From 1d7065feca38da9a17b53129e99c045dc7f76064 Mon Sep 17 00:00:00 2001
From: Jonathan <jdfraine@gmail.com>
Date: Wed, 28 Feb 2018 14:12:16 +0200
Subject: [PATCH] Created check for MACOSX with __MACH__

---
 Makefile          | 131 ++++++++++++++++++----------------------------
 alard.c           |   9 +++-
 extractkern.c     |   9 +++-
 extractkernOnes.c |   9 +++-
 functions.c       |   9 +++-
 main.c            |   9 +++-
 maskim.c          |   9 +++-
 7 files changed, 98 insertions(+), 87 deletions(-)

diff --git a/Makefile b/Makefile
index 7e86f33..ea381e7 100644
--- a/Makefile
+++ b/Makefile
@@ -1,81 +1,50 @@
-#############################################################
-# TO BE CHANGED BY EACH USER TO POINT TO include/ AND lib/ 
-# DIRS HOLDING CFITSIO *.h AND libcfitsio IF THEY ARE NOT IN 
-# THE STANDARD PLACES
-# 
-
-CFITSIOINCDIR =  ../../cfitsio/include
-LIBDIR        =  ../../cfitsio/lib
-
-#
-#
-#############################################################
-# COMPILATION OPTIONS BELOW
-# 
-
-# another good memory checker is valgrind : http://valgrind.kde.org/index.html
-# valgrind --tool=memcheck hotpants
-
-# for memory checking with libefence
-# LIBS  = -L$(LIBDIR) -lm -lcfitsio -lefence
-
-# for profiling with gprof
-# COPTS = -pg -fprofile-arcs -funroll-loops -O3 -ansi -pedantic-errors -Wall -I$(CFITSIOINCDIR) 
-
-# for gdbugging
-#COPTS = -g3 -funroll-loops -O3 -ansi -pedantic-errors -Wall -I$(CFITSIOINCDIR) 
-
-# standard usage
-# recently added -std=c99 after a bug report
-COPTS = -funroll-loops -O3 -ansi -std=c99 -pedantic-errors -Wall -I$(CFITSIOINCDIR) -D_GNU_SOURCE
-LIBS  = -L$(LIBDIR) -lm -lcfitsio
-
-# compiler
-CC    = gcc 
-
-#
-#
-############################################################# 
-# BELOW SHOULD BE OK, UNLESS YOU WANT TO COPY THE EXECUTABLES
-# SOMEPLACE AFTER THEY ARE BUILT eg. hotpants
-#
-
-STDH  = functions.h globals.h defaults.h
-ALL   = main.o vargs.o alard.o functions.o 
-
-all:	hotpants extractkern maskim
-
-hotpants: $(ALL)
-	$(CC) $(ALL) -o hotpants $(LIBS) $(COPTS)
-#	cp hotpants ../../bin/$(ARCH)
-
-main.o: $(STDH) main.c
-	$(CC) $(COPTS)  -c main.c
-
-alard.o: $(STDH) alard.c
-	$(CC) $(COPTS)  -c alard.c
-
-functions.o: $(STDH) functions.c
-	$(CC) $(COPTS)  -c functions.c
-
-vargs.o: $(STDH) vargs.c
-	$(CC) $(COPTS)  -c vargs.c
-
-extractkern : extractkern.o 
-	$(CC) extractkern.o -o extractkern $(LIBS) $(COPTS)
-
-extractkern.o : $(STDH) extractkern.c
-	$(CC) $(COPTS)  -c extractkern.c
-
-maskim : maskim.o
-	$(CC) maskim.o -o maskim $(LIBS) $(COPTS)
-
-maskim.o: $(STDH) maskim.c
-	$(CC) $(COPTS)  -c maskim.c
-
-clean :
-	rm -f *.o
-	rm -f *~ .*~
-	rm -f hotpants
-	rm -f extractkern
-	rm -f maskim
+CFITSIOINCDIR = /usr/local/include
+
+#use only with no debugging
+COPTS = -funroll-loops -O3 -ansi -Wall -I$(CFITSIOINCDIR) -I/usr/include/malloc
+LIBS  =  -lm -lcfitsio  
+
+CC    = gcc 
+
+STDH  = functions.h globals.h defaults.h
+ALL   = main.o vargs.o alard.o functions.o 
+SWIG  = alard.o functions.o 
+ALLT  = main_test.o vargs.o alard.o functions.o 
+
+all:	hotpants 
+
+hotpants: $(ALL)
+	$(CC) $(ALL) -o hotpants $(LIBS) $(COPTS)
+
+hotpants_test: $(ALLT)
+	$(CC) $(ALLT) -o hotpants_test $(LIBS) $(COPTS)
+
+main_test.o: $(STDH) main_test.c
+	$(CC) $(COPTS)  -c main_test.c
+
+main.o: $(STDH) main.c
+	$(CC) $(COPTS)  -c main.c
+
+alard.o: $(STDH) alard.c
+	$(CC) $(COPTS)  -c alard.c
+
+functions.o: $(STDH) functions.c
+	$(CC) $(COPTS)  -c functions.c
+
+vargs.o: $(STDH) vargs.c
+	$(CC) $(COPTS)  -c vargs.c
+
+NCOPTS = -funroll-loops -O3 -I$(CFITSIOINCDIR) -I/usr/include/malloc
+
+extractkern : extractkern.c
+	$(CC) $(NCOPTS) extractkern.c -o extractkern $(LIBS) 
+
+maskim : maskim.c
+	$(CC) $(NCOPTS) maskim.c -o maskim $(LIBS)
+
+clean :
+	rm -f *.o
+	rm -f *~ .*~
+	rm -f hotpants
+	rm -f extractkern
+	rm -f maskim
diff --git a/alard.c b/alard.c
index 2467b9f..4b33594 100644
--- a/alard.c
+++ b/alard.c
@@ -1,7 +1,14 @@
 #include<stdio.h>
 #include<string.h>
 #include<math.h>
-#include<malloc.h>
+
+#if !defined(__MACH__)
+#include <malloc.h>
+#endif
+#if defined(__MACH__)
+#include <stdlib.h>
+#endif
+
 #include<stdlib.h>
 #include<fitsio.h>
 
diff --git a/extractkern.c b/extractkern.c
index 9857930..8595641 100644
--- a/extractkern.c
+++ b/extractkern.c
@@ -2,7 +2,14 @@
 #include<string.h>
 #include<strings.h>
 #include<math.h>
-#include<malloc.h>
+
+#if !defined(__MACH__)
+#include <malloc.h>
+#endif
+#if defined(__MACH__)
+#include <stdlib.h>
+#endif
+
 #include<stdlib.h>
 #include<fitsio.h>
 
diff --git a/extractkernOnes.c b/extractkernOnes.c
index d693fac..e4ae747 100644
--- a/extractkernOnes.c
+++ b/extractkernOnes.c
@@ -2,7 +2,14 @@
 #include<string.h>
 #include<strings.h>
 #include<math.h>
-#include<malloc.h>
+
+#if !defined(__MACH__)
+#include <malloc.h>
+#endif
+#if defined(__MACH__)
+#include <stdlib.h>
+#endif
+
 #include<stdlib.h>
 #include<fitsio.h>
 
diff --git a/functions.c b/functions.c
index 1dab79c..3cea448 100644
--- a/functions.c
+++ b/functions.c
@@ -1,7 +1,14 @@
 #include<stdio.h>
 #include<string.h>
 #include<math.h>
-#include<malloc.h>
+
+#if !defined(__MACH__)
+#include <malloc.h>
+#endif
+#if defined(__MACH__)
+#include <stdlib.h>
+#endif
+
 #include<stdlib.h>
 #include<fitsio.h>
 #include<ctype.h>
diff --git a/main.c b/main.c
index 2d8d44c..1c87ea7 100644
--- a/main.c
+++ b/main.c
@@ -1,7 +1,14 @@
 #include<stdio.h>
 #include<string.h>
 #include<math.h>
-#include<malloc.h>
+
+#if !defined(__MACH__)
+#include <malloc.h>
+#endif
+#if defined(__MACH__)
+#include <stdlib.h>
+#endif
+
 #include<stdlib.h>
 #include<fitsio.h>
 #include<ctype.h>
diff --git a/maskim.c b/maskim.c
index e5c25a2..d97441e 100644
--- a/maskim.c
+++ b/maskim.c
@@ -3,7 +3,14 @@
 #include<string.h>
 #include<strings.h>
 #include<math.h>
-#include<malloc.h>
+
+#if !defined(__MACH__)
+#include <malloc.h>
+#endif
+#if defined(__MACH__)
+#include <stdlib.h>
+#endif
+
 #include<stdlib.h>
 #include<fitsio.h>