diff --git a/data/1000GP_Phase3.GBR.chr22.hap.gz b/data/1000GP_Phase3.GBR.chr22.hap.gz
index 86435e8..bb457ae 100644
Binary files a/data/1000GP_Phase3.GBR.chr22.hap.gz and b/data/1000GP_Phase3.GBR.chr22.hap.gz differ
diff --git a/data/chr22.map.gz b/data/chr22.map.gz
index 5a5254b..f156bab 100644
Binary files a/data/chr22.map.gz and b/data/chr22.map.gz differ
diff --git a/src/ihs.cpp b/src/ihs.cpp
index eb14b31..1d5e62f 100644
--- a/src/ihs.cpp
+++ b/src/ihs.cpp
@@ -59,6 +59,7 @@ void calcIhsNoMpi(
     std::cout << "Calculations took " << std::chrono::duration<double, std::milli>(diff).count() << "ms" << std::endl;
 
     auto unStd = ihsfinder->unStdIHSByLine();
+    auto freQs = ihsfinder->freqsByLine();
 
     std::ofstream out2(outfile);
     out2 << "Index\tID\tFreq\tiHH_0\tiHH_1\tiHS\tStd iHS" << std::endl;
@@ -66,7 +67,8 @@ void calcIhsNoMpi(
     for (const auto& it : res)
     {
         auto s = unStd[it.first];
-        out2 << it.first << '\t' << hm.lineToId(it.first) << '\t' << s.freq << '\t' << s.iHH_0 << '\t' << s.iHH_1 << '\t' << s.iHS << "\t" << it.second << std::endl;
+        auto q = freQs[it.first];
+        out2 << it.first << '\t' << hm.lineToId(it.first) << '\t' << q << '\t' << s.iHH_0 << '\t' << s.iHH_1 << '\t' << s.iHS << "\t" << it.second << std::endl;
     }
     std::cout << "# valid loci: " << res.size() << std::endl;
     std::cout << "# loci with MAF <= " << minMAF << ": " << ihsfinder->numOutsideMaf() << std::endl;
diff --git a/src/ihs_mpi.cpp b/src/ihs_mpi.cpp
index f7f0f69..f4e4ac2 100644
--- a/src/ihs_mpi.cpp
+++ b/src/ihs_mpi.cpp
@@ -152,6 +152,7 @@ void calcIhsMpi(
         IHSFinder::LineMap res = ihsfinder->normalize();
 
         auto unStd = ihsfinder->unStdIHSByLine();
+        auto freQs = ihsfinder->freqsByLine();
 
         /*std::ofstream out(outfile);
         out << "Location\tiHH_0\tiHH_1\tiHS" << std::endl;
@@ -165,7 +166,8 @@ void calcIhsMpi(
         for (const auto& it : res)
         {
             auto s = unStd[it.first];
-            out2 << it.first << '\t' << hap.lineToId(it.first) << '\t' << s.freq << '\t' << s.iHH_0 << '\t' << s.iHH_1 << '\t' << s.iHS << "\t" << it.second << std::endl;
+            auto q = freQs[it.first];
+            out2 << it.first << '\t' << hap.lineToId(it.first) << '\t' << q << '\t' << s.iHH_0 << '\t' << s.iHH_1 << '\t' << s.iHS << "\t" << it.second << std::endl;
         }
         std::cout << "# valid loci: " << res.size() << std::endl;
         std::cout << "# loci with MAF <= " << minMAF << ": " << ihsfinder->numOutsideMaf() << std::endl;