Volumina - Volume Slicing and Editing Library

Installing

conda install -c ilastik-forge -c conda-forge volumina

Using Volumina as an Image Viewer

Currently, only format supported is .npy.

Open an .npy image and display it:

# Usage: volumina image axisorder
volumina <myimage.npy> --axistags yx

axisorder should correspond to the data. Only t (time), c (channel), and the spacial axes x, y, z are valid.

Volumina Development

Create a development environment

To set up a development environment, we currently recommend to follow Contributing Guidelines of our main repository ilastik: CONTRIBUTING