diff --git a/.github/workflows/dsBase_test_suite.yaml b/.github/workflows/dsBase_test_suite.yaml index 04319b4f..00b230a4 100644 --- a/.github/workflows/dsBase_test_suite.yaml +++ b/.github/workflows/dsBase_test_suite.yaml @@ -22,6 +22,8 @@ jobs: dsBase_test_suite: runs-on: ubuntu-latest timeout-minutes: 120 + permissions: + contents: write # These should all be constant, except TEST_FILTER. This can be used to test # subsets of test files in the testthat directory. Options are like: diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml new file mode 100644 index 00000000..0ab748d6 --- /dev/null +++ b/.github/workflows/test-coverage.yaml @@ -0,0 +1,62 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + +name: test-coverage.yaml + +permissions: read-all + +jobs: + test-coverage: + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::covr, any::xml2 + needs: coverage + + - name: Test coverage + run: | + cov <- covr::package_coverage( + quiet = FALSE, + clean = FALSE, + install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") + ) + print(cov) + covr::to_cobertura(cov) + shell: Rscript {0} + + - uses: codecov/codecov-action@v5 + with: + # Fail if error if not on PR, or if on PR and token is given + fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }} + files: ./cobertura.xml + plugins: noop + disable_search: true + token: ${{ secrets.CODECOV_TOKEN }} + + - name: Show testthat output + if: always() + run: | + ## -------------------------------------------------------------------- + find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true + shell: bash + + - name: Upload test results + if: failure() + uses: actions/upload-artifact@v4 + with: + name: coverage-test-failures + path: ${{ runner.temp }}/package diff --git a/README.md b/README.md index de46eade..cc983936 100644 --- a/README.md +++ b/README.md @@ -4,6 +4,7 @@ [![](https://www.r-pkg.org/badges/version/dsBase?color=black)](https://cran.r-project.org/package=dsBase) [![R build status](https://github.com/datashield/dsBase/workflows/R-CMD-check/badge.svg)](https://github.com/datashield/dsBase/actions) +[![Codecov test coverage](https://codecov.io/gh/datashield/dsBase/graph/badge.svg)](https://app.codecov.io/gh/datashield/dsBase) ## Installation