Handle LinkML migration issue of `pydantic2linkml: Unable to translate the logic contained in the after validation function`

[candleindark]

pydantic2linkml complains about not able to translate the logic in validation function as in

or via grep -n -A1 "Unable to translate the logic contained in the after validation" dandischema/models.yaml.

Cause

These are the result of pydantic2linkml not able translate runtime logic in Pydantic validation functions to LinkML.

Stats

The validation functions that are causing the complains:

Function	Count	Lines in models.yaml the complain appears
AccessRequirements.open_or_embargoed	1	331
Contributor.ensure_contact_person_has_email	5	419, 423, 719, 732, 736
dandischema.models.BareAsset.digest_check	1	461
dandischema.models.DandiBaseModel.ensure_schemakey	1	658
dandischema.models.PropertyValue.ensure_value	1	703
pydantic.networks.EmailStr._validate	1	487
pydantic.types.ByteSize._validate	1	395
Resource.identifier_or_url	1	631

Total complains: 12

Solution

The runtime logic in each Pydantic validation function has to be evaluated individually for translation.