diff --git a/input/data/FarmES/animal.json b/input/data/FarmES/animal.json
new file mode 100644
index 0000000000..dabae0ec44
--- /dev/null
+++ b/input/data/FarmES/animal.json
@@ -0,0 +1,486 @@
+{
+  "herd_information": {
+    "calf_num": 25,
+    "heiferI_num": 13,
+    "heiferII_num": 11,
+    "heiferIII_num_springers": 2,
+    "cow_num": 100,
+    "replace_num": 500,
+    "herd_num": 100,
+    "breed": "HO",
+    "parity_fractions": {
+      "1": 0.386,
+      "2": 0.281,
+      "3": 0.17,
+      "4":0.10,
+      "5": 0.06
+    },
+    "annual_milk_yield": 453592.37
+  },
+  "herd_initialization": {
+    "initial_animal_num": 10000,
+    "simulation_days": 5000
+  },
+  "animal_config": {
+    "management_decisions": {
+      "breeding_start_day_h": 400,
+      "heifer_repro_method": "ED",
+      "cow_repro_method": "ED",
+      "semen_type": "conventional",
+      "days_in_preg_when_dry": 218,
+      "heifer_repro_cull_time": 550,
+      "do_not_breed_time": 300,
+      "cull_milk_production": 19.958064280000002,
+      "cow_times_milked_per_day": 3,
+      "milk_fat_percent": 3.5,
+      "milk_protein_percent": 3.6
+    },
+    "farm_level": {
+      "calf": {
+        "male_calf_rate_sexed_semen": 0.6,
+        "male_calf_rate_conventional_semen": 0.6,
+        "keep_female_calf_rate": 1,
+        "wean_day": 60,
+        "wean_length": 7,
+        "milk_type": "whole"
+      },
+      "repro": {
+        "voluntary_waiting_period": 50,
+        "conception_rate_decrease": 0.026,
+        "decrease_conception_rate_in_rebreeding": false,
+        "decrease_conception_rate_by_parity": false,
+        "avg_gestation_len": 276,
+        "std_gestation_len": 6,
+        "prefresh_day": 30,
+        "calving_interval": 404,
+        "heifers": {
+          "estrus_detection_rate": 0.9,
+          "estrus_conception_rate": 0.55,
+          "repro_sub_protocol": "5dCG2P",
+          "repro_sub_properties": {
+            "conception_rate": 0.6,
+            "estrus_detection_rate": 0.9
+          }
+        },
+        "cows": {
+          "estrus_detection_rate": 0.4,
+          "ED_conception_rate": 0.35,
+          "presynch_program": "G6G",
+          "ovsynch_program": "OvSynch 56",
+          "ovsynch_program_conception_rate": 0.35,
+          "resynch_program": "TAIafterPD"
+        }
+      },
+      "bodyweight": {
+        "birth_weight_avg_ho": 43.9,
+        "birth_weight_std_ho": 1,
+        "birth_weight_avg_je": 27.2,
+        "birth_weight_std_je": 1,
+        "target_heifer_preg_day": 399,
+        "mature_body_weight_avg": 739.3555631,
+        "mature_body_weight_std": 73.5
+      }
+    },
+    "from_literature": {
+      "repro": {
+        "preg_check_day_1": 32,
+        "preg_loss_rate_1": 0.02,
+        "preg_check_day_2": 60,
+        "preg_loss_rate_2": 0.096,
+        "preg_check_day_3": 200,
+        "preg_loss_rate_3": 0.017,
+        "avg_estrus_cycle_return": 23,
+        "std_estrus_cycle_return": 6,
+        "avg_estrus_cycle_heifer": 21,
+        "std_estrus_cycle_heifer": 2.5,
+        "avg_estrus_cycle_cow": 21,
+        "std_estrus_cycle_cow": 4,
+        "avg_estrus_cycle_after_pgf": 5,
+        "std_estrus_cycle_after_pgf": 2
+      },
+      "culling": {
+        "cull_day_count": [
+          0,
+          5,
+          15,
+          45,
+          90,
+          135,
+          180,
+          225,
+          270,
+          330,
+          380,
+          430,
+          480,
+          530
+        ],
+        "feet_leg_cull": {
+          "probability": 0.16329999999999997,
+          "cull_day_prob": [
+            0,
+            0.03,
+            0.08,
+            0.16,
+            0.25,
+            0.36,
+            0.48,
+            0.59,
+            0.69,
+            0.78,
+            0.85,
+            0.9,
+            0.95,
+            1
+          ]
+        },
+        "injury_cull": {
+          "probability": 0.2883,
+          "cull_day_prob": [
+            0,
+            0.08,
+            0.18,
+            0.28,
+            0.38,
+            0.47,
+            0.56,
+            0.64,
+            0.71,
+            0.78,
+            0.85,
+            0.9,
+            0.95,
+            1
+          ]
+        },
+        "mastitis_cull": {
+          "probability": 0.2439,
+          "cull_day_prob": [
+            0,
+            0.06,
+            0.12,
+            0.19,
+            0.3,
+            0.43,
+            0.56,
+            0.68,
+            0.78,
+            0.85,
+            0.9,
+            0.94,
+            0.97,
+            1
+          ]
+        },
+        "disease_cull": {
+          "probability": 0.1391,
+          "cull_day_prob": [
+            0,
+            0.04,
+            0.12,
+            0.24,
+            0.34,
+            0.42,
+            0.5,
+            0.57,
+            0.64,
+            0.72,
+            0.81,
+            0.89,
+            0.95,
+            1
+          ]
+        },
+        "udder_cull": {
+          "probability": 0.0645,
+          "cull_day_prob": [
+            0,
+            0.12,
+            0.24,
+            0.33,
+            0.41,
+            0.48,
+            0.55,
+            0.62,
+            0.68,
+            0.76,
+            0.82,
+            0.89,
+            0.95,
+            1
+          ]
+        },
+        "unknown_cull": {
+          "probability": 0.1009,
+          "cull_day_prob": [
+            0,
+            0.05,
+            0.11,
+            0.18,
+            0.27,
+            0.37,
+            0.45,
+            0.54,
+            0.62,
+            0.7,
+            0.77,
+            0.84,
+            0.92,
+            1
+          ]
+        },
+        "parity_death_prob": [
+          0.039,
+          0.056,
+          0.085,
+          0.117
+        ],
+        "parity_cull_prob": [
+          0.16899999999999998,
+          0.233,
+          0.301,
+          0.408
+        ],
+        "death_day_prob": [
+          0,
+          0.18,
+          0.32,
+          0.42,
+          0.48,
+          0.54,
+          0.6,
+          0.65,
+          0.7,
+          0.77,
+          0.83,
+          0.89,
+          0.95,
+          1
+        ]
+      },
+      "life_cycle": {
+        "still_birth_rate": 0.065
+      }
+    }
+  },
+  "methane_mitigation": {
+    "methane_mitigation_method": "None",
+    "methane_mitigation_additive_amount": 0,
+    "3-NOP_additive_amount": 70,
+    "monensin_additive_amount": 24,
+    "essential_oils_additive_amount": 0,
+    "seaweed_additive_amount": 0
+  },
+  "housing": "barn",
+  "pasture_concentrate": 0,
+  "methane_model": {
+    "calves": {
+      "Pattanaik": true
+    },
+    "heiferIs": {
+      "IPCC": true
+    },
+    "heiferIIs": {
+      "IPCC": true
+    },
+    "heiferIIIs": {
+      "IPCC": true
+    },
+    "cows": {
+      "dry cows": {
+        "IPCC": true,
+        "Mills": false
+      },
+      "lactating cows": {
+        "IPCC": true,
+        "Mutian": false,
+        "Mills": false
+      }
+    }
+  },
+  "ration": {
+    "user_input": true,
+    "formulation_interval": 30,
+    "phosphorus_requirement_buffer": 75
+  },
+  "pen_information": [
+    {
+      "id": 0,
+      "pen_name": "Pen #1 - Lactating cows - Part of the year (4928 hours)",
+      "pen_type": "tiestall",
+      "animal_combination": "LAC_COW",
+      "number_of_stalls": 56,
+      "vertical_dist_to_milking_parlor": 0.1,
+      "horizontal_dist_to_milking_parlor": 10,
+      "max_stocking_density": 5,
+      "housing_type": "open air barn",
+      "manure_streams": [
+        {
+          "stream_name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Main - Manure Stream #0",
+          "bedding_name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Main - Manure Stream #0 - Bedding config - none",
+          "stream_proportion": 1,
+          "first_processor": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Main - Manure Stream #0 - Storage - Pasture"
+        }
+      ],
+      "first_parlor_processor": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Parlor - Manure Stream #0 - Manure Handler - Parlor cleaning handler",
+      "parlor_stream_name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Parlor - Manure Stream #0"
+    },
+    {
+      "id": 1,
+      "pen_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours)",
+      "pen_type": "tiestall",
+      "animal_combination": "LAC_COW",
+      "number_of_stalls": 44,
+      "vertical_dist_to_milking_parlor": 0.1,
+      "horizontal_dist_to_milking_parlor": 10,
+      "max_stocking_density": 5,
+      "housing_type": "open air barn",
+      "manure_streams": [
+        {
+          "stream_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Main - Manure Stream #0",
+          "bedding_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Main - Manure Stream #0 - Bedding config - sawdust",
+          "stream_proportion": 1,
+          "first_processor": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Main - Manure Stream #0 - Manure Handler - Manual scraper"
+        }
+      ],
+      "first_parlor_processor": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Parlor - Manure Stream #0 - Manure Handler - Parlor cleaning handler",
+      "parlor_stream_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Parlor - Manure Stream #0"
+    },
+    {
+      "id": 2,
+      "pen_name": "Pen #3 - Dry cows - All year",
+      "pen_type": "tiestall",
+      "animal_combination": "CLOSE_UP",
+      "number_of_stalls": 18,
+      "vertical_dist_to_milking_parlor": 0.1,
+      "horizontal_dist_to_milking_parlor": 8,
+      "max_stocking_density": 5,
+      "housing_type": "open air barn",
+      "manure_streams": [
+        {
+          "stream_name": "Pen #3 - Dry cows - All year - Main - Manure Stream #0",
+          "bedding_name": "Pen #3 - Dry cows - All year - Main - Manure Stream #0 - Bedding config - none",
+          "stream_proportion": 1,
+          "first_processor": "Pen #3 - Dry cows - All year - Main - Manure Stream #0 - Storage - Pasture"
+        }
+      ]
+    },
+    {
+      "id": 3,
+      "pen_name": "Pen #4 - Heifers - All year",
+      "pen_type": "tiestall",
+      "animal_combination": "GROWING",
+      "number_of_stalls": 25,
+      "vertical_dist_to_milking_parlor": 0.1,
+      "horizontal_dist_to_milking_parlor": 12,
+      "max_stocking_density": 5,
+      "housing_type": "open air barn",
+      "manure_streams": [
+        {
+          "stream_name": "Pen #4 - Heifers - All year - Main - Manure Stream #0",
+          "bedding_name": "Pen #4 - Heifers - All year - Main - Manure Stream #0 - Bedding config - none",
+          "stream_proportion": 1,
+          "first_processor": "Pen #4 - Heifers - All year - Main - Manure Stream #0 - Storage - Pasture"
+        }
+      ]
+    },
+    {
+      "id": 4,
+      "pen_name": "Pen #5 - Calves - All year",
+      "pen_type": "bedded pack",
+      "animal_combination": "CALF",
+      "number_of_stalls": 25,
+      "vertical_dist_to_milking_parlor": 0.1,
+      "horizontal_dist_to_milking_parlor": 10,
+      "max_stocking_density": 5,
+      "housing_type": "open air barn",
+      "manure_streams": [
+        {
+          "stream_name": "Pen #5 - Calves - All year - Main - Manure Stream #0",
+          "bedding_name": "Pen #5 - Calves - All year - Main - Manure Stream #0 - Bedding config - CBPB sawdust",
+          "stream_proportion": 1,
+          "first_processor": "Pen #5 - Calves - All year - Main - Manure Stream #0 - Storage - Calf hutch"
+        }
+      ]
+    }
+  ],
+  "bedding_configs": [
+    {
+      "name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Main - Manure Stream #0 - Bedding config - none",
+      "bedding_type": "none",
+      "bedding_mass_per_day": 0,
+      "bedding_density": 0,
+      "bedding_dry_matter_content": 0,
+      "bedding_cleaned_fraction": 0,
+      "bedding_carbon_fraction": 0,
+      "bedding_phosphorus_content": 0,
+      "sand_removal_efficiency": 0
+    },
+    {
+      "name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Parlor - Manure Stream #0 - Bedding config - none",
+      "bedding_type": "none",
+      "bedding_mass_per_day": 0,
+      "bedding_density": 0,
+      "bedding_dry_matter_content": 0,
+      "bedding_cleaned_fraction": 0,
+      "bedding_carbon_fraction": 0,
+      "bedding_phosphorus_content": 0,
+      "sand_removal_efficiency": 0
+    },
+    {
+      "name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Main - Manure Stream #0 - Bedding config - sawdust",
+      "bedding_type": "sawdust",
+      "bedding_mass_per_day": 1.97,
+      "bedding_density": 250,
+      "bedding_dry_matter_content": 0.9,
+      "bedding_cleaned_fraction": 1,
+      "bedding_carbon_fraction": 0,
+      "bedding_phosphorus_content": 0,
+      "sand_removal_efficiency": 0
+    },
+    {
+      "name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Parlor - Manure Stream #0 - Bedding config - none",
+      "bedding_type": "none",
+      "bedding_mass_per_day": 0,
+      "bedding_density": 0,
+      "bedding_dry_matter_content": 0,
+      "bedding_cleaned_fraction": 0,
+      "bedding_carbon_fraction": 0,
+      "bedding_phosphorus_content": 0,
+      "sand_removal_efficiency": 0
+    },
+    {
+      "name": "Pen #3 - Dry cows - All year - Main - Manure Stream #0 - Bedding config - none",
+      "bedding_type": "none",
+      "bedding_mass_per_day": 0,
+      "bedding_density": 0,
+      "bedding_dry_matter_content": 0,
+      "bedding_cleaned_fraction": 0,
+      "bedding_carbon_fraction": 0,
+      "bedding_phosphorus_content": 0,
+      "sand_removal_efficiency": 0
+    },
+    {
+      "name": "Pen #4 - Heifers - All year - Main - Manure Stream #0 - Bedding config - none",
+      "bedding_type": "none",
+      "bedding_mass_per_day": 0,
+      "bedding_density": 0,
+      "bedding_dry_matter_content": 0,
+      "bedding_cleaned_fraction": 0,
+      "bedding_carbon_fraction": 0,
+      "bedding_phosphorus_content": 0,
+      "sand_removal_efficiency": 0
+    },
+    {
+      "name": "Pen #5 - Calves - All year - Main - Manure Stream #0 - Bedding config - CBPB sawdust",
+      "bedding_type": "CBPB sawdust",
+      "bedding_mass_per_day": 12,
+      "bedding_density": 350,
+      "bedding_dry_matter_content": 0.9,
+      "bedding_cleaned_fraction": 1,
+      "bedding_carbon_fraction": 0.35,
+      "bedding_phosphorus_content": 0,
+      "sand_removal_efficiency": 0
+    }
+  ]
+}
\ No newline at end of file
diff --git a/input/data/FarmES/config.json b/input/data/FarmES/config.json
new file mode 100644
index 0000000000..4c2fcb5235
--- /dev/null
+++ b/input/data/FarmES/config.json
@@ -0,0 +1,10 @@
+{
+  "start_date": "2020:217",
+  "end_date": "2025:216",
+  "random_seed": 42,
+  "set_seed": true,
+  "simulate_animals": true,
+  "nutrient_standard": "NASEM",
+  "FIPS_county_code": 4013,
+  "include_detailed_values": false
+}
\ No newline at end of file
diff --git a/input/data/FarmES/farm_es_field_0.json b/input/data/FarmES/farm_es_field_0.json
new file mode 100644
index 0000000000..1b7e7352eb
--- /dev/null
+++ b/input/data/FarmES/farm_es_field_0.json
@@ -0,0 +1,19 @@
+{
+  "soil_specification": "farm_es_field_0_soil",
+  "crop_specification": "farm_es_field_0_crops",
+  "fertilizer_management_specification": "farm_es_field_0_fertilizer_schedule",
+  "manure_management_specification": "farm_es_field_0_manure_schedule",
+  "tillage_management_specification": "farm_es_field_0_tillage_schedule",
+  "field_size": 0.4048582995951417,
+  "absolute_latitude": 33.23735,
+  "longitude": -112.58538,
+  "minimum_daylength": 9,
+  "seasonal_high_water_table": false,
+  "watering_amount_in_liters": 0,
+  "watering_interval": 0,
+  "supplement_manure_nutrient_deficiencies": false,
+  "simulate_water_stress": false,
+  "simulate_temp_stress": true,
+  "simulate_nitrogen_stress": false,
+  "simulate_phosphorus_stress": true
+}
\ No newline at end of file
diff --git a/input/data/FarmES/farm_es_field_0_crops.json b/input/data/FarmES/farm_es_field_0_crops.json
new file mode 100644
index 0000000000..0c11e623ed
--- /dev/null
+++ b/input/data/FarmES/farm_es_field_0_crops.json
@@ -0,0 +1,41 @@
+{
+  "crop_schedules": [
+    {
+      "crop_species": "alfalfa_baleage",
+      "harvest_days": [
+        216,
+        216,
+        216,
+        217,
+        216,
+        1
+      ],
+      "harvest_years": [
+        2021,
+        2022,
+        2023,
+        2024,
+        2025,
+        2026
+      ],
+      "harvest_operations": [
+        "harvest_only",
+        "harvest_only",
+        "harvest_only",
+        "harvest_only",
+        "harvest_only",
+        "harvest_kill"
+      ],
+      "harvest_type": "scheduled",
+      "planting_days": [
+        91
+      ],
+      "planting_years": [
+        2021
+      ],
+      "pattern_repeat": 0,
+      "planting_skip": 0,
+      "harvesting_skip": 0
+    }
+  ]
+}
\ No newline at end of file
diff --git a/input/data/FarmES/farm_es_field_0_fertilizer_schedule.json b/input/data/FarmES/farm_es_field_0_fertilizer_schedule.json
new file mode 100644
index 0000000000..96cb098a49
--- /dev/null
+++ b/input/data/FarmES/farm_es_field_0_fertilizer_schedule.json
@@ -0,0 +1,37 @@
+{
+  "available_fertilizer_mixes": [
+    {
+      "name": "Fertlizer01",
+      "N": 0.28,
+      "P": 0,
+      "K": 0,
+      "ammoniumFraction": 0.25
+    }
+  ],
+  "mix_names": [
+    "Fertlizer01"
+  ],
+  "years": [
+    2021
+  ],
+  "days": [
+    90
+  ],
+  "nitrogen_masses": [
+    50
+  ],
+  "phosphorus_masses": [
+    0
+  ],
+  "potassium_masses": [
+    0
+  ],
+  "application_depths": [
+    0
+  ],
+  "surface_remainder_fractions": [
+    1
+  ],
+  "pattern_repeat": 5,
+  "pattern_skip": 0
+}
\ No newline at end of file
diff --git a/input/data/FarmES/farm_es_field_0_manure_schedule.json b/input/data/FarmES/farm_es_field_0_manure_schedule.json
new file mode 100644
index 0000000000..93821f872a
--- /dev/null
+++ b/input/data/FarmES/farm_es_field_0_manure_schedule.json
@@ -0,0 +1,34 @@
+{
+  "years": [
+    2025
+  ],
+  "days": [
+    140
+  ],
+  "nitrogen_masses": [
+    0.09715948565400001
+  ],
+  "phosphorus_masses": [
+    0.037013137392
+  ],
+  "potassium_masses": [
+    0.09715948565400001
+  ],
+  "coverage_fractions": [
+    1
+  ],
+  "application_depths": [
+    152.39999999999998
+  ],
+  "manure_types": [
+    "liquid"
+  ],
+  "surface_remainder_fractions": [
+    0.05
+  ],
+  "supplement_manure_nutrient_deficiencies": [
+    "manure"
+  ],
+  "pattern_repeat": 0,
+  "pattern_skip": 0
+}
\ No newline at end of file
diff --git a/input/data/FarmES/farm_es_field_0_soil.json b/input/data/FarmES/farm_es_field_0_soil.json
new file mode 100644
index 0000000000..68f9c3a070
--- /dev/null
+++ b/input/data/FarmES/farm_es_field_0_soil.json
@@ -0,0 +1,56 @@
+{
+  "soil_layers": [
+    {
+      "bottom_depth": 100,
+      "wilting_point_water_concentration": 0.0230188679245283,
+      "field_capacity_water_concentration": 0.1230188679245283,
+      "saturation_point_water_concentration": 0.43735849056603776,
+      "saturated_hydraulic_conductivity": 100.8,
+      "bulk_density": 1.43,
+      "organic_carbon_fraction": 0.00436046511627907,
+      "clay_fraction": 0.125,
+      "silt_fraction": 0.196,
+      "sand_fraction": 0.679,
+      "rock_fraction": 0.45,
+      "soil_water_concentration": 0.0730188679245283,
+      "initial_temperature": 15,
+      "initial_labile_inorganic_phosphorus_concentration": null,
+      "initial_fresh_organic_phosphorus_concentration": null,
+      "initial_soil_nitrate_concentration": null,
+      "initial_soil_ammonium_concentration": null,
+      "ammonium_volatilization_cation_exchange_factor": 0.45
+    },
+    {
+      "bottom_depth": 1520,
+      "wilting_point_water_concentration": 0.027622641509433964,
+      "field_capacity_water_concentration": 0.13762264150943396,
+      "saturation_point_water_concentration": 0.4327547169811321,
+      "saturated_hydraulic_conductivity": 100.8,
+      "bulk_density": 1.43,
+      "organic_carbon_fraction": 0.0014534883720930235,
+      "clay_fraction": 0.15,
+      "silt_fraction": 0.19100000000000003,
+      "sand_fraction": 0.659,
+      "rock_fraction": 0.11,
+      "soil_water_concentration": 0.08262264150943396,
+      "initial_temperature": 15,
+      "initial_labile_inorganic_phosphorus_concentration": null,
+      "initial_fresh_organic_phosphorus_concentration": null,
+      "initial_soil_nitrate_concentration": null,
+      "initial_soil_ammonium_concentration": null,
+      "ammonium_volatilization_cation_exchange_factor": 0.45
+    }
+  ],
+  "second_moisture_condition_parameter": 85,
+  "average_subbasin_slope": 0.05,
+  "slope_length": 50,
+  "manning_roughness_coefficient": 0.4,
+  "support_practice_factor": 0.08,
+  "albedo": 0.23,
+  "soil_evaporation_compensation_coefficient": 0.95,
+  "initial_residue": 0,
+  "denitrification_rate_coefficient": 1.4,
+  "denitrification_threshold_water_content": 1,
+  "residue_fresh_organic_mineralization_rate": 0.05,
+  "humus_mineralization_rate_factor": 0.003
+}
\ No newline at end of file
diff --git a/input/data/FarmES/farm_es_field_0_tillage_schedule.json b/input/data/FarmES/farm_es_field_0_tillage_schedule.json
new file mode 100644
index 0000000000..16d82263c4
--- /dev/null
+++ b/input/data/FarmES/farm_es_field_0_tillage_schedule.json
@@ -0,0 +1,10 @@
+{
+  "years": [],
+  "days": [],
+  "tillage_depths": [],
+  "incorporation_fractions": [],
+  "mixing_fractions": [],
+  "implements": [],
+  "pattern_repeat": 0,
+  "pattern_skip": 0
+}
\ No newline at end of file
diff --git a/input/data/FarmES/farm_es_weather.csv b/input/data/FarmES/farm_es_weather.csv
new file mode 100644
index 0000000000..b40e9f6c32
--- /dev/null
+++ b/input/data/FarmES/farm_es_weather.csv
@@ -0,0 +1,1828 @@
+year,jday,high,low,avg,precip,Hday,irrigation
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+2025,181,45.7,29.7,38.2,0,28.31,0
+2025,182,44.8,30.3,38.3,0,27.39,0
+2025,183,39.9,30,34.9,0,23.89,0
+2025,184,35.8,24.9,31,1.8,24.43,0
+2025,185,37.9,24.1,31.3,0,26.51,0
+2025,186,39.8,26.1,33.4,0,28.34,0
+2025,187,42.9,27.3,36.1,0,28.26,0
+2025,188,42.9,30.2,36.8,0,26.72,0
+2025,189,43.4,29.6,37.1,0,27.3,0
+2025,190,46.6,31,39.4,0,27.87,0
+2025,191,44.3,32,38.3,0,28.03,0
+2025,192,42.3,29.1,35.6,0,27.85,0
+2025,193,41.7,27.5,35,0,28.14,0
+2025,194,42.2,28,35.5,0,27.68,0
+2025,195,42,27.9,35.2,0,28.02,0
+2025,196,39.8,28.4,34.5,0,24.28,0
+2025,197,36.4,26,31.8,0.8,21.21,0
+2025,198,34.4,23.8,29.2,1.3,23.75,0
+2025,199,38.6,25.7,32.5,0,25.93,0
+2025,200,40.8,25.9,33.8,0,26.27,0
+2025,201,37.1,27.9,33.1,0,17.9,0
+2025,202,40,27.2,33.6,0,22.55,0
+2025,203,38.7,27.6,33.1,0,24.51,0
+2025,204,39.6,25.2,32.8,0,28.68,0
+2025,205,40.8,23.8,33.7,0,28.7,0
+2025,206,41.5,24.8,34.4,0,28.02,0
+2025,207,40.8,24.7,33.7,0,28.67,0
+2025,208,43,25.6,35.3,0,28.12,0
+2025,209,42.9,27.1,35.8,0,28.06,0
+2025,210,42.1,28.4,35.8,0,27.73,0
+2025,211,42.6,28.3,35.9,0,27.77,0
+2025,212,42,28.6,35.9,0,25.52,0
+2025,213,43.9,28.7,37.1,0,27.07,0
+2025,214,44.4,28.7,37.3,0,28.13,0
+2025,215,44,26.6,36.2,0,28.4,0
+2025,216,43.4,26.7,36.1,0,27.44,0
\ No newline at end of file
diff --git a/input/data/FarmES/feed.json b/input/data/FarmES/feed.json
new file mode 100644
index 0000000000..2c1564f170
--- /dev/null
+++ b/input/data/FarmES/feed.json
@@ -0,0 +1,259 @@
+{
+  "calf_feeds": [
+    202,
+    216
+  ],
+  "growing_feeds": [
+    44,
+    51,
+    95,
+    108,
+    301,
+    305
+  ],
+  "lac_cow_feeds": [
+    89,
+    109
+  ],
+  "close_up_feeds": [
+    44,
+    51,
+    95,
+    100,
+    108,
+    301,
+    305
+  ],
+  "purchased_feeds": [
+    {
+      "purchased_feed": 202,
+      "purchased_feed_cost": 0.01,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 216,
+      "purchased_feed_cost": 1,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 44,
+      "purchased_feed_cost": 0.5,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 51,
+      "purchased_feed_cost": 0.01,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 95,
+      "purchased_feed_cost": 0.01,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 108,
+      "purchased_feed_cost": 0.01,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 301,
+      "purchased_feed_cost": 1,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 305,
+      "purchased_feed_cost": 0.1,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 89,
+      "purchased_feed_cost": 0.01,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 109,
+      "purchased_feed_cost": 0.01,
+      "buffer": 0.15
+    },
+    {
+      "purchased_feed": 100,
+      "purchased_feed_cost": 0.01,
+      "buffer": 0.15
+    }
+  ],
+  "farm_grown_feeds": [
+    109
+  ],
+  "storage_options": [
+    {
+      "storage_type": "Bunker Silo",
+      "moisture": "Direct Cut",
+      "additive": "preservative",
+      "packing_density": 200,
+      "inoculation": "heterofermentative",
+      "bunk_type": "open_floor",
+      "ventilation": true,
+      "removal_rate": 6,
+      "initial_dry_matter": 0
+    },
+    {
+      "storage_type": "Bunker Silo",
+      "moisture": "Direct Cut",
+      "additive": "preservative",
+      "packing_density": 200,
+      "inoculation": "heterofermentative",
+      "bunk_type": "open_floor",
+      "ventilation": true,
+      "removal_rate": 6,
+      "initial_dry_matter": 0
+    }
+  ],
+  "user_defined_ration_percentages": {
+    "calf": [
+      {
+        "feed_type": 202,
+        "ration_percentage": 50
+      },
+      {
+        "feed_type": 216,
+        "ration_percentage": 50
+      }
+    ],
+    "growing": [
+      {
+        "feed_type": 44,
+        "ration_percentage": 2.736318407960199
+      },
+      {
+        "feed_type": 51,
+        "ration_percentage": 17.226368159203982
+      },
+      {
+        "feed_type": 95,
+        "ration_percentage": 26.11940298507463
+      },
+      {
+        "feed_type": 108,
+        "ration_percentage": 31.343283582089555
+      },
+      {
+        "feed_type": 301,
+        "ration_percentage": 2.3631840796019903
+      },
+      {
+        "feed_type": 305,
+        "ration_percentage": 20.211442786069654
+      }
+    ],
+    "close_up": [
+      {
+        "feed_type": 44,
+        "ration_percentage": 2.7275947573503365
+      },
+      {
+        "feed_type": 51,
+        "ration_percentage": 20.545518951470065
+      },
+      {
+        "feed_type": 95,
+        "ration_percentage": 18.951470067304285
+      },
+      {
+        "feed_type": 100,
+        "ration_percentage": 18.986893375841305
+      },
+      {
+        "feed_type": 108,
+        "ration_percentage": 18.34927382217499
+      },
+      {
+        "feed_type": 301,
+        "ration_percentage": 1.9482819695359546
+      },
+      {
+        "feed_type": 305,
+        "ration_percentage": 18.49096705632306
+      }
+    ],
+    "lac_cow": [
+      {
+        "feed_type": 89,
+        "ration_percentage": 67.97777452843982
+      },
+      {
+        "feed_type": 109,
+        "ration_percentage": 32.02222547156017
+      }
+    ],
+    "tolerance": 0.1
+  },
+  "milk_reduction_maximum": 10,
+  "allowances": [
+    {
+      "purchased_feed": 202,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 216,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 44,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 51,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 95,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 108,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 301,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 305,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 89,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 109,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    },
+    {
+      "purchased_feed": 100,
+      "runtime_purchase_allowance": 1000,
+      "advance_purchase_allowance": 1000,
+      "planning_cycle_allowance": 1000
+    }
+  ]
+}
\ No newline at end of file
diff --git a/input/data/FarmES/feed_storage_configurations.json b/input/data/FarmES/feed_storage_configurations.json
new file mode 100644
index 0000000000..86ed8fc182
--- /dev/null
+++ b/input/data/FarmES/feed_storage_configurations.json
@@ -0,0 +1,27 @@
+{
+  "grain_storage": [{
+      "name": "corn_grain_storage_1",
+      "crop_name": "corn_grain",
+      "field_names": ["field_2"],
+      "storage_type": "Dry",
+      "dm_loss_coefficient": 0.1,
+      "initial_storage_dry_matter": 0.86,
+      "rufas_id": 44,
+      "capacity": 1e10
+    }],
+  "silage_storage": [],
+  "baleage_storage": [
+    {
+      "name": "alfalfa_baleage_farm_es_field_0_storage",
+      "crop_name": "alfalfa_baleage",
+      "field_names": ["farm_es_field_0"],
+      "initial_storage_dry_matter": 0.91,
+      "rufas_id": 109,
+      "storage_type": "Baleage",
+      "post_wilting_moisture_percentage": 45,
+      "capacity": 10000000000,
+      "bale_density": 200
+    }
+  ],
+  "hay_storage": []
+}
\ No newline at end of file
diff --git a/input/data/FarmES/feed_storage_instances.json b/input/data/FarmES/feed_storage_instances.json
new file mode 100644
index 0000000000..e438a7e5eb
--- /dev/null
+++ b/input/data/FarmES/feed_storage_instances.json
@@ -0,0 +1,5 @@
+{
+  "feed_storages": [
+    "alfalfa_baleage_farm_es_field_0_storage"
+  ]
+}
\ No newline at end of file
diff --git a/input/data/FarmES/manure_processor_configs.json b/input/data/FarmES/manure_processor_configs.json
new file mode 100644
index 0000000000..8ee9d06b37
--- /dev/null
+++ b/input/data/FarmES/manure_processor_configs.json
@@ -0,0 +1,57 @@
+{
+  "anaerobic_digester": [],
+  "handler": [
+    {
+      "name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Parlor - Manure Stream #0 - Manure Handler - Parlor cleaning handler",
+      "processor_type": "ParlorCleaningHandler",
+      "cleaning_water_use_amount": 189,
+      "cleaning_water_recycle_fraction": 0.8,
+      "use_parlor_flush": true
+    },
+    {
+      "name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Main - Manure Stream #0 - Manure Handler - Manual scraper",
+      "processor_type": "ManualScraper",
+      "cleaning_water_use_amount": 0
+    },
+    {
+      "name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Parlor - Manure Stream #0 - Manure Handler - Parlor cleaning handler",
+      "processor_type": "ParlorCleaningHandler",
+      "cleaning_water_use_amount": 189,
+      "cleaning_water_recycle_fraction": 0.8,
+      "use_parlor_flush": false
+    }
+  ],
+  "separator": [],
+  "storage": [
+    {
+      "processor_type": "DailySpread",
+      "name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Main - Manure Stream #0 - Storage - Pasture"
+    },
+    {
+      "processor_type": "DailySpread",
+      "name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Parlor - Manure Stream #0 - Storage - Pasture"
+    },
+    {
+      "name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Main - Manure Stream #0 - Storage - All effluents - Daily spread",
+      "processor_type": "DailySpread"
+    },
+    {
+      "name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Parlor - Manure Stream #0 - Storage - All effluents - Daily spread",
+      "processor_type": "DailySpread"
+    },
+    {
+      "processor_type": "DailySpread",
+      "name": "Pen #3 - Dry cows - All year - Main - Manure Stream #0 - Storage - Pasture"
+    },
+    {
+      "processor_type": "DailySpread",
+      "name": "Pen #4 - Heifers - All year - Main - Manure Stream #0 - Storage - Pasture"
+    },
+    {
+      "processor_type": "BeddedPack",
+      "name": "Pen #5 - Calves - All year - Main - Manure Stream #0 - Storage - Calf hutch",
+      "storage_time_period": 60,
+      "is_mixed": false
+    }
+  ]
+}
\ No newline at end of file
diff --git a/input/data/FarmES/processor_connections.json b/input/data/FarmES/processor_connections.json
new file mode 100644
index 0000000000..2b27339acd
--- /dev/null
+++ b/input/data/FarmES/processor_connections.json
@@ -0,0 +1,60 @@
+{
+  "processor_connections": [
+    {
+      "processor_name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Parlor - Manure Stream #0 - Manure Handler - Parlor cleaning handler",
+      "destinations": [
+        {
+          "receiving_processor_name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Parlor - Manure Stream #0 - Storage - Pasture",
+          "proportion": 1
+        }
+      ]
+    },
+    {
+      "processor_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Main - Manure Stream #0 - Manure Handler - Manual scraper",
+      "destinations": [
+        {
+          "receiving_processor_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Main - Manure Stream #0 - Storage - All effluents - Daily spread",
+          "proportion": 1
+        }
+      ]
+    },
+    {
+      "processor_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Parlor - Manure Stream #0 - Manure Handler - Parlor cleaning handler",
+      "destinations": [
+        {
+          "receiving_processor_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Parlor - Manure Stream #0 - Storage - All effluents - Daily spread",
+          "proportion": 1
+        }
+      ]
+    },
+    {
+      "processor_name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Main - Manure Stream #0 - Storage - Pasture",
+      "destinations": []
+    },
+    {
+      "processor_name": "Pen #1 - Lactating cows - Part of the year (4928 hours) - Parlor - Manure Stream #0 - Storage - Pasture",
+      "destinations": []
+    },
+    {
+      "processor_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Main - Manure Stream #0 - Storage - All effluents - Daily spread",
+      "destinations": []
+    },
+    {
+      "processor_name": "Pen #2 - Lactating cows - Remainder of the year (3832 hours) - Parlor - Manure Stream #0 - Storage - All effluents - Daily spread",
+      "destinations": []
+    },
+    {
+      "processor_name": "Pen #3 - Dry cows - All year - Main - Manure Stream #0 - Storage - Pasture",
+      "destinations": []
+    },
+    {
+      "processor_name": "Pen #4 - Heifers - All year - Main - Manure Stream #0 - Storage - Pasture",
+      "destinations": []
+    },
+    {
+      "processor_name": "Pen #5 - Calves - All year - Main - Manure Stream #0 - Storage - Calf hutch",
+      "destinations": []
+    }
+  ],
+  "separator_connections": []
+}
\ No newline at end of file
diff --git a/input/data/tasks/evaluation_farm_task.json b/input/data/tasks/evaluation_farm_task.json
new file mode 100644
index 0000000000..73aea6325f
--- /dev/null
+++ b/input/data/tasks/evaluation_farm_task.json
@@ -0,0 +1,13 @@
+{
+  "parallel_workers": 4,
+  "tasks": [
+    {
+      "task_type": "SIMULATION_SINGLE_RUN",
+      "metadata_file_path": "input/metadata/farm7_wcrops_metadata.json",
+      "input_root": "C:/Users/Kristan Reed/RuFaSEval/RuFaS-Evaluation/",
+      "output_prefix": "farm7",
+      "log_verbosity": "errors"
+
+    }
+]
+}
diff --git a/input/data/tasks/example_test_task.json b/input/data/tasks/example_test_task.json
new file mode 100644
index 0000000000..f7d9910a19
--- /dev/null
+++ b/input/data/tasks/example_test_task.json
@@ -0,0 +1,15 @@
+{
+  "parallel_workers": 2,
+  "tasks": [
+  
+    {
+      "task_type": "SIMULATION_MULTI_RUN",
+      "metadata_file_path": "input/metadata/farm7_wcrops_metadata.json",
+      "input_root": "C:/Users/Kristan Reed/RuFaSEval/RuFaS-Evaluation/",
+      "output_prefix": "farm7",
+      "log_verbosity": "errors",
+       "multi_run_counts": 4
+
+    }
+]
+}
diff --git a/input/data/tasks/farm_es_test.json b/input/data/tasks/farm_es_test.json
new file mode 100644
index 0000000000..49e9a20792
--- /dev/null
+++ b/input/data/tasks/farm_es_test.json
@@ -0,0 +1,12 @@
+{
+  "parallel_workers": 4,
+  "tasks": [
+    {
+      "task_type": "SIMULATION_SINGLE_RUN",
+      "metadata_file_path": "input/metadata/farmes_metadata.json",
+      "output_prefix": "farm-es",
+      "log_verbosity": "errors",
+      "random_seed": 42
+    }
+]
+}
diff --git a/input/metadata/farmes_metadata copy.json b/input/metadata/farmes_metadata copy.json
new file mode 100644
index 0000000000..5ac6a36814
--- /dev/null
+++ b/input/metadata/farmes_metadata copy.json	
@@ -0,0 +1,360 @@
+{
+  "files": {
+    "config": {
+      "title": "Config Data",
+      "description": "Configuration file for general simulation parameters.",
+      "path": "input/data/FarmES/config.json",
+      "type": "json",
+      "properties": "config_properties"
+    },
+    "animal": {
+      "title": "Animal data",
+      "description": "Input data and configuration information for animal management decisions, herd attributes, and housing properties.",
+      "path": "input/data/FarmES/animal.json",
+      "type": "json",
+      "properties": "animal_properties"
+    },
+    "animal_population": {
+      "title": "Animal population data",
+      "description": "Animal objects that herd initialization draws from during the simulation. A similar file can be generated using the -I and -s command line arguments simultaneously.",
+      "path": "input/data/animal/animal_population.json",
+      "type": "json",
+      "properties": "animal_population_properties"
+    },
+    "animal_net_merit": {
+      "title": "Animal Net Merit data",
+      "description": "The net merit value for cows.",
+      "path": "input/data/animal/animal_genetics/NetMerit_HO.csv",
+      "type": "csv",
+      "properties": "animal_net_merit_properties"
+    },
+    "animal_top_listing_semen": {
+      "title": "Animal Top Listing Semen data",
+      "description": "The top listing semen value for new born calves.",
+      "path": "input/data/animal/animal_genetics/TopListingSemen_HO.csv",
+      "type": "csv",
+      "properties": "animal_top_listing_semen_properties"
+    },
+    "lactation": {
+      "title": "Lactation curve adjustment values",
+      "description": "Values for the adjustment of the three wood parameters based on farm specific data",
+      "path": "input/data/animal/lactation_curve_adjustment_inputs.json",
+      "type": "json",
+      "properties": "lactation_properties"
+    },
+    "economy": {
+      "title": "Economy data",
+      "description": "Energy prices used in the EEE module.",
+      "path": "input/data/EEE/default_costs.csv",
+      "type": "csv",
+      "properties": "economic_properties"
+    },
+    "emission": {
+      "title": "Emissions data",
+      "description": "General emission values used in the EEE module.",
+      "path": "input/data/EEE/default_emissions.csv",
+      "type": "csv",
+      "properties": "emissions_properties"
+    },
+    "purchased_feeds_emissions": {
+      "title": "Emissions from purchased feeds",
+      "description": "Purchased feeds emission values used in the EEE module. Missing data interpolated following script in helpful_scripts/emissions_interpolation.",
+      "path": "input/data/EEE/full_feeds_emissions_July2024_interpolated_regional_average.csv",
+      "type": "csv",
+      "properties": "feed_emissions_properties"
+    },
+    "purchased_feed_land_use_change_emissions": {
+      "title": "Land Use Change emissions from purchased feeds",
+      "description": "Purchased feeds land use change emission values used in the EEE module. Missing data interpolated following script in helpful_scripts/emissions_interpolation.",
+      "path": "input/data/EEE/full_feeds_land_use_change_emissions_July2024_interpolated_regional_average.csv",
+      "type": "csv",
+      "properties": "feed_emissions_properties"
+    },
+    "feed": {
+      "title": "Feed data",
+      "description": "Feeds available for each animal combination, purchased feeds and their prices, feed storage options, and user-defined ration percentages and associated parameters.",
+      "path": "input/data/FarmES/feed.json",
+      "type": "json",
+      "properties": "feed_properties"
+    },
+    "NRC_Comp": {
+      "title": "NRC Comp data",
+      "description": "Nutritional information for each feed, following NRC (2001) guidelines.",
+      "path": "input/data/feed/NRC_comp.csv",
+      "type": "csv",
+      "properties": "NRC_Comp_properties"
+    },
+    "NASEM_Comp": {
+      "title": "NASEM Comp data",
+      "description": "Nutritional information for each feed, following NASEM (2021) guidelines.",
+      "path": "input/data/feed/NASEM_Comp_with_TDN_urea.csv",
+      "type": "csv",
+      "properties": "NASEM_Comp_properties"
+    },
+    "manure_management": {
+      "title": "Manure Processor Configurations",
+      "description": "Configurations of manure processors (handlers, separators, digesters, and storages) used in Manure module.",
+      "path": "input/data/FarmES/manure_processor_configs.json",
+      "type": "json",
+      "properties": "manure_management_properties"
+    },
+    "manure_processor_connection": {
+      "title": "Manure Processor Connections",
+      "description": "The connection configs for all manure processors.",
+      "path": "input/data/FarmES/processor_connections.json",
+      "type": "json",
+      "properties": "manure_processor_connection_properties"
+    },
+    "crop_configurations": {
+      "title": "Crop Configurations",
+      "description": "Configurations for how crops grow and are managed.",
+      "path": "input/data/crop_configurations/default_crop_configs.json",
+      "type": "json",
+      "properties": "crop_configuration_properties"
+    },
+    "farm_es_field_0": {
+      "title": "Field specification",
+      "description": "Field characteristics and references to field management specifications.",
+      "path": "input/data/FarmES/farm_es_field_0.json",
+      "type": "json",
+      "properties": "field_properties"
+    }, 
+    "farm_es_field_0_soil": {
+      "title": "Soil data",
+      "description": "Characteristic soil information, including composition, slope, and layer details.",
+      "path": "input/data/FarmES/farm_es_field_0_soil.json",
+      "type": "json",
+      "properties": "soil_profile_properties"
+    },
+   "farm_es_field_0_crops": {
+      "title": "Crop data",
+      "description": "Crop selection and detailed rotation schedules.",
+      "path": "input/data/FarmES/farm_es_field_0_crops.json",
+      "type": "json",
+      "properties": "crop_schedule_properties"
+    },
+    "farm_es_field_0_fertilizer_schedule": {
+      "title": "Fertilizer schedule.",
+      "description": "Fertilizer types available, and their application schedule.",
+      "path": "input/data/FarmES/farm_es_field_0_fertilizer_schedule.json",
+      "type": "json",
+      "properties": "fertilizer_schedule_properties"
+    },
+    "farm_es_field_0_manure_schedule": {
+      "title": "Manure schedule.",
+      "description": "Specifies manure applications to a field.",
+      "path": "input/data/FarmES/farm_es_field_0_manure_schedule.json",
+      "type": "json",
+      "properties": "manure_schedule_properties"
+    },
+    "farm_es_field_0_tillage_schedule": {
+      "title": "Tillage schedule.",
+      "description": "Schedule of tillage applications for a field.",
+      "path": "input/data/FarmES/farm_es_field_0_tillage_schedule.json",
+      "type": "json",
+      "properties": "tillage_schedule_properties"
+    },
+    "weather": {
+      "title": "Weather data",
+      "description": "Weather data used during the simulation, including date, precipitation, temperature, etc.",
+      "path": "input/data/FarmES/farm_es_weather.csv",
+      "type": "csv",
+      "properties": "weather_properties"
+    },
+    "user_feeds": {
+      "title": "User Feed",
+      "description": "Summary of feeds available for use in the simulation, including their RuFaS ID, short descriptors, and which nutrient composition file they are included in.",
+      "path": "input/data/feed/user_feeds.csv",
+      "type": "csv",
+      "properties": "user_feeds_properties"
+    },
+    "tractor_dataset": {
+      "title": "Tractor Dataset",
+      "description": "Details agricultural machinery operations for various crops, including tractor size, operations (planting, mowing, collection, etc.), implement details, operational parameters (depth, width, mass), and throughput metrics, spanning different crop types and soil management practices.",
+      "path": "input/data/EEE/tractor_dataset.csv",
+      "type": "csv",
+      "properties": "tractor_dataset_properties"
+    },
+    "EEE_constants": {
+      "title": "EEE Constants",
+      "description": "The constants that are used in EEE module.",
+      "path": "input/data/EEE/constants.json",
+      "type": "json",
+      "properties": "EEE_constants_properties"
+    },
+    "properties": {
+      "title": "Metadata Properties",
+      "description": "The properties of input data.",
+      "path": "input/metadata/properties/default.json",
+      "type": "json",
+      "properties": "NA"
+    },
+    "feed_storage_configurations": {
+      "title": "Feed Management",
+      "description": "Configurations for feed storage units.",
+      "path": "input/data/FarmES/feed_storage_configurations.json",
+      "type": "json",
+      "properties": "feed_storage_configurations"
+    },
+    "feed_storage_instances": {
+      "title": "Feed Storages",
+      "description": "Names of feed storage configs used in the simulation.",
+      "path": "input/data/FarmES/feed_storage_instances.json",
+      "type": "json",
+      "properties": "feed_storage_instances"
+    }, "field_2": {
+      "title": "Field specification",
+      "description": "Field characteristics and references to field management specifications.",
+      "path": "input/data/field/example_small_field_corn_grain_alf_hay.json",
+      "type": "json",
+      "properties": "field_properties"
+    },
+    "soil_2": {
+      "title": "Soil data",
+      "description": "Characteristic soil information, including composition, slope, and layer details.",
+      "path": "input/data/soil/example_soil_2.json",
+      "type": "json",
+      "properties": "soil_profile_properties"
+    },
+    "CornGrain-AlfHay": {
+      "title": "Crop data",
+      "description": "Crop selection and detailed rotation schedules.",
+      "path": "input/data/crop/corn_rotation.json",
+      "type": "json",
+      "properties": "crop_schedule_properties"
+    },
+    "fertilizer_schedule_2": {
+      "title": "Fertilizer schedule.",
+      "description": "Fertilizer types available, and their application schedule.",
+      "path": "input/data/fertilizer_schedule/example_sm_alf_corn_fertilizer.json",
+      "type": "json",
+      "properties": "fertilizer_schedule_properties"
+    },
+    "manure_schedule_2": {
+      "title": "Manure schedule.",
+      "description": "Specifies manure applications to a field.",
+      "path": "input/data/manure_schedule/example_sm_corn_alf_manure_schedule.json",
+      "type": "json",
+      "properties": "manure_schedule_properties"
+    },
+    "tillage_schedule_2": {
+      "title": "Tillage schedule.",
+      "description": "Schedule of tillage applications for a field.",
+      "path": "input/data/tillage_schedule/no_till.json",
+      "type": "json",
+      "properties": "tillage_schedule_properties"
+    }
+  },
+  "cross-validation": [
+    {
+  "description": "Number of stalls in calf pen",
+  "target_and_save": {
+    "variables": {
+      "number_of_calves": "animal.herd_information.calf_num",
+      "pen_animal_type": "animal.pen_information.0.animal_combination",
+      "pen_stall_num": "animal.pen_information.0.number_of_stalls",
+      "pen_stocking_density": "animal.pen_information.0.max_stocking_density"
+    },
+    "constants": {
+      "calf_pen_type": "CALF"
+    }
+  },
+    "apply_when": [
+    {
+      "left_hand": {
+        "operation": "no_op",
+        "apply_to": "group",
+        "ordered_variables": ["pen_animal_type"]
+      },
+      "right_hand": {
+        "operation": "no_op",
+        "apply_to": "individual",
+        "ordered_variables": ["calf_pen_type"]
+      },
+      "relationship": "equal"
+    }
+  ],
+  "rules": [
+    {
+      "left_hand": {
+        "operation": "sum",
+        "apply_to": "group",
+        "ordered_variables": ["pen_stall_num"]
+      },
+      "right_hand": {
+        "operation": "division",
+        "apply_to": "individual",
+        "ordered_variables": ["number_of_calves", "pen_stocking_density"],
+        "save_as": "min_num_stalls"
+      },
+      "relationship": "greater_or_equal_to"
+    }
+  ]
+},
+{
+  "description": "Number of stalls in growing pens",
+  "target_and_save": {
+    "variables": {
+      "number_of_heifer1s": "animal.herd_information.heiferI_num",
+      "number_of_heifer2s": "animal.herd_information.heiferII_num",
+      "pen_animal_type": "animal.pen_information.1.animal_combination",
+      "pen_stall_num": "animal.pen_information.1.number_of_stalls",
+      "pen_stocking_density": "animal.pen_information.1.max_stocking_density"
+   },
+    "constants": {
+      "growing_pen_type": "GROWING"
+    }
+  },
+  "apply_when": [
+    {
+      "left_hand": {
+        "operation": "no_op",
+        "apply_to": "group",
+        "ordered_variables": ["pen_animal_type"]
+      },
+      "right_hand": {
+        "operation": "no_op",
+        "apply_to": "individual",
+        "ordered_variables": ["growing_pen_type"]
+      },
+      "relationship": "equal"
+    }
+  ],
+  "rules": [
+    {
+      "left_hand": {
+        "operation": "sum",
+        "apply_to": "group",
+        "ordered_variables": ["pen_stall_num"]
+      },
+      "right_hand": {
+        "operation": "division",
+        "apply_to": "individual",
+        "ordered_variables": ["number_of_heifer1s", "pen_stocking_density"],
+        "save_as": "min_num_stalls"         
+      },
+      "relationship": "greater_or_equal_to"
+    },
+    {
+      "left_hand": {
+        "operation": "sum",
+        "apply_to": "group",
+        "ordered_variables": ["pen_stall_num"]
+      },
+      "right_hand": {
+        "operation": "division",
+        "apply_to": "individual",
+        "ordered_variables": ["number_of_heifer2s", "pen_stocking_density"],
+        "save_as": "max_num_stalls"         
+      },
+      "relationship": "greater_or_equal_to"
+    }
+  ]
+}
+  ],
+  "runtime_metadata": {
+    "EEE_econ": {
+      "path": "input/metadata/EEE/econ_metadata.json"
+    }
+  }
+}
\ No newline at end of file
diff --git a/input/metadata/farmes_metadata.json b/input/metadata/farmes_metadata.json
new file mode 100644
index 0000000000..28c1debddf
--- /dev/null
+++ b/input/metadata/farmes_metadata.json
@@ -0,0 +1,319 @@
+{
+  "files": {
+    "config": {
+      "title": "Config Data",
+      "description": "Configuration file for general simulation parameters.",
+      "path": "input/data/FarmES/config.json",
+      "type": "json",
+      "properties": "config_properties"
+    },
+    "animal": {
+      "title": "Animal data",
+      "description": "Input data and configuration information for animal management decisions, herd attributes, and housing properties.",
+      "path": "input/data/FarmES/animal.json",
+      "type": "json",
+      "properties": "animal_properties"
+    },
+    "animal_population": {
+      "title": "Animal population data",
+      "description": "Animal objects that herd initialization draws from during the simulation. A similar file can be generated using the -I and -s command line arguments simultaneously.",
+      "path": "input/data/animal/animal_population.json",
+      "type": "json",
+      "properties": "animal_population_properties"
+    },
+    "animal_net_merit": {
+      "title": "Animal Net Merit data",
+      "description": "The net merit value for cows.",
+      "path": "input/data/animal/animal_genetics/NetMerit_HO.csv",
+      "type": "csv",
+      "properties": "animal_net_merit_properties"
+    },
+    "animal_top_listing_semen": {
+      "title": "Animal Top Listing Semen data",
+      "description": "The top listing semen value for new born calves.",
+      "path": "input/data/animal/animal_genetics/TopListingSemen_HO.csv",
+      "type": "csv",
+      "properties": "animal_top_listing_semen_properties"
+    },
+    "lactation": {
+      "title": "Lactation curve adjustment values",
+      "description": "Values for the adjustment of the three wood parameters based on farm specific data",
+      "path": "input/data/animal/lactation_curve_adjustment_inputs.json",
+      "type": "json",
+      "properties": "lactation_properties"
+    },
+    "economy": {
+      "title": "Economy data",
+      "description": "Energy prices used in the EEE module.",
+      "path": "input/data/EEE/default_costs.csv",
+      "type": "csv",
+      "properties": "economic_properties"
+    },
+    "emission": {
+      "title": "Emissions data",
+      "description": "General emission values used in the EEE module.",
+      "path": "input/data/EEE/default_emissions.csv",
+      "type": "csv",
+      "properties": "emissions_properties"
+    },
+    "purchased_feeds_emissions": {
+      "title": "Emissions from purchased feeds",
+      "description": "Purchased feeds emission values used in the EEE module. Missing data interpolated following script in helpful_scripts/emissions_interpolation.",
+      "path": "input/data/EEE/full_feeds_emissions_July2024_interpolated_regional_average.csv",
+      "type": "csv",
+      "properties": "feed_emissions_properties"
+    },
+    "purchased_feed_land_use_change_emissions": {
+      "title": "Land Use Change emissions from purchased feeds",
+      "description": "Purchased feeds land use change emission values used in the EEE module. Missing data interpolated following script in helpful_scripts/emissions_interpolation.",
+      "path": "input/data/EEE/full_feeds_land_use_change_emissions_July2024_interpolated_regional_average.csv",
+      "type": "csv",
+      "properties": "feed_emissions_properties"
+    },
+    "feed": {
+      "title": "Feed data",
+      "description": "Feeds available for each animal combination, purchased feeds and their prices, feed storage options, and user-defined ration percentages and associated parameters.",
+      "path": "input/data/FarmES/feed.json",
+      "type": "json",
+      "properties": "feed_properties"
+    },
+    "NRC_Comp": {
+      "title": "NRC Comp data",
+      "description": "Nutritional information for each feed, following NRC (2001) guidelines.",
+      "path": "input/data/feed/NRC_comp.csv",
+      "type": "csv",
+      "properties": "NRC_Comp_properties"
+    },
+    "NASEM_Comp": {
+      "title": "NASEM Comp data",
+      "description": "Nutritional information for each feed, following NASEM (2021) guidelines.",
+      "path": "input/data/feed/NASEM_Comp_with_TDN_urea.csv",
+      "type": "csv",
+      "properties": "NASEM_Comp_properties"
+    },
+    "manure_management": {
+      "title": "Manure Processor Configurations",
+      "description": "Configurations of manure processors (handlers, separators, digesters, and storages) used in Manure module.",
+      "path": "input/data/FarmES/manure_processor_configs.json",
+      "type": "json",
+      "properties": "manure_management_properties"
+    },
+    "manure_processor_connection": {
+      "title": "Manure Processor Connections",
+      "description": "The connection configs for all manure processors.",
+      "path": "input/data/FarmES/processor_connections.json",
+      "type": "json",
+      "properties": "manure_processor_connection_properties"
+    },
+    "crop_configurations": {
+      "title": "Crop Configurations",
+      "description": "Configurations for how crops grow and are managed.",
+      "path": "input/data/crop_configurations/default_crop_configs.json",
+      "type": "json",
+      "properties": "crop_configuration_properties"
+    },
+    "farm_es_field_0": {
+      "title": "Field specification",
+      "description": "Field characteristics and references to field management specifications.",
+      "path": "input/data/FarmES/farm_es_field_0.json",
+      "type": "json",
+      "properties": "field_properties"
+    }, 
+    "farm_es_field_0_soil": {
+      "title": "Soil data",
+      "description": "Characteristic soil information, including composition, slope, and layer details.",
+      "path": "input/data/FarmES/farm_es_field_0_soil.json",
+      "type": "json",
+      "properties": "soil_profile_properties"
+    },
+   "farm_es_field_0_crops": {
+      "title": "Crop data",
+      "description": "Crop selection and detailed rotation schedules.",
+      "path": "input/data/FarmES/farm_es_field_0_crops.json",
+      "type": "json",
+      "properties": "crop_schedule_properties"
+    },
+    "farm_es_field_0_fertilizer_schedule": {
+      "title": "Fertilizer schedule.",
+      "description": "Fertilizer types available, and their application schedule.",
+      "path": "input/data/FarmES/farm_es_field_0_fertilizer_schedule.json",
+      "type": "json",
+      "properties": "fertilizer_schedule_properties"
+    },
+    "farm_es_field_0_manure_schedule": {
+      "title": "Manure schedule.",
+      "description": "Specifies manure applications to a field.",
+      "path": "input/data/FarmES/farm_es_field_0_manure_schedule.json",
+      "type": "json",
+      "properties": "manure_schedule_properties"
+    },
+    "farm_es_field_0_tillage_schedule": {
+      "title": "Tillage schedule.",
+      "description": "Schedule of tillage applications for a field.",
+      "path": "input/data/FarmES/farm_es_field_0_tillage_schedule.json",
+      "type": "json",
+      "properties": "tillage_schedule_properties"
+    },
+    "weather": {
+      "title": "Weather data",
+      "description": "Weather data used during the simulation, including date, precipitation, temperature, etc.",
+      "path": "input/data/FarmES/farm_es_weather.csv",
+      "type": "csv",
+      "properties": "weather_properties"
+    },
+    "user_feeds": {
+      "title": "User Feed",
+      "description": "Summary of feeds available for use in the simulation, including their RuFaS ID, short descriptors, and which nutrient composition file they are included in.",
+      "path": "input/data/feed/user_feeds.csv",
+      "type": "csv",
+      "properties": "user_feeds_properties"
+    },
+    "tractor_dataset": {
+      "title": "Tractor Dataset",
+      "description": "Details agricultural machinery operations for various crops, including tractor size, operations (planting, mowing, collection, etc.), implement details, operational parameters (depth, width, mass), and throughput metrics, spanning different crop types and soil management practices.",
+      "path": "input/data/EEE/tractor_dataset.csv",
+      "type": "csv",
+      "properties": "tractor_dataset_properties"
+    },
+    "EEE_constants": {
+      "title": "EEE Constants",
+      "description": "The constants that are used in EEE module.",
+      "path": "input/data/EEE/constants.json",
+      "type": "json",
+      "properties": "EEE_constants_properties"
+    },
+    "properties": {
+      "title": "Metadata Properties",
+      "description": "The properties of input data.",
+      "path": "input/metadata/properties/default.json",
+      "type": "json",
+      "properties": "NA"
+    },
+    "feed_storage_configurations": {
+      "title": "Feed Management",
+      "description": "Configurations for feed storage units.",
+      "path": "input/data/FarmES/feed_storage_configurations.json",
+      "type": "json",
+      "properties": "feed_storage_configurations"
+    },
+    "feed_storage_instances": {
+      "title": "Feed Storages",
+      "description": "Names of feed storage configs used in the simulation.",
+      "path": "input/data/FarmES/feed_storage_instances.json",
+      "type": "json",
+      "properties": "feed_storage_instances"
+    }
+  },
+  "cross-validation": [
+    {
+  "description": "Number of stalls in calf pen",
+  "target_and_save": {
+    "variables": {
+      "number_of_calves": "animal.herd_information.calf_num",
+      "pen_animal_type": "animal.pen_information.0.animal_combination",
+      "pen_stall_num": "animal.pen_information.0.number_of_stalls",
+      "pen_stocking_density": "animal.pen_information.0.max_stocking_density"
+    },
+    "constants": {
+      "calf_pen_type": "CALF"
+    }
+  },
+    "apply_when": [
+    {
+      "left_hand": {
+        "operation": "no_op",
+        "apply_to": "group",
+        "ordered_variables": ["pen_animal_type"]
+      },
+      "right_hand": {
+        "operation": "no_op",
+        "apply_to": "individual",
+        "ordered_variables": ["calf_pen_type"]
+      },
+      "relationship": "equal"
+    }
+  ],
+  "rules": [
+    {
+      "left_hand": {
+        "operation": "sum",
+        "apply_to": "group",
+        "ordered_variables": ["pen_stall_num"]
+      },
+      "right_hand": {
+        "operation": "division",
+        "apply_to": "individual",
+        "ordered_variables": ["number_of_calves", "pen_stocking_density"],
+        "save_as": "min_num_stalls"
+      },
+      "relationship": "greater_or_equal_to"
+    }
+  ]
+},
+{
+  "description": "Number of stalls in growing pens",
+  "target_and_save": {
+    "variables": {
+      "number_of_heifer1s": "animal.herd_information.heiferI_num",
+      "number_of_heifer2s": "animal.herd_information.heiferII_num",
+      "pen_animal_type": "animal.pen_information.1.animal_combination",
+      "pen_stall_num": "animal.pen_information.1.number_of_stalls",
+      "pen_stocking_density": "animal.pen_information.1.max_stocking_density"
+   },
+    "constants": {
+      "growing_pen_type": "GROWING"
+    }
+  },
+  "apply_when": [
+    {
+      "left_hand": {
+        "operation": "no_op",
+        "apply_to": "group",
+        "ordered_variables": ["pen_animal_type"]
+      },
+      "right_hand": {
+        "operation": "no_op",
+        "apply_to": "individual",
+        "ordered_variables": ["growing_pen_type"]
+      },
+      "relationship": "equal"
+    }
+  ],
+  "rules": [
+    {
+      "left_hand": {
+        "operation": "sum",
+        "apply_to": "group",
+        "ordered_variables": ["pen_stall_num"]
+      },
+      "right_hand": {
+        "operation": "division",
+        "apply_to": "individual",
+        "ordered_variables": ["number_of_heifer1s", "pen_stocking_density"],
+        "save_as": "min_num_stalls"         
+      },
+      "relationship": "greater_or_equal_to"
+    },
+    {
+      "left_hand": {
+        "operation": "sum",
+        "apply_to": "group",
+        "ordered_variables": ["pen_stall_num"]
+      },
+      "right_hand": {
+        "operation": "division",
+        "apply_to": "individual",
+        "ordered_variables": ["number_of_heifer2s", "pen_stocking_density"],
+        "save_as": "max_num_stalls"         
+      },
+      "relationship": "greater_or_equal_to"
+    }
+  ]
+}
+  ],
+  "runtime_metadata": {
+    "EEE_econ": {
+      "path": "input/metadata/EEE/econ_metadata.json"
+    }
+  }
+}
\ No newline at end of file
diff --git a/input/task_manager_metadata.json b/input/task_manager_metadata.json
index ec954a0086..3d0f895a45 100644
--- a/input/task_manager_metadata.json
+++ b/input/task_manager_metadata.json
@@ -3,7 +3,7 @@
     "tasks": {
       "title": "Task manager data",
       "description": "Configuration file for general simulation parameters.",
-      "path": "input/data/tasks/example_freestall_task.json",
+      "path": "input/data/tasks/example_test_task.json",
       "type": "json",
       "properties": "tasks_properties"
     },