bgen

BGEN is a BGEN parser for golang. It can read files in the .bgen format, but it cannot write them.

This package supports the most common use-cases for BGEN specifications 1.1, 1.2, and 1.3. It does not yet support phased data.

Installation

go get github.com/carbocation/bgen

For BGEN specifications 1.1, 1.2, and 1.3 this package is immediately usable after go get. Only unphased samples are correctly supported currently.

The API is under active development and the public API may change for now.

For the current API, please see the BGEN Godoc

Name		Name	Last commit message	Last commit date
Latest commit History 94 Commits
example		example
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
README.md		README.md
allele.go		allele.go
bgen.go		bgen.go
bitreader.go		bitreader.go
bitreader_test.go		bitreader_test.go
compression.go		compression.go
go.mod		go.mod
go.sum		go.sum
layout.go		layout.go
probability.go		probability.go
sample.go		sample.go
time.go		time.go
util.go		util.go
variant.go		variant.go
variantindex.go		variantindex.go
variantindex_openbgicgo.go		variantindex_openbgicgo.go
variantindex_openbgicnogo.go		variantindex_openbgicnogo.go
variantreader.go		variantreader.go
zstd.go		zstd.go