Usage problems

[ibarilar]

As it stands now I cannot say if this tool is operational or still in development.

Installing the requirements of this tool is already hard enough with pip not finding the correct versions. Furthermore there are multiples of python and bash scripts present without any mention of what they do.

Could an example of downloading, installing and running this tool on a sample be provided?

Cheers,
Ivan

[lostdevfound]

Hi, the tool is in working condition.
I've removed the requirements.txt file as it contained packages that are no longer used.
I updated the README file with the list of required packages. Here is what needs to be installed:

matplotlib                             3.3.4     
mixem                              0.1.4     
numpy                              1.15.4    
numpydoc                          0.8.0     
pysam                              0.15.0    
scipy                              1.1.0     
seaborn                              0.9.0

Regarding the bash scripts, please read the README file. If more details are needed you can open any bashsciprt file and read the header comments.
Hope this helps.

[ibarilar]

Thanks. Lets see if it works.

Found an error in the help part. A % sign in text is interfering with
"TypeError: %o format: an integer is required, not dict"

I suggest using the word percent in line 768 as it appears earlier in the sentence.