PyCentiloid/package_structure at main · devhliu/PyCentiloid · GitHub

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├── pycentiloid/
│   ├── __init__.py
│   ├── config.py                  # Global configuration
│   ├── core/                      # Core functionality
│   │   ├── __init__.py
│   │   ├── tracer.py              # Tracer definitions and parameters
│   │   └── template.py            # Template management
│   ├── preprocessing/             # Image preprocessing
│   │   ├── __init__.py
│   │   ├── registration.py        # Spatial normalization
│   │   ├── segmentation.py        # Brain segmentation
│   │   └── harmonization.py       # Image harmonization
│   ├── atlas/                     # Atlas management
│   │   ├── __init__.py
│   │   ├── manager.py             # Atlas I/O and API
│   │   └── visualization.py       # Atlas visualization
│   ├── centiloid/                 # Centiloid calculation
│   │   ├── __init__.py
│   │   ├── calculation.py         # Centiloid score calculation
│   │   ├── calibration.py         # Centiloid calibration
│   │   ├── reference.py           # Reference regions
│   │   └── suvr.py                # SUVr calculation
│   ├── reporting/                 # Report generation
│   │   ├── __init__.py
│   │   ├── generator.py           # Report generation
│   │   ├── templates/             # Report templates
│   │   └── dicom_sr.py            # DICOM SR generation
│   ├── workflows/                 # Integrated workflows
│   │   ├── __init__.py
│   │   ├── centiloid.py           # Centiloid calculation workflow
│   │   ├── template.py            # Template generation workflow
│   │   ├── calibration.py         # Calibration workflow
│   │   └── report.py              # Reporting workflow
│   └── utils/                     # Utility functions
│       ├── __init__.py
│       ├── dicom.py               # DICOM utilities
│       ├── nifti.py               # NIFTI utilities
│       ├── conversion.py          # NIFTI <> DICOM conversion
│       ├── resolution.py          # Resolution handling
│       └── validation.py          # Input validation
├── data/                          # Data directory
│   ├── templates/                 # Template images
│   ├── masks/                     # Mask images
│   └── atlases/                   # Atlas data
├── docs/                          # Documentation
├── tests/                         # Unit tests
└── examples/                      # Example scripts