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pandas 3 incompatibility #298
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Hey! Lovely tool and very well written! However, I noticed a small issue when using pandas
specifically, line 485 in subroutines.py ('bootstrapGenomes[bootstrapGenomes < 0.0001] = 0.0001') fails. It works if you upcast the type first, i.e. bootstrapGenomes = bootstrapGenomes.astype(float) first and then bootstrapGenomes[bootstrapGenomes < 0.0001] = 0.0001. Might be worth fixing, or alternatively, pin the specific pandas version.
Thank you for providing this valuable resource
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