experiencesdashboard/dev/02_dev.R at main · The-Strategy-Unit/experiencesdashboard · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
# Building a Prod-Ready, Robust Shiny Application.
#
# README: each step of the dev files is optional, and you don't have to
# fill every dev scripts before getting started.
# 01_start.R should be filled at start.
# 02_dev.R should be used to keep track of your development during the project.
# 03_deploy.R should be used once you need to deploy your app.
#
#
###################################
#### CURRENT FILE: DEV SCRIPT #####
###################################

# Engineering

stop()

## Dependencies ----
## Add one line by package you want to add as dependency - CRAN
usethis::use_package("thinkr")
usethis::use_package("dplyr")
usethis::use_package("tibble")
usethis::use_package("ggplot2")
usethis::use_package("purrr")
usethis::use_package("tidyr")
usethis::use_package("readr")
usethis::use_package("stringr")
usethis::use_package("forcats")
usethis::use_package("reactable")
usethis::use_package("UpSetR")
usethis::use_package("tibbletime")
usethis::use_package("shinydashboard")
usethis::use_package("dashboardthemes")
usethis::use_package("shinyWidgets")
usethis::use_package("waiter")
usethis::use_package("shinyjqui")
usethis::use_package("timevis")
usethis::use_package("rmarkdown")
usethis::use_package("pander")
usethis::use_package("pool")
usethis::use_package("odbc")
usethis::use_package("DBI")
usethis::use_package("dbplyr")
usethis::use_package("datamods")
usethis::use_package("here")
usethis::use_package("shinycssloaders")
usethis::use_package("xml2")
usethis::use_package("plotly")
usethis::use_package("fresh")
usethis::use_package("writexl")
usethis::use_package("memoise")
usethis::use_package("data.validator")
usethis::use_package("pool")
usethis::use_package("pins")

## Add one line by package you want to add as dependency - Non-CRAN e.g. GitHub
# usethis::use_dev_package("")

## Amend DESCRIPTION with dependencies read from package code parsing
attachment::att_amend_desc()

## Add modules ----
## Create a module infrastructure in R/
golem::add_module(name = "patient_experience") # Name of the module
golem::add_module(name = "search_text") # Name of the module
golem::add_module(name = "demographics") # Name of the module
golem::add_module(name = "data_management", fct = "helper") # Name of the module
golem::add_module(name = "summary_record") # Name of the module
golem::add_module(name = "demographics_selection") # Name of the module
golem::add_module(name = "documentation_page") # Name of the module
golem::add_module(name = "trend", utils = "helper") # Name of the module
golem::add_module(name = "header_message") # Name of the module
golem::add_module(name = "trend_overlap") # Name of the module
golem::add_module(name = "overlap_1") # Name of the module
golem::add_module(name = "comment_download", utils = "helper") # Name of the module
golem::add_module(name = "complex_comments") # Name of the module

## Add helper functions ----
## Creates ftc_* and utils_*
golem::add_fct("helpers")
golem::add_utils("helpers")
golem::add_utils("overlap_plot_helpers")
golem::add_fct("api_pred", with_test = TRUE)
golem::add_fct("get_complex_comments", with_test = TRUE)
golem::add_fct("nhs_shiny_theme")
golem::add_fct("app_server-helpers")

## External resources
## Creates .js and .css files at inst/app/www
golem::add_js_file("script")
golem::add_js_handler("handlers")
golem::add_css_file("custom")
golem::add_css_file("button-style")

## Add internal datasets ----
## If you have data in your package
usethis::use_data_raw(name = "my_dataset", open = FALSE)
usethis::use_data_raw(name = "framework", open = FALSE)

## Tests ----
# Adding the correct code coverage
# infrastructure in your application
usethis::use_coverage()

# Compute the code coverage of your application
covr::package_coverage() # this work too devtools:::test_coverage()
# identify files with zero code coverage
covr::zero_coverage(covr::package_coverage())

## Add one line by test you want to create
usethis::use_test("fft")
usethis::use_test("show_text")
usethis::use_test("search_text")
usethis::use_test("calculate_table")
usethis::use_test("tidy_data")
usethis::use_test("report_functions")
usethis::use_test("tidy_upload")
usethis::use_test("database-data")
usethis::use_test("fct_api_pred")
usethis::use_test("app_config")
usethis::use_test("filter_text")
usethis::use_test("spc_functions")
usethis::use_test("server-modules")
usethis::use_test("demographic_graphs")
usethis::use_test("fct_nhs_shiny_theme")
usethis::use_test("fct_app_server-helpers")
usethis::use_test("general_helpers")
usethis::use_test("mod_data_management_fct_helper")
usethis::use_test("app_server")
usethis::use_test("app_ui")
usethis::use_test("table_schemas")

# Documentation

## Vignette ----
usethis::use_vignette("experiencesdashboard")
devtools::build_vignettes()

## Code coverage ----
## (You'll need GitHub there)
usethis::use_github()
usethis::use_travis()
usethis::use_appveyor()

# You're now set! ----
# go to dev/03_deploy.R
rstudioapi::navigateToFile("dev/03_deploy.R")