Python 3.12 Support

[van-truong]

Brandon said:

Crashing giving error with methods loading modules for different sources.

[van-truong]

Nikki said:

I got the value error below for the following databases listed. This I think is due to python version error.

ERROR: failed to update mint
File "/Users/nikkipalmiero/venv_vio_11/lib/python3.11/site-packages/biofilter-3.0.0-py3.11.egg/loki/loaders/loki_source_mint.py", line 91, in update
with open('MINT_MiTab.txt','rU') as assocFile:
^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: invalid mode: 'rU'

WARNING: data from these sources was not updated:
entrez
go
gwas
mint
reactome

[van-truong]

Brandon said:

This should be fixed in this repo just needs work around the dynamic loading to fully support 3.12. Tested on 3.11 and everything built locally for me.