how to get 3D Green’s functions from SPECFEM3D/3D_GLOBE

[mjy-888]

I want to use MTUQ ,but i can't find where to get 3D Green's functions form SPECFEM3D/3D_GLOBE, doc is in https://mtuqorg.github.io/mtuq/user_guide/03.html,Thanks!

[ammcpherson]

Hi @mjy-888,

I have created a basic tutorial on how to get 3D Green's functions from SPECFEM3D_GLOBE here. If you want to work with the Cartesian version, one of my colleagues has created a similar version in the same mtuq_supp repository.

[mjy-888]

very thanks!

[mjy-888]

Hi@ammcpherson
I find this file https://github.com/mtuqorg/mtuq_supp/blob/main/greens_functions_libraries/specfem/cartesian_MT/DATABASES_REPO/1D_VM/16_PROC/DATA/Par_file is unable use, could you please update it, thanks!

[mjy-888]

STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT
STOP Error reading Mesh parameter SAVE_MESH_AS_CUBIT

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

 error generate_databases: number of processors supposed to run on:           16
 error generate_databases: number of MPI processors actually run on:            1

 this might be the serial version, please check if you have compiled all executables with MPI support...

 wrong number of MPI processes
 Error detected, aborting MPI... proc            0
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 30.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

[ammcpherson]

Hi @mjy-888,

That file is for SPECFEM3D Cartesian, and you will be unable to use it with the Globe version. You are posting this issue on the Cartesian Github, but had asked for help with the Globe code.

If you are trying to use the Cartesian code, then the issue here is that the mesh is setup to run on 16 processors/cores, and you tried to run it using 1. Typically this program is run on an HPC, though if your domain is small enough you could run it on a laptop.

[mjy-888]

thanks