Mutation matrix as input instead of vcf files

[tc86]

Hi, are there any options to load mutational matrix generated from other tools to use as the input file instead of vcf files? I have more than 200 samples and creating the granges object from the vcf files is taking a very long time.

[rhagelaar]

Hi tc86,

This is possible when you read in your mut_matrix. I use the following command:
mut_mat <- read.table("your_matrix.txt", sep = "\t", header = T)
Hope this helps