diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
deleted file mode 100644
index de0c122a..00000000
--- a/.github/workflows/deploy.yml
+++ /dev/null
@@ -1,46 +0,0 @@
-# This file was created automatically with `myst init --gh-pages` πͺ π
-
-name: MyST GitHub Pages Deploy
-on:
- push:
- # Runs on pushes targeting the default branch
- branches: [main]
-env:
- # `BASE_URL` determines the website is served from, including CSS & JS assets
- # You may need to change this to `BASE_URL: ''`
- BASE_URL: /${{ github.event.repository.name }}
-
-# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
-permissions:
- contents: read
- pages: write
- id-token: write
-# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
-# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
-concurrency:
- group: 'pages'
- cancel-in-progress: false
-jobs:
- deploy:
- environment:
- name: github-pages
- url: ${{ steps.deployment.outputs.page_url }}
- runs-on: ubuntu-latest
- steps:
- - uses: actions/checkout@v4
- - name: Setup Pages
- uses: actions/configure-pages@v3
- - uses: actions/setup-node@v4
- with:
- node-version: 18.x
- - name: Install MyST Markdown
- run: npm install -g mystmd
- - name: Build HTML Assets
- run: myst build --html
- - name: Upload artifact
- uses: actions/upload-pages-artifact@v1
- with:
- path: './_build/html'
- - name: Deploy to GitHub Pages
- id: deployment
- uses: actions/deploy-pages@v2
diff --git a/.github/workflows/nightly-build.yaml b/.github/workflows/nightly-build.yaml
new file mode 100644
index 00000000..990e7eba
--- /dev/null
+++ b/.github/workflows/nightly-build.yaml
@@ -0,0 +1,19 @@
+name: nightly-build
+
+on:
+ workflow_dispatch:
+ schedule:
+ - cron: "0 0 * * *" # Daily βAt 00:00β
+
+jobs:
+ build:
+ if: ${{ github.repository_owner == 'ProjectPythia' }}
+ uses: ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml@main
+
+ deploy:
+ needs: build
+ uses: ProjectPythia/cookbook-actions/.github/workflows/deploy-book.yaml@main
+
+ link-check:
+ if: ${{ github.repository_owner == 'ProjectPythia' }}
+ uses: ProjectPythia/cookbook-actions/.github/workflows/link-checker.yaml@main
diff --git a/.github/workflows/publish-book.yaml b/.github/workflows/publish-book.yaml
new file mode 100644
index 00000000..4e7fd1ee
--- /dev/null
+++ b/.github/workflows/publish-book.yaml
@@ -0,0 +1,16 @@
+name: publish-book
+
+on:
+ # Trigger the workflow on push to main branch
+ push:
+ branches:
+ - main
+ workflow_dispatch:
+
+jobs:
+ build:
+ uses: ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml@main
+
+ deploy:
+ needs: build
+ uses: ProjectPythia/cookbook-actions/.github/workflows/deploy-book.yaml@main
diff --git a/.github/workflows/trigger-book-build.yaml b/.github/workflows/trigger-book-build.yaml
new file mode 100644
index 00000000..c2b08f34
--- /dev/null
+++ b/.github/workflows/trigger-book-build.yaml
@@ -0,0 +1,11 @@
+name: trigger-book-build
+on:
+ pull_request:
+
+jobs:
+ build:
+ uses: ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml@main
+ with:
+ artifact_name: book-zip-${{ github.event.number }}
+ base_url: '/${{ github.event.repository.name }}/_preview/${{ github.event.number }}'
+ # Other input options are possible, see ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml
diff --git a/.github/workflows/trigger-delete-preview.yaml b/.github/workflows/trigger-delete-preview.yaml
new file mode 100644
index 00000000..06e13e5c
--- /dev/null
+++ b/.github/workflows/trigger-delete-preview.yaml
@@ -0,0 +1,9 @@
+name: trigger-delete-preview
+
+on:
+ pull_request_target:
+ types: closed
+
+jobs:
+ delete:
+ uses: ProjectPythia/cookbook-actions/.github/workflows/delete-preview.yaml@main
diff --git a/.github/workflows/trigger-link-check.yaml b/.github/workflows/trigger-link-check.yaml
new file mode 100644
index 00000000..e2402ddc
--- /dev/null
+++ b/.github/workflows/trigger-link-check.yaml
@@ -0,0 +1,7 @@
+name: trigger-link-check
+on:
+ pull_request:
+
+jobs:
+ link-check:
+ uses: ProjectPythia/cookbook-actions/.github/workflows/link-checker.yaml@main
diff --git a/.github/workflows/trigger-preview.yaml b/.github/workflows/trigger-preview.yaml
new file mode 100644
index 00000000..049b5d0b
--- /dev/null
+++ b/.github/workflows/trigger-preview.yaml
@@ -0,0 +1,27 @@
+name: trigger-preview
+on:
+ workflow_run:
+ workflows:
+ - trigger-book-build
+ types:
+ - requested
+ - completed
+
+jobs:
+ find-pull-request:
+ uses: ProjectPythia/cookbook-actions/.github/workflows/find-pull-request.yaml@main
+ deploy-preview:
+ needs: find-pull-request
+ if: github.event.workflow_run.conclusion == 'success'
+ uses: ProjectPythia/cookbook-actions/.github/workflows/deploy-book.yaml@main
+ with:
+ artifact_name: book-zip-${{ needs.find-pull-request.outputs.number }}
+ destination_dir: _preview/${{ needs.find-pull-request.outputs.number }} # deploy to subdirectory labeled with PR number
+ is_preview: "true"
+
+ preview-comment:
+ needs: find-pull-request
+ uses: ProjectPythia/cookbook-actions/.github/workflows/preview-comment.yaml@main
+ with:
+ pull_request_number: ${{ needs.find-pull-request.outputs.number }}
+ sha: ${{ needs.find-pull-request.outputs.sha }}
diff --git a/.github/workflows/trigger-replace-links.yaml b/.github/workflows/trigger-replace-links.yaml
new file mode 100644
index 00000000..1d1e8547
--- /dev/null
+++ b/.github/workflows/trigger-replace-links.yaml
@@ -0,0 +1,31 @@
+name: trigger-replace-links
+
+on:
+ workflow_dispatch:
+
+jobs:
+ build:
+ runs-on: ubuntu-latest
+ permissions:
+ contents: write
+
+ steps:
+ - uses: actions/checkout@v3
+ - name: Find and Replace Repository Name
+ uses: jacobtomlinson/gha-find-replace@v3
+ with:
+ find: "ProjectPythia/cookbook-template"
+ replace: "${{ github.repository_owner }}/${{ github.event.repository.name }}"
+ regex: false
+ exclude: ".github/workflows/trigger-replace-links.yaml"
+
+ - name: Find and Replace Repository ID
+ uses: jacobtomlinson/gha-find-replace@v3
+ with:
+ find: "475509405"
+ replace: "${{ github.repository_id}}"
+ regex: false
+ exclude: ".github/workflows/trigger-replace-links.yml"
+
+ - name: Push changes
+ uses: stefanzweifel/git-auto-commit-action@v4
diff --git a/.isort.cfg b/.isort.cfg
deleted file mode 100644
index 0fc010f7..00000000
--- a/.isort.cfg
+++ /dev/null
@@ -1,2 +0,0 @@
-[settings]
-known_third_party =
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
deleted file mode 100644
index fe5f4559..00000000
--- a/.pre-commit-config.yaml
+++ /dev/null
@@ -1,52 +0,0 @@
-repos:
- - repo: https://github.com/pre-commit/pre-commit-hooks
- rev: v4.4.0
- hooks:
- - id: trailing-whitespace
- - id: end-of-file-fixer
- - id: check-docstring-first
- - id: check-json
- - id: check-yaml
- - id: double-quote-string-fixer
-
- - repo: https://github.com/psf/black
- rev: 23.7.0
- hooks:
- - id: black
-
- - repo: https://github.com/keewis/blackdoc
- rev: v0.3.8
- hooks:
- - id: blackdoc
-
- - repo: https://github.com/PyCQA/flake8
- rev: 6.0.0
- hooks:
- - id: flake8
-
- - repo: https://github.com/asottile/seed-isort-config
- rev: v2.2.0
- hooks:
- - id: seed-isort-config
-
- - repo: https://github.com/PyCQA/isort
- rev: 5.12.0
- hooks:
- - id: isort
-
- - repo: https://github.com/pre-commit/mirrors-prettier
- rev: v3.0.0
- hooks:
- - id: prettier
- additional_dependencies: [prettier@v2.7.1]
-
- - repo: https://github.com/nbQA-dev/nbQA
- rev: 1.7.0
- hooks:
- - id: nbqa-black
- additional_dependencies: [black]
- - id: nbqa-pyupgrade
- additional_dependencies: [pyupgrade]
- exclude: foundations/quickstart.ipynb
- - id: nbqa-isort
- additional_dependencies: [isort]
diff --git a/README.md b/README.md
index 2be392ab..f43d5ea4 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,7 @@
-
-
# Advanced Visualization Cookbook - MyST Demo
+
+
[](https://binder.projectpythia.org/v2/gh/ProjectPythia/advanced-viz-cookbook.git/main?labpath=notebooks)
[](https://zenodo.org/badge/latestdoi/671205314)
diff --git a/_config.yml b/_config.yml
deleted file mode 100644
index 66eb54cb..00000000
--- a/_config.yml
+++ /dev/null
@@ -1,81 +0,0 @@
-# Book settings
-# Learn more at https://jupyterbook.org/customize/config.html
-
-title: Advanced Visualization Cookbook
-description: Advanced visualization techniques building upon and combining various Python packages.
-author: the Project Pythia Community
-logo: notebooks/images/logos/pythia_logo-white-rtext.svg
-copyright: "2024"
-
-execute:
- # To execute notebooks via a Binder instead, replace 'cache' with 'binder'
- execute_notebooks: cache
- timeout: 600
- allow_errors: False # cells with expected failures must set the `raises-exception` cell tag
-
-# Add a few extensions to help with parsing content
-parse:
- myst_enable_extensions: # default extensions to enable in the myst parser. See https://myst-parser.readthedocs.io/en/latest/using/syntax-optional.html
- - amsmath
- - colon_fence
- - deflist
- - dollarmath
- - html_admonition
- - html_image
- - replacements
- - smartquotes
- - substitution
-
-sphinx:
- config:
- linkcheck_ignore: ["https://doi.org/*", "https://www.noaa.gov/*", "https://weather.uwyo.edu/*"] # don't run link checker on DOI links since they are immutable
- nb_execution_raise_on_error: true # raise exception in build if there are notebook errors (this flag is ignored if building on binder)
- html_favicon: notebooks/images/icons/favicon.ico
- html_last_updated_fmt: "%-d %B %Y"
- html_theme: sphinx_pythia_theme
- html_permalinks_icon: ''
- html_theme_options:
- home_page_in_toc: true
- repository_url: https://github.com/ProjectPythia/advanced-viz-cookbook/ # Online location of your book
- repository_branch: main # Which branch of the repository should be used when creating links (optional)
- use_issues_button: true
- use_repository_button: true
- use_edit_page_button: true
- use_fullscreen_button: true
- analytics:
- google_analytics_id: G-T52X8HNYE8
- github_url: https://github.com/ProjectPythia
- twitter_url: https://twitter.com/project_pythia
- icon_links:
- - name: YouTube
- url: https://www.youtube.com/channel/UCoZPBqJal5uKpO8ZiwzavCw
- icon: fab fa-youtube-square
- type: fontawesome
- launch_buttons:
- binderhub_url: https://binder.projectpythia.org
- notebook_interface: jupyterlab
- logo:
- link: https://projectpythia.org
- navbar_start:
- - navbar-logo
- navbar_end:
- - navbar-icon-links
- navbar_links:
- - name: Home
- url: https://projectpythia.org
- - name: Foundations
- url: https://foundations.projectpythia.org
- - name: Cookbooks
- url: https://cookbooks.projectpythia.org
- - name: Resources
- url: https://projectpythia.org/resource-gallery.html
- - name: Community
- url: https://projectpythia.org/index.html#join-us
- footer_logos:
- NCAR: notebooks/images/logos/NSF-NCAR_Lockup-UCAR-Dark_102523.svg
- Unidata: notebooks/images/logos/Unidata_logo_horizontal_1200x300.svg
- UAlbany: notebooks/images/logos/UAlbany-A2-logo-purple-gold.svg
- footer_start:
- - footer-logos
- - footer-info
- - footer-extra
diff --git a/_static/custom.css b/_static/custom.css
deleted file mode 100644
index 0c9948bd..00000000
--- a/_static/custom.css
+++ /dev/null
@@ -1,6 +0,0 @@
-.bd-main .bd-content .bd-article-container {
- max-width: 100%; /* default is 60em */
- }
- .bd-page-width {
- max-width: 100%; /* default is 88rem */
- }
diff --git a/_static/footer-logo-nsf.png b/_static/footer-logo-nsf.png
deleted file mode 100644
index 11c788f2..00000000
Binary files a/_static/footer-logo-nsf.png and /dev/null differ
diff --git a/_templates/footer-extra.html b/_templates/footer-extra.html
deleted file mode 100644
index 27cb915d..00000000
--- a/_templates/footer-extra.html
+++ /dev/null
@@ -1,27 +0,0 @@
-
\ No newline at end of file
diff --git a/_toc.yml b/_toc.yml
deleted file mode 100644
index 70c721a7..00000000
--- a/_toc.yml
+++ /dev/null
@@ -1,24 +0,0 @@
-format: jb-book
-root: README
-parts:
- - caption: Preamble
- chapters:
- - file: notebooks/how-to-cite
- - caption: Basics of Geoscience Visualization
- chapters:
- - file: notebooks/1-comparison
- - file: notebooks/2-good-viz
- - file: notebooks/3-plot-elements
- - caption: Specialty Plots
- chapters:
- - file: notebooks/4-taylor-diagrams
- - file: notebooks/5-skewt
- - caption: Visualization of Structured Grids
- chapters:
- - file: notebooks/6-spaghetti
- - caption: Animation
- chapters:
- - file: notebooks/7-animation
- - caption: Interactivity
- chapters:
- - file: notebooks/8-interactive-holoviz-mpas
 }}){kind=logo}
- This material is based upon work supported by the National Science
- Foundation under Grant Nos. 2026863 and 2026899. Any opinions, findings,
- and conclusions or recommendations expressed in this material are those
- of the author(s) and do not necessarily reflect the views of the
- National Science Foundation.
-