Models still included in manifest

[FynnBe]

Hi there,
there are still models in the manifest file, that should be transfered to Zenodo:

models/manifest.bioimage.io.yaml

Lines 183 to 262 in 6259f76

	# ==================models====================
	- id: UNet2DHeLaSegmentation
	type: model
	rdf_source: u-net_hela_segmentation/model.yaml
	links:
	- deepimagej
	- imjoy/BioImageIO-Packager
	download_url: https://zenodo.org/record/6827059/files/deepimagej_hela_unet_segmentation.zip
	- id: UNet2DGlioblastomaSegmentation
	type: model
	rdf_source: u-net_glioblastoma_segmentation/model.yaml
	download_url: https://zenodo.org/record/4155785/files/deepimagej_u-net_glioblastoma_segmentation.zip
	links:
	- deepimagej
	- imjoy/BioImageIO-Packager
	- id: SMLMDensityMapEstimationDEFCoN
	type: model
	rdf_source: defcon_density_map_estimation/model.yaml
	download_url: https://zenodo.org/record/4608442/files/SMLM_Density%20Map_Estimation_%28DEFCoN%29.bioimage.io.model.zip
	links:
	- deepimagej
	- imjoy/BioImageIO-Packager
	- id: DeepSTORMZeroCostDL4Mic
	type: model
	rdf_source: deepstorm_zerocostdl4mic/model.yaml
	download_url: https://sandbox.zenodo.org/record/907832/files/bioimage.io.model.zip
	links:
	- zero/Notebook_Deep-STORM_2D_ZeroCostDL4Mic_DeepImageJ
	- deepimagej
	- imjoy/BioImageIO-Packager
	- id: MU-Lux_CTC_PhC-C2DL-PSC
	type: model
	rdf_source: mu-lux_ctc_phc-c2dl-psc/model.yaml
	download_url: https://sandbox.zenodo.org/record/914413/files/mu-lux_ctc_phc-c2dl-psc.zip
	links:
	- deepimagej
	- imjoy/BioImageIO-Packager
	- id: WidefieldTxredSuperResolution
	type: model
	rdf_source: widefield_txred_super-resolution/model.yaml
	download_url: https://sandbox.zenodo.org/record/913992/files/widefield_txred_super-resolution.zip
	links:
	- deepimagej
	- imjoy/BioImageIO-Packager
	- id: WidefieldDapiSuperResolution
	type: model
	rdf_source: widefield_dapi_super-resolution/model.yaml
	download_url: https://sandbox.zenodo.org/record/914422/files/widefield_dapi_super-resolution.zip
	links:
	- deepimagej
	- imjoy/BioImageIO-Packager
	- id: WidefieldFitcSuperResolution
	type: model
	rdf_source: widefield_fitc_super-resolution/model.yaml
	download_url: https://sandbox.zenodo.org/record/914425/files/widefield_fitc_super-resolution.zip
	links:
	- deepimagej
	- imjoy/BioImageIO-Packager
	- id: Mt3VirtualStaining
	type: model
	rdf_source: mt3_virtual_staining/model.yaml
	download_url: https://sandbox.zenodo.org/record/906805/files/bioimage.io.model.zip
	links:
	- deepimagej
	- imjoy/BioImageIO-Packager
	- id: SkinLesionClassification
	type: model
	rdf_source: skin_lesion_classification/model.yaml
	download_url: https://sandbox.zenodo.org/record/906807/files/bioimage.io.model.zip
	links:
	- deepimagej

[FynnBe]

related issues: #47, https://github.com/bioimage-io/bioimage.io/issues/308

[FynnBe]

some of these models do not pass static validation:

log output

[[{'bioimageio_spec_version': '0.4.9',
   'error': {'_schema': ['Minimal shape [ 1. 32. 32.  1.] of output output is too small for halo [0, 97, 97, 0].']},
   'id': 'validation_summary_latest_static',
   'name': 'bioimageio.spec static validation of  RDF  with update to latest format version',
   'nested_errors': {},
   'source_name': '/home/runner/work/collection-bioimage-io/collection-bioimage-io/scripts/../gh-pages/rdfs/deepimagej/MU-Lux_CTC_PhC-C2DL-PSC/latest/rdf.yaml',
   'status': 'failed',
   'traceback': None,
   'warnings': {'name': "Unrecognized run mode 'deepimagej'",
                'tags': "Missing tags corresponding to bioimage.io categories: [{'modality': ['electron-microscopy', "
                        "'cryo-electron-microscopy', 'fluorescence-light-microscopy', 'transmission-light-microscopy', "
                        "'super-resolution-microscopy', 'x-ray-microscopy', 'force-microscopy', "
                        "'high-content-imaging', 'whole-slide-imaging', 'other']}, {'dims': ['2d', '3d', '2d-t', "
                        "'3d-t']}, {'content': ['cells', 'nuclei', 'extracellular-vesicles', 'tissue', 'plant', "
                        "'mitochondria', 'vasculature', 'cell-membrane', 'brain', 'whole-organism']}, {'framework': "
                        "['tensorflow', 'pytorch', 'tensorflow.js']}, {'network': ['unet', 'densenet', 'resnet', "
                        "'inception', 'shufflenet']}, {'task': ['semantic-segmentation', 'instance-segmentation', "
                        "'object-detection', 'image-classification', 'denoising', 'image-restoration', "
                        "'image-reconstruction', 'in-silico-labeling']}]",
                'weights': {'keras_hdf5': "missing 'tensorflow_version' entry for weights format keras_hdf5"}}}],
 [{'bioimageio_spec_version': '0.4.9',
   'error': {'_schema': ['Minimal shape [ 1. 20. 20.  1.] of output output is too small for halo [0, 10, 10, 0].']},
   'id': 'validation_summary_latest_static',
   'name': 'bioimageio.spec static validation of  RDF  with update to latest format version',
   'nested_errors': {},
   'source_name': '/home/runner/work/collection-bioimage-io/collection-bioimage-io/scripts/../gh-pages/rdfs/deepimagej/SMLMDensityMapEstimationDEFCoN/latest/rdf.yaml',
   'status': 'failed',
   'traceback': None,
   'warnings': {'tags': "Missing tags corresponding to bioimage.io categories: [{'modality': ['electron-microscopy', "
                        "'cryo-electron-microscopy', 'fluorescence-light-microscopy', 'transmission-light-microscopy', "
                        "'super-resolution-microscopy', 'x-ray-microscopy', 'force-microscopy', "
                        "'high-content-imaging', 'whole-slide-imaging', 'other']}, {'dims': ['2d', '3d', '2d-t', "
                        "'3d-t']}, {'content': ['cells', 'nuclei', 'extracellular-vesicles', 'tissue', 'plant', "
                        "'mitochondria', 'vasculature', 'cell-membrane', 'brain', 'whole-organism']}, {'task': "
                        "['semantic-segmentation', 'instance-segmentation', 'object-detection', "
                        "'image-classification', 'denoising', 'image-restoration', 'image-reconstruction', "
                        "'in-silico-labeling']}]",
                'weights': {'tensorflow_js': "missing 'tensorflow_version' entry for weights format tensorflow_js"}}}],
 [{'bioimageio_spec_version': '0.4.9',
   'error': {'license': ['Must be one of: bzip2-1.0.6, Glulxe, Parity-7.0.0, OML, UCL-1.0, UPL-1.0, BSD-Protection, '
                         'OCLC-2.0, eCos-2.0, Multics, IPL-1.0, IPA, eGenix, Glide, Entessa, FSFUL, Nunit, '
                         'MPL-2.0-no-copyleft-exception, libpng-2.0, OLDAP-2.2.1, curl, ANTLR-PD, CC-BY-SA-2.0, '
                         'LiLiQ-P-1.1, TCP-wrappers, Unicode-DFS-2016, ODbL-1.0, LPPL-1.3a, CERN-OHL-1.2, ADSL, '
                         'CDDL-1.0, Motosoto, BUSL-1.1, OGL-UK-1.0, xinetd, Imlib2, SNIA, OGTSL, TMate, OCCT-PL, '
                         'GPL-1.0-or-later, YPL-1.1, CECILL-2.0, PHP-3.0, BlueOak-1.0.0, Zimbra-1.3, OGC-1.0, '
                         'NASA-1.3, SPL-1.0, Intel-ACPI, SISSL-1.2, OGL-Canada-2.0, CC-BY-3.0-US, copyleft-next-0.3.1, '
                         'GFDL-1.1-invariants-or-later, GL2PS, MS-PL, SCEA, CC-BY-ND-2.5, SSPL-1.0, Spencer-86, '
                         'LPPL-1.0, GPL-3.0-only, GPL-2.0-with-autoconf-exception, Giftware, CC-BY-NC-ND-3.0, '
                         'CNRI-Python, GFDL-1.2-no-invariants-or-later, Afmparse, BSD-3-Clause-LBNL, NCGL-UK-2.0, '
                         'GPL-1.0+, PHP-3.01, Leptonica, bzip2-1.0.5, NIST-PD-fallback, OSL-1.0, OFL-1.1, JasPer-2.0, '
                         'Naumen, AGPL-1.0-only, C-UDA-1.0, MIT, TCL, LGPL-3.0-only, ECL-1.0, MPL-2.0, CC-BY-NC-1.0, '
                         'CC-BY-NC-ND-2.5, LPPL-1.3c, JSON, NBPL-1.0, CAL-1.0-Combined-Work-Exception, Unlicense, '
                         'CNRI-Python-GPL-Compatible, TU-Berlin-2.0, NLPL, LGPL-3.0-or-later, Beerware, NGPL, ZPL-2.1, '
                         'Saxpath, CC-BY-SA-2.0-UK, CECILL-2.1, XFree86-1.1, IBM-pibs, Zlib, StandardML-NJ, RPSL-1.0, '
                         'CECILL-1.0, OGL-UK-3.0, BSD-4-Clause-Shortened, Watcom-1.0, Wsuipa, TU-Berlin-1.0, Latex2e, '
                         'CECILL-B, EUPL-1.0, GFDL-1.2-or-later, CPL-1.0, CC-BY-ND-3.0, NTP, W3C-19980720, '
                         'GFDL-1.3-only, CC-BY-SA-4.0, EUPL-1.1, GFDL-1.1-no-invariants-only, JPNIC, AMPAS, '
                         'BSD-3-Clause, MIT-0, Intel, O-UDA-1.0, NPL-1.0, CC-BY-NC-2.5, Mup, Newsletr, PDDL-1.0, '
                         'SMLNJ, BSD-1-Clause, SimPL-2.0, OLDAP-1.2, Xnet, BSD-2-Clause, AML, GFDL-1.2-only, Info-ZIP, '
                         'DSDP, AGPL-1.0, BSD-4-Clause-UC, LGPL-2.1-only, OFL-1.0, CDL-1.0, LAL-1.3, Sendmail, '
                         'OGDL-Taiwan-1.0, Zimbra-1.4, Borceux, OSL-3.0, AMDPLPA, CC-BY-NC-SA-3.0, OLDAP-2.1, '
                         'BSD-2-Clause-FreeBSD, CPOL-1.02, MPL-1.0, blessing, Parity-6.0.0, AFL-3.0, SGI-B-1.0, '
                         'BSD-2-Clause-Patent, Artistic-1.0-cl8, CC-BY-NC-ND-4.0, Apache-1.1, ErlPL-1.1, OFL-1.0-RFN, '
                         'CC-BY-NC-3.0, CC-BY-NC-2.0, MakeIndex, Barr, CC-BY-SA-2.1-JP, GFDL-1.2-no-invariants-only, '
                         'Hippocratic-2.1, Adobe-2006, OSL-2.0, CC-BY-NC-SA-4.0, LGPL-2.1-or-later, '
                         'PolyForm-Noncommercial-1.0.0, OpenSSL, GPL-3.0-with-GCC-exception, OPL-1.0, '
                         'BSD-3-Clause-Attribution, Rdisc, MS-RL, EUDatagrid, LGPLLR, AFL-2.0, MIT-Modern-Variant, '
                         'GFDL-1.3-invariants-only, LiLiQ-R-1.1, CDLA-Permissive-1.0, DRL-1.0, BSD-Source-Code, '
                         'CC-BY-NC-ND-1.0, GLWTPL, VSL-1.0, CPAL-1.0, HaskellReport, APSL-1.1, GPL-2.0-or-later, '
                         'BSD-3-Clause-Modification, OLDAP-2.3, OFL-1.1-no-RFN, BitTorrent-1.0, NRL, GFDL-1.2, MirOS, '
                         'Sleepycat, LPPL-1.1, WTFPL, PolyForm-Small-Business-1.0.0, Caldera, HTMLTIDY, SISSL, MITNFA, '
                         '0BSD, CC0-1.0, LGPL-3.0+, CDLA-Sharing-1.0, GPL-2.0-with-bison-exception, EFL-2.0, AFL-1.1, '
                         'CC-BY-2.0, RPL-1.5, MulanPSL-1.0, GPL-3.0+, HPND-sell-variant, SSH-OpenSSH, OLDAP-1.1, '
                         'BitTorrent-1.1, Artistic-1.0, SSH-short, CC-BY-3.0-AT, MIT-CMU, '
                         'GFDL-1.3-no-invariants-or-later, TOSL, MIT-open-group, OLDAP-2.6, GFDL-1.1-only, '
                         'FreeBSD-DOC, GPL-2.0, Fair, CECILL-1.1, QPL-1.0, DOC, LAL-1.2, LPL-1.02, CERN-OHL-P-2.0, '
                         'etalab-2.0, FTL, Qhull, BSD-3-Clause-Clear, BSD-3-Clause-No-Military-License, FSFAP, '
                         'APL-1.0, OLDAP-2.8, TORQUE-1.1, Sendmail-8.23, diffmark, Frameworx-1.0, '
                         'zlib-acknowledgement, EFL-1.0, IJG, GFDL-1.3-no-invariants-only, Noweb, GFDL-1.3, LGPL-2.1, '
                         'gSOAP-1.3b, OFL-1.1-RFN, GPL-3.0-with-autoconf-exception, CERN-OHL-1.1, AFL-2.1, MIT-enna, '
                         'Adobe-Glyph, EPL-1.0, Xerox, OLDAP-2.0.1, MTLL, ImageMagick, psutils, ClArtistic, '
                         'GFDL-1.3-invariants-or-later, APSL-1.2, Apache-2.0, NIST-PD, Libpng, TAPR-OHL-1.0, ICU, '
                         'CC-BY-SA-2.5, CC-PDDC, AGPL-3.0-only, OSL-1.1, SugarCRM-1.1.3, FreeImage, W3C-20150513, '
                         'D-FSL-1.0, RSA-MD, CC-BY-ND-2.0, GPL-2.0-with-GCC-exception, AGPL-3.0-or-later, '
                         'AGPL-1.0-or-later, iMatix, Plexus, OFL-1.0-no-RFN, NAIST-2003, MIT-feh, ECL-2.0, CC-BY-2.5, '
                         'XSkat, Linux-OpenIB, Spencer-99, BSD-3-Clause-No-Nuclear-License-20[14](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:15), CC-BY-NC-ND-3.0-IGO, '
                         'CC-BY-NC-SA-1.0, GPL-2.0-with-font-exception, Crossword, OLDAP-2.2.2, BSD-2-Clause-NetBSD, '
                         'GPL-2.0+, CC-BY-4.0, OLDAP-2.0, NOSL, CDDL-1.1, APSL-1.0, EUPL-1.2, Nokia, RHeCos-1.1, '
                         'GPL-2.0-only, OLDAP-2.7, Vim, SAX-PD, BSD-3-Clause-No-Nuclear-Warranty, NetCDF, dvipdfm, '
                         'SHL-0.5, LGPL-2.0-only, AAL, Unicode-TOU, LPPL-1.2, xpp, SHL-0.51, NCSA, LGPL-2.0-or-later, '
                         'CC-BY-3.0, GPL-1.0, W3C, Aladdin, BSD-3-Clause-No-Nuclear-License, GFDL-1.1-or-later, SMPPL, '
                         'GFDL-1.1, OLDAP-1.4, Condor-1.1, GPL-1.0-only, GPL-3.0, PSF-2.0, Apache-1.0, EPL-2.0, '
                         'Python-2.0, OLDAP-2.4, PostgreSQL, Net-SNMP, Ruby, OSET-PL-2.1, Dotseqn, CUA-OPL-1.0, '
                         'Bahyph, LiLiQ-Rplus-1.1, LGPL-2.0+, wxWindows, AGPL-3.0, Abstyles, OLDAP-1.3, NTP-0, '
                         'OLDAP-2.2, CC-BY-SA-3.0, SWL, BSD-3-Clause-Open-MPI, LGPL-2.1+, GFDL-1.2-invariants-only, '
                         'Zend-2.0, GFDL-1.1-no-invariants-or-later, mpich2, NLOD-1.0, gnuplot, CERN-OHL-S-2.0, '
                         'OGL-UK-2.0, NPL-1.1, Zed, VOSTROM, ZPL-2.0, CERN-OHL-W-2.0, CC-BY-NC-SA-2.0, APSL-2.0, '
                         'LPL-1.0, ANTLR-PD-fallback, libtiff, HPND, GPL-3.0-or-later, Artistic-2.0, Unicode-DFS-20[15](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:16), '
                         'CC-BY-NC-4.0, RPL-1.1, CC-BY-SA-1.0, Cube, ODC-By-1.0, copyleft-next-0.3.0, CC-BY-ND-4.0, '
                         'ZPL-1.1, GFDL-1.3-or-later, CATOSL-1.1, GPL-2.0-with-classpath-exception, LGPL-2.0, '
                         'BSD-2-Clause-Views, BSL-1.0, CNRI-Jython, Eurosym, CC-BY-SA-3.0-AT, CECILL-C, EPICS, '
                         'CC-BY-NC-ND-2.0, GD, X11, MPL-1.1, GFDL-1.1-invariants-only, psfrag, RSCPL, YPL-1.0, '
                         'SGI-B-1.1, CC-BY-ND-1.0, SGI-B-2.0, APAFML, Spencer-94, ISC, MIT-advertising, '
                         'GFDL-1.2-invariants-or-later, CC-BY-NC-SA-2.5, CC-BY-1.0, OSL-2.1, CrystalStacker, FSFULLR, '
                         'libselinux-1.0, MulanPSL-2.0, LGPL-3.0, OLDAP-2.5, Artistic-1.0-Perl, AFL-1.2, CAL-1.0, '
                         'BSD-4-Clause, Interbase-1.0, NPOSL-3.0.']},
   'id': 'validation_summary_latest_static',
   'name': 'bioimageio.spec static validation of  RDF  with update to latest format version',
   'nested_errors': {},
   'source_name': '/home/runner/work/collection-bioimage-io/collection-bioimage-io/scripts/../gh-pages/rdfs/deepimagej/SkinLesionClassification/latest/rdf.yaml',
   'status': 'failed',
   'traceback': None,
   'warnings': {'license': 'BSD2 is not a recognized SPDX license identifier. See https://spdx.org/licenses/',
                'name': "Unrecognized run mode 'deepimagej'",
                'tags': "Missing tags corresponding to bioimage.io categories: [{'modality': ['electron-microscopy', "
                        "'cryo-electron-microscopy', 'fluorescence-light-microscopy', 'transmission-light-microscopy', "
                        "'super-resolution-microscopy', 'x-ray-microscopy', 'force-microscopy', "
                        "'high-content-imaging', 'whole-slide-imaging', 'other']}, {'dims': ['2d', '3d', '2d-t', "
                        "'3d-t']}, {'content': ['cells', 'nuclei', 'extracellular-vesicles', 'tissue', 'plant', "
                        "'mitochondria', 'vasculature', 'cell-membrane', 'brain', 'whole-organism']}, {'network': "
                        "['unet', 'densenet', 'resnet', 'inception', 'shufflenet']}, {'task': "
                        "['semantic-segmentation', 'instance-segmentation', 'object-detection', "
                        "'image-classification', 'denoising', 'image-restoration', 'image-reconstruction', "
                        "'in-silico-labeling']}]"}}],
 [{'bioimageio_spec_version': '0.4.9',
   'error': {'license': ['Must be one of: bzip2-1.0.6, Glulxe, Parity-7.0.0, OML, UCL-1.0, UPL-1.0, BSD-Protection, '
                         'OCLC-2.0, eCos-2.0, Multics, IPL-1.0, IPA, eGenix, Glide, Entessa, FSFUL, Nunit, '
                         'MPL-2.0-no-copyleft-exception, libpng-2.0, OLDAP-2.2.1, curl, ANTLR-PD, CC-BY-SA-2.0, '
                         'LiLiQ-P-1.1, TCP-wrappers, Unicode-DFS-20[16](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:17), ODbL-1.0, LPPL-1.3a, CERN-OHL-1.2, ADSL, '
                         'CDDL-1.0, Motosoto, BUSL-1.1, OGL-UK-1.0, xinetd, Imlib2, SNIA, OGTSL, TMate, OCCT-PL, '
                         'GPL-1.0-or-later, YPL-1.1, CECILL-2.0, PHP-3.0, BlueOak-1.0.0, Zimbra-1.3, OGC-1.0, '
                         'NASA-1.3, SPL-1.0, Intel-ACPI, SISSL-1.2, OGL-Canada-2.0, CC-BY-3.0-US, copyleft-next-0.3.1, '
                         'GFDL-1.1-invariants-or-later, GL2PS, MS-PL, SCEA, CC-BY-ND-2.5, SSPL-1.0, Spencer-86, '
                         'LPPL-1.0, GPL-3.0-only, GPL-2.0-with-autoconf-exception, Giftware, CC-BY-NC-ND-3.0, '
                         'CNRI-Python, GFDL-1.2-no-invariants-or-later, Afmparse, BSD-3-Clause-LBNL, NCGL-UK-2.0, '
                         'GPL-1.0+, PHP-3.01, Leptonica, bzip2-1.0.5, NIST-PD-fallback, OSL-1.0, OFL-1.1, JasPer-2.0, '
                         'Naumen, AGPL-1.0-only, C-UDA-1.0, MIT, TCL, LGPL-3.0-only, ECL-1.0, MPL-2.0, CC-BY-NC-1.0, '
                         'CC-BY-NC-ND-2.5, LPPL-1.3c, JSON, NBPL-1.0, CAL-1.0-Combined-Work-Exception, Unlicense, '
                         'CNRI-Python-GPL-Compatible, TU-Berlin-2.0, NLPL, LGPL-3.0-or-later, Beerware, NGPL, ZPL-2.1, '
                         'Saxpath, CC-BY-SA-2.0-UK, CECILL-2.1, XFree86-1.1, IBM-pibs, Zlib, StandardML-NJ, RPSL-1.0, '
                         'CECILL-1.0, OGL-UK-3.0, BSD-4-Clause-Shortened, Watcom-1.0, Wsuipa, TU-Berlin-1.0, Latex2e, '
                         'CECILL-B, EUPL-1.0, GFDL-1.2-or-later, CPL-1.0, CC-BY-ND-3.0, NTP, W3C-[19](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:20)9807[20](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:21), '
                         'GFDL-1.3-only, CC-BY-SA-4.0, EUPL-1.1, GFDL-1.1-no-invariants-only, JPNIC, AMPAS, '
                         'BSD-3-Clause, MIT-0, Intel, O-UDA-1.0, NPL-1.0, CC-BY-NC-2.5, Mup, Newsletr, PDDL-1.0, '
                         'SMLNJ, BSD-1-Clause, SimPL-2.0, OLDAP-1.2, Xnet, BSD-2-Clause, AML, GFDL-1.2-only, Info-ZIP, '
                         'DSDP, AGPL-1.0, BSD-4-Clause-UC, LGPL-2.1-only, OFL-1.0, CDL-1.0, LAL-1.3, Sendmail, '
                         'OGDL-Taiwan-1.0, Zimbra-1.4, Borceux, OSL-3.0, AMDPLPA, CC-BY-NC-SA-3.0, OLDAP-2.1, '
                         'BSD-2-Clause-FreeBSD, CPOL-1.02, MPL-1.0, blessing, Parity-6.0.0, AFL-3.0, SGI-B-1.0, '
                         'BSD-2-Clause-Patent, Artistic-1.0-cl8, CC-BY-NC-ND-4.0, Apache-1.1, ErlPL-1.1, OFL-1.0-RFN, '
                         'CC-BY-NC-3.0, CC-BY-NC-2.0, MakeIndex, Barr, CC-BY-SA-2.1-JP, GFDL-1.2-no-invariants-only, '
                         'Hippocratic-2.1, Adobe-2006, OSL-2.0, CC-BY-NC-SA-4.0, LGPL-2.1-or-later, '
                         'PolyForm-Noncommercial-1.0.0, OpenSSL, GPL-3.0-with-GCC-exception, OPL-1.0, '
                         'BSD-3-Clause-Attribution, Rdisc, MS-RL, EUDatagrid, LGPLLR, AFL-2.0, MIT-Modern-Variant, '
                         'GFDL-1.3-invariants-only, LiLiQ-R-1.1, CDLA-Permissive-1.0, DRL-1.0, BSD-Source-Code, '
                         'CC-BY-NC-ND-1.0, GLWTPL, VSL-1.0, CPAL-1.0, HaskellReport, APSL-1.1, GPL-2.0-or-later, '
                         'BSD-3-Clause-Modification, OLDAP-2.3, OFL-1.1-no-RFN, BitTorrent-1.0, NRL, GFDL-1.2, MirOS, '
                         'Sleepycat, LPPL-1.1, WTFPL, PolyForm-Small-Business-1.0.0, Caldera, HTMLTIDY, SISSL, MITNFA, '
                         '0BSD, CC0-1.0, LGPL-3.0+, CDLA-Sharing-1.0, GPL-2.0-with-bison-exception, EFL-2.0, AFL-1.1, '
                         'CC-BY-2.0, RPL-1.5, MulanPSL-1.0, GPL-3.0+, HPND-sell-variant, SSH-OpenSSH, OLDAP-1.1, '
                         'BitTorrent-1.1, Artistic-1.0, SSH-short, CC-BY-3.0-AT, MIT-CMU, '
                         'GFDL-1.3-no-invariants-or-later, TOSL, MIT-open-group, OLDAP-2.6, GFDL-1.1-only, '
                         'FreeBSD-DOC, GPL-2.0, Fair, CECILL-1.1, QPL-1.0, DOC, LAL-1.2, LPL-1.02, CERN-OHL-P-2.0, '
                         'etalab-2.0, FTL, Qhull, BSD-3-Clause-Clear, BSD-3-Clause-No-Military-License, FSFAP, '
                         'APL-1.0, OLDAP-2.8, TORQUE-1.1, Sendmail-8.[23](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:24), diffmark, Frameworx-1.0, '
                         'zlib-acknowledgement, EFL-1.0, IJG, GFDL-1.3-no-invariants-only, Noweb, GFDL-1.3, LGPL-2.1, '
                         'gSOAP-1.3b, OFL-1.1-RFN, GPL-3.0-with-autoconf-exception, CERN-OHL-1.1, AFL-2.1, MIT-enna, '
                         'Adobe-Glyph, EPL-1.0, Xerox, OLDAP-2.0.1, MTLL, ImageMagick, psutils, ClArtistic, '
                         'GFDL-1.3-invariants-or-later, APSL-1.2, Apache-2.0, NIST-PD, Libpng, TAPR-OHL-1.0, ICU, '
                         'CC-BY-SA-2.5, CC-PDDC, AGPL-3.0-only, OSL-1.1, SugarCRM-1.1.3, FreeImage, W3C-201[50](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:51)[51](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:52)3, '
                         'D-FSL-1.0, RSA-MD, CC-BY-ND-2.0, GPL-2.0-with-GCC-exception, AGPL-3.0-or-later, '
                         'AGPL-1.0-or-later, iMatix, Plexus, OFL-1.0-no-RFN, NAIST-2003, MIT-feh, ECL-2.0, CC-BY-2.5, '
                         'XSkat, Linux-OpenIB, Spencer-99, BSD-3-Clause-No-Nuclear-License-2014, CC-BY-NC-ND-3.0-IGO, '
                         'CC-BY-NC-SA-1.0, GPL-2.0-with-font-exception, Crossword, OLDAP-2.2.2, BSD-2-Clause-NetBSD, '
                         'GPL-2.0+, CC-BY-4.0, OLDAP-2.0, NOSL, CDDL-1.1, APSL-1.0, EUPL-1.2, Nokia, RHeCos-1.1, '
                         'GPL-2.0-only, OLDAP-2.7, Vim, SAX-PD, BSD-3-Clause-No-Nuclear-Warranty, NetCDF, dvipdfm, '
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                         'CC-BY-3.0, GPL-1.0, W3C, Aladdin, BSD-3-Clause-No-Nuclear-License, GFDL-1.1-or-later, SMPPL, '
                         'GFDL-1.1, OLDAP-1.4, Condor-1.1, GPL-1.0-only, GPL-3.0, PSF-2.0, Apache-1.0, EPL-2.0, '
                         'Python-2.0, OLDAP-2.4, PostgreSQL, Net-SNMP, Ruby, OSET-PL-2.1, Dotseqn, CUA-OPL-1.0, '
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                         'OLDAP-2.2, CC-BY-SA-3.0, SWL, BSD-3-Clause-Open-MPI, LGPL-2.1+, GFDL-1.2-invariants-only, '
                         'Zend-2.0, GFDL-1.1-no-invariants-or-later, mpich2, NLOD-1.0, gnuplot, CERN-OHL-S-2.0, '
                         'OGL-UK-2.0, NPL-1.1, Zed, VOSTROM, ZPL-2.0, CERN-OHL-W-2.0, CC-BY-NC-SA-2.0, APSL-2.0, '
                         'LPL-1.0, ANTLR-PD-fallback, libtiff, HPND, GPL-3.0-or-later, Artistic-2.0, Unicode-DFS-2015, '
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                         'ZPL-1.1, GFDL-1.3-or-later, CATOSL-1.1, GPL-2.0-with-classpath-exception, LGPL-2.0, '
                         'BSD-2-Clause-Views, BSL-1.0, CNRI-Jython, Eurosym, CC-BY-SA-3.0-AT, CECILL-C, EPICS, '
                         'CC-BY-NC-ND-2.0, GD, X11, MPL-1.1, GFDL-1.1-invariants-only, psfrag, RSCPL, YPL-1.0, '
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                         'GFDL-1.2-invariants-or-later, CC-BY-NC-SA-2.5, CC-BY-1.0, OSL-2.1, CrystalStacker, FSFULLR, '
                         'libselinux-1.0, MulanPSL-2.0, LGPL-3.0, OLDAP-2.5, Artistic-1.0-Perl, AFL-1.2, CAL-1.0, '
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   'id': 'validation_summary_latest_static',
   'name': 'bioimageio.spec static validation of  RDF  with update to latest format version',
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   'source_name': '/home/runner/work/collection-bioimage-io/collection-bioimage-io/scripts/../gh-pages/rdfs/deepimagej/UNet2DGlioblastomaSegmentation/latest/rdf.yaml',
   'status': 'failed',
   'traceback': None,
   'warnings': {'license': 'BSD-2 is not a recognized SPDX license identifier. See https://spdx.org/licenses/',
                'tags': "Missing tags corresponding to bioimage.io categories: [{'modality': ['electron-microscopy', "
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                        "'super-resolution-microscopy', 'x-ray-microscopy', 'force-microscopy', "
                        "'high-content-imaging', 'whole-slide-imaging', 'other']}, {'dims': ['2d', '3d', '2d-t', "
                        "'3d-t']}, {'content': ['cells', 'nuclei', 'extracellular-vesicles', 'tissue', 'plant', "
                        "'mitochondria', 'vasculature', 'cell-membrane', 'brain', 'whole-organism']}, {'framework': "
                        "['tensorflow', 'pytorch', 'tensorflow.js']}, {'network': ['unet', 'densenet', 'resnet', "
                        "'inception', 'shufflenet']}, {'task': ['semantic-segmentation', 'instance-segmentation', "
                        "'object-detection', 'image-classification', 'denoising', 'image-restoration', "
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                'weights': {'tensorflow_js': "missing 'tensorflow_version' entry for weights format tensorflow_js"}}}],
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   'error': {'_schema': ['Referenced tensor input_images with 3 dimensions does not match output tensor output_images '
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   'id': 'validation_summary_latest_static',
   'name': 'bioimageio.spec static validation of  RDF  with update to latest format version',
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                        "'3d-t']}, {'content': ['cells', 'nuclei', 'extracellular-vesicles', 'tissue', 'plant', "
                        "'mitochondria', 'vasculature', 'cell-membrane', 'brain', 'whole-organism']}, {'framework': "
                        "['tensorflow', 'pytorch', 'tensorflow.js']}, {'network': ['unet', 'densenet', 'resnet', "
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                        "'image-reconstruction', 'in-silico-labeling']}]"}}],
 [{'bioimageio_spec_version': '0.4.9',
   'error': {'_schema': ['Referenced tensor input_images with 3 dimensions does not match output tensor output_images '
                         'with 4 dimensions.']},
   'id': 'validation_summary_latest_static',
   'name': 'bioimageio.spec static validation of  RDF  with update to latest format version',
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   'source_name': '/home/runner/work/collection-bioimage-io/collection-bioimage-io/scripts/../gh-pages/rdfs/deepimagej/WidefieldFitcSuperResolution/latest/rdf.yaml',
   'status': 'failed',
   'traceback': None,
   'warnings': {'tags': "Missing tags corresponding to bioimage.io categories: [{'modality': ['electron-microscopy', "
                        "'cryo-electron-microscopy', 'fluorescence-light-microscopy', 'transmission-light-microscopy', "
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                        "'high-content-imaging', 'whole-slide-imaging', 'other']}, {'dims': ['2d', '3d', '2d-t', "
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                        "'image-reconstruction', 'in-silico-labeling']}]"}}],
 [{'bioimageio_spec_version': '0.4.9',
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                         'Saxpath, CC-BY-SA-2.0-UK, CECILL-2.1, XFree86-1.1, IBM-pibs, Zlib, StandardML-NJ, RPSL-1.0, '
                         'CECILL-1.0, OGL-UK-3.0, BSD-4-Clause-Shortened, Watcom-1.0, Wsuipa, TU-Berlin-1.0, Latex2e, '
                         'CECILL-B, EUPL-1.0, GFDL-1.2-or-later, CPL-1.0, CC-BY-ND-3.0, NTP, W3C-19980[72](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:73)0, '
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                         'BSD-2-Clause-FreeBSD, CPOL-1.02, MPL-1.0, blessing, Parity-6.0.0, AFL-3.0, SGI-B-1.0, '
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                         'CC-BY-NC-3.0, CC-BY-NC-2.0, MakeIndex, Barr, CC-BY-SA-2.1-JP, GFDL-1.2-no-invariants-only, '
                         'Hippocratic-2.1, Adobe-2006, OSL-2.0, CC-BY-NC-SA-4.0, LGPL-2.1-or-later, '
                         'PolyForm-Noncommercial-1.0.0, OpenSSL, GPL-3.0-with-GCC-exception, OPL-1.0, '
                         'BSD-3-Clause-Attribution, Rdisc, MS-RL, EUDatagrid, LGPLLR, AFL-2.0, MIT-Modern-Variant, '
                         'GFDL-1.3-invariants-only, LiLiQ-R-1.1, CDLA-Permissive-1.0, DRL-1.0, BSD-Source-Code, '
                         'CC-BY-NC-ND-1.0, GLWTPL, VSL-1.0, CPAL-1.0, HaskellReport, APSL-1.1, GPL-2.0-or-later, '
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                         'Sleepycat, LPPL-1.1, WTFPL, PolyForm-Small-Business-1.0.0, Caldera, HTMLTIDY, SISSL, MITNFA, '
                         '0BSD, CC0-1.0, LGPL-3.0+, CDLA-Sharing-1.0, GPL-2.0-with-bison-exception, EFL-2.0, AFL-1.1, '
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                         'FreeBSD-DOC, GPL-2.0, Fair, CECILL-1.1, QPL-1.0, DOC, LAL-1.2, LPL-1.02, CERN-OHL-P-2.0, '
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                         'Adobe-Glyph, EPL-1.0, Xerox, OLDAP-2.0.1, MTLL, ImageMagick, psutils, ClArtistic, '
                         'GFDL-1.3-invariants-or-later, APSL-1.2, Apache-2.0, NIST-PD, Libpng, TAPR-OHL-1.0, ICU, '
                         'CC-BY-SA-2.5, CC-PDDC, AGPL-3.0-only, OSL-1.1, SugarCRM-1.1.3, FreeImage, W3C-20150513, '
                         'D-FSL-1.0, RSA-MD, CC-BY-ND-2.0, GPL-2.0-with-GCC-exception, AGPL-3.0-or-later, '
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                         'XSkat, Linux-OpenIB, Spencer-99, BSD-3-Clause-No-Nuclear-License-2014, CC-BY-NC-ND-3.0-IGO, '
                         'CC-BY-NC-SA-1.0, GPL-2.0-with-font-exception, Crossword, OLDAP-2.2.2, BSD-2-Clause-NetBSD, '
                         'GPL-2.0+, CC-BY-4.0, OLDAP-2.0, NOSL, CDDL-1.1, APSL-1.0, EUPL-1.2, Nokia, RHeCos-1.1, '
                         'GPL-2.0-only, OLDAP-2.7, Vim, SAX-PD, BSD-3-Clause-No-Nuclear-Warranty, NetCDF, dvipdfm, '
                         'SHL-0.5, LGPL-2.0-only, AAL, Unicode-TOU, LPPL-1.2, xpp, SHL-0.51, NCSA, LGPL-2.0-or-later, '
                         'CC-BY-3.0, GPL-1.0, W3C, Aladdin, BSD-3-Clause-No-Nuclear-License, GFDL-1.1-or-later, SMPPL, '
                         'GFDL-1.1, OLDAP-1.4, Condor-1.1, GPL-1.0-only, GPL-3.0, PSF-2.0, Apache-1.0, EPL-2.0, '
                         'Python-2.0, OLDAP-2.4, PostgreSQL, Net-SNMP, Ruby, OSET-PL-2.1, Dotseqn, CUA-OPL-1.0, '
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                         'OLDAP-2.2, CC-BY-SA-3.0, SWL, BSD-3-Clause-Open-MPI, LGPL-2.1+, GFDL-1.2-invariants-only, '
                         'Zend-2.0, GFDL-1.1-no-invariants-or-later, mpich2, NLOD-1.0, gnuplot, CERN-OHL-S-2.0, '
                         'OGL-UK-2.0, NPL-1.1, Zed, VOSTROM, ZPL-2.0, CERN-OHL-W-2.0, CC-BY-NC-SA-2.0, APSL-2.0, '
                         'LPL-1.0, ANTLR-PD-fallback, libtiff, HPND, GPL-3.0-or-later, Artistic-2.0, Unicode-DFS-2015, '
                         'CC-BY-NC-4.0, RPL-1.1, CC-BY-SA-1.0, Cube, ODC-By-1.0, copyleft-next-0.3.0, CC-BY-ND-4.0, '
                         'ZPL-1.1, GFDL-1.3-or-later, CATOSL-1.1, GPL-2.0-with-classpath-exception, LGPL-2.0, '
                         'BSD-2-Clause-Views, BSL-1.0, CNRI-Jython, Eurosym, CC-BY-SA-3.0-AT, CECILL-C, EPICS, '
                         'CC-BY-NC-ND-2.0, GD, X11, MPL-1.1, GFDL-1.1-invariants-only, psfrag, RSCPL, YPL-1.0, '
                         'SGI-B-1.1, CC-BY-ND-1.0, SGI-B-2.0, APAFML, Spencer-[94](https://github.com/bioimage-io/collection-bioimage-io/actions/runs/4478480836/jobs/7874255548?pr=570#step:10:95), ISC, MIT-advertising, '
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   'id': 'validation_summary_latest_static',
   'name': 'bioimageio.spec static validation of  RDF  with update to latest format version',
   'nested_errors': {},
   'source_name': '/home/runner/work/collection-bioimage-io/collection-bioimage-io/scripts/../gh-pages/rdfs/deepimagej/WidefieldTxredSuperResolution/latest/rdf.yaml',
   'status': 'failed',
   'traceback': None,
   'warnings': {'license': 'CC BY 4.0 is not a recognized SPDX license identifier. See https://spdx.org/licenses/',
                'tags': "Missing tags corresponding to bioimage.io categories: [{'modality': ['electron-microscopy', "
                        "'cryo-electron-microscopy', 'fluorescence-light-microscopy', 'transmission-light-microscopy', "
                        "'super-resolution-microscopy', 'x-ray-microscopy', 'force-microscopy', "
                        "'high-content-imaging', 'whole-slide-imaging', 'other']}, {'dims': ['2d', '3d', '2d-t', "
                        "'3d-t']}, {'content': ['cells', 'nuclei', 'extracellular-vesicles', 'tissue', 'plant', "
                        "'mitochondria', 'vasculature', 'cell-membrane', 'brain', 'whole-organism']}, {'framework': "
                        "['tensorflow', 'pytorch', 'tensorflow.js']}, {'network': ['unet', 'densenet', 'resnet', "
                        "'inception', 'shufflenet']}, {'task': ['semantic-segmentation', 'instance-segmentation', "
                        "'object-detection', 'image-classification', 'denoising', 'image-restoration', "
                        "'image-reconstruction', 'in-silico-labeling']}]"}}],

[FynnBe]

@esgomezm @ivan-ea @IvanHCenalmor
could someone please take care of this. Having the failing models spam the CI logs in PRs is quite the nuisance.
A first step could be to fix the model errors (in github) or remove them from the manifest.bioimage.io.yaml (then they would also disappear from the website though).

[FynnBe]

I fixed one model to get you started: #49

[ivan-ea]

@esgomezm @ivan-ea @IvanHCenalmor could someone please take care of this. Having the failing models spam the CI logs in PRs is quite the nuisance. A first step could be to fix the model errors (in github) or remove them from the manifest.bioimage.io.yaml (then they would also disappear from the website though).

I think it could be ok to remove these models from the manifest. I've also encountered this problem in the DeepImageJ CI, since I'm using the bioimageio.core library to generate the tiff files, and for some models the function load_resource_description throws error. In the future I could fix these models and try to upload them to zenodo.
Nevertheless I would like to know what @esgomezm thinks about the models disappearing from the website.