Crashed with error "'bowtie-build' failed to create breakpoint index" #22
Description
What steps will reproduce the problem?
Running chimerascan-0.4.5 with command line arguments with Paired End RNA-Seq
data
What is the expected output? What do you see instead?
A <filename>.bedpe was expected output.
I see the error "'bowtie-build' failed to create breakpoint index" instead.
What version of the product are you using? On what operating system?
chimerascan-0.4.5, OS is Linux compute000 2.6.32-220.el6.x86_64 #1 SMP Wed Nov
9 08:03:13 EST 2011 x86_64 x86_64 x86_64 GNU/Linux
Please provide any additional information below.
I am not sure why it failed, because I ran it previously for other sample and
chimerascan ran for 3-4 days but did give me a result .bedpe file.
Original issue reported on code.google.com by chavan.s...@gmail.com on 9 Apr 2014 at 3:22