diff --git a/src/MdDocs.CommandLineHelp/Commands/CommandLineHelpCommand.cs b/src/MdDocs.CommandLineHelp/Commands/CommandLineHelpCommand.cs
index 06b3896b..74c48bec 100644
--- a/src/MdDocs.CommandLineHelp/Commands/CommandLineHelpCommand.cs
+++ b/src/MdDocs.CommandLineHelp/Commands/CommandLineHelpCommand.cs
@@ -38,7 +38,7 @@ public bool Execute()
                 .Render(model)
                 .Save(
                     m_Configuration.OutputPath,
-                    cleanOutputDirectory: true,
+                    cleanOutputDirectory: m_Configuration.ShouldDeleteOutputPathBeforeGeneration,
                     markdownOptions: m_Configuration.Template.Default.GetSerializationOptions(m_Logger)
                 );
 
diff --git a/src/MdDocs.CommandLineHelp/Configuration/CommandLineHelpConfiguration.cs b/src/MdDocs.CommandLineHelp/Configuration/CommandLineHelpConfiguration.cs
index d1253ed2..6d69bfc8 100644
--- a/src/MdDocs.CommandLineHelp/Configuration/CommandLineHelpConfiguration.cs
+++ b/src/MdDocs.CommandLineHelp/Configuration/CommandLineHelpConfiguration.cs
@@ -11,12 +11,16 @@ public enum TemplateName
 
         public class DefaultTemplateConfiguration : IConfigurationWithMarkdownPresetSetting
         {
+            public const string s_DefaultApplicationMdFileName = "index.md";
+
             public bool IncludeVersion { get; set; }
 
             public bool IncludeAutoGeneratedNotice { get; set; }
 
             public MarkdownPreset MarkdownPreset { get; set; } = MarkdownPreset.Default;
 
+            public string ApplicationMdFileName { get; set; } = s_DefaultApplicationMdFileName;
+
         }
 
         public class TemplateConfiguration
@@ -33,6 +37,8 @@ public class TemplateConfiguration
         [ConvertToFullPath]
         public string AssemblyPath { get; set; } = "";
 
+        public bool ShouldDeleteOutputPathBeforeGeneration { get; set; } = true;
+
         public TemplateConfiguration Template { get; set; } = new TemplateConfiguration();
     }
 }
diff --git a/src/MdDocs.CommandLineHelp/Templates/CommandLineHelpTemplateProvider.cs b/src/MdDocs.CommandLineHelp/Templates/CommandLineHelpTemplateProvider.cs
index 52180dee..8bcdb016 100644
--- a/src/MdDocs.CommandLineHelp/Templates/CommandLineHelpTemplateProvider.cs
+++ b/src/MdDocs.CommandLineHelp/Templates/CommandLineHelpTemplateProvider.cs
@@ -13,7 +13,7 @@ public static ITemplate<ApplicationDocumentation> GetTemplate(ILogger logger, Co
             switch (configuration.Template.Name)
             {
                 case CommandLineHelpConfiguration.TemplateName.Default:
-                    return new CommandLineHelpDefaultTemplate(configuration, new DefaultCommandLineHelpPathProvider(), logger);
+                    return new CommandLineHelpDefaultTemplate(configuration, new DefaultCommandLineHelpPathProvider(configuration.Template.Default.ApplicationMdFileName), logger);
 
                 default:
                     throw new InvalidTemplateConfigurationException($"Unknown template '{configuration.Template.Name}'");
diff --git a/src/MdDocs.CommandLineHelp/Templates/Default/_PathProvider/DefaultCommandLineHelpPathProvider.cs b/src/MdDocs.CommandLineHelp/Templates/Default/_PathProvider/DefaultCommandLineHelpPathProvider.cs
index de1a383a..77799978 100644
--- a/src/MdDocs.CommandLineHelp/Templates/Default/_PathProvider/DefaultCommandLineHelpPathProvider.cs
+++ b/src/MdDocs.CommandLineHelp/Templates/Default/_PathProvider/DefaultCommandLineHelpPathProvider.cs
@@ -1,10 +1,18 @@
-using Grynwald.MdDocs.CommandLineHelp.Model;
+using Grynwald.MdDocs.CommandLineHelp.Configuration;
+using Grynwald.MdDocs.CommandLineHelp.Model;
 
 namespace Grynwald.MdDocs.CommandLineHelp.Templates.Default
 {
     public class DefaultCommandLineHelpPathProvider : ICommandLineHelpPathProvider
     {
-        public string GetPath(ApplicationDocumentation model) => "index.md";
+        private readonly string m_ApplicationDocumentationName;
+
+        public DefaultCommandLineHelpPathProvider(string applicationDocumentationName = CommandLineHelpConfiguration.DefaultTemplateConfiguration.s_DefaultApplicationMdFileName)
+        {
+            m_ApplicationDocumentationName = applicationDocumentationName;
+        }
+
+        public string GetPath(ApplicationDocumentation model) => m_ApplicationDocumentationName;
 
         public string GetPath(CommandDocumentation model) => $"commands/{model.Name}.md";
     }