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Merge branch 'doc-add-changelog'
* add release notes to the manual * merge API docs in one page `package.rst` * switch to sphinx_py3doc_enhanced_theme * activate m2r for sphinx/markdown integration * add separate pages for Atom, Lattice and SpaceGroup docs
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‎doc/manual/source/conf.py‎

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'sphinx.ext.intersphinx',
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# 'sphinx.ext.coverage',
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# 'sphinx.ext.doctest',
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'm2r',
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]
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# Add any paths that contain templates here, relative to this directory.
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# You can specify multiple suffix as a list of string:
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#
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# source_suffix = ['.rst', '.md']
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source_suffix = '.rst'
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source_suffix = ['.rst', '.md']
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# The master toctree document.
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master_doc = 'index'
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# The theme to use for HTML and HTML Help pages. See the documentation for
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# a list of builtin themes.
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#
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html_theme = 'classic'
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html_theme = 'sphinx_py3doc_enhanced_theme'
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# Theme options are theme-specific and customize the look and feel of a theme
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# further. For a list of options available for each theme, see the
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# documentation.
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#
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html_theme_options = {'collapsiblesidebar' : 'true'}
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html_theme_options = {
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'collapsiblesidebar' : 'true',
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'navigation_with_keys' : 'true',
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}
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# Add any paths that contain custom static files (such as style sheets) here,
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# relative to this directory. They are copied after the builtin static files,
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# -- intersphinx configuration --------------------------------------------
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intersphinx_mapping = {
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'python' : ('https://docs.python.org/3.6', None),
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'python' : ('https://docs.python.org/3.7', None),
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'numpy' : ('https://docs.scipy.org/doc/numpy', None),
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}
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‎doc/manual/source/index.rst‎

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diffpy.structure documentation
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########################################################################
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Software version |release|.
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Last updated |today|.
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diffpy.structure - simple storage and manipulation of crystal structures
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| Software version |release|.
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| Last updated |today|.
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The diffpy.structure package provides objects for storing atomic
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coordinates, displacement parameters and other crystal structure data.
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diffpy.structure supports import and export of structure data in several
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includes definitions of all space groups in over 500 symmetry settings.
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2019

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Package contents
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========================================================================
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.. module:: diffpy.structure
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The top-level diffpy.structure module provides the following objects.
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Functions
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---------
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.. autofunction:: loadStructure
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Classes
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-------
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:py:class:`~atom.Atom`
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describes one atom site in the structure - its type, position,
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displacement parameters and so forth.
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:py:class:`~lattice.Lattice`
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depicts general coordinate system and associated operations.
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:py:class:`~structure.Structure`
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collection of :class:`!Atom` objects that form the structure together
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with associated :py:class:`!Lattice`.
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Exceptions
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----------
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.. autoclass:: StructureFormatError
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.. autoclass:: LatticeError
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.. autoclass:: SymmetryError
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Submodules
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========================================================================
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.. toctree::
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:maxdepth: 2
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mod_lattice.rst
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**FIXME BELOW**
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:doc:`submodules`
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* :ref:`genindex`
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**FIXME TO HERE**
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----
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Authors
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========================================================================
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*Acta Crystallogr. A* **71**, 562-568 (2015).
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Table of contents
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========================================================================
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.. index:: license
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.. toctree::
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:titlesonly:
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license
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release
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package
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License
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Indices
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========================================================================
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.. literalinclude:: ../../../LICENSE.txt
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* :ref:`genindex`
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* :ref:`search`

‎doc/manual/source/license.rst‎

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.. index:: license
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License
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#######
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‎doc/manual/source/mod_atom.rst‎

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diffpy.structure.atom
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=====================
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.. automodule:: diffpy.structure.atom
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:members:
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:undoc-members:
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:show-inheritance:

‎doc/manual/source/mod_spacegroup.rst‎

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diffpy.structure.spacegroupmod
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==============================
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.. automodule:: diffpy.structure.spacegroupmod
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:members:
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:undoc-members:
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:special-members: __call__, __eq__

‎doc/manual/source/package.rst‎

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:tocdepth: 2
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Package API
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###########
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Submodules
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==========
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.. toctree::
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:titlesonly:
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mod_atom
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mod_lattice
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mod_spacegroup
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diffpy.structure.parsers
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diffpy.structure.applications
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diffpy.structure.expansion
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diffpy.structure
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================
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.. module:: diffpy.structure
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The top-level diffpy.structure module provides the following objects.
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Functions
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---------
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.. autofunction:: loadStructure
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Classes
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-------
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:py:class:`~atom.Atom`
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describes one atom site in the structure - its type, position,
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displacement parameters and so forth.
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:py:class:`~lattice.Lattice`
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depicts general coordinate system and associated operations.
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:py:class:`~structure.Structure`
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collection of :class:`!Atom` objects that form the structure together
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with associated :py:class:`!Lattice`.
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Exceptions
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----------
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.. autoclass:: StructureFormatError
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.. autoclass:: LatticeError
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.. autoclass:: SymmetryError
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diffpy.structure.spacegroups
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============================
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.. automodule:: diffpy.structure.spacegroups
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:members:
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:undoc-members:
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:show-inheritance:
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diffpy.structure.structureerrors
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================================
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.. automodule:: diffpy.structure.structureerrors
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:members:
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:undoc-members:
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:show-inheritance:
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diffpy.structure.symmetryutilities
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==================================
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.. automodule:: diffpy.structure.symmetryutilities
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:members:
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:undoc-members:
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:show-inheritance:
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diffpy.structure.mmlibspacegroups
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=================================
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.. automodule:: diffpy.structure.mmlibspacegroups
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:members:
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:undoc-members:
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:show-inheritance:
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diffpy.structure.pdffitstructure
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================================
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.. automodule:: diffpy.structure.pdffitstructure
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:members:
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:undoc-members:
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:show-inheritance:
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diffpy.structure.sgtbxspacegroups
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=================================
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.. automodule:: diffpy.structure.sgtbxspacegroups
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:members:
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:undoc-members:
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:show-inheritance:
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diffpy.structure.structure
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==========================
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.. automodule:: diffpy.structure.structure
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:members:
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:undoc-members:
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:show-inheritance:
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diffpy.structure.utils
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======================
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.. automodule:: diffpy.structure.utils
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:members:
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:undoc-members:
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:show-inheritance:
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diffpy.structure.version
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========================
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.. automodule:: diffpy.structure.version
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:members:
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:undoc-members:
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:show-inheritance:

‎doc/manual/source/release.rst‎

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.. index:: release notes
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.. mdinclude:: ../../../CHANGELOG.md

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