ggplot issue

[Jega09]

I encounter the following errors that seem to stem from ggplot.

#Explortatory analysis

rnb.run.exploratory(rnb.set, report.dir)
2025-10-06 17:11:29 5.6 STATUS STARTED Exploratory Analysis
2025-10-06 17:11:29 5.6 INFO Number of cores: 1
2025-10-06 17:11:29 5.6 STATUS Designed color mappings for probe type and CGI status
Error in validObject(.Object) :
invalid class "ReportGgPlot" object: ggp must be a ggplot object

#Differential methylation: The following error was received after reaching the level of adding scatterplots.

Error in validObject(.Object) :
invalid class "ReportGgPlot" object: ggp must be a ggplot object

#Preprocessing: the following error was encountered after completing preprocessing

Warning message:
Using size aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use linewidth instead.
ℹ The deprecated feature was likely used in the RnBeads package.
Please report the issue to the authors.
This warning is displayed once every 8 hours.
Call lifecycle::last_lifecycle_warnings() to see where this warning was
Generated.

[dnalinkbi]

In my environment, the same error occurred with ggplot2 4.0.1, but with ggplot2 3.5.2, only a warning was displayed and the program exited normally. If the RnBeads source code doesn't resolve the issue, please check your ggplot2 version and try a lower version.