through Machine Learning. I. Numerical Modeling and Predicted Observables](https://doi.org/10.3847/1538-4357/ab290c), The Astrophysical Journal, 880, 56, doi: 10.3847/1538-4357/ab290c |
| 14 | + - J. Barnum, A. Masson, R. H. W. Friedel, A. Roberts, & B. A. Thomas (2023). [Python in Heliophysics Community (PyHC): Current status and future outlook](https://doi.org/10.1016/j.asr.2022.10.006), Advances in Space Research, 72, 5636, doi: 10.1016/j.asr.2022.10.006 |
| 15 | + - C. Chen, E. S. Lavine, W. M. Potter, C. E. Seyler, & B. R. Kusse (2024). [Axial confinement of wire array Z-pinch precursor plasmas by a pulsed magnetic mirror field](https://doi.org/10.1063/5.0207561), Physics of Plasmas, 31, 072704, doi: 10.1063/5.0207561 |
| 16 | + - L. Creamer (2024), [Dimensionlessly Comparing Hydrogen and Helium Plasmas at LAPD](https://scholarworks.wm.edu/honorstheses/2228), Undergraduate Honors Thesis, William & Mary. Paper 2228. |
| 17 | + - L. A. Daneshmand, M. Aszalos, S. Feister, & J. R. Smith (2024). [Intensity and Dimensionality-Dependent Dynamics of Laser-Proton Acceleration in 1D, 2D, and 3D Particle-in-Cell Simulations](https://doi.org/10.48550/arXiv.2408.10386), arXiv e-prints, arXiv:2408.10386, doi: 10.48550/arXiv.2408.10386 |
| 18 | + - J. R. Davies & P. V. Heuer (2022). [Evaluation of direct inversion of proton radiographs in the context of cylindrical implosions](https://doi.org/10.48550/arXiv.2203.00495), arXiv e-prints, arXiv:2203.00495, doi: 10.48550/arXiv.2203.00495 |
| 19 | + - M. DuPont, C. Shen, & N. A. Murphy (2020). [Comparative Analysis of the Solar Wind: Modeling Charge State Distributions in the Heliosphere](https://doi.org/10.48550/arXiv.2012.12297), arXiv e-prints, arXiv:2012.12297, doi: 10.48550/arXiv.2012.12297 |
| 20 | + - S. Eisenbach, D. A. Mariscal, R. S. Dorst, T. Van Hoomissen, A. M. Ortiz, H. Zhang, J. J. Pilgram, C. G. Constantin, L. Rovige, P. V. Heuer, D. B. Schaeffer, & C. Niemann (2025). [Machine learning analysis of high-repetition-rate two-dimensional Thomson scattering spectra from laser-produced plasmas](https://doi.org/10.1088/1361-6463/ad89d6), Journal of Physics D Applied Physics, 58, 035202, doi: 10.1088/1361-6463/ad89d6 |
| 21 | + - A. D. Feinstein, K. France, A. Youngblood, G. M. Duvvuri, D. J. Teal, P. W. Cauley, D. Z. Seligman, E. Gaidos, E. M.-R. Kempton, J. L. Bean, H. Diamond-Lowe, E. Newton, S. Ginzburg, P. Plavchan, P. Gao, & H. Schlichting (2022). [AU Microscopii in the Far-UV: Observations in Quiescence, during Flares, and Implications for AU Mic b and c](https://doi.org/10.3847/1538-3881/ac8107), The Astronomical Journal, 164, 110, doi: 10.3847/1538-3881/ac8107 |
| 22 | + - B. C. Foo, D. B. Schaeffer, & P. V. Heuer (2023). [Recovering non-Maxwellian particle velocity distribution functions from collective Thomson-scattered spectra](https://doi.org/10.1063/5.0169393), AIP Advances, 13, 115328, doi: 10.1063/5.0169393 |
| 23 | + - P. V. Heuer, L. S. Leal, J. R. Davies, E. C. Hansen, D. H. Barnak, J. L. Peebles, F. García-Rubio, B. Pollock, J. Moody, A. Birkel, & F. H. Seguin (2022). [Diagnosing magnetic fields in cylindrical implosions with oblique proton radiography](https://doi.org/10.1063/5.0092652), Physics of Plasmas, 29, 072708, doi: 10.1063/5.0092652 |
| 24 | + - J. Jara-Almonte, N. A. Murphy, & H. Ji (2021). [Multi-fluid and kinetic models of partially ionized magnetic reconnection](https://doi.org/10.1063/5.0039860), Physics of Plasmas, 28, 042108, doi: 10.1063/5.0039860 |
| 25 | + - E. Johnson, B. A. Maruca, M. McManus, K. G. Klein, E. R. Lichko, J. Verniero, K. W. Paulson, H. DeWeese, I. Dieguez, R. A. Qudsi, J. Kasper, M. Stevens, B. L. Alterman, L. B. Wilson, R. Livi, A. Rahmati, & D. Larson (2023). [Anterograde Collisional Analysis of Solar Wind Ions](https://doi.org/10.3847/1538-4357/accc32), The Astrophysical Journal, 950, 51, doi: 10.3847/1538-4357/accc32 |
| 26 | + - E. Johnson, B. A. Maruca, M. McManus, M. Stevens, K. G. Klein, & P. Mostafavi (2024). [Application of collisional analysis to the differential velocity of solar wind ions](https://doi.org/10.3389/fspas.2023.1284913), Frontiers in Astronomy and Space Sciences, 10, 1284913, doi: 10.3389/fspas.2023.1284913 |
| 27 | + - E. Johnson (2024). [Coulomb Collisional Analysis of Solar Wind Ions](https://www.proquest.com/openview/e59dda046bf3bf1a626a09db7e4593aa/1?pq-origsite=gscholar&cbl=18750&diss=y), Ph.D. thesis, University of Delaware |
| 28 | + - S. Jubin, A. T. Powis, W. Villafana, D. Sydorenko, S. Rauf, A. V. Khrabrov, S. Sarwar, & I. D. Kaganovich (2024). [Numerical thermalization in 2D PIC simulations: Practical estimates for low-temperature plasma simulations](https://doi.org/10.1063/5.0180421), Physics of Plasmas, 31, 023902, doi: 10.1063/5.0180421 |
| 29 | + - P. M. Kozlowski, R. C. Mancini, & M. E. Koepke (2018). [Feasibility Study for Implementing an Optical Thomson Scattering System for Studying Photoionized Plasmas on Z](https://doi.org/10.1109/TPS.2018.2862347), IEEE Transactions on Plasma Science, 46, 3912, doi: 10.1109/TPS.2018.2862347 |
| 30 | + - E. Krämer, M. Hamrin, H. Gunell, T. Karlsson, K. Steinvall, O. Goncharov, & M. André (2023). [Waves in Magnetosheath Jets—Classification and the Search for Generation Mechanisms Using MMS Burst Mode Data](https://doi.org/10.1029/2023JA031621), Journal of Geophysical Research (Space Physics), 128, e2023JA031621, doi: 10.1029/2023JA031621 |
| 31 | + - V. Marascu, M. I. Mihailescu, & V. Barna (2023). [Challenges of Computational Methods Towards Physics Phenomena Studies](https://rrp.nipne.ro/2023/AN75907.pdf), 75, 907 |
| 32 | + - B. A. Maruca, J. A. Agudelo Rueda, R. Bandyopadhyay, F. B. Bianco, A. Chasapis, R. Chhiber, H. DeWeese, W. H. Matthaeus, D. M. Miles, R. A. Qudsi, M. J. Richardson, S. Servidio, M. A. Shay, D. Sundkvist, D. Verscharen, S. K. Vines, J. H. Westlake, & R. T. Wicks (2021). [MagneToRE: Mapping the 3-D Magnetic Structure of the Solar Wind Using a Large Constellation of Nanosatellites](https://doi.org/10.3389/fspas.2021.665885), Frontiers in Astronomy and Space Science, 8, 665885, doi: 10.3389/fspas.2021.665885 |
| 33 | + - A. Murphy & J. Morelli (2023). [Design of an asymmetrically biased triple Langmuir probe and accompanying diagnostics tool](https://ojs.library.ubc.ca/index.php/cjur/article/view/198594), Canadian Journal of Undergraduate Research, 8, 1 |
| 34 | + - J. J. Pilgram, C. G. Constantin, H. Zhang, P. Tzeferacos, T. G. Bachmann, L. Rovige, P. V. Heuer, M. B. P. Adams, S. Ghazaryan, M. Kaloyan, R. S. Dorst, M. J.-E. Manuel, & C. Niemann (2024). [Two-dimensional Thomson scattering measurements of misaligned electron density and temperature gradients and associated Biermann battery produced fields](https://doi.org/10.1063/5.0201112), Physics of Plasmas, 31, 042113, doi: 10.1063/5.0201112 |
| 35 | + - M. Pokornik, D. P. Higginson, G. Swadling, D. Larson, K. Moczulski, B. Pollock, E. Tubman, P. Tzeferacos, H. S. Park, F. Beg, A. Arefiev, & M. Manuel (2024). [A deep learning approach to fast analysis of collective Thomson scattering spectra](https://doi.org/10.1063/5.0201148), Physics of Plasmas, 31, 072115, doi: 10.1063/5.0201148 |
| 36 | + - S. Polson, R. Ringuette, L. Rastaetter, E. Grimes, J. Niehof, N. A. Murphy, & Y. Zheng (2023). [Making an executable paper with the Python in Heliophysics Community to foster open science and improve reproducibility](https://doi.org/10.3389/fspas.2022.977781), Frontiers in Astronomy and Space Sciences, 9, 977781, doi: 10.3389/fspas.2022.977781 |
| 37 | + - R. A. Qudsi (2021). [On the interplay between microkinetics and turbulence in space plasmas](https://www.proquest.com/openview/48769fc082d4fb47760a61cb9eda7d6d/1?pq-origsite=gscholar&cbl=18750&diss=y), Ph.D. thesis, University of Delaware |
| 38 | + - J. C. Raymond, M. Asgari-Targhi, M. L. Wilson, Y. J. Rivera, S. T. Lepri, & C. Shen (2022). [Dropouts of Fully Stripped Ions in the Solar Wind: A Diagnostic for Wave Heating versus Reconnection](https://doi.org/10.3847/1538-4357/ac8976), The Astrophysical Journal, 936, 175, doi: 10.3847/1538-4357/ac8976 |
| 39 | + - G. Rigon, C. Stoeckl, T. M. Johnson, J. Katz, J. Peebles, & C. K. Li (2024). [Development of a platform for experimental and computational studies of magnetic and radiative effects on astrophysically relevant jets at OMEGA](https://doi.org/10.1063/5.0196254), Physics of Plasmas, 31, 042902, doi: 10.1063/5.0196254 |
| 40 | + - D. B. Schaeffer, A. F. A. Bott, M. Borghesi, K. A. Flippo, W. Fox, J. Fuchs, C. Li, F. H. Séguin, H.-S. Park, P. Tzeferacos, & L. Willingale (2023). [Proton imaging of high-energy-density laboratory plasmas](https://doi.org/10.1103/RevModPhys.95.045007), Reviews of Modern Physics, 95, 045007, doi: 10.1103/RevModPhys.95.045007 |
| 41 | + - R. A. Simpson, D. A. Mariscal, J. Kim, N. Lemos, E. S. Grace, K. K. Swanson, G. G. Scott, B. Z. Djordjevic, & T. Ma (2023). [Investigation of boosted proton energies through proton radiography of target normal sheath acceleration fields in the multi-ps regime](https://doi.org/10.1063/5.0157214), Physics of Plasmas, 30, 103103, doi: 10.1063/5.0157214 |
| 42 | + - C. P. Stylianidis (2019). [Fast ion detection in collective Thomson scattering spectra with neural networks](https://research.tue.nl/en/studentTheses/fast-ion-detection-in-collective-thomson-scattering-spectra-with-), Master's thesis, Eindhoven University of Technology |
| 43 | + - M. L. Wilson, J. C. Raymond, S. T. Lepri, R. Lionello, N. A. Murphy, K. K. Reeves, & C. Shen (2022). [Constraining the CME Core Heating and Energy Budget with SOHO/UVCS](https://doi.org/10.3847/1538-4357/ac4d35), The Astrophysical Journal, 927, 27, doi: 10.3847/1538-4357/ac4d35 |
| 44 | + - H. Zhang, J. J. Pilgram, C. G. Constantin, L. Rovige, P. V. Heuer, S. Ghazaryan, M. Kaloyan, R. S. Dorst, D. B. Schaeffer, & C. Niemann (2023). [Two-dimensional Thomson scattering in high-repetition-rate laser-plasma experiments](https://doi.org/10.48550/arXiv.2305.07843), arXiv e-prints, arXiv:2305.07843, doi: 10.48550/arXiv.2305.07843 |
| 45 | + - H. Zhang, J. J. Pilgram, C. G. Constantin, L. Rovige, P. V. Heuer, S. Ghazaryan, M. Kaloyan, R. S. Dorst, D. B. Schaeffer, & C. Niemann (2023). [Two-Dimensional Thomson Scattering in Laser-Produced Plasmas](https://doi.org/10.3390/instruments7030025), Instruments, 7, 3, doi: 10.3390/instruments7030025 |
| 46 | + |
| 47 | +## Papers and community reports that otherwise reference PlasmaPy |
| 48 | + |
| 49 | + - Astropy Collaboration, A. M. Price-Whelan, P. L. Lim, N. Earl, N. Starkman, L. Bradley, D. L. Shupe, A. A. Patil, L. Corrales, C. E. Brasseur, M. Nöthe, A. Donath, E. Tollerud, B. M. Morris, A. Ginsburg, E. Vaher, B. A. Weaver, J. Tocknell, W. Jamieson, M. H. van Kerkwijk, T. P. Robitaille, B. Merry, M. Bachetti, H. M. Günther, T. L. Aldcroft, J. A. Alvarado-Montes, A. M. Archibald, A. Bódi, S. Bapat, G. Barentsen, J. Bazán, M. Biswas, M. Boquien, D. J. Burke, D. Cara, M. Cara, K. E. Conroy, S. Conseil, M. W. Craig, R. M. Cross, K. L. Cruz, F. D'Eugenio, N. Dencheva, H. A. R. Devillepoix, J. P. Dietrich, A. D. Eigenbrot, T. Erben, L. Ferreira, D. Foreman-Mackey, R. Fox, N. Freij, S. Garg, R. Geda, L. Glattly, Y. Gondhalekar, K. D. Gordon, D. Grant, P. Greenfield, A. M. Groener, S. Guest, S. Gurovich, R. Handberg, A. Hart, Z. Hatfield-Dodds, D. Homeier, G. Hosseinzadeh, T. Jenness, C. K. Jones, P. Joseph, J. B. Kalmbach, E. Karamehmetoglu, M. Kałuszyński, M. S. P. Kelley, N. Kern, W. E. Kerzendorf, E. W. Koch, S. Kulumani, A. Lee, C. Ly, Z. Ma, C. MacBride, J. M. Maljaars, D. Muna, N. A. Murphy, H. Norman, R. O'Steen, K. A. Oman, C. Pacifici, S. Pascual, J. Pascual-Granado, R. R. Patil, G. I. Perren, T. E. Pickering, T. Rastogi, B. R. Roulston, D. F. Ryan, E. S. Rykoff, J. Sabater, P. Sakurikar, J. Salgado, A. Sanghi, N. Saunders, V. Savchenko, L. Schwardt, M. Seifert-Eckert, A. Y. Shih, A. S. Jain, G. Shukla, J. Sick, C. Simpson, S. Singanamalla, L. P. Singer, J. Singhal, M. Sinha, B. M. Sipőcz, L. R. Spitler, D. Stansby, O. Streicher, J. Šumak, J. D. Swinbank, D. S. Taranu, N. Tewary, G. R. Tremblay, M. de Val-Borro, S. J. Van Kooten, Z. Vasović, S. Verma, J. V. de Miranda Cardoso, P. K. G. Williams, T. J. Wilson, B. Winkel, W. M. Wood-Vasey, R. Xue, P. Yoachim, C. Zhang, A. Zonca, & Astropy Project Contributors (2022). [The Astropy Project: Sustaining and Growing a Community-oriented Open-source Project and the Latest Major Release (v5.0) of the Core Package](https://doi.org/10.3847/1538-4357/ac7c74), The Astrophysical Journal, 935, 167, doi: 10.3847/1538-4357/ac7c74 |
| 50 | + - S. Baalrud, N. Ferraro, L. Garrison, N. Howard, C. Kuranz, J. Sarff, & W. Solomon (2020). [A Community Plan for Fusion Energy and Discovery Plasma Sciences](https://doi.org/10.48550/arXiv.2011.04806), arXiv e-prints, arXiv:2011.04806, doi: 10.48550/arXiv.2011.04806 |
| 51 | + - J. Barnum, A. Masson, R. H. W. Friedel, A. Roberts, & B. A. Thomas (2023). [Python in Heliophysics Community (PyHC): Current status and future outlook](https://doi.org/10.1016/j.asr.2022.10.006), Advances in Space Research, 72, 5636, doi: 10.1016/j.asr.2022.10.006 |
| 52 | + - D. R. Bouquin, D. A. Chivvis, E. Henneken, K. Lockhart, A. Muench, & J. Koch (2020). [Credit Lost: Two Decades of Software Citation in Astronomy](https://doi.org/10.3847/1538-4365/ab7be6), The Astrophysical Journal Supplement Series, 249, 8, doi: 10.3847/1538-4365/ab7be6 |
| 53 | + - A. G. Burrell, A. Halford, J. Klenzing, R. A. Stoneback, S. K. Morley, A. M. Annex, K. M. Laundal, A. C. Kellerman, D. Stansby, & J. Ma (2018). [Snakes on a Spaceship—An Overview of Python in Heliophysics](https://doi.org/10.1029/2018JA025877), Journal of Geophysical Research (Space Physics), 123, 10,384, doi: 10.1029/2018JA025877 |
| 54 | + - S. F. Fung, A. Masson, L. F. Bargatze, T. King, R. Ringuette, R. M. Candey, C. Wiegand, L. K. Jian, D. De Zeeuw, K. Muglach, R. M. McGranaghan, D. Aaron Roberts, B. Cecconi, N. André, V. Génot, J. Vandegriff, & M. A. Reiss (2023). [SPASE metadata as a building block of a heliophysics science-enabling framework](https://doi.org/10.1016/j.asr.2023.09.066), Advances in Space Research, 72, 5707, doi: 10.1016/j.asr.2023.09.066 |
| 55 | + - A. S. Joglekar & M. C. Levy (2020). [VlaPy: A Python package for Eulerian |
| 56 | +Vlasov-Poisson-Fokker-Planck Simulations](https://doi.org/10.21105/joss.02182), Journal of Open Source Software, 5, 53, doi: 10.21105/joss.02182 |
| 57 | + - R. Kube, R. M. Churchill, J. Y. Choi, R. Wang, S. Klasky, C. S. Chang, M. J. Choi, & J. Park (2020). [Leading magnetic fusion energy science into the big-and-fast data lane](https://pdfs.semanticscholar.org/68fe/2f24dc35963f899de0042a072a93355a3269.pdf), Proceedings of the 19th Python in Science Conf. (SciPy 2020), 140. |
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