mapdeduce/pyproject.toml at master · acorg/mapdeduce · GitHub

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# pyproject.toml

[build-system]
requires = ["setuptools>=61.0.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "mapdeduce"
version = "2.1.0"
description = """Handling antigenic maps and sequence data, testing amino \
    acid polymorphisms associated with antigenicity."""
readme = "README.md"
authors = [{ name = "David Pattinson", email = "david.pattinson@wisc.edu" }]
license = { file = "LICENSE" }
classifiers = [
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
]
keywords = ["influenza", "lmm", "antigenic cartography"]
dependencies = [
    "biopython",
    "flake8>=7.3.0",
    "isort>=6.1.0",
    "limix_legacy>=0.8.16",
    "matplotlib",
    "pandas",
    "rpy2>=3.0.0",
    "scikit-learn",
    "seaborn",
    "spm1d",
    "tqdm",
]
requires-python = ">=3.9"

[dependency-groups]
dev = ["black", "pytest", "flake8"]

[project.urls]
Homepage = "https://github.com/acorg/mapdeduce"

[tool.setuptools]
packages = ["mapdeduce"]

[tool.setuptools.package-data]
mapdeduce = ["data/test/*.fa"]

[tool.uv]
no-binary-package = ["rpy2-rinterface"]

[tool.uv.sources]
limix_legacy = { git = "https://github.com/davipatti/limix-legacy", branch = "master" }

[tool.black]
line-length = 79