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train.py
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import json
import os.path as osp
import os
import numpy as np
import math
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch_geometric.utils import to_undirected
from torch_cluster import radius_graph, knn_graph
from torch_geometric.datasets import MNISTSuperpixels
import torch_geometric.transforms as T
from torch_geometric.data import DataLoader
from tqdm import tqdm
import argparse
import utils
import model.net as net
import model.data_loader as data_loader
from evaluate import evaluate
import warnings
warnings.simplefilter('ignore')
from time import strftime, gmtime
parser = argparse.ArgumentParser()
parser.add_argument('--restore_file', default=None,
help="Optional, name of the file in --model_dir containing weights to reload before \
training") # 'best' or 'train'
parser.add_argument('--data', default='data',
help="Name of the data folder")
parser.add_argument('--ckpts', default='ckpts',
help="Name of the ckpts folder")
def train(model, device, optimizer, scheduler, loss_fn, dataloader, epoch):
model.train()
loss_avg_arr = []
loss_avg = utils.RunningAverage()
with tqdm(total=len(dataloader)) as t:
for data in dataloader:
optimizer.zero_grad()
data = data.to(device)
x_cont = data.x[:,:8] #include puppi
#x_cont = data.x[:,:7] #remove puppi
x_cat = data.x[:,8:].long()
phi = torch.atan2(data.x[:,1], data.x[:,0])
etaphi = torch.cat([data.x[:,3][:,None], phi[:,None]], dim=1)
# NB: there is a problem right now for comparing hits at the +/- pi boundary
edge_index = radius_graph(etaphi, r=deltaR, batch=data.batch, loop=True, max_num_neighbors=255)
result = model(x_cont, x_cat, edge_index, data.batch)
loss = loss_fn(result, data.x, data.y, data.batch)
loss.backward()
optimizer.step()
# update the average loss
loss_avg_arr.append(loss.item())
loss_avg.update(loss.item())
t.set_postfix(loss='{:05.3f}'.format(loss_avg()))
t.update()
scheduler.step(np.mean(loss_avg_arr))
print('Training epoch: {:02d}, MSE: {:.4f}'.format(epoch, np.mean(loss_avg_arr)))
return np.mean(loss_avg_arr)
if __name__ == '__main__':
args = parser.parse_args()
dataloaders = data_loader.fetch_dataloader(data_dir=osp.join(os.environ['PWD'],args.data),
batch_size=6,
validation_split=.2)
train_dl = dataloaders['train']
test_dl = dataloaders['test']
print(len(train_dl), len(test_dl))
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
model = net.Net(8, 3).to(device) #include puppi
#model = net.Net(7, 3).to(device) #remove puppi
optimizer = torch.optim.AdamW(model.parameters(),lr=0.001)
scheduler = torch.optim.lr_scheduler.ReduceLROnPlateau(optimizer, factor=0.5, patience=500, threshold=0.05)
first_epoch = 0
best_validation_loss = 10e7
deltaR = 0.4
deltaR_dz = 0.3
loss_fn = net.loss_fn
metrics = net.metrics
model_dir = osp.join(os.environ['PWD'],args.ckpts)
loss_log = open(model_dir+'/loss.log', 'w')
loss_log.write('# loss log for training starting in '+strftime("%Y-%m-%d %H:%M:%S", gmtime()) + '\n')
loss_log.write('epoch, loss, val_loss\n')
loss_log.flush()
# reload weights from restore_file if specified
if args.restore_file is not None:
restore_ckpt = osp.join(model_dir, args.restore_file + '.pth.tar')
ckpt = utils.load_checkpoint(restore_ckpt, model, optimizer, scheduler)
first_epoch = ckpt['epoch']
print('Restarting training from epoch',first_epoch)
with open(osp.join(model_dir, 'metrics_val_best.json')) as restore_metrics:
best_validation_loss = json.load(restore_metrics)['loss']
for epoch in range(first_epoch+1,101):
print('Current best loss:', best_validation_loss)
if '_last_lr' in scheduler.state_dict():
print('Learning rate:', scheduler.state_dict()['_last_lr'][0])
# compute number of batches in one epoch (one full pass over the training set)
train_loss = train(model, device, optimizer, scheduler, loss_fn, train_dl, epoch)
# Save weights
utils.save_checkpoint({'epoch': epoch,
'state_dict': model.state_dict(),
'optim_dict': optimizer.state_dict(),
'sched_dict': scheduler.state_dict()},
is_best=False,
checkpoint=model_dir)
# Evaluate for one epoch on validation set
test_metrics, resolutions = evaluate(model, device, loss_fn, test_dl, metrics, deltaR,deltaR_dz, model_dir)
validation_loss = test_metrics['loss']
loss_log.write('%d,%.2f,%.2f\n'%(epoch,train_loss, validation_loss))
loss_log.flush()
is_best = (validation_loss<=best_validation_loss)
# If best_eval, best_save_path
if is_best:
print('Found new best loss!')
best_validation_loss=validation_loss
# Save weights
utils.save_checkpoint({'epoch': epoch,
'state_dict': model.state_dict(),
'optim_dict': optimizer.state_dict(),
'sched_dict': scheduler.state_dict()},
is_best=True,
checkpoint=model_dir)
# Save best val metrics in a json file in the model directory
utils.save_dict_to_json(test_metrics, osp.join(model_dir, 'metrics_val_best.json'))
utils.save(resolutions, osp.join(model_dir, 'best.resolutions'))
utils.save_dict_to_json(test_metrics, osp.join(model_dir, 'metrics_val_last.json'))
utils.save(resolutions, osp.join(model_dir, 'last.resolutions'))
loss_log.close()