fix: numpy version & pytc import

Author: akgohain

pyproject.toml

@@ -12,7 +12,7 @@ dependencies = [
     "langchain-community==0.4.1",
     "langchain-ollama==1.0.0",
     "neuroglancer==2.38",
-    "numpy>=1.24",
+    "numpy>=1.24,<2.0",
     "pillow>=10.0",
     "psutil>=5.9.0",
     "python-multipart==0.0.20",
@@ -22,4 +22,8 @@ dependencies = [
     "tensorboard-data-server==0.7.2",
     "uvicorn==0.38.0",
     "zarr>=2.18",
+    "connectomics",
 ]
+
+[tool.uv.sources]
+connectomics = { path = "pytorch_connectomics", editable = true }

scripts/bootstrap.sh

@@ -22,8 +22,7 @@ echo "Preparing pytorch_connectomics dependency..."
 "${ROOT_DIR}/setup_pytorch_connectomics.sh"
 
 if [ -d "${ROOT_DIR}/pytorch_connectomics" ]; then
-    echo "Installing pytorch_connectomics into the uv environment..."
-    uv pip install --directory "${ROOT_DIR}" --editable "${ROOT_DIR}/pytorch_connectomics"
+    echo "pytorch_connectomics directory found."
 fi
 
 echo "Installing frontend dependencies..."